Query 026844
Match_columns 232
No_of_seqs 149 out of 737
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 13:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959 N-arginine dibasic con 100.0 8.3E-39 1.8E-43 295.0 22.0 228 1-230 528-763 (974)
2 COG1025 Ptr Secreted/periplasm 100.0 6.3E-33 1.4E-37 252.8 20.7 220 1-229 520-748 (937)
3 PRK15101 protease3; Provisiona 100.0 1.9E-26 4.1E-31 221.2 22.7 222 1-230 541-767 (961)
4 COG0612 PqqL Predicted Zn-depe 99.1 1.2E-09 2.6E-14 96.9 11.2 165 4-169 36-208 (438)
5 TIGR02110 PQQ_syn_pqqF coenzym 99.0 2.3E-08 5E-13 92.5 15.4 166 3-169 18-195 (696)
6 PF00675 Peptidase_M16: Insuli 98.6 4.9E-07 1.1E-11 68.2 10.8 125 3-128 9-138 (149)
7 PRK15101 protease3; Provisiona 98.6 5E-07 1.1E-11 87.6 12.2 165 4-169 63-240 (961)
8 KOG0960 Mitochondrial processi 98.3 1.1E-05 2.4E-10 68.6 12.0 174 4-178 52-238 (467)
9 PTZ00432 falcilysin; Provision 97.3 0.0048 1E-07 61.0 13.7 167 5-176 114-326 (1119)
10 KOG2067 Mitochondrial processi 97.1 0.0024 5.2E-08 54.8 8.0 170 5-178 44-228 (472)
11 KOG2583 Ubiquinol cytochrome c 96.7 0.04 8.7E-07 47.5 11.6 158 3-166 40-208 (429)
12 COG0612 PqqL Predicted Zn-depe 96.5 0.023 4.9E-07 50.5 9.6 120 47-167 298-430 (438)
13 KOG2067 Mitochondrial processi 96.2 0.04 8.6E-07 47.6 9.1 139 21-168 301-444 (472)
14 COG1025 Ptr Secreted/periplasm 96.1 0.11 2.5E-06 49.6 12.1 143 21-166 749-907 (937)
15 PF05193 Peptidase_M16_C: Pept 95.4 0.15 3.1E-06 38.6 8.6 96 5-101 78-184 (184)
16 PF05193 Peptidase_M16_C: Pept 94.9 0.026 5.6E-07 42.8 3.1 29 141-169 1-29 (184)
17 PTZ00432 falcilysin; Provision 94.6 0.42 9E-06 47.7 11.3 161 8-168 681-880 (1119)
18 COG1026 Predicted Zn-dependent 94.5 0.72 1.6E-05 44.6 12.1 154 5-168 41-224 (978)
19 COG1026 Predicted Zn-dependent 93.3 1.7 3.7E-05 42.1 12.2 162 8-169 548-743 (978)
20 KOG0960 Mitochondrial processi 90.7 1.8 4E-05 37.7 8.3 116 52-169 329-450 (467)
21 PF08367 M16C_assoc: Peptidase 90.3 0.97 2.1E-05 37.0 6.3 123 7-136 92-232 (248)
22 KOG0959 N-arginine dibasic con 88.8 5.2 0.00011 39.2 10.7 159 8-167 51-223 (974)
23 KOG0961 Predicted Zn2+-depende 71.0 11 0.00024 35.5 5.8 108 62-170 636-758 (1022)
24 PTZ00179 60S ribosomal protein 70.8 19 0.0004 28.3 6.3 55 19-73 59-120 (189)
25 CHL00140 rpl6 ribosomal protei 67.1 37 0.0008 26.4 7.3 53 19-72 56-112 (178)
26 TIGR03654 L6_bact ribosomal pr 66.0 37 0.00081 26.2 7.1 52 20-72 56-111 (175)
27 PRK05518 rpl6p 50S ribosomal p 65.4 34 0.00073 26.7 6.8 55 19-73 58-119 (180)
28 TIGR03653 arch_L6P archaeal ri 64.3 39 0.00085 26.0 6.9 54 20-73 53-113 (170)
29 KOG2019 Metalloendoprotease HM 63.5 1.3E+02 0.0027 28.9 10.8 144 11-155 317-481 (998)
30 PRK05498 rplF 50S ribosomal pr 62.6 47 0.001 25.8 7.1 52 20-72 57-112 (178)
31 KOG0961 Predicted Zn2+-depende 62.0 24 0.00052 33.4 6.1 95 73-168 111-219 (1022)
32 PTZ00027 60S ribosomal protein 54.2 75 0.0016 25.0 7.0 55 19-73 60-123 (190)
33 PF09851 SHOCT: Short C-termin 52.4 35 0.00076 18.1 3.6 25 78-102 6-30 (31)
34 KOG2019 Metalloendoprotease HM 51.0 1.6E+02 0.0035 28.2 9.4 170 9-178 583-790 (998)
35 PRK14425 acylphosphatase; Prov 48.1 34 0.00073 23.5 3.7 39 44-82 27-66 (94)
36 PRK14420 acylphosphatase; Prov 46.8 43 0.00092 22.7 4.1 39 45-83 24-63 (91)
37 PRK14429 acylphosphatase; Prov 46.6 41 0.0009 22.8 4.0 39 44-82 23-62 (90)
38 PRK14430 acylphosphatase; Prov 45.6 38 0.00081 23.2 3.7 37 44-80 25-62 (92)
39 PF10978 DUF2785: Protein of u 45.3 1.3E+02 0.0027 23.2 7.0 81 60-142 59-143 (175)
40 PF00531 Death: Death domain; 44.5 49 0.0011 21.4 4.1 42 113-154 39-82 (83)
41 PRK14431 acylphosphatase; Prov 44.2 46 0.001 22.6 3.9 38 45-82 24-61 (89)
42 PRK14440 acylphosphatase; Prov 43.7 43 0.00093 22.8 3.7 37 45-81 25-62 (90)
43 PRK14449 acylphosphatase; Prov 42.2 53 0.0011 22.3 4.0 39 45-83 25-64 (90)
44 PRK14435 acylphosphatase; Prov 41.5 50 0.0011 22.4 3.8 37 45-81 24-61 (90)
45 PRK14444 acylphosphatase; Prov 41.1 49 0.0011 22.6 3.7 38 44-81 25-63 (92)
46 PRK14445 acylphosphatase; Prov 40.9 59 0.0013 22.1 4.1 38 44-81 25-63 (91)
47 PRK14436 acylphosphatase; Prov 40.4 52 0.0011 22.4 3.7 37 45-81 26-63 (91)
48 TIGR03853 matur_matur probable 40.0 55 0.0012 21.7 3.6 24 116-139 3-27 (77)
49 PRK14424 acylphosphatase; Prov 39.2 56 0.0012 22.4 3.8 37 45-81 29-66 (94)
50 PRK14451 acylphosphatase; Prov 38.9 58 0.0013 22.1 3.8 38 44-81 24-62 (89)
51 PRK14446 acylphosphatase; Prov 38.5 70 0.0015 21.7 4.1 38 44-81 23-61 (88)
52 PRK14836 undecaprenyl pyrophos 38.5 1.7E+02 0.0037 24.1 7.1 141 4-166 59-215 (253)
53 PRK14427 acylphosphatase; Prov 37.0 74 0.0016 21.8 4.1 39 45-83 28-67 (94)
54 PRK14448 acylphosphatase; Prov 36.9 63 0.0014 21.9 3.7 37 45-81 24-61 (90)
55 PRK14428 acylphosphatase; Prov 36.2 66 0.0014 22.3 3.7 37 45-81 30-67 (97)
56 PF00708 Acylphosphatase: Acyl 36.2 76 0.0016 21.3 4.1 39 45-83 26-65 (91)
57 PRK14422 acylphosphatase; Prov 36.1 73 0.0016 21.8 3.9 39 45-83 28-67 (93)
58 PRK14438 acylphosphatase; Prov 35.8 71 0.0015 21.7 3.8 37 45-81 25-62 (91)
59 PRK14423 acylphosphatase; Prov 35.1 75 0.0016 21.6 3.9 37 45-81 27-64 (92)
60 PRK14447 acylphosphatase; Prov 34.7 81 0.0018 21.6 4.0 37 45-81 26-64 (95)
61 PRK14442 acylphosphatase; Prov 34.0 77 0.0017 21.5 3.8 38 44-81 25-63 (91)
62 PF09568 RE_MjaI: MjaI restric 33.9 57 0.0012 25.1 3.3 51 101-155 33-83 (170)
63 PRK14443 acylphosphatase; Prov 33.5 78 0.0017 21.7 3.7 38 45-82 26-64 (93)
64 KOG2583 Ubiquinol cytochrome c 32.9 3.5E+02 0.0077 24.0 12.0 106 57-169 312-421 (429)
65 KOG3460 Small nuclear ribonucl 32.9 17 0.00037 24.2 0.4 48 59-106 25-72 (91)
66 PF11149 DUF2924: Protein of u 32.7 1.1E+02 0.0023 22.8 4.5 43 134-176 3-60 (136)
67 PF10193 Telomere_reg-2: Telom 32.5 58 0.0012 23.2 3.1 67 72-142 42-110 (114)
68 PRK14426 acylphosphatase; Prov 32.5 83 0.0018 21.4 3.8 39 44-82 25-64 (92)
69 PRK14441 acylphosphatase; Prov 31.8 99 0.0021 21.1 4.0 38 44-81 26-64 (93)
70 PF10678 DUF2492: Protein of u 31.5 94 0.002 20.6 3.7 25 115-139 4-29 (78)
71 PRK14421 acylphosphatase; Prov 31.5 82 0.0018 21.9 3.6 37 45-81 26-63 (99)
72 PRK14452 acylphosphatase; Prov 30.3 88 0.0019 22.1 3.6 37 44-80 41-78 (107)
73 PRK14450 acylphosphatase; Prov 30.1 1E+02 0.0022 20.9 3.8 37 45-81 24-62 (91)
74 PRK14433 acylphosphatase; Prov 29.7 1E+02 0.0022 20.7 3.8 37 45-81 23-60 (87)
75 PRK14830 undecaprenyl pyrophos 29.2 3.3E+02 0.0071 22.5 8.7 69 2-86 65-134 (251)
76 TIGR00055 uppS undecaprenyl di 28.5 3.2E+02 0.0069 22.1 8.6 60 13-87 52-112 (226)
77 PRK14434 acylphosphatase; Prov 26.7 1.3E+02 0.0029 20.4 4.0 38 45-82 24-64 (92)
78 PRK14437 acylphosphatase; Prov 26.5 1.2E+02 0.0025 21.5 3.7 38 44-81 44-82 (109)
79 PRK14432 acylphosphatase; Prov 25.9 1.4E+02 0.0029 20.4 3.9 39 45-83 24-64 (93)
80 PRK14840 undecaprenyl pyrophos 25.4 3.9E+02 0.0084 22.0 8.5 60 13-87 75-135 (250)
81 PF03220 Tombus_P19: Tombusvir 25.3 2.1E+02 0.0045 21.2 4.8 34 47-82 106-139 (170)
82 PF10231 DUF2315: Uncharacteri 25.0 1.6E+02 0.0035 21.5 4.3 21 139-159 74-94 (126)
83 cd08317 Death_ank Death domain 24.4 1.3E+02 0.0027 19.9 3.5 38 113-150 43-82 (84)
84 PRK00810 nifW nitrogenase stab 24.2 1.9E+02 0.0042 20.6 4.5 41 76-116 41-85 (113)
85 PF09840 DUF2067: Uncharacteri 24.1 2.9E+02 0.0063 21.7 5.9 36 51-86 25-60 (190)
86 cd08803 Death_ank3 Death domai 24.0 1.2E+02 0.0025 20.4 3.2 40 111-150 41-82 (84)
87 KOG4107 MP1 adaptor interactin 23.8 2.1E+02 0.0046 20.1 4.4 46 39-84 7-52 (125)
88 PF11693 DUF2990: Protein of u 22.9 81 0.0017 19.9 2.0 23 65-87 17-39 (64)
89 PRK14832 undecaprenyl pyrophos 22.9 4.4E+02 0.0095 21.8 8.9 60 13-87 71-131 (253)
90 PRK14834 undecaprenyl pyrophos 22.8 4.4E+02 0.0094 21.7 8.7 108 3-127 58-180 (249)
91 PRK14439 acylphosphatase; Prov 22.7 1.4E+02 0.0031 22.8 3.8 39 44-82 96-135 (163)
92 PRK10240 undecaprenyl pyrophos 22.6 4.2E+02 0.0091 21.5 8.6 133 13-166 46-194 (229)
93 smart00311 PWI PWI, domain in 21.7 2.3E+02 0.0051 18.2 5.8 28 131-158 41-68 (74)
94 PF04444 Dioxygenase_N: Catech 20.7 2.4E+02 0.0051 18.5 4.1 34 73-106 8-41 (74)
95 cd02395 SF1_like-KH Splicing f 20.6 3.3E+02 0.0072 19.5 5.9 44 62-107 68-114 (120)
No 1
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-39 Score=295.02 Aligned_cols=228 Identities=40% Similarity=0.719 Sum_probs=213.0
Q ss_pred CCCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHH
Q 026844 1 MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (232)
Q Consensus 1 ~F~~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i 80 (232)
.|++||+++.+.+.+|.+..+|.+++++.+|+.++.+.++|..|+|..||+++++..+.+|+.++|+||+||++.+++.+
T Consensus 528 ~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~ 607 (974)
T KOG0959|consen 528 KFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKV 607 (974)
T ss_pred ccccchhheeeeecCcccccCHHHHHHHHHHHHHHHHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCChHHHHhhCCCCCHHHHHHHHHHHHhhHhh
Q 026844 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (232)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~l~~it~edl~~f~~~~~~~~~~ 160 (232)
++.+.++.+++++|+.+|+.+.++|+|...++|+.+|.+++..++.+..|+.++++++++.+|++|+..|...++++.++
T Consensus 608 ~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~ 687 (974)
T KOG0959|consen 608 VQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEESIWSKEELLEALDDVTLEDLESFISEFLQPFHL 687 (974)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhccccchHHHHHHhhcccHHHHHHHHHHHhhhhhe
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred hheeccccH--------HHHHHHhccCCCCCCCCCCCCCcCccceEEeCCCCcEEEeecCCCCCCCCeeEEEEEEeCC
Q 026844 161 ECYIAGSII--------QYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQE 230 (232)
Q Consensus 161 ~~lv~Gni~--------~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~Ns~v~~y~Q~G~ 230 (232)
++||+||+. +.+.+.+ ....|.+.|+.+.+....+.+.||.|.+++|+.. .|+.|+|||+++|||+|.
T Consensus 688 e~~i~GN~te~~A~~l~~~v~d~l-~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~-~n~~~~ns~i~~~~Q~~~ 763 (974)
T KOG0959|consen 688 ELLIHGNLTEKEALQLLKSVLDIL-KSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHL-LNKTDDNSCIEVYYQIGV 763 (974)
T ss_pred EEEEecCcchHHHHHHHHHHHhhh-hccCCCCccccccccCcccceeccCCceEEEEcc-cccCCCCceEEEEEEccc
Confidence 999999764 4555566 3333447788788888999999999999887766 789999999999999974
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-33 Score=252.79 Aligned_cols=220 Identities=26% Similarity=0.434 Sum_probs=197.0
Q ss_pred CCCC-ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHH
Q 026844 1 MFST-PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (232)
Q Consensus 1 ~F~~-Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~ 79 (232)
.|++ ||+.+.+.|++|.+..||++.|+.+|++.+++|.|.+..|+|..||+++++.++.+|+.|+++||+++++.+++.
T Consensus 520 ~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~ 599 (937)
T COG1025 520 YFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRA 599 (937)
T ss_pred ccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhhhHHHhcceEEEeecCCCceEEEeeccccchHHHHHH
Confidence 3887 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCChHHHHhhCCCCCHHHHHHHHHHHHhhHh
Q 026844 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTF 159 (232)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~l~~it~edl~~f~~~~~~~~~ 159 (232)
+++.+..+.+++++|+.+|+++.++|+|.....||.++.+.+..++.++.|+.+|++++|++++++++.+|+..++++.+
T Consensus 600 ~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~ 679 (937)
T COG1025 600 FLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYWSREERRNALESVSVEEFAAFRDTLLNGVH 679 (937)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCCcCHHHHHHHhhhccHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheeccccHH--------HHHHHhccCCCCCCCCCCCCCcCccceEEeCCCCcEEEeecCCCCCCCCeeEEEEEEeC
Q 026844 160 LECYIAGSIIQ--------YIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQ 229 (232)
Q Consensus 160 ~~~lv~Gni~~--------~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~Ns~v~~y~Q~G 229 (232)
+|.||+||+.. ++++.+... .....+.+.+.+++|.+..+.....++++.|+|+.+-.|.+
T Consensus 680 lE~lv~Gn~~~~da~~l~~~~~~~l~~~---------~s~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~~~ 748 (937)
T COG1025 680 LEMLVLGNLTEADATNLAETLQKKLPAI---------GSTWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQYD 748 (937)
T ss_pred eeeeeeccchHHHHHHHHHHHHhhhccc---------CCcccCCCceeccCCCeeEeeeccCCcccccceeEeccccc
Confidence 99999998852 222222111 12224556788888888888877777777788877766655
No 3
>PRK15101 protease3; Provisional
Probab=99.95 E-value=1.9e-26 Score=221.21 Aligned_cols=222 Identities=18% Similarity=0.284 Sum_probs=184.9
Q ss_pred CC-CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHH
Q 026844 1 MF-STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (232)
Q Consensus 1 ~F-~~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~ 79 (232)
+| .+||+.+.+.|.+|....++++.+++.||++++++.+++..|.|.+||++++++ +.+|+.++++||++|++.+++.
T Consensus 541 ~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~ 619 (961)
T PRK15101 541 YFADEPKADISLVLRNPKAMDSARNQVLFALNDYLAGLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQA 619 (961)
T ss_pred ccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHHHHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHH
Confidence 37 599999999999999999999999999999999999999999999999999999 7899999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCChHHHHhhCCCCCHHHHHHHHHHHHhhHh
Q 026844 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTF 159 (232)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~l~~it~edl~~f~~~~~~~~~ 159 (232)
+++.+.++.+++++|++.|+.++++++|.....|+.++...+..+...++|++.+..++|+++|++|+.+|++++++..+
T Consensus 620 l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~py~~~~~~~~~l~~it~edl~~f~~~~~~~~~ 699 (961)
T PRK15101 620 LLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGKAYEQAIMPAQMLSQVPYFERDERRKLLPSITLKDVLAYRDALLSGAT 699 (961)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhce
Confidence 99999999999999999999999999999888899999988777777888888999999999999999999999999999
Q ss_pred hhheeccccHHH-HHHHhc---cCCCCCCCCCCCCCcCccceEEeCCCCcEEEeecCCCCCCCCeeEEEEEEeCC
Q 026844 160 LECYIAGSIIQY-IEDVFF---KGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQE 230 (232)
Q Consensus 160 ~~~lv~Gni~~~-i~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~Ns~v~~y~Q~G~ 230 (232)
++++|+||+... +.++.. .... ..+ ......+.+.++++...++... . ..+.|+++..|+|+|.
T Consensus 700 ~~~~v~GNi~~~ea~~l~~~~~~~l~--~~~---~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~ 767 (961)
T PRK15101 700 PEFLVVGNLTEEQVTTLARDVQKQLG--ADG---TEWWRGKDVVVDKKQSVNFEKA-G-SSTDSALAAVYVPTGY 767 (961)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHhc--cCC---cccccccceEeCCCCeEEEecC-C-CCCCCeEEEEEEeCCC
Confidence 999999998521 211111 1111 001 1112233455666655555432 2 2355888899999885
No 4
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=99.07 E-value=1.2e-09 Score=96.87 Aligned_cols=165 Identities=12% Similarity=0.075 Sum_probs=140.0
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~-----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~ 78 (232)
+|.+.+.+.+..+....++...+++.++..|+-+... ++...-+..|-..+...+..-....++-.+++++..++
T Consensus 36 ~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~ts~d~t~y~~~~l~~~~~~~l~ 115 (438)
T COG0612 36 APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALD 115 (438)
T ss_pred CCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccccchhhhhhhhhchhhhHHHHH
Confidence 6889999999988888899999999999999977742 46666667777766655444444444457799999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC---CCChHHHHhhCCCCCHHHHHHHHHHHH
Q 026844 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWMEELEVLPHLEAEDLAKFVPMML 155 (232)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~---~~~~~~~l~~l~~it~edl~~f~~~~~ 155 (232)
.+.+.+.++.++++.|++.|..++++++-...+ |...+...+...+..+ ..++....+.++++|.+|+.+|+++|+
T Consensus 116 llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~-p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~it~~dl~~f~~k~Y 194 (438)
T COG0612 116 LLADILLNPTFDEEEVEREKGVILEEIRMRQDD-PDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWY 194 (438)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHhhccCCCCCCCCCCHHHHHhCCHHHHHHHHHHhc
Confidence 999999999999999999999999999988777 9999999988888764 345677789999999999999999999
Q ss_pred hhHhhhheeccccH
Q 026844 156 SRTFLECYIAGSII 169 (232)
Q Consensus 156 ~~~~~~~lv~Gni~ 169 (232)
..-++.++|+||+.
T Consensus 195 ~p~n~~l~vvGdi~ 208 (438)
T COG0612 195 QPDNMVLVVVGDVD 208 (438)
T ss_pred CcCceEEEEecCCC
Confidence 99999999999873
No 5
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=98.96 E-value=2.3e-08 Score=92.54 Aligned_cols=166 Identities=12% Similarity=0.001 Sum_probs=139.0
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhcccccccEEEEEeeCceeEEEEeeccchHHHH
Q 026844 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE------YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRIL 76 (232)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e------~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~l 76 (232)
..|.+.+.+.+..+.........+++.++..|+-..... +.-..+..|-+++.+.+.+...+.+...++++...
T Consensus 18 ~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d~T~y~~~v~~~~l~~a 97 (696)
T TIGR02110 18 DAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFFELPAAALAAG 97 (696)
T ss_pred CCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCCeEEEEEEecHHHHHHH
Confidence 368899999999998888889999999999999776532 33334445788888888889999999999999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC-CCC-----hHHHHhhCCCCCHHHHHHH
Q 026844 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP-----WMEELEVLPHLEAEDLAKF 150 (232)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~-----~~~~l~~l~~it~edl~~f 150 (232)
++.+.+.+.++.+++++|++.|+.++.+++....+ |...+...+...+..+ .|. ..+-++.+..++.+|+.+|
T Consensus 98 L~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~dd-p~~~~~~~l~~~l~~~HPy~~~~iGt~esL~~it~~t~edL~~F 176 (696)
T TIGR02110 98 LARLCDMLARPLLTAEDQQREREVLEAEYIAWQND-ADTLREAALLDALQAGHPLRRFHAGSRDSLALPNTAFQQALRDF 176 (696)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHcCCCCCCCCCCCCCHHHHhCcccchHHHHHHH
Confidence 99999999999999999999999999999987655 9888988887777643 233 3445555555669999999
Q ss_pred HHHHHhhHhhhheeccccH
Q 026844 151 VPMMLSRTFLECYIAGSII 169 (232)
Q Consensus 151 ~~~~~~~~~~~~lv~Gni~ 169 (232)
+++++...++.+.|.|++.
T Consensus 177 ~~~~Y~p~NmvLvIvGdvs 195 (696)
T TIGR02110 177 HRRHYQAGNMQLWLQGPQS 195 (696)
T ss_pred HHHhcchhcEEEEEEeCCC
Confidence 9999999999999999874
No 6
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=98.64 E-value=4.9e-07 Score=68.19 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=107.9
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHH
Q 026844 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (232)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l-----~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll 77 (232)
..|.+.+.+.|..+....++.+.+++.|+..++.... .++.-..+..|.+++...+.+.+.+.+++.++.++.++
T Consensus 9 ~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~~~l 88 (149)
T PF00675_consen 9 GSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVLSEDLEKAL 88 (149)
T ss_dssp TSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHH
T ss_pred CCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEecccchhHH
Confidence 4699999999999999999999999999999886653 23333445568899999999999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC
Q 026844 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ 128 (232)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~ 128 (232)
+.+.+.+.++.++++.|+..|.++..+++....+ |...+...+...++.+
T Consensus 89 ~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~-~~~~~~~~l~~~~f~~ 138 (149)
T PF00675_consen 89 ELLADMLFNPSFDEEEFEREREQILQEIEEIKEN-PQELAFEKLHSAAFRG 138 (149)
T ss_dssp HHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988666 8888888888777653
No 7
>PRK15101 protease3; Provisional
Probab=98.59 E-value=5e-07 Score=87.58 Aligned_cols=165 Identities=12% Similarity=0.048 Sum_probs=133.5
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhcccccccEEEEEeeCceeEEEEeeccchHHHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE------YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e------~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll 77 (232)
.|++.+.+.+..+.........+++.++.-|+-.+... +....+..|-+.+.+.+.......+...++.++..+
T Consensus 63 ~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~aL 142 (961)
T PRK15101 63 AVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYRTAFYLEVENDALPPAV 142 (961)
T ss_pred CcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccceECCCceEEEEEcCHHHHHHHH
Confidence 58899999999988888888899999999999666532 222334456677777777788888899999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC-CCC--hHHHHhhCCCC----CHHHHHHH
Q 026844 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHL----EAEDLAKF 150 (232)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~l~~i----t~edl~~f 150 (232)
+.+.+.+.++.++++.+++-|..+..+++....+ |...+...+...+.++ .|+ ...-.+.|+.+ +.+|+++|
T Consensus 143 ~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~hp~~~~~~G~~etl~~~~~~~~~~~L~~f 221 (961)
T PRK15101 143 DRLADAIAEPLLDPKNADRERNAVNAELTMARSR-DGMRMAQVSAETINPAHPGSRFSGGNLETLSDKPGSKLQDALVDF 221 (961)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHhhCCCCCCcccCCCCCHHHhhcCCchHHHHHHHHH
Confidence 9999999999999999999999999999877554 8777777777677643 222 33445566665 79999999
Q ss_pred HHHHHhhHhhhheeccccH
Q 026844 151 VPMMLSRTFLECYIAGSII 169 (232)
Q Consensus 151 ~~~~~~~~~~~~lv~Gni~ 169 (232)
+++++...++.+.|.|++.
T Consensus 222 ~~~~Y~p~nm~lvv~G~~~ 240 (961)
T PRK15101 222 YQRYYSANLMKAVIYSNQP 240 (961)
T ss_pred HHHhCcccceEEEEEcCCC
Confidence 9999999999999999874
No 8
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.1e-05 Score=68.61 Aligned_cols=174 Identities=8% Similarity=0.076 Sum_probs=140.3
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccc-----ccccEEEEEeeCceeEEEEeeccchHHHHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQ-----VAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~-----~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~ 78 (232)
.+.+.+.+-|.++..+.++++.+.+.++.-|.-.....-.-.|. --|...+-+.+...-..-+..++.++|..++
T Consensus 52 a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytSReqT~yyakal~~dv~kavd 131 (467)
T KOG0960|consen 52 ASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVD 131 (467)
T ss_pred CcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhcccccccceeeehhhccccchHHHH
Confidence 46789999999999999999999999999987555533222222 2355555555666778889999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC---CCChHHHHhhCCCCCHHHHHHHHHHHH
Q 026844 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWMEELEVLPHLEAEDLAKFVPMML 155 (232)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~---~~~~~~~l~~l~~it~edl~~f~~~~~ 155 (232)
.+.+.+.+-++.+..+++-|.-++|+.+..... --...++++...-+++ ..+...-.+.+++|+.+|+++|+++.+
T Consensus 132 iLaDIlqns~L~~s~IerER~vILrEmqevd~~-~~eVVfdhLHatafQgtPL~~tilGp~enI~si~r~DL~~yi~thY 210 (467)
T KOG0960|consen 132 ILADILQNSKLEESAIERERDVILREMQEVDKN-HQEVVFDHLHATAFQGTPLGRTILGPSENIKSISRADLKDYINTHY 210 (467)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhcCCcccccccChhhhhhhhhHHHHHHHHHhcc
Confidence 999999999999999999999999999988766 4466777776665554 455667788999999999999999999
Q ss_pred hhHhhhheecccc-----HHHHHHHhcc
Q 026844 156 SRTFLECYIAGSI-----IQYIEDVFFK 178 (232)
Q Consensus 156 ~~~~~~~lv~Gni-----~~~i~~~l~~ 178 (232)
...++..-..|++ .+.+++.+..
T Consensus 211 ~~~RmVlaaaGgV~He~lv~la~k~fg~ 238 (467)
T KOG0960|consen 211 KASRMVLAAAGGVKHEELVKLAEKYFGD 238 (467)
T ss_pred cCccEEEEecCCcCHHHHHHHHHHHcCC
Confidence 9999999999955 4667777654
No 9
>PTZ00432 falcilysin; Provisional
Probab=97.33 E-value=0.0048 Score=61.01 Aligned_cols=167 Identities=11% Similarity=0.124 Sum_probs=115.8
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccccE--EEEEeeCceeEEEEeeccch-HHHH
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLD--YGINHTESGFEVTVVGYNHK-LRIL 76 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e-----~~y~A~~Agl~--~~i~~~~~g~~l~v~G~s~k-l~~l 76 (232)
|-..+.+.+.+|.. ...+++-++.-++-.+... ......--|++ .+...+.......+...+++ +..+
T Consensus 114 ~~~~f~i~f~T~~~----d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e~d~~~~ 189 (1119)
T PTZ00432 114 KEMCFDFYVPTPPH----NDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEKDFYNT 189 (1119)
T ss_pred ceeEEEEEecCCCC----CCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccCCCCceEEEeccCCHHHHHHH
Confidence 35667788888753 3467888888888655432 11111122332 34444455677778888864 9999
Q ss_pred HHHHHHHhhcCCCChhhH--HH---------H--------------------HHHHHHHhhhhcccChHHHHHHHHHHhc
Q 026844 77 LETIFQKIAQFKVKPDRF--SV---------I--------------------KEMVTKEYHNNKFLQPFQLAMYYCSLIL 125 (232)
Q Consensus 77 l~~i~~~l~~~~~~~~~F--~~---------~--------------------k~~~~~~~~n~~~~~p~~~a~~~~~~~l 125 (232)
+..+++.+.+|.++++.| .+ . |.-+..+++....+ |...+...+...+
T Consensus 190 ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~-p~~~~~~~~~~~l 268 (1119)
T PTZ00432 190 ADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSD-PLSFGYSVIYQNL 268 (1119)
T ss_pred HHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHHhhCC-HHHHHHHHHHHHH
Confidence 999999999999887753 32 0 33366677755555 9898888876666
Q ss_pred cCCCCC--hHHHHhhCCCCCHHHHHHHHHHHHhhHhhhheeccccH-----HHHHHHh
Q 026844 126 QDQTWP--WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGSII-----QYIEDVF 176 (232)
Q Consensus 126 ~~~~~~--~~~~l~~l~~it~edl~~f~~~~~~~~~~~~lv~Gni~-----~~i~~~l 176 (232)
....|. .-...+.|..+|+||+++|+++++...++.++++||+. +.+++.+
T Consensus 269 f~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f 326 (1119)
T PTZ00432 269 FSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYL 326 (1119)
T ss_pred hCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHH
Confidence 543333 45677889999999999999999999999999999873 3445554
No 10
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0024 Score=54.85 Aligned_cols=170 Identities=10% Similarity=0.058 Sum_probs=133.0
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHH
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~-----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~ 79 (232)
|-+.+.+.|.++..+..+.-...+.+.-.|.-.+.. |..-.-+..|=.++.+.+...+.-.++.+++.++.+++.
T Consensus 44 ~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~l 123 (472)
T KOG2067|consen 44 QFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVEL 123 (472)
T ss_pred CceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHH
Confidence 457888999999988888888888888877754442 444445556778888888888999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC------CCChHHHHhhCCCCCHHHHHHHHHH
Q 026844 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ------TWPWMEELEVLPHLEAEDLAKFVPM 153 (232)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~------~~~~~~~l~~l~~it~edl~~f~~~ 153 (232)
+.+.+.+|++++++.+..|..+.-+++..-+. |.....+.....-+.+ -+.+. +.+..|+.+.+.+|.+.
T Consensus 124 LadtV~~P~~~d~ev~~~~~~v~~E~~el~~~-Pe~lL~e~iH~Aay~~ntlg~pl~cp~---~~i~~I~~~~l~~yl~~ 199 (472)
T KOG2067|consen 124 LADTVLNPKFTDQEVEEARRAVKYEIEELWMR-PEPLLTEMIHSAAYSGNTLGLPLLCPE---ENIDKINREVLEEYLKY 199 (472)
T ss_pred HHHHHhcccccHHHHHHHHHhhhheccccccC-chhhHHHHHHHHHhccCcccccccCCh---hhhhhhhHHHHHHHHHh
Confidence 99999999999999999999888888877777 7555555554444432 34444 47788999999999999
Q ss_pred HHhhHhhhheecc----ccHHHHHHHhcc
Q 026844 154 MLSRTFLECYIAG----SIIQYIEDVFFK 178 (232)
Q Consensus 154 ~~~~~~~~~lv~G----ni~~~i~~~l~~ 178 (232)
++..-++..-.+| .+.+.+++.+..
T Consensus 200 ~ytp~rmVlA~vGV~heelv~~~~~~~~~ 228 (472)
T KOG2067|consen 200 FYTPERMVLAGVGVEHEELVEIAEKLLGD 228 (472)
T ss_pred cCChhheEeeecCCCHHHHHHHHHHHhcc
Confidence 9999998888888 344555565543
No 11
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=96.66 E-value=0.04 Score=47.49 Aligned_cols=158 Identities=10% Similarity=0.062 Sum_probs=120.9
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccccEEEEEeeCceeEEEEeeccchHHHHH
Q 026844 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (232)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e-----~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll 77 (232)
..|...+.+.|+.+..+.+..++.+.-|.........++ +...-+..|-..+...+..-+.+++.-..|.++..+
T Consensus 40 ~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe~~~~tvt~lrd~~~~~l 119 (429)
T KOG2583|consen 40 PTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATRELIGLTVTFLRDDLEYYL 119 (429)
T ss_pred CCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeecceEEEEEEEecccHHHHH
Confidence 368889999999999999988888888887777666554 555667778888888888899999999999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHH-HHHHHHhhhhcccChHHHHHHHHHHhccC-----CCCChHHHHhhCCCCCHHHHHHHH
Q 026844 78 ETIFQKIAQFKVKPDRFSVIK-EMVTKEYHNNKFLQPFQLAMYYCSLILQD-----QTWPWMEELEVLPHLEAEDLAKFV 151 (232)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k-~~~~~~~~n~~~~~p~~~a~~~~~~~l~~-----~~~~~~~~l~~l~~it~edl~~f~ 151 (232)
+.+.+.+.++.+.+=+.+... ..+. .... .+.|+.++++.+...-++ +.|++.- .+.+++.+|+..|.
T Consensus 120 ~~L~~V~~~paFkPwEl~D~~~~ti~--~~l~-~~t~~~~a~e~lH~aAfRngLgnslY~p~~---~vg~vss~eL~~Fa 193 (429)
T KOG2583|consen 120 SLLGDVLDAPAFKPWELEDVVLATID--ADLA-YQTPYTIAIEQLHAAAFRNGLGNSLYSPGY---QVGSVSSSELKDFA 193 (429)
T ss_pred HHHHHhhcccCcCchhhhhhhhhhhH--HHhh-hcChHHHHHHHHHHHHHhcccCCcccCCcc---cccCccHHHHHHHH
Confidence 999999999887775555544 2222 2223 445999999876555544 3455543 46789999999999
Q ss_pred HHHHhhHhhhheecc
Q 026844 152 PMMLSRTFLECYIAG 166 (232)
Q Consensus 152 ~~~~~~~~~~~lv~G 166 (232)
++.|-..++...-.|
T Consensus 194 ~k~fv~gn~~lvg~n 208 (429)
T KOG2583|consen 194 AKHFVKGNAVLVGVN 208 (429)
T ss_pred HHHhhccceEEEecC
Confidence 999987666665555
No 12
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=96.47 E-value=0.023 Score=50.48 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=88.9
Q ss_pred cccccEEEEEe-----eCceeEEEEeec----cchHHHHHHHHHHHhhcCC---CChhhHHHHHHHHHHHhhhhcccChH
Q 026844 47 QVAGLDYGINH-----TESGFEVTVVGY----NHKLRILLETIFQKIAQFK---VKPDRFSVIKEMVTKEYHNNKFLQPF 114 (232)
Q Consensus 47 ~~Agl~~~i~~-----~~~g~~l~v~G~----s~kl~~ll~~i~~~l~~~~---~~~~~F~~~k~~~~~~~~n~~~~~p~ 114 (232)
+..|+.|++++ ...|......|. .++....++.+++.+..-. +++++.+..|..+...+-..... |.
T Consensus 298 e~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s-~~ 376 (438)
T COG0612 298 EKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDS-PS 376 (438)
T ss_pred HhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCC-HH
Confidence 33456565552 123444333344 3667777887777777764 88999999998888888776555 88
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHhhCCCCCHHHHHHHHHHHHhhHhhhheeccc
Q 026844 115 QLAMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGS 167 (232)
Q Consensus 115 ~~a~~~~~~~l~-~~~~~~~~~l~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn 167 (232)
..+..+...... .+.-+.++..+.++.+|.+|+.++.++++........+.|.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p 430 (438)
T COG0612 377 SIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGP 430 (438)
T ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcc
Confidence 888888777776 45667899999999999999999999999887777777775
No 13
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.04 Score=47.60 Aligned_cols=139 Identities=14% Similarity=0.182 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHHHhhcC--CCChhhHHHH
Q 026844 21 SPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQKIAQF--KVKPDRFSVI 97 (232)
Q Consensus 21 s~~~~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~~l~~~--~~~~~~F~~~ 97 (232)
-|-+-+..+||..+++++- ..|.|.. |.-+.++.| +-|..+.--+..++.++.+...|.+. .+++++.+++
T Consensus 301 GPGKGMySrLY~~vLNry~--wv~sctA----fnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RA 374 (472)
T KOG2067|consen 301 GPGKGMYSRLYLNVLNRYH--WVYSCTA----FNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERA 374 (472)
T ss_pred CCCcchHHHHHHHHHhhhH--HHHHhhh----hhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3555667777777777653 3333332 333445667 57888888899999999999999886 4899999999
Q ss_pred HHHHHHHhh-hhcccChHHHHHHHHHHhccCC-CCChHHHHhhCCCCCHHHHHHHHHHHHhhHhhhheecccc
Q 026844 98 KEMVTKEYH-NNKFLQPFQLAMYYCSLILQDQ-TWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGSI 168 (232)
Q Consensus 98 k~~~~~~~~-n~~~~~p~~~a~~~~~~~l~~~-~~~~~~~l~~l~~it~edl~~f~~~~~~~~~~~~lv~Gni 168 (232)
|.|+...+- |.-.. | -.+-+.-+++|-.+ .-.++|.++.++++|.+|+..+..++++. ...+-..||+
T Consensus 375 K~qlkS~LlMNLESR-~-V~~EDvGRQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~-~p~va~~Gd~ 444 (472)
T KOG2067|consen 375 KTQLKSMLLMNLESR-P-VAFEDVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTG-KPSVAAFGDG 444 (472)
T ss_pred HHHHHHHHHhccccc-c-hhHHHHhHHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhcC-CceeccCCcc
Confidence 999888744 43333 5 33556667777655 56689999999999999999999998865 2333345654
No 14
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.11 Score=49.57 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEE---Eee-CceeEEEEeeccchHH-HHHHHHHHHhhcC-----CCC
Q 026844 21 SPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGI---NHT-ESGFEVTVVGYNHKLR-ILLETIFQKIAQF-----KVK 90 (232)
Q Consensus 21 s~~~~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i---~~~-~~g~~l~v~G~s~kl~-~ll~~i~~~l~~~-----~~~ 90 (232)
+.++.+++.|...++..-+-..+-.=+..|+-+-- ..+ .-|+.+.|..=+ +-| .|++++-..+..+ +.+
T Consensus 749 ~~~~~a~s~Ll~~l~~~~ff~~LRTkeQLGY~Vfs~~~~v~~~~gi~f~vqS~~-~~p~~L~~r~~~F~~~~~~~l~~ms 827 (937)
T COG1025 749 EIKSSALSSLLGQLIHPWFFDQLRTKEQLGYAVFSGPREVGRTPGIGFLVQSNS-KSPSYLLERINAFLETAEPELREMS 827 (937)
T ss_pred hHHHHHHHHHHHHHHhHHhHHHhhhhhhcceEEEecceeecCccceEEEEeCCC-CChHHHHHHHHHHHHHHHHHHHhCC
Confidence 68888888888888776654433333444442221 111 225655555333 223 2332222222221 368
Q ss_pred hhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCC--CC-hHHHHhhCCCCCHHHHHHHHHHHHhh---Hhhhhee
Q 026844 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT--WP-WMEELEVLPHLEAEDLAKFVPMMLSR---TFLECYI 164 (232)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~--~~-~~~~l~~l~~it~edl~~f~~~~~~~---~~~~~lv 164 (232)
+++|+..|+-++.++...... +-..|..+. ..+..+. |+ .+.++++++.+|.+++.+|..+.+.. ..+.+.|
T Consensus 828 ~e~Fe~~k~alin~il~~~~n-l~e~a~r~~-~~~~~g~~~Fd~~ek~i~~vk~LT~~~l~~f~~~~l~~~~g~~l~~~i 905 (937)
T COG1025 828 EEDFEQIKKALINQILQPPQN-LAEEASRLW-KAFGRGNLDFDHREKKIEAVKTLTKQKLLDFFENALSYEQGSKLLSHI 905 (937)
T ss_pred HHHHHHHHHHHHHHHHccCCC-HHHHHHHHH-HHhccCCCCcCcHHHHHHHHHhcCHHHHHHHHHHhhcccccceeeeee
Confidence 999999999999888876554 666666666 4555554 44 67788999999999999999988743 4556666
Q ss_pred cc
Q 026844 165 AG 166 (232)
Q Consensus 165 ~G 166 (232)
.|
T Consensus 906 ~g 907 (937)
T COG1025 906 RG 907 (937)
T ss_pred ec
Confidence 66
No 15
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=95.37 E-value=0.15 Score=38.64 Aligned_cols=96 Identities=13% Similarity=0.233 Sum_probs=53.2
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccc--cc--ccEEEEEee---C-ceeEEEEeeccchHHHH
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQ--VA--GLDYGINHT---E-SGFEVTVVGYNHKLRIL 76 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~--~A--gl~~~i~~~---~-~g~~l~v~G~s~kl~~l 76 (232)
+...+.+.+..+.. .+........++..++.......++... .. +.++..+.. + .-+.+.+.+-.++...+
T Consensus 78 ~~~~v~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (184)
T PF05193_consen 78 SQSIVSIAFPGPPI-KDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPENLDEA 156 (184)
T ss_dssp SSEEEEEEEEEEET-GTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGGGHHHH
T ss_pred cccccccccccccc-cccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcccHHHH
Confidence 34445555544433 2444555666677777666222222111 11 222222211 2 23678888887787777
Q ss_pred HHHHHHHhhcC---CCChhhHHHHHHHH
Q 026844 77 LETIFQKIAQF---KVKPDRFSVIKEMV 101 (232)
Q Consensus 77 l~~i~~~l~~~---~~~~~~F~~~k~~~ 101 (232)
++.+.+.+... .+++++|+++|.++
T Consensus 157 ~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 157 IEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 77766666553 59999999999875
No 16
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=94.86 E-value=0.026 Score=42.85 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHhhHhhhheeccccH
Q 026844 141 HLEAEDLAKFVPMMLSRTFLECYIAGSII 169 (232)
Q Consensus 141 ~it~edl~~f~~~~~~~~~~~~lv~Gni~ 169 (232)
++|.+|+.+|+++++.+.++.++++||+.
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~ 29 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDID 29 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSG
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCcc
Confidence 58999999999999999999999999875
No 17
>PTZ00432 falcilysin; Provisional
Probab=94.58 E-value=0.42 Score=47.68 Aligned_cols=161 Identities=11% Similarity=0.086 Sum_probs=104.6
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhhhc-------ccccccEEEEEeeC--------------ceeEEE
Q 026844 8 FVKIYFNCPHASSSPESEVLTDIFTRLLLDY-LNEYAYY-------AQVAGLDYGINHTE--------------SGFEVT 65 (232)
Q Consensus 8 ~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~-l~e~~y~-------A~~Agl~~~i~~~~--------------~g~~l~ 65 (232)
.+++++..+...-+....-+..||+.++... .....|. ...-|+++++.... ..+.++
T Consensus 681 i~y~~~~fdl~~l~~e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 760 (1119)
T PTZ00432 681 ILYLDFAFSLDSLTVDELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLNVR 760 (1119)
T ss_pred eEEEEEEecCCCCCHHHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEeccccccccCcccccceEEEEE
Confidence 4455555544455677888889999998652 2222222 23346665543322 158999
Q ss_pred EeeccchHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC-----CCC---hHHHH
Q 026844 66 VVGYNHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-----TWP---WMEEL 136 (232)
Q Consensus 66 v~G~s~kl~~ll~~i~~~l~~~~~~~-~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-----~~~---~~~~l 136 (232)
+.+.++|++.+++.+.+.+.+..++. ++...+-+++..++++......+..|......-+... .++ .-..+
T Consensus 761 ~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~~~~~e~~~G~~~~~fl 840 (1119)
T PTZ00432 761 AKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSVSDYADELVNGYSQLLFL 840 (1119)
T ss_pred EEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999875 4588888888888888877667777776554433321 111 11222
Q ss_pred hhCC----CCC----HHHHHHHHHHHHhhHhhhheecccc
Q 026844 137 EVLP----HLE----AEDLAKFVPMMLSRTFLECYIAGSI 168 (232)
Q Consensus 137 ~~l~----~it----~edl~~f~~~~~~~~~~~~lv~Gni 168 (232)
..|. +-. .+.+....+.+++...+.+.++|+.
T Consensus 841 ~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~ 880 (1119)
T PTZ00432 841 KETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDS 880 (1119)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCH
Confidence 2211 111 2335667777788888899999954
No 18
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=94.53 E-value=0.72 Score=44.57 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=98.8
Q ss_pred ceeEEEEEEeCCCC-----CCCHHHHHHH--------HHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccc
Q 026844 5 PKAFVKIYFNCPHA-----SSSPESEVLT--------DIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNH 71 (232)
Q Consensus 5 Pk~~i~~~i~~~~~-----~~s~~~~~l~--------~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~ 71 (232)
|....+|.|.++.- ....++.+++ +.|..|++.+|+.++=...-++ +.+++-.. .+ .+
T Consensus 41 ~~~vFsi~F~T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D--~T~YP~sS------~~-~~ 111 (978)
T COG1026 41 PNNVFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPD--KTVYPASS------AN-EK 111 (978)
T ss_pred cCceEEEEeecCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCC--cceeeccc------cC-cc
Confidence 44556666766442 2345556665 5788888888876433322222 22222110 01 12
Q ss_pred hHHHHHHHHHHHhhcCCCChhhHHHHHHH--------------HHHHhhhhcccChHHHHHHHHHHhccCC-C--CChHH
Q 026844 72 KLRILLETIFQKIAQFKVKPDRFSVIKEM--------------VTKEYHNNKFLQPFQLAMYYCSLILQDQ-T--WPWME 134 (232)
Q Consensus 72 kl~~ll~~i~~~l~~~~~~~~~F~~~k~~--------------~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~--~~~~~ 134 (232)
..-.|+...+|.+.+|-.+++.|.+=-=+ +-.+.++...+ |.......+...+.++ . +..-.
T Consensus 112 Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss-~~~~~~~~~~~slfp~~ty~~~SGG 190 (978)
T COG1026 112 DFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSS-GESVLSRAMQQSLFPGTTYGVNSGG 190 (978)
T ss_pred hHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccC-chhHHHHHHHHhhCCCccccccCCC
Confidence 34567788888888888887777642211 12233334444 7777888888888875 2 33446
Q ss_pred HHhhCCCCCHHHHHHHHHHHHhhHhhhheecccc
Q 026844 135 ELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGSI 168 (232)
Q Consensus 135 ~l~~l~~it~edl~~f~~~~~~~~~~~~lv~Gni 168 (232)
.-..+..+|+|++.+|+++++...++-.++.||+
T Consensus 191 ~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni 224 (978)
T COG1026 191 DPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNI 224 (978)
T ss_pred CcccccccCHHHHHHHHHHhCCccceEEEEECCC
Confidence 6678999999999999999999999999999987
No 19
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=93.35 E-value=1.7 Score=42.08 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=103.3
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-hhhcc-------cccccEEEEEeeCc---------eeEEEEeecc
Q 026844 8 FVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-YAYYA-------QVAGLDYGINHTES---------GFEVTVVGYN 70 (232)
Q Consensus 8 ~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e-~~y~A-------~~Agl~~~i~~~~~---------g~~l~v~G~s 70 (232)
.+++++.-+...-+..-.-+..||+..+.....+ ..|.. ..-|++.+.++..+ .+.+++...+
T Consensus 548 i~yl~~~~~~~~l~~~llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~ 627 (978)
T COG1026 548 ITYLRLYFDLDMLPSELLPYLPLFAFALTNLGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALR 627 (978)
T ss_pred eEEEEEEeecCCCChhhhhhHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehh
Confidence 3344443333344555566777888877664322 22221 11245544443321 4888888899
Q ss_pred chHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC--------CCChHHHHhhCCC
Q 026844 71 HKLRILLETIFQKIAQFKV-KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ--------TWPWMEELEVLPH 141 (232)
Q Consensus 71 ~kl~~ll~~i~~~l~~~~~-~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~--------~~~~~~~l~~l~~ 141 (232)
+|...+++.|-+.+.+..+ |.+|...+-+++..++.+...+.+...|......-+... .-+....+.+|.+
T Consensus 628 ~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~ 707 (978)
T COG1026 628 SKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRELSS 707 (978)
T ss_pred hhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHHHH
Confidence 9999999999999999998 778888888888888888888878777777654444321 1222233333322
Q ss_pred -----CC---HHHHHHHHHHHHhhHhhhheeccccH
Q 026844 142 -----LE---AEDLAKFVPMMLSRTFLECYIAGSII 169 (232)
Q Consensus 142 -----it---~edl~~f~~~~~~~~~~~~lv~Gni~ 169 (232)
.. .+-+++.++.++....+.+++.|++.
T Consensus 708 ~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~ 743 (978)
T COG1026 708 NFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDID 743 (978)
T ss_pred hhcccccHHHHHHHHHHHHHHhhcCceEEEEecChh
Confidence 11 23466777788888788889999664
No 20
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=1.8 Score=37.68 Aligned_cols=116 Identities=12% Similarity=0.144 Sum_probs=89.7
Q ss_pred EEEEEeeCcee-EEEEee-ccchHHHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHhhhh-cccChHHHHHHHHHHhcc
Q 026844 52 DYGINHTESGF-EVTVVG-YNHKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNN-KFLQPFQLAMYYCSLILQ 126 (232)
Q Consensus 52 ~~~i~~~~~g~-~l~v~G-~s~kl~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n~-~~~~p~~~a~~~~~~~l~ 126 (232)
++++...+.|+ -+.+-. =.+.+..++..++...... .+++.+-+++|.++...+--. ....| .|.+..+++|.
T Consensus 329 sFnt~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttp--i~ediGrqlL~ 406 (467)
T KOG0960|consen 329 SFNTSYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTP--IAEDIGRQLLT 406 (467)
T ss_pred hhhcccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHhh
Confidence 66676667774 455555 5567888888888877665 489999999999999885544 34445 47888888877
Q ss_pred CC-CCChHHHHhhCCCCCHHHHHHHHHHHHhhHhhhheeccccH
Q 026844 127 DQ-TWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGSII 169 (232)
Q Consensus 127 ~~-~~~~~~~l~~l~~it~edl~~f~~~~~~~~~~~~lv~Gni~ 169 (232)
.+ ..++.|+-+.++.||.+|+++...+++-.-.+-+..+|.+.
T Consensus 407 ~Grri~l~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 407 YGRRIPLAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred cCCcCChHHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 54 77889999999999999999999998877778888888753
No 21
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=90.28 E-value=0.97 Score=37.02 Aligned_cols=123 Identities=15% Similarity=0.244 Sum_probs=72.1
Q ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhhh-------cccccccEEEEEeeC---------ceeEEEEeec
Q 026844 7 AFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-LNEYAY-------YAQVAGLDYGINHTE---------SGFEVTVVGY 69 (232)
Q Consensus 7 ~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~-l~e~~y-------~A~~Agl~~~i~~~~---------~g~~l~v~G~ 69 (232)
+++.+.|..+ .-+.+..-+..||+.++... +....| ....-|+++++.... .++.++..+.
T Consensus 92 ~Y~~l~fdl~--~l~~e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L 169 (248)
T PF08367_consen 92 VYVRLYFDLS--DLPEEDLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKCL 169 (248)
T ss_dssp EEEEEEEE-T--TS-CCCHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEEE
T ss_pred EEEEEEecCC--CCCHHHHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEeH
Confidence 3444445444 34555667777888877442 222222 223346766663322 1589999999
Q ss_pred cchHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCChHHHH
Q 026844 70 NHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEEL 136 (232)
Q Consensus 70 s~kl~~ll~~i~~~l~~~~~~~-~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l 136 (232)
++|++.+++.+-+.|.+..+++ ++...+-.+....+++....+.+..|.... ...++....+
T Consensus 170 ~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~~~~i~~~Gh~~A~~ra-----~s~~s~~~~~ 232 (248)
T PF08367_consen 170 DEKLDEAFELLSEILTETDFDDKERLKELLKELKSDMESSIISSGHSYAMSRA-----SSYLSRSGAL 232 (248)
T ss_dssp GGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC-----CCTT-HHHHH
T ss_pred hhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-----HhcCCHHHHH
Confidence 9999999999999999999865 466666666666666665554444443332 3345555444
No 22
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=5.2 Score=39.17 Aligned_cols=159 Identities=12% Similarity=0.002 Sum_probs=103.8
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh----hhhhhccccc--ccEEEEEeeCceeEEEEeeccchHHHHHHHHH
Q 026844 8 FVKIYFNCPHASSSPESEVLTDIFTRLLLDYL----NEYAYYAQVA--GLDYGINHTESGFEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 8 ~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l----~e~~y~A~~A--gl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~ 81 (232)
...+....+...+....+++|-+.--|+=-+. .|-.|...++ |-+.+.......-...+.-=.++++..|+.+.
T Consensus 51 saal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~T~~e~T~y~F~V~~~~l~~ALDrFa 130 (974)
T KOG0959|consen 51 SAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAYTDSEHTNYYFDVQHDHLEGALDRFA 130 (974)
T ss_pred ceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccccccccceEEEecchHHHHHHHHHHH
Confidence 34444555555556666888887777774333 2323333333 22333333333333444446788999999999
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC-CCC--hHHHHhhCCCCC-----HHHHHHHHHH
Q 026844 82 QKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLE-----AEDLAKFVPM 153 (232)
Q Consensus 82 ~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~l~~it-----~edl~~f~~~ 153 (232)
+.+..|.++++.-++=+..+.-++++.....- ..-..+...+-.++ .++ .....+.|.+.. .+.+..|+++
T Consensus 131 qFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~-wr~~ql~~~l~~~~hp~~kF~tGN~~tL~~~p~~~~~r~~L~kF~k~ 209 (974)
T KOG0959|consen 131 QFFSDPLFNKSATEREVGAVDSEHEKNLNSDG-WRFDQLLRSLSNPGHPYSKFSTGNKKTLLEGPREIDLRDELLKFYKN 209 (974)
T ss_pred HHhhCcccChHHHHHHHHHHHHHHHhccCcch-hHHHHHHHHhcCCCCcchhccccchhhhhhccccchHHHHHHHHHHh
Confidence 99999999999999988889999998877633 33333443444433 222 234444555555 8899999999
Q ss_pred HHhhHhhhheeccc
Q 026844 154 MLSRTFLECYIAGS 167 (232)
Q Consensus 154 ~~~~~~~~~lv~Gn 167 (232)
+++...+.+.|.|+
T Consensus 210 ~Yssn~M~l~i~G~ 223 (974)
T KOG0959|consen 210 WYSSNIMTLVIVGK 223 (974)
T ss_pred hcccccceEEEEcC
Confidence 99999999999993
No 23
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=70.98 E-value=11 Score=35.46 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=72.9
Q ss_pred eEEEEeeccchHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC---CCCh-----H
Q 026844 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPW-----M 133 (232)
Q Consensus 62 ~~l~v~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~---~~~~-----~ 133 (232)
++++|..=.++-+.++..+-..+...-++++|-.+.-++++.+......+ .-..+..+....++.. .++. +
T Consensus 636 vn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRd-g~~vlss~~~~~lY~~~slk~s~d~L~~E 714 (1022)
T KOG0961|consen 636 VNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRD-GCTVLSSAVASMLYGKNSLKISFDELVLE 714 (1022)
T ss_pred eeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcC-ccEehHHHHHHHHhcccchhhcccHHHHH
Confidence 67888888888889999998889888899999999999999888877666 4445555555555432 2332 2
Q ss_pred HHHhhC----CC---CCHHHHHHHHHHHHhhHhhhheeccccHH
Q 026844 134 EELEVL----PH---LEAEDLAKFVPMMLSRTFLECYIAGSIIQ 170 (232)
Q Consensus 134 ~~l~~l----~~---it~edl~~f~~~~~~~~~~~~lv~Gni~~ 170 (232)
.+++.+ ++ -=++.++...+-.+....+.+.|.|+|.+
T Consensus 715 k~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~k 758 (1022)
T KOG0961|consen 715 KLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDK 758 (1022)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhc
Confidence 222222 11 11444555555344566788999998864
No 24
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=70.85 E-value=19 Score=28.34 Aligned_cols=55 Identities=7% Similarity=0.097 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEE--EEEeeCceeEEE-EeeccchH
Q 026844 19 SSSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDY--GINHTESGFEVT-VVGYNHKL 73 (232)
Q Consensus 19 ~~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~--~i~~~~~g~~l~-v~G~s~kl 73 (232)
..+.+..+++.++.++++..+. -+.|.-++.|..| .....++++.|+ .-|||+-.
T Consensus 59 ~~~kk~~al~Gt~rslI~NMI~GVt~GF~k~L~ivgvgyp~ra~v~g~~l~l~N~LG~sh~~ 120 (189)
T PTZ00179 59 FGSKIPNSTINTALSHVRNMITGVTKGFRFKVRFAYAHFPISVSVENQLVEIRNFLGEKRVR 120 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcCCEEEEEEEEEeCcceEEEEcCCEEEEEecCCCCccE
Confidence 3457778899999999988763 4888889999999 777777787776 78999643
No 25
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=67.06 E-value=37 Score=26.36 Aligned_cols=53 Identities=15% Similarity=0.362 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEEeeCceeEEEEeeccch
Q 026844 19 SSSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHK 72 (232)
Q Consensus 19 ~~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~k 72 (232)
..+.+..++...+.++++..+. -+.|.-.+.|..|.+...++.+.| .-|||+-
T Consensus 56 ~~~k~~~a~~gt~~slI~Nmi~GVt~Gf~~~L~lvGvGyr~~~~g~~l~l-~LG~sh~ 112 (178)
T CHL00140 56 DESKKARALHGLYRTLINNMVIGVSEGFEKKLELQGVGYRAQVQGKDLIL-NLGYSHP 112 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEEEEEEeCCcEEE-EecCCee
Confidence 3456777888999999888764 477888888999998888888888 7788853
No 26
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=65.96 E-value=37 Score=26.23 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEEeeCceeEEEEeeccch
Q 026844 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHK 72 (232)
Q Consensus 20 ~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~k 72 (232)
.+.+..+++..+..+++..+. -+.|.-.+.|..|.+...++.+.+ .-|||+.
T Consensus 56 ~~kk~~a~~gt~~s~i~Nmi~GVt~Gf~~~L~lvGvgyrv~~~g~~l~l-~LG~sh~ 111 (175)
T TIGR03654 56 DSKEARALHGTTRALINNMVIGVSEGFEKKLEIVGVGYRAQLQGKKLNL-SLGYSHP 111 (175)
T ss_pred CCHHHHHHHHHHHHHHHHHhheeccCcEEEEEEEEEEEEEEEeCCeEEE-EecCcee
Confidence 456678899999999988764 477888889999999888888888 7788864
No 27
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=65.40 E-value=34 Score=26.65 Aligned_cols=55 Identities=5% Similarity=0.205 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEE--EEEeeCceeEEE-EeeccchH
Q 026844 19 SSSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDY--GINHTESGFEVT-VVGYNHKL 73 (232)
Q Consensus 19 ~~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~--~i~~~~~g~~l~-v~G~s~kl 73 (232)
..+.+..++..++..+++..+. -+.|.-++.|..| .....++++.++ .-|||+-.
T Consensus 58 ~~~kk~ra~~gt~rslI~NmI~GVt~Gf~~~LelvGvGypira~~~g~~l~l~n~LG~Sh~v 119 (180)
T PRK05518 58 FARKKTKAMVGTFASHIKNMIKGVTEGFEYKLKIVYSHFPMQVKVQGNEVVIENFLGEKSPR 119 (180)
T ss_pred CCCHHHHHHHHHHHHHHHhhheecccceEEEEEEEecCccEEEEEcCCEEEEEeccccceeE
Confidence 3567778999999999988763 4777788888888 555556666654 57998643
No 28
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=64.25 E-value=39 Score=26.02 Aligned_cols=54 Identities=6% Similarity=0.202 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEE--EEEeeCceeEEE-EeeccchH
Q 026844 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDY--GINHTESGFEVT-VVGYNHKL 73 (232)
Q Consensus 20 ~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~--~i~~~~~g~~l~-v~G~s~kl 73 (232)
.+.+..++..++..+++..+. -+.+.-++.|..| .....++++.++ .-|||+-.
T Consensus 53 ~~k~~~a~~gt~rsli~NmI~GVt~Gf~~~LeivGvGy~~ra~~~g~~L~l~n~LG~Sh~i 113 (170)
T TIGR03653 53 ARKKDKAMVGTYRSHIKNMIKGVTEGFEYKMKVVYSHFPMQVKVEGNKVVIENFLGEKAPR 113 (170)
T ss_pred CCHHHHHHHHHHHHHHHhheeecccCeEEEEEEEeccccEEEEEcCCeEEEeeccccceeE
Confidence 457778899999999988763 4777788888888 555555666654 47888643
No 29
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=63.46 E-value=1.3e+02 Score=28.92 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=91.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccccc-ccE--EEEEeeCc------eeEEEEeecc----chHHHHH
Q 026844 11 IYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVA-GLD--YGINHTES------GFEVTVVGYN----HKLRILL 77 (232)
Q Consensus 11 ~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~~A-gl~--~~i~~~~~------g~~l~v~G~s----~kl~~ll 77 (232)
+.+.++.. .+...+-...++..++-+.-+.-.|.|.+- |+. ++..+.-+ -+.+-+.|-+ +|+..++
T Consensus 317 ~s~L~~~p-~d~~etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV 395 (998)
T KOG2019|consen 317 NSFLSNDP-LDTYETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELV 395 (998)
T ss_pred EEeecCCc-hhHHHHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHH
Confidence 33444433 344556666778888888888888888664 554 44433222 3788899999 5778888
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC-CCC---hHHHHhhCCCC----CHHHHHH
Q 026844 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP---WMEELEVLPHL----EAEDLAK 149 (232)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~---~~~~l~~l~~i----t~edl~~ 149 (232)
..+++.+..-.++.++-|.+-.++.-+++......-..++.+.....+... .+. .++.++.++.- +-.=|+.
T Consensus 396 ~~t~~~lae~gfd~drieAil~qiEislk~qst~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~ 475 (998)
T KOG2019|consen 396 MNTFNKLAETGFDNDRIEAILHQIEISLKHQSTGFGLSLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQP 475 (998)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhhhhhhccccchhHHHHHHHhhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHH
Confidence 888888888889999999999999888887766644555555554444432 222 34444444321 2223555
Q ss_pred HHHHHH
Q 026844 150 FVPMML 155 (232)
Q Consensus 150 f~~~~~ 155 (232)
.+++++
T Consensus 476 lIkkYi 481 (998)
T KOG2019|consen 476 LIKKYI 481 (998)
T ss_pred HHHHHH
Confidence 556655
No 30
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=62.62 E-value=47 Score=25.76 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEEeeCceeEEEEeeccch
Q 026844 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHK 72 (232)
Q Consensus 20 ~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~k 72 (232)
.+.+..+++..+.++++..+. -+.|.-.+.|..|.+...++.+.+ .-||++-
T Consensus 57 ~~k~~~a~~gt~~s~I~Nmi~GVt~Gf~~~L~lvGvgyrv~~~g~~l~l-~LG~sh~ 112 (178)
T PRK05498 57 DSKKARALHGTTRALINNMVVGVTEGFEKKLEIVGVGYRAQVKGKKLNL-SLGYSHP 112 (178)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEEeEEEEEEEeCCeEEE-EecCCEE
Confidence 456667888999998888764 477888888999988888888888 7788863
No 31
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=62.04 E-value=24 Score=33.40 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHH----------HHHHhhhhcccChHHHHHHHHHHhccCC----CCChHHHHhh
Q 026844 73 LRILLETIFQKIAQFKVKPDRFSVIKEM----------VTKEYHNNKFLQPFQLAMYYCSLILQDQ----TWPWMEELEV 138 (232)
Q Consensus 73 l~~ll~~i~~~l~~~~~~~~~F~~~k~~----------~~~~~~n~~~~~p~~~a~~~~~~~l~~~----~~~~~~~l~~ 138 (232)
+-.++-..++.+.+|.++++.|..-.-. +-.+.++...+ -..........+++++ .+..-.+.+.
T Consensus 111 FlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~-~~~im~~~~~~~~yP~~sgY~~eTGG~~kn 189 (1022)
T KOG0961|consen 111 FLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESE-MESIMDRKTKEVIYPPFSGYAVETGGRLKN 189 (1022)
T ss_pred hHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcc-cchhhhhhhheeecCCCCCceeccCCChhh
Confidence 3445555666777777777666532211 11222222222 1222233345555553 2334578889
Q ss_pred CCCCCHHHHHHHHHHHHhhHhhhheecccc
Q 026844 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGSI 168 (232)
Q Consensus 139 l~~it~edl~~f~~~~~~~~~~~~lv~Gni 168 (232)
|..+|.|.+++|++.++...++-+.|-|++
T Consensus 190 LR~lt~ekIR~yHK~~Y~~sN~cviVcG~v 219 (1022)
T KOG0961|consen 190 LRELTLEKIRDYHKKFYHLSNMCVIVCGMV 219 (1022)
T ss_pred HHHhhHHHHHHHHHHhccccceEEEEecCc
Confidence 999999999999999999999999999965
No 32
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=54.17 E-value=75 Score=24.98 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEE--eeCce--eEEE-EeeccchH
Q 026844 19 SSSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGIN--HTESG--FEVT-VVGYNHKL 73 (232)
Q Consensus 19 ~~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~~i~--~~~~g--~~l~-v~G~s~kl 73 (232)
..+.+..++..++.++++..+. -+.|.-++.|..|... ...+| +.|+ .-|||+-.
T Consensus 60 ~~~~k~~a~~Gt~rslI~NmI~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i 123 (190)
T PTZ00027 60 FGTPSHLACIRTVCSHIKNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVR 123 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeE
Confidence 4557778899999999988763 4888999999999988 42355 6665 68999643
No 33
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=52.40 E-value=35 Score=18.10 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHH
Q 026844 78 ETIFQKIAQFKVKPDRFSVIKEMVT 102 (232)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~ 102 (232)
..+-+....-.+++++|+..|.+++
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 3444445555689999999998875
No 34
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=50.95 E-value=1.6e+02 Score=28.24 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=96.7
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-h-----hhhh--hcccccccEEEEEeeC-ce-----eEEEEeecc--ch
Q 026844 9 VKIYFNCPHASSSPESEVLTDIFTRLLLDY-L-----NEYA--YYAQVAGLDYGINHTE-SG-----FEVTVVGYN--HK 72 (232)
Q Consensus 9 i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~-l-----~e~~--y~A~~Agl~~~i~~~~-~g-----~~l~v~G~s--~k 72 (232)
++++...+.-.-.-+-.-+.-|||+.+-+. . .|.. -.-..-|++.+-..+. +| ..|-++|+. -+
T Consensus 583 ~Y~r~~~~l~~~p~eL~PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn 662 (998)
T KOG2019|consen 583 TYTRVVFDLNSLPEELLPYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSMLDRN 662 (998)
T ss_pred EEEEEeeccccCcHHhhcchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhhcCC
Confidence 344444433332333344566777766442 2 1211 1122235665543322 12 336666664 45
Q ss_pred HHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCChH--------HHHhhCCCCC
Q 026844 73 LRILLETIFQKIAQFKV-KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWM--------EELEVLPHLE 143 (232)
Q Consensus 73 l~~ll~~i~~~l~~~~~-~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~--------~~l~~l~~it 143 (232)
.+.+++..-..+.+..+ ++++|.++..+...+..|..-+.-...|.......+....|-.+ +.+..|++..
T Consensus 663 ~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~~~~ 742 (998)
T KOG2019|consen 663 ADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLEEKV 742 (998)
T ss_pred hhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHHHHh
Confidence 77777777777777665 56899999999999999998776677777766667766555443 2334443333
Q ss_pred -------HHHHHHHHHHHHhhHhhhheecc------ccHHHHHHHhcc
Q 026844 144 -------AEDLAKFVPMMLSRTFLECYIAG------SIIQYIEDVFFK 178 (232)
Q Consensus 144 -------~edl~~f~~~~~~~~~~~~lv~G------ni~~~i~~~l~~ 178 (232)
.+.+.+..+.+++...+.+.|.- +..+.+++.+..
T Consensus 743 d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~ 790 (998)
T KOG2019|consen 743 DNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDS 790 (998)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHh
Confidence 22344455556666566666554 344667666643
No 35
>PRK14425 acylphosphatase; Provisional
Probab=48.08 E-value=34 Score=23.51 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=32.3
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~ 82 (232)
..|...|+.=.+....+| +++.+.|-.+.+..|+..+-+
T Consensus 27 ~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 27 DEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred HHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 346677888888888888 999999999998888887753
No 36
>PRK14420 acylphosphatase; Provisional
Probab=46.76 E-value=43 Score=22.72 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=31.4
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~~ 83 (232)
.|...|+.=.+....+| +++.+.|-.+++..|++.+-+.
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~ 63 (91)
T PRK14420 24 EADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEKG 63 (91)
T ss_pred HHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 46667777778888888 9999999998888888777654
No 37
>PRK14429 acylphosphatase; Provisional
Probab=46.57 E-value=41 Score=22.79 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=32.0
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~ 82 (232)
..|...|++=.+....+| +++.+.|-.+++..++..+-+
T Consensus 23 ~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 23 TKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred HHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 346677888788888888 999999999998888877764
No 38
>PRK14430 acylphosphatase; Provisional
Probab=45.58 E-value=38 Score=23.17 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=30.6
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i 80 (232)
..|...|+.=.+....+| +++.+.|-.+++..|+..+
T Consensus 25 ~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 25 DAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred HHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 456677887777777888 9999999999998888777
No 39
>PF10978 DUF2785: Protein of unknown function (DUF2785); InterPro: IPR021247 Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.
Probab=45.26 E-value=1.3e+02 Score=23.22 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=55.5
Q ss_pred ceeEEEEeeccchHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhhh----hcccChHHHHHHHHHHhccCCCCChHHH
Q 026844 60 SGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN----NKFLQPFQLAMYYCSLILQDQTWPWMEE 135 (232)
Q Consensus 60 ~g~~l~v~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n----~~~~~p~~~a~~~~~~~l~~~~~~~~~~ 135 (232)
+|+. .=.||-+.+...-..+.+.+.++.++...-..+-.-+.+.++. +..+.+...|.... .++..+..+.++.
T Consensus 59 RGfv-~~~GWaHa~AH~aD~l~el~~~p~~~~~~~~~lL~~i~~~~~~~~~~~~~~EdeRLa~~~~-~~l~~~~l~~~~~ 136 (175)
T PF10978_consen 59 RGFV-EEKGWAHAFAHGADLLDELVQHPELDRADKIELLAAILEKYKRLSTPFIDGEDERLATALI-ELLNRNKLYQEEL 136 (175)
T ss_pred ccCC-ccCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCcceeCCChhHHHHHHH-HHHHcCCCCHHHH
Confidence 4543 5679999999999999999999999887777666666666665 23444666665554 4555555666666
Q ss_pred HhhCCCC
Q 026844 136 LEVLPHL 142 (232)
Q Consensus 136 l~~l~~i 142 (232)
...|+.+
T Consensus 137 ~~wl~~~ 143 (175)
T PF10978_consen 137 LSWLKSW 143 (175)
T ss_pred HHHHHHH
Confidence 5555544
No 40
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=44.47 E-value=49 Score=21.40 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhcc--CCCCChHHHHhhCCCCCHHHHHHHHHHH
Q 026844 113 PFQLAMYYCSLILQ--DQTWPWMEELEVLPHLEAEDLAKFVPMM 154 (232)
Q Consensus 113 p~~~a~~~~~~~l~--~~~~~~~~~l~~l~~it~edl~~f~~~~ 154 (232)
+..++...+..... .+..+...++++|..+...|+.+.+++.
T Consensus 39 ~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~~~~d~~~~i~~~ 82 (83)
T PF00531_consen 39 LREQTYEMLQRWRQREGPNATVDQLIQALRDIGRNDLAEKIEQM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHCCcHHHHHHHHhh
Confidence 34445555443333 4678899999999999999998877654
No 41
>PRK14431 acylphosphatase; Provisional
Probab=44.17 E-value=46 Score=22.57 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=30.7
Q ss_pred cccccccEEEEEeeCceeEEEEeeccchHHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQ 82 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~~ 82 (232)
.|...|++=.+...++|+++.+.|-.+.+..++..+.+
T Consensus 24 ~A~~~gl~G~V~N~~dgVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 24 IAMNYNIVGTVQNVDDYVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred HHhhcCCEEEEEECCCcEEEEEEcCHHHHHHHHHHHhc
Confidence 46667887777777779999999999998888877765
No 42
>PRK14440 acylphosphatase; Provisional
Probab=43.72 E-value=43 Score=22.75 Aligned_cols=37 Identities=32% Similarity=0.343 Sum_probs=29.8
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| +++.+.|-.+++..|+..+-
T Consensus 25 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 62 (90)
T PRK14440 25 HAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 62 (90)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 46667777777877888 99999999988888887765
No 43
>PRK14449 acylphosphatase; Provisional
Probab=42.16 E-value=53 Score=22.26 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=31.0
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~~ 83 (232)
.|...|+.=.+....+| +++.+.|-.+++..|+..+-+.
T Consensus 25 ~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~~ 64 (90)
T PRK14449 25 KAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKTG 64 (90)
T ss_pred HHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhhC
Confidence 35566777778888888 9999999999988888777654
No 44
>PRK14435 acylphosphatase; Provisional
Probab=41.45 E-value=50 Score=22.39 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=29.9
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|++=.+....+| +++.+.|-.+++..+++.+-
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 61 (90)
T PRK14435 24 VAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVA 61 (90)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 46667787777777777 99999999999888887775
No 45
>PRK14444 acylphosphatase; Provisional
Probab=41.12 E-value=49 Score=22.57 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=31.1
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
..|...|++=.+....+| +++.+.|-.+++..|++.+-
T Consensus 25 ~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (92)
T PRK14444 25 DRAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCY 63 (92)
T ss_pred HHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHH
Confidence 356677887778888889 89999999999888887755
No 46
>PRK14445 acylphosphatase; Provisional
Probab=40.89 E-value=59 Score=22.09 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=31.3
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
..|...|+.=.+....+| +++.+.|=.+++..++..+-
T Consensus 25 ~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 25 RAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred HHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 356777888888888888 99999999888888877774
No 47
>PRK14436 acylphosphatase; Provisional
Probab=40.44 E-value=52 Score=22.38 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=30.2
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|++=.+....+| +++.+.|-.+++..++..+-
T Consensus 26 ~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14436 26 EARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_pred HHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHh
Confidence 46667787778888888 99999999999888888664
No 48
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=40.04 E-value=55 Score=21.66 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=14.1
Q ss_pred HHHHHHHHhcc-CCCCChHHHHhhC
Q 026844 116 LAMYYCSLILQ-DQTWPWMEELEVL 139 (232)
Q Consensus 116 ~a~~~~~~~l~-~~~~~~~~~l~~l 139 (232)
++-+++..++. +..|+.+++.+++
T Consensus 3 HgHeVL~mml~~~~~~t~~~L~~~i 27 (77)
T TIGR03853 3 HGHEVLNLMLASGEPYTRESLKAAI 27 (77)
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 45566655554 3467777766554
No 49
>PRK14424 acylphosphatase; Provisional
Probab=39.24 E-value=56 Score=22.43 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=29.7
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| ++|.+.|-.+++..++..+-
T Consensus 29 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 29 EAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred HHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 46667777677777788 99999999999888877774
No 50
>PRK14451 acylphosphatase; Provisional
Probab=38.87 E-value=58 Score=22.05 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=31.2
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
..|...|++=.+....+| +++.+.|-.+++..++..+.
T Consensus 24 ~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 24 KLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred HHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 456677888888888888 99999998888888777775
No 51
>PRK14446 acylphosphatase; Provisional
Probab=38.52 E-value=70 Score=21.65 Aligned_cols=38 Identities=24% Similarity=0.209 Sum_probs=30.3
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
..|...|+.=.+....+| +++.+.|=.+.+..++..+-
T Consensus 23 ~~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~ 61 (88)
T PRK14446 23 ERAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLW 61 (88)
T ss_pred HHHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHh
Confidence 357777888888888899 99999998877777666664
No 52
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.45 E-value=1.7e+02 Score=24.14 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=73.8
Q ss_pred CceeEEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQ 82 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~-~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~~ 82 (232)
++-.+++. |.+.+...+... ..++.|+...+.+.+.+. ..+|+.|++.|--+.+|.-+...++
T Consensus 59 I~~lTvYa-FS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~---------------~~~~irv~viG~~~~Lp~~~~~~i~ 122 (253)
T PRK14836 59 IEMLTLFA-FSSENWLRPADEVSALMELFLKALDREVDKL---------------HRNGIRVRFIGDRSRLSPKLQERME 122 (253)
T ss_pred CCEEehhH-hhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH---------------HHCCCEEEEEeccccCCHHHHHHHH
Confidence 44444443 333444433322 566777777776654431 2468999999999999888888777
Q ss_pred HhhcCC-----------CC---hhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCC-hHHHHhhCCCCCHHHH
Q 026844 83 KIAQFK-----------VK---PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEELEVLPHLEAEDL 147 (232)
Q Consensus 83 ~l~~~~-----------~~---~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~-~~~~l~~l~~it~edl 147 (232)
.+...+ ++ .++...+..++.++.++...+ |-......+...|..+..+ +|=++..--..-+.+|
T Consensus 123 ~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~~~g~l~-~~~i~e~~i~~~L~~~~~pdpDLlIRTsGE~RLSnF 201 (253)
T PRK14836 123 YAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKLA-PDEIDEALLAQHLALADLPEPDLFIRTSGELRISNF 201 (253)
T ss_pred HHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCC-hHhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCC
Confidence 776432 11 233444444555555444333 4444444555555443322 3333333334444444
Q ss_pred HHHHHHHHhhHhhhheecc
Q 026844 148 AKFVPMMLSRTFLECYIAG 166 (232)
Q Consensus 148 ~~f~~~~~~~~~~~~lv~G 166 (232)
.= ++..+.+.++.-
T Consensus 202 Ll-----WQ~ayaElyF~~ 215 (253)
T PRK14836 202 LL-----WQLAYTELYFTD 215 (253)
T ss_pred hH-----HHHhheEEEeCC
Confidence 32 234455555555
No 53
>PRK14427 acylphosphatase; Provisional
Probab=37.04 E-value=74 Score=21.79 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=31.0
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~~ 83 (232)
.|...|++=.+....+| +++.+.|-.+++..|+..+-+.
T Consensus 28 ~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~~ 67 (94)
T PRK14427 28 KAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNSD 67 (94)
T ss_pred HHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhhC
Confidence 35666777777777888 9999999999988888777654
No 54
>PRK14448 acylphosphatase; Provisional
Probab=36.88 E-value=63 Score=21.91 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=29.5
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|++=.+....+| +++.+.|-.+++..+++.+-
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 24 EATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 45566777667777788 99999999999888888774
No 55
>PRK14428 acylphosphatase; Provisional
Probab=36.23 E-value=66 Score=22.27 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=30.5
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| +++.+.|-.+.+..|+..+-
T Consensus 30 ~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~ 67 (97)
T PRK14428 30 QARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLA 67 (97)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHh
Confidence 46667888778888888 99999999988888887775
No 56
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=36.17 E-value=76 Score=21.31 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=29.2
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~~ 83 (232)
.|...|+.=.+....+| +++.+.|-.+.+..|++.+-+.
T Consensus 26 ~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~g 65 (91)
T PF00708_consen 26 IARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKKG 65 (91)
T ss_dssp HHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHHS
T ss_pred HHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHhC
Confidence 45566777678888888 9999999888888887777653
No 57
>PRK14422 acylphosphatase; Provisional
Probab=36.09 E-value=73 Score=21.75 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=31.4
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~~ 83 (232)
.|...|+.=.+....+| +++.+.|-.+++..|+..+-+.
T Consensus 28 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~g 67 (93)
T PRK14422 28 RALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRGD 67 (93)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhC
Confidence 46667787777877888 9999999999988888777653
No 58
>PRK14438 acylphosphatase; Provisional
Probab=35.77 E-value=71 Score=21.68 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=29.6
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| +++.+.|-.+++..++..+-
T Consensus 25 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (91)
T PRK14438 25 TAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCH 62 (91)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 35666787777878888 89999999888888777774
No 59
>PRK14423 acylphosphatase; Provisional
Probab=35.09 E-value=75 Score=21.63 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=28.7
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| +++.+.|-.+++..++..+-
T Consensus 27 ~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 64 (92)
T PRK14423 27 TARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCH 64 (92)
T ss_pred HHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 45666777777777888 89999998888777766665
No 60
>PRK14447 acylphosphatase; Provisional
Probab=34.65 E-value=81 Score=21.60 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=30.2
Q ss_pred cccccccEEEEEeeCce--eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG--FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g--~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| +++.+.|-.+++..|+..+-
T Consensus 26 ~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 26 VANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred HHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 46667787777777888 99999999999988888664
No 61
>PRK14442 acylphosphatase; Provisional
Probab=34.03 E-value=77 Score=21.53 Aligned_cols=38 Identities=21% Similarity=0.130 Sum_probs=31.0
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
..|...|+.=.+....+| +++.+.|=.+++..++..+-
T Consensus 25 ~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14442 25 EEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLG 63 (91)
T ss_pred HHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 356777888888888889 99999998888877777664
No 62
>PF09568 RE_MjaI: MjaI restriction endonuclease; InterPro: IPR019068 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MjaI (recognises CTAG but cleavage site unknown) restriction endonuclease. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=33.87 E-value=57 Score=25.11 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=31.7
Q ss_pred HHHHhhhhcccChHHHHHHHHHHhccCCCCChHHHHhhCCCCCHHHHHHHHHHHH
Q 026844 101 VTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMML 155 (232)
Q Consensus 101 ~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~l~~it~edl~~f~~~~~ 155 (232)
-+++|+++..+.+-.....+...+ ..-..+..+++.++|.||+.+|++.+.
T Consensus 33 t~eeWe~wY~~~~~e~i~~a~~ki----~~~i~e~~~a~~~it~ed~~~wv~dLv 83 (170)
T PF09568_consen 33 TIEEWEEWYFEKYPEAIEEATDKI----YVMITEVKEALNKITEEDCINWVKDLV 83 (170)
T ss_pred CHHHHHHHHHhcChHHHHHHHHHH----HHHHHHHHHHHHhCCHHHHHHHHHHhe
Confidence 346666666554322222222221 123567789999999999999998875
No 63
>PRK14443 acylphosphatase; Provisional
Probab=33.46 E-value=78 Score=21.71 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=29.4
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~ 82 (232)
.|...|+.=.+....+| +++.+.|-.+.+..+++.+.+
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 26 VAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 46667787777776677 999999998888777777655
No 64
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=32.93 E-value=3.5e+02 Score=24.02 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=67.1
Q ss_pred eeCce-eEEEEeeccchHHHHHHHHHHHhhcCCC---ChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCCh
Q 026844 57 HTESG-FEVTVVGYNHKLRILLETIFQKIAQFKV---KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPW 132 (232)
Q Consensus 57 ~~~~g-~~l~v~G~s~kl~~ll~~i~~~l~~~~~---~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~ 132 (232)
.++.| +.+.+.+=..+....++.....++.-.. +-..=..+...+...+. .... ++..+......+.. ++
T Consensus 312 ysDsGL~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~-ss~~-a~~~~~~~~a~~~~----~~ 385 (429)
T KOG2583|consen 312 YSDSGLFGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYL-SSVE-ALELATGSQANLVS----EP 385 (429)
T ss_pred ccCCceEEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh-cchH-HHHHhhHHHhcCCC----Ch
Confidence 34556 4677788778788888888887777543 22222222222332232 2233 55555544433322 88
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhhHhhhheeccccH
Q 026844 133 MEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGSII 169 (232)
Q Consensus 133 ~~~l~~l~~it~edl~~f~~~~~~~~~~~~lv~Gni~ 169 (232)
++.+.++.+++-.|+.+..+.+++. .+..-.+||++
T Consensus 386 d~~i~~id~Vt~sdV~~a~kk~~s~-kls~aA~Gnl~ 421 (429)
T KOG2583|consen 386 DAFIQQIDKVTASDVQKAAKKFLSG-KLSLAAYGNLS 421 (429)
T ss_pred HHHHHHhccccHHHHHHHHHHhccC-cceeeeecccc
Confidence 9999999999999999999999843 35556678764
No 65
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=32.91 E-value=17 Score=24.18 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=39.7
Q ss_pred CceeEEEEeeccchHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhh
Q 026844 59 ESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYH 106 (232)
Q Consensus 59 ~~g~~l~v~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~ 106 (232)
++-+.=++.||.+++-.++..+-+.+...+.+++.|+.+.....|.+.
T Consensus 25 drel~G~L~afD~HlNmvL~d~eetit~~e~~E~~~e~~~k~~~r~~e 72 (91)
T KOG3460|consen 25 DRELRGTLHAFDEHLNMVLGDVEETITTVEIDEDTYEEIVKTTKRTVE 72 (91)
T ss_pred ChhhhcchhhhHHhhhhhhhhhhheEEEeeccchhHHHHHhhhhccee
Confidence 344666789999999999999999999999999999988777666543
No 66
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=32.70 E-value=1.1e+02 Score=22.78 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=32.9
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHh---------------hHhhhheeccccHHHHHHHh
Q 026844 134 EELEVLPHLEAEDLAKFVPMMLS---------------RTFLECYIAGSIIQYIEDVF 176 (232)
Q Consensus 134 ~~l~~l~~it~edl~~f~~~~~~---------------~~~~~~lv~Gni~~~i~~~l 176 (232)
..+++|+.++..++..-...++. ...++.+.+|.++...+..|
T Consensus 3 ~~la~L~~l~~~eL~~~W~~~fg~~pp~~~r~~L~~rlAyriQe~a~GgL~~~~~~rL 60 (136)
T PF11149_consen 3 AQLAALPDLPMPELRARWRRLFGSPPPHHNRDFLERRLAYRIQELAFGGLSEETRRRL 60 (136)
T ss_pred HHHhhcccCCHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 46789999999999887776663 34788899998876655555
No 67
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=32.54 E-value=58 Score=23.21 Aligned_cols=67 Identities=13% Similarity=0.244 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCChHHHHhhCCCC
Q 026844 72 KLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHL 142 (232)
Q Consensus 72 kl~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~l~~i 142 (232)
-+...-..++..+.+. +++.+.|+..|.+.+-.+--.. |-..+-. +...+..+.+|..+++..|..+
T Consensus 42 el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~---P~~~~~~-L~~~f~~~~~Sl~qR~~iL~~l 110 (114)
T PF10193_consen 42 ELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAA---PEKVAPY-LTEEFFSGDYSLQQRMSILSAL 110 (114)
T ss_dssp SHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHS---GGGHHH--HHHHHTTS---THHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHh---hHHHHHH-HHHHHhcCCCCHHHHHHHHHHH
Confidence 4455555566666555 4678899999988887765333 7555444 4466667889988887765443
No 68
>PRK14426 acylphosphatase; Provisional
Probab=32.52 E-value=83 Score=21.39 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=29.9
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~ 82 (232)
..|...|+.=.+....+| +++.+.|-.+++..|+..+-+
T Consensus 25 ~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 25 HEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred HHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 346667777667776676 999999999998888777654
No 69
>PRK14441 acylphosphatase; Provisional
Probab=31.83 E-value=99 Score=21.08 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=30.5
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
..|...|+.=.+....+| +++.+.|-.+.+..+++.+-
T Consensus 26 ~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 26 DEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred HHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 356777887778888888 99999998888887777763
No 70
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=31.55 E-value=94 Score=20.63 Aligned_cols=25 Identities=4% Similarity=0.029 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHhhC
Q 026844 115 QLAMYYCSLILQ-DQTWPWMEELEVL 139 (232)
Q Consensus 115 ~~a~~~~~~~l~-~~~~~~~~~l~~l 139 (232)
-++..++..++. ..+|+.+++.+++
T Consensus 4 iHgHeVL~mmi~~~~~~t~~~L~~ai 29 (78)
T PF10678_consen 4 IHGHEVLNMMIESGNPYTKEELKAAI 29 (78)
T ss_pred cHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 356667766654 3467777766554
No 71
>PRK14421 acylphosphatase; Provisional
Probab=31.47 E-value=82 Score=21.89 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=29.8
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| +++.+.|-.+++..|+..+.
T Consensus 26 ~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (99)
T PRK14421 26 TAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCR 63 (99)
T ss_pred HHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 45666777777778888 99999999989888877765
No 72
>PRK14452 acylphosphatase; Provisional
Probab=30.35 E-value=88 Score=22.08 Aligned_cols=37 Identities=24% Similarity=0.099 Sum_probs=29.4
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i 80 (232)
..|...|+.=.+....+| +++.+.|-.+.+..|.+.+
T Consensus 41 ~~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l 78 (107)
T PRK14452 41 RRALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWC 78 (107)
T ss_pred HHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHH
Confidence 356777888888888889 9999999998887774433
No 73
>PRK14450 acylphosphatase; Provisional
Probab=30.08 E-value=1e+02 Score=20.91 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=29.0
Q ss_pred cccccccEEEEEeeCce--eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG--FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g--~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| +++.+.|-.+.+..|+..+-
T Consensus 24 ~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~ 62 (91)
T PRK14450 24 QATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR 62 (91)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 45666776667777788 89999998888888877774
No 74
>PRK14433 acylphosphatase; Provisional
Probab=29.69 E-value=1e+02 Score=20.70 Aligned_cols=37 Identities=27% Similarity=0.229 Sum_probs=28.8
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|++=-+....+| +++.+.|=.+.+..+++.+.
T Consensus 23 ~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 60 (87)
T PRK14433 23 KARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLR 60 (87)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 35566776667777788 99999999988877777764
No 75
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.20 E-value=3.3e+02 Score=22.45 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=42.6
Q ss_pred CCCceeEEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHH
Q 026844 2 FSTPKAFVKIYFNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (232)
Q Consensus 2 F~~Pk~~i~~~i~~~~~~~s~~~-~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i 80 (232)
++++-++++. |.+.+...+... ..+.+|+...+.+.+.. ...+|+.|++.|=-+.||.-+...
T Consensus 65 ~GI~~vTvYa-FS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~---------------~~~~~iri~viG~~~~Lp~~~~~~ 128 (251)
T PRK14830 65 LGVKVLTLYA-FSTENWKRPKDEVKFLMNLPVEFLDKFVPE---------------LIENNVKVNVIGDTDRLPEHTLRA 128 (251)
T ss_pred cCCCEEEEEE-EehhhcCCCHHHHHHHHHHHHHHHHHHHHH---------------HHHcCCEEEEEcChhhCCHHHHHH
Confidence 4566666665 444444444333 45666666666554431 124688999999888888877777
Q ss_pred HHHhhc
Q 026844 81 FQKIAQ 86 (232)
Q Consensus 81 ~~~l~~ 86 (232)
++.+..
T Consensus 129 ~~~~e~ 134 (251)
T PRK14830 129 LEKAIE 134 (251)
T ss_pred HHHHHH
Confidence 666543
No 76
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=28.53 E-value=3.2e+02 Score=22.13 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=39.7
Q ss_pred EeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHHHHHhhcC
Q 026844 13 FNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQF 87 (232)
Q Consensus 13 i~~~~~~~s~~~-~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~~~l~~~ 87 (232)
|.+.+...++.. ..+++|+...+.+...+. ..+|+.|++.|=-+.+|.-+...++.+...
T Consensus 52 FStEN~~Rp~~EV~~Lm~L~~~~l~~~~~~~---------------~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~ 112 (226)
T TIGR00055 52 FSTENWKRPKEEVDFLMELFEKKLDREVKEL---------------HRYNVRIRIIGDLSLLSKELQEKIKKAEED 112 (226)
T ss_pred eehhhcCcCHHHHHHHHHHHHHHHHHHHHHH---------------HHCCCEEEEEeChhhCCHHHHHHHHHHHHH
Confidence 444444444333 567777777776554331 246889999999999988888877766553
No 77
>PRK14434 acylphosphatase; Provisional
Probab=26.71 E-value=1.3e+02 Score=20.41 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.2
Q ss_pred cccccc-cEEEEEeeCce-eEEEEeecc-chHHHHHHHHHH
Q 026844 45 YAQVAG-LDYGINHTESG-FEVTVVGYN-HKLRILLETIFQ 82 (232)
Q Consensus 45 ~A~~Ag-l~~~i~~~~~g-~~l~v~G~s-~kl~~ll~~i~~ 82 (232)
.|...| +.=.+....+| +++.+.|-. +++..|+..+.+
T Consensus 24 ~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 24 LALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred HHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 455667 77777877888 999999986 588877776654
No 78
>PRK14437 acylphosphatase; Provisional
Probab=26.47 E-value=1.2e+02 Score=21.52 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=30.2
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
..|...|+.=.+....+| +++.+.|=.+.+..|+..+-
T Consensus 44 ~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 44 KKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred HHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 346667888778888888 99999998888877777664
No 79
>PRK14432 acylphosphatase; Provisional
Probab=25.89 E-value=1.4e+02 Score=20.43 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=30.9
Q ss_pred cccccccEEEEEeeCce-eEEEEe-eccchHHHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVV-GYNHKLRILLETIFQK 83 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~-G~s~kl~~ll~~i~~~ 83 (232)
.|...|+.=.+....+| +++.+. |-.+++..++..+-+.
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~g 64 (93)
T PRK14432 24 IANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKNG 64 (93)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHhC
Confidence 46667787777777888 999998 9999998888766553
No 80
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.39 E-value=3.9e+02 Score=22.04 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=41.4
Q ss_pred EeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHHHHHhhcC
Q 026844 13 FNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQF 87 (232)
Q Consensus 13 i~~~~~~~s~~~-~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~~~l~~~ 87 (232)
|.+.+...++.. ..+++|+.+.+.+.+.+. ..+|+.|++.|=-+.||.-+...++.+...
T Consensus 75 FS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~---------------~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~ 135 (250)
T PRK14840 75 FSTENFSRSKEEVAELFSLFNSQLDSQLPYL---------------HENEIRLRCIGDLSKLPQELQNNIEQASSA 135 (250)
T ss_pred eehhhcCCCHHHHHHHHHHHHHHHHHHHHHH---------------HHCCCEEEEEeChhhCCHHHHHHHHHHHHH
Confidence 444455544444 467777777776654431 246999999999999999888888777654
No 81
>PF03220 Tombus_P19: Tombusvirus P19 core protein; InterPro: IPR004905 This family represents the Tombusvirus P19 core protein.; GO: 0019012 virion; PDB: 1RPU_A 1R9F_A.
Probab=25.26 E-value=2.1e+02 Score=21.18 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=25.8
Q ss_pred cccccEEEEEeeCceeEEEEeeccchHHHHHHHHHH
Q 026844 47 QVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQ 82 (232)
Q Consensus 47 ~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~~ 82 (232)
...|..|+|.+ +|+.++++|=+-.|..|++..+.
T Consensus 106 ~QigCTYsIRf--RG~~~TlSGGSrtLqrl~eMAiR 139 (170)
T PF03220_consen 106 NQIGCTYSIRF--RGVSVTLSGGSRTLQRLIEMAIR 139 (170)
T ss_dssp S--EEEEEEEE--TTEEEEEEEEGGGHHHHHHHHHH
T ss_pred cccceeEEEEE--eeeEEEecCChHHHHHHHHHHHH
Confidence 34567788876 89999999999999888876543
No 82
>PF10231 DUF2315: Uncharacterised conserved protein (DUF2315); InterPro: IPR018796 This entry consists of small conserved proteins found from worms to humans. Their function is not known.
Probab=24.95 E-value=1.6e+02 Score=21.45 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHhhHh
Q 026844 139 LPHLEAEDLAKFVPMMLSRTF 159 (232)
Q Consensus 139 l~~it~edl~~f~~~~~~~~~ 159 (232)
...++.+++..|++.|+...+
T Consensus 74 ~~~l~a~~mseFYk~FL~~n~ 94 (126)
T PF10231_consen 74 KQELSADEMSEFYKEFLDKNR 94 (126)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999997543
No 83
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=24.40 E-value=1.3e+02 Score=19.95 Aligned_cols=38 Identities=16% Similarity=0.030 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhccC--CCCChHHHHhhCCCCCHHHHHHH
Q 026844 113 PFQLAMYYCSLILQD--QTWPWMEELEVLPHLEAEDLAKF 150 (232)
Q Consensus 113 p~~~a~~~~~~~l~~--~~~~~~~~l~~l~~it~edl~~f 150 (232)
.+.++...+...... ..-+.+.+.+||..+...|+.+-
T Consensus 43 ~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i~r~Di~~~ 82 (84)
T cd08317 43 LAQQAQAMLKLWLEREGKKATGNSLEKALKKIGRDDIVEK 82 (84)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHcChHHHHHH
Confidence 457777766544443 35778899999999999998753
No 84
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=24.21 E-value=1.9e+02 Score=20.64 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCC----CChhhHHHHHHHHHHHhhhhcccChHHH
Q 026844 76 LLETIFQKIAQFK----VKPDRFSVIKEMVTKEYHNNKFLQPFQL 116 (232)
Q Consensus 76 ll~~i~~~l~~~~----~~~~~F~~~k~~~~~~~~n~~~~~p~~~ 116 (232)
+|+++-+.|..-. .+++.+..+|.-+.+.|+.+....|..+
T Consensus 41 ILKrF~~yL~~~~~~~~~e~~~~~~yr~aL~~AY~dF~~Stp~~e 85 (113)
T PRK00810 41 ILKRMGQYLAQEDFAGLPEAEARARCRAVLERAYADFVASSPLDQ 85 (113)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHccCCHhHH
Confidence 3455555554333 2356789999999999999998888554
No 85
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=24.05 E-value=2.9e+02 Score=21.68 Aligned_cols=36 Identities=8% Similarity=0.295 Sum_probs=28.1
Q ss_pred cEEEEEeeCceeEEEEeeccchHHHHHHHHHHHhhc
Q 026844 51 LDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQ 86 (232)
Q Consensus 51 l~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~~~l~~ 86 (232)
..+.+....+++.|.+.|+.+.+......|-+....
T Consensus 25 ~~~~v~~k~n~l~I~i~G~~~eike~~~~Ik~~~~~ 60 (190)
T PF09840_consen 25 IYIYVEVKGNSLKIEIQGYEKEIKEAIRRIKELVRR 60 (190)
T ss_pred cEEEEEEeCCEEEEEEecChHHHHHHHHHHHHHHHH
Confidence 345677778999999999999888888777665544
No 86
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=24.01 E-value=1.2e+02 Score=20.39 Aligned_cols=40 Identities=8% Similarity=-0.005 Sum_probs=29.6
Q ss_pred cChHHHHHHHHHHhccC--CCCChHHHHhhCCCCCHHHHHHH
Q 026844 111 LQPFQLAMYYCSLILQD--QTWPWMEELEVLPHLEAEDLAKF 150 (232)
Q Consensus 111 ~~p~~~a~~~~~~~l~~--~~~~~~~~l~~l~~it~edl~~f 150 (232)
.+|..|+...+...... ..-+.+.++.+|..+.+.|+...
T Consensus 41 ~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~i~R~DIv~~ 82 (84)
T cd08803 41 NSLIAQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTL 82 (84)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHCCcHHHHHh
Confidence 34677888877655544 35567789999999999998754
No 87
>KOG4107 consensus MP1 adaptor interacting protein P14 [Signal transduction mechanisms]
Probab=23.78 E-value=2.1e+02 Score=20.07 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=36.7
Q ss_pred hhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHHHHHh
Q 026844 39 LNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKI 84 (232)
Q Consensus 39 l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~~~l 84 (232)
|.+.+-+|..-|.+-++-.+..|.-+.-+||-||-..+-..+...+
T Consensus 7 LtqVLsQaNTgGV~~tlLln~EG~LLAYsGygdkdarvtaAiasni 52 (125)
T KOG4107|consen 7 LTQVLSQANTGGVDGTLLLNKEGLLLAYSGYGDKDARVTAAIASNI 52 (125)
T ss_pred HHHHHhhcccCCccceEEEcCCCcEEEecccCcchhHHHHHHHHHH
Confidence 4455667888889888888899999999999999777766666554
No 88
>PF11693 DUF2990: Protein of unknown function (DUF2990); InterPro: IPR021706 This family of proteins represents a fungal protein with unknown function.
Probab=22.94 E-value=81 Score=19.90 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.3
Q ss_pred EEeeccchHHHHHHHHHHHhhcC
Q 026844 65 TVVGYNHKLRILLETIFQKIAQF 87 (232)
Q Consensus 65 ~v~G~s~kl~~ll~~i~~~l~~~ 87 (232)
.+++|++.+.+++.+|-+.|-..
T Consensus 17 ~~Yd~S~dlaeFy~rVSk~I~~~ 39 (64)
T PF11693_consen 17 NVYDYSDDLAEFYGRVSKYIESA 39 (64)
T ss_pred ccccCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999998887553
No 89
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.89 E-value=4.4e+02 Score=21.78 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=38.7
Q ss_pred EeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHHHHHhhcC
Q 026844 13 FNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQF 87 (232)
Q Consensus 13 i~~~~~~~s~~~-~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~~~l~~~ 87 (232)
|.+.+...++.. ..+++|+...+.+.+.+ ...+|+.+++.|=-+.||.-+...++.+...
T Consensus 71 FS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~---------------~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~ 131 (253)
T PRK14832 71 FSTENWQRPIEEVDFLMLLFERLLRRELAQ---------------MHREGVRISFIGDLSALPKSLQTEMERSMTE 131 (253)
T ss_pred eehhhcCCCHHHHHHHHHHHHHHHHHHHHH---------------HHhcCCEEEEEeCchhCCHHHHHHHHHHHHH
Confidence 444444444333 55666766666654432 1356899999999999988888777766553
No 90
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.81 E-value=4.4e+02 Score=21.72 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=58.8
Q ss_pred CCceeEEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHHH
Q 026844 3 STPKAFVKIYFNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~-~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~ 81 (232)
+++-++++. |.+.+...++.. ..+++|+...+.+.+.. ...+|+.|++.|=-+.||.-+...+
T Consensus 58 gI~~lTvYa-FS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~---------------~~~~~iri~viGd~~~Lp~~l~~~i 121 (249)
T PRK14834 58 GIGYLTLFA-FSSENWSRPASEVSDLFGLLRLFIRRDLAE---------------LHRNGVRVRVIGERAGLEADICALL 121 (249)
T ss_pred CCCEEEEEE-EeccccCCCHHHHHHHHHHHHHHHHHHHHH---------------HHHCCcEEEEEcChhhCCHHHHHHH
Confidence 344445443 344444444333 56677777777654322 1246888999998888888887776
Q ss_pred HHhhcCCC--------------ChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccC
Q 026844 82 QKIAQFKV--------------KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD 127 (232)
Q Consensus 82 ~~l~~~~~--------------~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~ 127 (232)
..+...+- ..++...+..++.++..+...+ |-......+...|..
T Consensus 122 ~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~~~g~~~-~~dI~e~~i~~~L~~ 180 (249)
T PRK14834 122 NEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLD-PASIDAETISANLDT 180 (249)
T ss_pred HHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHHHcCCCC-hhhCCHHHHHHHhcc
Confidence 66554331 1234444444555554444333 444444444444443
No 91
>PRK14439 acylphosphatase; Provisional
Probab=22.69 E-value=1.4e+02 Score=22.80 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=30.4
Q ss_pred hcccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHH
Q 026844 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (232)
Q Consensus 44 y~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~ 82 (232)
..|...|+.=.+....+| +++.+.|=.+++..+++.+-+
T Consensus 96 ~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~ 135 (163)
T PRK14439 96 YEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKS 135 (163)
T ss_pred HHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 456667777777776777 999999999888888777764
No 92
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.62 E-value=4.2e+02 Score=21.48 Aligned_cols=133 Identities=9% Similarity=0.091 Sum_probs=68.1
Q ss_pred EeCCCCCCC-HHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHHHHHhhcCCC--
Q 026844 13 FNCPHASSS-PESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKV-- 89 (232)
Q Consensus 13 i~~~~~~~s-~~~~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~~~l~~~~~-- 89 (232)
|.+.+...+ .+-..+.+|+...+.+.+... ..+|+.|++.|=-+.+|.-+...++.+...+-
T Consensus 46 FS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~---------------~~~~i~vr~iG~~~~Lp~~l~~~i~~~e~~T~~~ 110 (229)
T PRK10240 46 FSSENWNRPAQEVSALMELFVWALDSEVKSL---------------HRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGN 110 (229)
T ss_pred eehhhcCcCHHHHHHHHHHHHHHHHHHHHHH---------------HHCCcEEEEEeChhhCCHHHHHHHHHHHHHhcCC
Confidence 344444433 333667777777766544321 24688999999888888887777766654321
Q ss_pred ---------C---hhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCC-hHHHHhhCCCCCHHHHHHHHHHHHh
Q 026844 90 ---------K---PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEELEVLPHLEAEDLAKFVPMMLS 156 (232)
Q Consensus 90 ---------~---~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~-~~~~l~~l~~it~edl~~f~~~~~~ 156 (232)
+ .++...+..++.+..++...+ |-......+...|..+..+ ++=++..=-..-+.+|.= ++
T Consensus 111 ~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~g~~~-~~~i~e~~i~~~L~t~~~pdpDLlIRTsGe~RLSnFLl-----WQ 184 (229)
T PRK10240 111 TGLTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQ-PDQIDEEMLNQHICMHELAPVDLVIRTGGEHRISNFLL-----WQ 184 (229)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHHHHHcCCCC-hhhCCHHHHHHHhccCCCCCCCEEEeCCCcccccCChH-----HH
Confidence 1 233333344555554444433 4444444554544433222 222223323333333332 23
Q ss_pred hHhhhheecc
Q 026844 157 RTFLECYIAG 166 (232)
Q Consensus 157 ~~~~~~lv~G 166 (232)
..+.+.++..
T Consensus 185 ~ayaElyF~~ 194 (229)
T PRK10240 185 IAYAELYFTD 194 (229)
T ss_pred HhheEEEECC
Confidence 4445555555
No 93
>smart00311 PWI PWI, domain in splicing factors.
Probab=21.72 E-value=2.3e+02 Score=18.21 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=25.0
Q ss_pred ChHHHHhhCCCCCHHHHHHHHHHHHhhH
Q 026844 131 PWMEELEVLPHLEAEDLAKFVPMMLSRT 158 (232)
Q Consensus 131 ~~~~~l~~l~~it~edl~~f~~~~~~~~ 158 (232)
+++++...|+...++|-..|+.++++..
T Consensus 41 ~~~~l~~~L~~~~f~da~~Fv~~Lw~~l 68 (74)
T smart00311 41 GPQAKLLQINLTGFEDAEEFVDKLWRLL 68 (74)
T ss_pred ChHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 8899999999999999999999998764
No 94
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=20.75 E-value=2.4e+02 Score=18.46 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhh
Q 026844 73 LRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYH 106 (232)
Q Consensus 73 l~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~ 106 (232)
+..+++.+.+.+....+++++|..+.+-+.+-=+
T Consensus 8 ~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~G~ 41 (74)
T PF04444_consen 8 MARLVRHLHDFIREVDLTEDEWWAAVDFLNRVGQ 41 (74)
T ss_dssp HHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 3455666666777778999999998877666544
No 95
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=20.61 E-value=3.3e+02 Score=19.54 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=29.9
Q ss_pred eEEEEeecc---chHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhhh
Q 026844 62 FEVTVVGYN---HKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 107 (232)
Q Consensus 62 ~~l~v~G~s---~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n 107 (232)
+.+.|+|-+ +++....+.|-..+.....+ ..+.+|.+.++++..
T Consensus 68 lhV~I~a~~~~~e~~~~A~~~I~~ll~~~~~~--~~~~~k~~ql~~la~ 114 (120)
T cd02395 68 LHVLITAETPPEEALAKAVEAIEELLKPAIEG--GNDELKREQLRELAL 114 (120)
T ss_pred cEEEEEeCCcHHHHHHHHHHHHHHHhccCCCc--cchHHHHHHHHHHHH
Confidence 788899988 67777777666666643333 456677777777653
Done!