BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026844
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
F PKA + F P A P + ++ LL D LNEYAY A++AGL Y + +T G
Sbjct: 538 FFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 597
Query: 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
++V GYN K ILL+ I +K+A F++ RF +IKE + +N + QP Q AMYY
Sbjct: 598 MYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYL 657
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGS--------IIQYIE 173
L++ + W E E L + L F+P +LSR +E + G+ I+Q +E
Sbjct: 658 RLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVE 717
Query: 174 DVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 213
D + ++ +PL PSQ + R V+L ++G +N V++N G+
Sbjct: 718 DTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSGI 762
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
F PKA + F P A P + ++ LL D LNEYAY A++AGL Y + +T G
Sbjct: 567 FFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 626
Query: 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
++V GYN K ILL+ I +K+A F++ RF +IKE + +N + QP Q AMYY
Sbjct: 627 MYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYL 686
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGS--------IIQYIE 173
L++ + W E E L + L F+P +LSR +E + G+ I+Q +E
Sbjct: 687 RLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVE 746
Query: 174 DVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 213
D + ++ +PL PSQ + R V+L ++G +N V++N G+
Sbjct: 747 DTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSGI 791
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
F PKA + F P A P + ++ LL D LNEYAY A++AGL Y + +T G
Sbjct: 538 FFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 597
Query: 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
++V GYN K ILL+ I +K+A F++ RF +IKE + +N + QP Q AMYY
Sbjct: 598 MYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYL 657
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGS--------IIQYIE 173
L++ + W E E L + L F+P +LSR +E + G+ I+Q +E
Sbjct: 658 RLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVE 717
Query: 174 DVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 213
D + ++ +PL PSQ + R V+L ++G +N V++N G+
Sbjct: 718 DTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSGI 762
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
F PKA + F P A P + ++ LL D LNEYAY A++AGL Y + +T G
Sbjct: 538 FFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 597
Query: 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
++V GYN K ILL+ I +K+A F++ RF +IKE + +N + QP Q AMYY
Sbjct: 598 MYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYL 657
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGS--------IIQYIE 173
L++ + W E E L + L F+P +LSR +E + G+ I+Q +E
Sbjct: 658 RLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVE 717
Query: 174 DVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 213
D + ++ +PL PSQ + R V+L ++G +N V++N G+
Sbjct: 718 DTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSGI 762
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
F PKA + F P A P + ++ LL D LNEYAY A++AGL Y + +T G
Sbjct: 525 FFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 584
Query: 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
++V GYN K ILL+ I +K+A F++ RF +IKE + +N + QP Q AMYY
Sbjct: 585 MYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYL 644
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGS--------IIQYIE 173
L++ + W E E L + L F+P +LSR +E + G+ I+Q +E
Sbjct: 645 RLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVE 704
Query: 174 DVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 213
D + ++ +PL PSQ + R V+L ++G +N V++N G+
Sbjct: 705 DTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSGI 749
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 17/227 (7%)
Query: 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
F PKA + F P A P + ++ LL D LNEYAY A++AGL Y + +T G
Sbjct: 538 FFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 597
Query: 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
++V GYN K ILL+ I +K+A F++ RF +IKE + +N + QP Q AMYY
Sbjct: 598 MYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYL 657
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGS--------IIQYIE 173
L++ + W E E L + L F+P +LSR +E + G+ I+Q +E
Sbjct: 658 RLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVE 717
Query: 174 DVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 213
D + ++ +PL PSQ R V+L ++G +N V++N G+
Sbjct: 718 DTLIEHAH--TKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGI 762
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
F PKA + F P A P + ++ LL D LNEYAY A++AGL Y + +T G
Sbjct: 538 FFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 597
Query: 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
++V GYN K ILL+ I +K+A F++ RF +IKE + +N + QP Q AMYY
Sbjct: 598 MYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYL 657
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGS--------IIQYIE 173
L++ + W E E L + L F+P +LSR +E + G+ I+Q +E
Sbjct: 658 RLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVE 717
Query: 174 DVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 213
D + ++ +PL PSQ + R V+L ++G +N V++N G+
Sbjct: 718 DTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNCGI 762
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
F PKA + F P A P + ++ LL D LNEYAY A++AGL Y + +T G
Sbjct: 538 FFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 597
Query: 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
++V GYN K ILL+ I +K+A F++ RF +IKE + +N + QP Q AMYY
Sbjct: 598 MYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYL 657
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGS--------IIQYIE 173
L++ + W E E L + L F+P +LSR +E + G+ I+Q +E
Sbjct: 658 RLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVE 717
Query: 174 DVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 213
D + ++ +PL PSQ + R V+L ++G +N V++N G+
Sbjct: 718 DTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNCGI 762
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
F PKA + F P A P + ++ LL D LNEYAY A++AGL Y + +T G
Sbjct: 567 FFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 626
Query: 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
++V GYN K ILL+ I +K+A F++ RF +IKE + +N + QP Q AMYY
Sbjct: 627 MYLSVKGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYL 686
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGSI--------IQYIE 173
L++ + W E E L + L F+P +LSR +E + G+I +Q +E
Sbjct: 687 RLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGVMQMVE 746
Query: 174 DVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 213
D + ++ +PL PSQ + R V+L ++G +N V++N G+
Sbjct: 747 DTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQRRNEVHNNCGI 791
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
F PKA + F P A P + ++ LL D LNEYAY A++AGL Y + +T G
Sbjct: 526 FFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 585
Query: 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
++V GYN K ILL+ I +K+A F++ RF +IKE + +N + QP Q AMYY
Sbjct: 586 MYLSVKGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYL 645
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGSI--------IQYIE 173
L++ + W E E L + L F+P +LSR +E + G+I +Q +E
Sbjct: 646 RLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGVMQMVE 705
Query: 174 DVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 213
D + ++ +PL PSQ + R V+L ++G +N V++N G+
Sbjct: 706 DTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQRRNEVHNNCGI 750
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
F PKA + F P A P + ++ LL D LNEYAY A++AGL Y + +T G
Sbjct: 567 FFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 626
Query: 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
++V GYN K ILL+ I +K+A F++ RF +IKE + +N + QP Q AMYY
Sbjct: 627 MYLSVKGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYL 686
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGSI--------IQYIE 173
L++ + W E E L + L F+P +LSR +E + G+I +Q +E
Sbjct: 687 RLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGVMQMVE 746
Query: 174 DVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 213
D + ++ +PL PSQ + R V+L ++G +N V++N G+
Sbjct: 747 DTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQRRNEVHNNCGI 791
>pdb|2H32|A Chain A, Crystal Structure Of The Pre-B Cell Receptor
Length = 126
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 70 NHKLRILLETIFQK-IAQFKVKPDRFSVIKEMV-TKEYHNNKFLQPFQLAMYYCSL 123
H R LL Q +Q P RFS K++ + Y + LQP AMYYC++
Sbjct: 43 GHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAM 98
>pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AHC|B Chain B, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AIL|C Chain C, Crystal Structure Of An Evolved Replicating Dna Polymerase
Length = 775
Score = 27.3 bits (59), Expect = 7.0, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 73 LRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQP 113
+RI+ E I QK+A +++ P++ + I E +T+ H K + P
Sbjct: 641 VRIVKEVI-QKLANYEIPPEKLA-IYEQITRPLHEYKAIGP 679
>pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna
PolymerasePCNA Monomer Mutant Complex
Length = 775
Score = 27.3 bits (59), Expect = 7.0, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 73 LRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQP 113
+RI+ E I QK+A +++ P++ + I E +T+ H K + P
Sbjct: 641 VRIVKEVI-QKLANYEIPPEKLA-IYEQITRPLHEYKAIGP 679
>pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase
Length = 775
Score = 27.3 bits (59), Expect = 7.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 73 LRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQP 113
+RI+ E I QK+A +++ P++ + I E +T+ H K + P
Sbjct: 641 VRIVKEVI-QKLANYEIPPEKLA-IYEQITRPLHEYKAIGP 679
>pdb|1VLH|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
Length = 173
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 26 VLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIA 85
V D+ LL+DYL ++ V GL T+ +E+ + N KL LET+F
Sbjct: 75 VKVDVHHGLLVDYLKKHGIKVLVRGLR---AVTDYEYELQMALANKKLYSDLETVFL--- 128
Query: 86 QFKVKPDRFSVIKEMVTKE 104
+ ++FS I + KE
Sbjct: 129 ---IASEKFSFISSSLVKE 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,084,291
Number of Sequences: 62578
Number of extensions: 284733
Number of successful extensions: 713
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 16
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)