Query 026844
Match_columns 232
No_of_seqs 149 out of 737
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 23:37:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cww_A Insulysin, insulin-degr 99.9 5.9E-24 2E-28 203.0 21.5 225 2-230 538-770 (990)
2 1q2l_A Protease III; hydrolase 99.9 1.5E-23 5E-28 199.3 20.3 219 2-230 519-744 (939)
3 3cx5_A Cytochrome B-C1 complex 99.6 4.4E-14 1.5E-18 122.5 17.7 170 4-176 20-197 (431)
4 3gwb_A Peptidase M16 inactive 99.5 2.2E-13 7.6E-18 118.2 17.0 164 4-169 33-206 (434)
5 3amj_B Zinc peptidase inactive 99.5 3.8E-13 1.3E-17 116.5 14.3 165 4-169 23-199 (424)
6 1pp9_B Ubiquinol-cytochrome C 99.5 2.6E-13 8.9E-18 118.0 11.6 163 4-167 42-211 (439)
7 3d3y_A Uncharacterized protein 99.5 2E-12 6.7E-17 111.7 17.0 162 4-169 22-210 (425)
8 1hr6_A Alpha-MPP, mitochondria 99.4 4.4E-12 1.5E-16 111.8 16.5 164 4-169 24-195 (475)
9 3hdi_A Processing protease; CA 99.3 9.9E-11 3.4E-15 101.3 15.1 169 4-173 21-197 (421)
10 3eoq_A Putative zinc protease; 99.2 4E-10 1.4E-14 97.1 16.5 171 4-176 21-204 (406)
11 3cx5_B Cytochrome B-C1 complex 99.2 1.4E-10 4.9E-15 97.9 10.8 163 3-169 9-177 (352)
12 2fge_A Atprep2;, zinc metallop 99.2 7.8E-11 2.7E-15 112.6 10.0 165 2-169 570-767 (995)
13 3ami_A Zinc peptidase; alpha/b 99.1 1.3E-09 4.4E-14 95.1 16.1 167 3-169 25-199 (445)
14 1pp9_A Ubiquinol-cytochrome C 99.1 6E-10 2.1E-14 97.2 10.0 165 4-169 32-204 (446)
15 1hr6_B Beta-MPP, mitochondrial 99.0 1.2E-09 4.2E-14 94.9 10.8 164 5-169 27-198 (443)
16 3go9_A Insulinase family prote 98.8 1.1E-08 3.9E-13 90.6 7.7 170 3-177 46-234 (492)
17 3ih6_A Putative zinc protease; 98.7 5.6E-07 1.9E-11 69.6 14.0 157 4-166 22-192 (197)
18 1q2l_A Protease III; hydrolase 98.5 3.5E-07 1.2E-11 86.8 11.0 165 4-169 40-217 (939)
19 3cww_A Insulysin, insulin-degr 98.4 1.9E-06 6.4E-11 82.3 10.7 174 3-177 53-247 (990)
20 3gwb_A Peptidase M16 inactive 98.2 1E-05 3.4E-10 69.7 10.9 160 5-167 248-420 (434)
21 1pp9_B Ubiquinol-cytochrome C 98.2 0.00011 3.8E-09 63.2 16.7 160 5-168 251-430 (439)
22 3amj_B Zinc peptidase inactive 98.1 2.4E-05 8.3E-10 67.2 12.2 161 5-168 241-414 (424)
23 3eoq_A Putative zinc protease; 98.1 3.1E-05 1E-09 66.4 12.1 159 5-167 234-403 (406)
24 3ami_A Zinc peptidase; alpha/b 98.1 4.4E-05 1.5E-09 66.2 13.2 161 6-167 244-421 (445)
25 3hdi_A Processing protease; CA 98.1 7.8E-05 2.7E-09 64.0 14.3 161 4-168 232-404 (421)
26 3cx5_A Cytochrome B-C1 complex 98.1 3.5E-05 1.2E-09 66.2 12.1 158 5-168 231-413 (431)
27 1hr6_B Beta-MPP, mitochondrial 98.0 0.00019 6.6E-09 61.9 15.2 162 4-168 244-428 (443)
28 1hr6_A Alpha-MPP, mitochondria 98.0 0.00018 6.2E-09 62.9 14.6 161 5-168 242-437 (475)
29 3d3y_A Uncharacterized protein 98.0 0.00022 7.4E-09 61.0 14.6 151 5-157 253-413 (425)
30 1pp9_A Ubiquinol-cytochrome C 97.9 0.00019 6.3E-09 62.2 13.5 106 62-168 320-428 (446)
31 3s5m_A Falcilysin; M16 metallo 97.7 0.00012 3.9E-09 71.3 9.4 164 9-177 113-323 (1193)
32 3go9_A Insulinase family prote 97.7 0.0012 4.2E-08 58.2 14.7 161 5-166 265-445 (492)
33 2fge_A Atprep2;, zinc metallop 97.5 0.00017 5.9E-09 68.8 8.0 153 23-176 71-256 (995)
34 3s5m_A Falcilysin; M16 metallo 96.9 0.0016 5.4E-08 63.4 6.9 161 5-168 738-937 (1193)
35 1vq8_E 50S ribosomal protein L 68.2 11 0.00037 28.2 5.6 52 20-71 55-113 (178)
36 1rl6_A Protein (ribosomal prot 58.4 26 0.0009 26.1 6.1 51 20-71 56-110 (177)
37 3j21_F 50S ribosomal protein L 52.2 28 0.00096 26.1 5.4 53 19-71 59-118 (184)
38 1nkw_E 50S ribosomal protein L 48.8 36 0.0012 26.1 5.6 53 20-73 84-140 (212)
39 1dd4_C 50S ribosomal protein L 48.0 13 0.00046 20.4 2.3 31 132-162 3-33 (40)
40 1zav_U 50S ribosomal protein L 45.3 9.4 0.00032 19.6 1.3 25 131-155 2-26 (30)
41 3v2d_H 50S ribosomal protein L 44.8 54 0.0018 24.4 5.9 52 19-71 56-111 (180)
42 3cx5_B Cytochrome B-C1 complex 43.8 35 0.0012 27.5 5.3 82 24-111 233-315 (352)
43 2fhm_A Probable acylphosphatas 36.1 45 0.0015 21.6 3.9 38 45-82 24-62 (91)
44 1ulr_A Putative acylphosphatas 34.7 46 0.0016 21.4 3.7 37 45-81 24-61 (88)
45 1r9f_A Core protein P19; prote 34.4 80 0.0027 21.5 4.8 32 48-81 85-116 (136)
46 2bjd_A Acylphosphatase; hypert 31.3 56 0.0019 21.7 3.8 37 45-81 36-73 (101)
47 2vh7_A Acylphosphatase-1; hydr 30.4 59 0.002 21.4 3.8 37 45-81 30-67 (99)
48 1rpu_A 19 kDa protein; RNAI, p 30.2 96 0.0033 21.9 4.8 33 47-81 106-138 (172)
49 1urr_A CG18505 protein; acylph 29.6 59 0.002 21.6 3.7 37 45-81 33-70 (102)
50 2zkr_e 60S ribosomal protein L 29.6 86 0.0029 23.6 4.9 53 20-72 62-123 (192)
51 1w2i_A Acylphosphatase; hydrol 28.7 49 0.0017 21.5 3.1 36 45-80 26-62 (91)
52 2gv1_A Probable acylphosphatas 24.9 48 0.0016 21.5 2.5 36 45-80 26-62 (92)
53 3trg_A Acylphosphatase; fatty 21.6 86 0.0029 20.6 3.3 36 45-80 34-70 (98)
No 1
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.92 E-value=5.9e-24 Score=203.03 Aligned_cols=225 Identities=36% Similarity=0.568 Sum_probs=190.5
Q ss_pred CCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHHH
Q 026844 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 2 F~~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~ 81 (232)
|++|++.+++.+.+|....++++.+++.|++.++.+.+++..|.+.++|++++++.+.+|+.++++|++++++.+++.+.
T Consensus 538 f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~ 617 (990)
T 3cww_A 538 FFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKII 617 (990)
T ss_dssp CCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEESTTHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhCCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHH
Confidence 78999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCChHHHHhhCCCCCHHHHHHHHHHHHhhHhhh
Q 026844 82 QKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLE 161 (232)
Q Consensus 82 ~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~l~~it~edl~~f~~~~~~~~~~~ 161 (232)
+.+.++.+++++|+.+|+++.++++|...+.|+.+|...+..++.++.|..++.+++|+++|.+|+.+|++.+++..+++
T Consensus 618 ~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~ 697 (990)
T 3cww_A 618 EKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIE 697 (990)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCHHHHHHHHTTCCHHHHHHHHHHHHHEEEEE
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheEE
Confidence 99999999999999999999999999988669999999999999988999989999999999999999999999999999
Q ss_pred heeccccHH--------HHHHHhccCCCCCCCCCCCCCcCccceEEeCCCCcEEEeecCCCCCCCCeeEEEEEEeCC
Q 026844 162 CYIAGSIIQ--------YIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQE 230 (232)
Q Consensus 162 ~lv~Gni~~--------~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~Ns~v~~y~Q~G~ 230 (232)
++|+||+.. .+.+.+..... +.+.++.+.+..+.+.++.|..+++.. .++++.|+++..|+|.|.
T Consensus 698 ~~v~Gn~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~ 770 (990)
T 3cww_A 698 ALLHGNITKQAALGIMQMVEDTLIEHAH--TKPLLPSQLAAYREVQLPDRGWFVYQQ--RNEVHNNSGIEIYYQTDM 770 (990)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHHC--CEECCGGGCCCCCBBCCCTTEEEEEEE--ECSSCSSEEEEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHhccCC--CCCCchhhccccceEEcCCCCeEEEEe--cCCCCCCcEEEEEEeCCC
Confidence 999998742 23344421111 112111112233445667776655543 345788999999999873
No 2
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.91 E-value=1.5e-23 Score=199.27 Aligned_cols=219 Identities=17% Similarity=0.278 Sum_probs=181.5
Q ss_pred CCCc-eeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHH
Q 026844 2 FSTP-KAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (232)
Q Consensus 2 F~~P-k~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i 80 (232)
|++| ++.|.+.+.+|....++++.+++.|+..++.+.+.+..|+|.+||++++++. .+|+.++++|++++++.+++.+
T Consensus 519 f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll 597 (939)
T 1q2l_A 519 FASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQAL 597 (939)
T ss_dssp CTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHH
T ss_pred cCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHH
Confidence 6776 9999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCChHHHHhhCCCCCHHHHHHHHHHHHhhHhh
Q 026844 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (232)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~l~~it~edl~~f~~~~~~~~~~ 160 (232)
.+.+.++.+++++|+++|++++++++|...+.|+.++...+..+++.+.|+..+.++.|+++|++|+.+|++++++..++
T Consensus 598 ~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~ 677 (939)
T 1q2l_A 598 LEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARP 677 (939)
T ss_dssp HHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheE
Confidence 99999999999999999999999999997767999999999999988889999999999999999999999999999999
Q ss_pred hheeccccHH-----HHHHHhccCCCCCCCCCCCCCcCccceEEeCCCCcEEEeecCCCCCCCCeeE-EEEEEeCC
Q 026844 161 ECYIAGSIIQ-----YIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCL-VHYIQVQE 230 (232)
Q Consensus 161 ~~lv~Gni~~-----~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~Ns~v-~~y~Q~G~ 230 (232)
+++|+||+.. .++..+..-.. .+. .....+...++.|..+.+... .+ +.++++ ..|||+|.
T Consensus 678 ~~~vvGn~~~~~~~~l~~~~~~~l~~---~~~---~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~ 744 (939)
T 1q2l_A 678 EFMVIGNMTEAQATTLARDVQKQLGA---DGS---EWCRNKDVVVDKKQSVIFEKA--GN-STDSALAAVFVPTGY 744 (939)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHTC---CCS---CCCCCEEECCCSCEEEEEEEC--CS-SSCEEEEEEEECSSC
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHcc---CCc---cccccceEEeCCCceEEEecC--CC-CCCceeEEEEEecCC
Confidence 9999998752 22222210000 010 111223334455555444443 22 446666 88899873
No 3
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.60 E-value=4.4e-14 Score=122.48 Aligned_cols=170 Identities=18% Similarity=0.140 Sum_probs=147.6
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHHHHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQK 83 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~~~ 83 (232)
.|++.+.+.+..+....++...+++.++..++...... |.++..|.+++...+.+++.+.++|.+++++.+++.+.+.
T Consensus 20 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--~~~~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~~~ 97 (431)
T 3cx5_A 20 AHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--AVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQS 97 (431)
T ss_dssp CSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--HHHHHTTCEEEEEECSSCEEEEEEECSTTHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--ccHHHcCCeeeeeecCCeEEEEEEechhhHHHHHHHHHHH
Confidence 48999999999998888888999999999999777543 6788899999999999999999999999999999999999
Q ss_pred hhcCC---CChhhHHHHHHHHHHHhhhhcccCh-HHHHHHHHHHhccCC---CCChHHHHhhCCCCCHHHHHHHHHHHHh
Q 026844 84 IAQFK---VKPDRFSVIKEMVTKEYHNNKFLQP-FQLAMYYCSLILQDQ---TWPWMEELEVLPHLEAEDLAKFVPMMLS 156 (232)
Q Consensus 84 l~~~~---~~~~~F~~~k~~~~~~~~n~~~~~p-~~~a~~~~~~~l~~~---~~~~~~~l~~l~~it~edl~~f~~~~~~ 156 (232)
+.++. +++++|++.|+.+.+++++...+ | ...+...+...+.++ .++..+..+.|+++|.+|+.+|+++++.
T Consensus 98 ~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~ 176 (431)
T 3cx5_A 98 FIQQKANLLSSSNFEATKKSVLKQVQDFEDN-DHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFL 176 (431)
T ss_dssp HHTCSTTTTCHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHTCCHHHHHHHHHHHSC
T ss_pred HhCcccccCCHHHHHHHHHHHHHHHHhhhcC-chhHHHHHHHHHHhcCCCCCCCCCCCCHHHHhhCCHHHHHHHHHhcCC
Confidence 99999 99999999999999999986555 9 999988888877653 2445566778889999999999999999
Q ss_pred hHhhhheeccccH-HHHHHHh
Q 026844 157 RTFLECYIAGSII-QYIEDVF 176 (232)
Q Consensus 157 ~~~~~~lv~Gni~-~~i~~~l 176 (232)
..++.+.|+||+. +.+.+.+
T Consensus 177 ~~~~~l~v~G~~~~~~~~~~~ 197 (431)
T 3cx5_A 177 NSNAVVVGTGNIKHEDLVNSI 197 (431)
T ss_dssp GGGEEEEEEESCCHHHHHHHH
T ss_pred CCcEEEEEEcCCCHHHHHHHH
Confidence 9999999999885 3344444
No 4
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.54 E-value=2.2e-13 Score=118.22 Aligned_cols=164 Identities=12% Similarity=0.102 Sum_probs=140.2
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhh---hcccc--cccEEEEEeeCceeEEEEeeccch--HHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYA---YYAQV--AGLDYGINHTESGFEVTVVGYNHK--LRIL 76 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~---y~A~~--Agl~~~i~~~~~g~~l~v~G~s~k--l~~l 76 (232)
.|++.+.+.+..+.... +...+++.++..++...+.... +...+ .|.+++...+..++.+.++|++++ ++.+
T Consensus 33 ~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t~~~~~~~~~~~~~~~~~l~~~ 111 (434)
T 3gwb_A 33 LPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPA 111 (434)
T ss_dssp SSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEECSSCEEEEEEEECSHHHHHHH
T ss_pred CCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeeecCCeEEEEEEecCccccHHHH
Confidence 59999999999998777 7788999999999977664322 22333 378888888889999999999999 9999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC---CCChHHHHhhCCCCCHHHHHHHHHH
Q 026844 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWMEELEVLPHLEAEDLAKFVPM 153 (232)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~---~~~~~~~l~~l~~it~edl~~f~~~ 153 (232)
++.+.+.+.++.+++++|++.|+.+.+++++.. ++|...+...+...+.++ .+......+.++++|.+|+.+|+++
T Consensus 112 l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~ 190 (434)
T 3gwb_A 112 LKLFAEVVGKPTFPADSLARIKNQMLAGFEYQK-QNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAFHAK 190 (434)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999999999984 459999999888877653 2334446789999999999999999
Q ss_pred HHhhHhhhheeccccH
Q 026844 154 MLSRTFLECYIAGSII 169 (232)
Q Consensus 154 ~~~~~~~~~lv~Gni~ 169 (232)
++...++.++|+||+.
T Consensus 191 ~y~~~~~~l~v~G~~~ 206 (434)
T 3gwb_A 191 AYAAGNVVIALVGDLS 206 (434)
T ss_dssp HSCGGGEEEEEEESCC
T ss_pred hcCcCCeEEEEEcCCC
Confidence 9999999999999874
No 5
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.49 E-value=3.8e-13 Score=116.53 Aligned_cols=165 Identities=12% Similarity=0.092 Sum_probs=137.5
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-------hhhhccccc--ccEEEEEeeCceeEEEEeeccchH-
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-------EYAYYAQVA--GLDYGINHTESGFEVTVVGYNHKL- 73 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~-------e~~y~A~~A--gl~~~i~~~~~g~~l~v~G~s~kl- 73 (232)
.|++.+.+.+..+....++...+++.++..++..... ...+.+.++ |.+++...+..+..+.++|.++++
T Consensus 23 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t~~~~t~~~~~~~~~~~~ 102 (424)
T 3amj_B 23 LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLGGGAEADRASFSLRVLSSPAE 102 (424)
T ss_dssp SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEEEEEECSSCEEEEEEEESSHHH
T ss_pred CCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEEEeecCCCeEEEEEEEeccccC
Confidence 5899999999999888888889999999999977433 223444444 678888888889999999999998
Q ss_pred -HHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC-CCChHHHHhhCCCCCHHHHHHHH
Q 026844 74 -RILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWPWMEELEVLPHLEAEDLAKFV 151 (232)
Q Consensus 74 -~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~~~~~l~~l~~it~edl~~f~ 151 (232)
+.+++.+.+.+.++.+++++|++.|+.+.+++++... .|...+...+...+.++ .|...-..+.|+++|.+|+.+|+
T Consensus 103 l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~-~p~~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l~~f~ 181 (424)
T 3amj_B 103 RNSALTILRDILAHPTFPAPVLERERARAIAGLREAQT-QPGSILGRRFTELAYGKHPYGHVSSVATLQKISRDQLVSFH 181 (424)
T ss_dssp HHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHTTSGGGCCCCHHHHHHCCHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999998755 49999998887777653 22211145667789999999999
Q ss_pred HHHHhhHhhhheeccccH
Q 026844 152 PMMLSRTFLECYIAGSII 169 (232)
Q Consensus 152 ~~~~~~~~~~~lv~Gni~ 169 (232)
++++...++.+.|+||+.
T Consensus 182 ~~~y~~~~~~l~v~Gd~~ 199 (424)
T 3amj_B 182 RTHYVARTAVVTLVGDIT 199 (424)
T ss_dssp HHHSCTTSCEEEEEESCC
T ss_pred HHhcCCCceEEEEEeCCC
Confidence 999999999999999875
No 6
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.47 E-value=2.6e-13 Score=117.96 Aligned_cols=163 Identities=7% Similarity=0.025 Sum_probs=142.3
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~-----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~ 78 (232)
.|++.+.+.+..+....++...+++.++..++..... ++....+..|.+++...+..++.+.++|++++++.+++
T Consensus 42 ~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ 121 (439)
T 1pp9_B 42 APASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILME 121 (439)
T ss_dssp CSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEecceEEEEEEEeehhhHHHHHH
Confidence 5899999999999888888889999999998866542 45555666788999998899999999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC--CCChHHHHhhCCCCCHHHHHHHHHHHHh
Q 026844 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ--TWPWMEELEVLPHLEAEDLAKFVPMMLS 156 (232)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~--~~~~~~~l~~l~~it~edl~~f~~~~~~ 156 (232)
.+.+.+.++.+++++|++.|+.+.+++++...+ |...+...+...+.+. .++.....+.|+++|.+|+.+|+++++.
T Consensus 122 ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~it~~~l~~f~~~~y~ 200 (439)
T 1pp9_B 122 FLLNVTTAPEFRRWEVAALQPQLRIDKAVALQN-PQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFT 200 (439)
T ss_dssp HHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHBSSGGGSCSSCCGGGTTTCCHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHhcCCCCCCccCCHHHHhhcCHHHHHHHHHHhCC
Confidence 999999999999999999999999999986554 9999988887777653 2445567789999999999999999999
Q ss_pred hHhhhheeccc
Q 026844 157 RTFLECYIAGS 167 (232)
Q Consensus 157 ~~~~~~lv~Gn 167 (232)
..++.++|+||
T Consensus 201 ~~~~~l~v~G~ 211 (439)
T 1pp9_B 201 SARMALIGLGV 211 (439)
T ss_dssp GGGEEEEEESS
T ss_pred CCceEEEEeCC
Confidence 99999999998
No 7
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.47 E-value=2e-12 Score=111.73 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=133.8
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh----hhccccc---ccEEEEEeeCce----eEEEEeeccc-
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEY----AYYAQVA---GLDYGINHTESG----FEVTVVGYNH- 71 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~----~y~A~~A---gl~~~i~~~~~g----~~l~v~G~s~- 71 (232)
.|++.+.+.+.++....+ ..++.++..++...+.+. .+...++ |.+++...+.++ +.+.++++++
T Consensus 22 ~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t~~~~~~~~~~~~~~ 98 (425)
T 3d3y_A 22 YKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDH 98 (425)
T ss_dssp CSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEEEECGG
T ss_pred cceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeecCceEEEEEEEEecChh
Confidence 489999999998875433 578999999998877554 3555555 777777665554 8999999998
Q ss_pred ------hHHHHHHHHHHHhhcCC-----CChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhcc-CC---CCChHHHH
Q 026844 72 ------KLRILLETIFQKIAQFK-----VKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQ---TWPWMEEL 136 (232)
Q Consensus 72 ------kl~~ll~~i~~~l~~~~-----~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~-~~---~~~~~~~l 136 (232)
+++.+++.+.+.+.++. +++++|++.|+.+.+++++...+ |...+...+...+. ++ .++.....
T Consensus 99 ~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 177 (425)
T 3d3y_A 99 YLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVED-KQTYASLALQSVYFNQSEDQKIPSFGTV 177 (425)
T ss_dssp GCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHTTTCTTTTSCTTCCH
T ss_pred hccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHhccCCCCccCCCCCCH
Confidence 69999999999999999 99999999999999999986555 99999998888877 42 23344566
Q ss_pred hhCCCCCHHHHHHHHHHHHhhHhhhheeccccH
Q 026844 137 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGSII 169 (232)
Q Consensus 137 ~~l~~it~edl~~f~~~~~~~~~~~~lv~Gni~ 169 (232)
+.|+.+|.+|+.+|+++++...++.+.|+||+.
T Consensus 178 ~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 210 (425)
T 3d3y_A 178 AALAEETAASLAAYYQKMLAEDQVDIFVLGDVN 210 (425)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 777889999999999999999999999999875
No 8
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.43 E-value=4.4e-12 Score=111.82 Aligned_cols=164 Identities=11% Similarity=0.089 Sum_probs=143.5
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l-----~e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~ 78 (232)
.|++.+.+.+..+....++...+++.++..|+.... .++....+..|.+++...+.+++.+.+++++++++.+++
T Consensus 24 ~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ 103 (475)
T 1hr6_A 24 GHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQ 103 (475)
T ss_dssp CSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHH
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEccCeEEEEEEecHHHHHHHHH
Confidence 488999999999988888889999999999887654 356666677799999998889999999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC---CCChHHHHhhCCCCCHHHHHHHHHHHH
Q 026844 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWMEELEVLPHLEAEDLAKFVPMML 155 (232)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~---~~~~~~~l~~l~~it~edl~~f~~~~~ 155 (232)
.+.+.+.++.+++++|++.|+.+++++++... .|...+...+...+.++ .++.....+.|+++|.+|+.+|+++++
T Consensus 104 ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y 182 (475)
T 1hr6_A 104 LMSETVRFPKITEQELQEQKLSAEYEIDEVWM-KPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFY 182 (475)
T ss_dssp HHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCHHHHHHHHHHhC
Confidence 99999999999999999999999999998554 49999999988888764 234445668889999999999999999
Q ss_pred hhHhhhheeccccH
Q 026844 156 SRTFLECYIAGSII 169 (232)
Q Consensus 156 ~~~~~~~lv~Gni~ 169 (232)
...++.+.|+| +.
T Consensus 183 ~p~n~~l~v~G-~d 195 (475)
T 1hr6_A 183 TPENTVAAFVG-VP 195 (475)
T ss_dssp CGGGEEEEEES-SC
T ss_pred CcccEEEEEeC-CC
Confidence 99999999999 74
No 9
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.27 E-value=9.9e-11 Score=101.29 Aligned_cols=169 Identities=10% Similarity=0.107 Sum_probs=140.4
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccccEEEEEeeCceeEEEEeeccchHHHHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e-----~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~ 78 (232)
.|.+.+.+.+..+....++...+++.++..++...... +.-..+..|.+++...+.....+.+++.+++++..++
T Consensus 21 ~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ 100 (421)
T 3hdi_A 21 VRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAID 100 (421)
T ss_dssp CSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeeccceEEEEEEecHHHHHHHHH
Confidence 58899999999998888888899999999988665532 2223344577888888888899999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC---CCChHHHHhhCCCCCHHHHHHHHHHHH
Q 026844 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWMEELEVLPHLEAEDLAKFVPMML 155 (232)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~---~~~~~~~l~~l~~it~edl~~f~~~~~ 155 (232)
.+.+.+.++.+++++|++.|+.+..+++....+ |...+...+...+.++ .++.-...+.++++|.+|+.+|+++++
T Consensus 101 ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~it~~~l~~f~~~~y 179 (421)
T 3hdi_A 101 TLSDMFFHSTFQKEELEKERKVVFEEIKMVDDT-PDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFY 179 (421)
T ss_dssp HHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCCHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHHhc
Confidence 999999999999999999999999999986555 9999999888877754 223334556777899999999999999
Q ss_pred hhHhhhheeccccHHHHH
Q 026844 156 SRTFLECYIAGSIIQYIE 173 (232)
Q Consensus 156 ~~~~~~~lv~Gni~~~i~ 173 (232)
...++.+.|+||+.+.+.
T Consensus 180 ~p~n~~l~v~Gd~~~~~~ 197 (421)
T 3hdi_A 180 TGDYVVISVAGNVHDELI 197 (421)
T ss_dssp STTTEEEEEEESCCHHHH
T ss_pred CcccEEEEEEeCCCHHHH
Confidence 999999999998763333
No 10
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.22 E-value=4e-10 Score=97.14 Aligned_cols=171 Identities=10% Similarity=0.033 Sum_probs=142.0
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEEeeCceeEEEEeeccchHHHHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~-----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~ 78 (232)
.|.+.+.+.+..+....++...+++.++..++-.... ++....+..|.+++...+.....+.+++.+++++..++
T Consensus 21 ~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ 100 (406)
T 3eoq_A 21 ARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLG 100 (406)
T ss_dssp CSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECSSCEEEEEEECGGGHHHHHH
T ss_pred CCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecCCeEEEEEEecHHHHHHHHH
Confidence 5889999999999888888899999999999976553 23333344588888888888999999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC---CCChHHHHhhCCCCCHHHHHHHHHHHH
Q 026844 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWMEELEVLPHLEAEDLAKFVPMML 155 (232)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~---~~~~~~~l~~l~~it~edl~~f~~~~~ 155 (232)
.+.+.+ ++.+++++|++.|..+..+++....+ |...+...+...+.++ .+..-...+.++.+|.+|+.+|+++++
T Consensus 101 ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t~~~l~~f~~~~y 178 (406)
T 3eoq_A 101 LFAKLL-RPALREEDFQTEKLVILEEIARYQDR-PGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRY 178 (406)
T ss_dssp HHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHHhC
Confidence 999999 99999999999999999999987555 9999999888877754 233334556777889999999999999
Q ss_pred hhHhhhheeccccH-----HHHHHHh
Q 026844 156 SRTFLECYIAGSII-----QYIEDVF 176 (232)
Q Consensus 156 ~~~~~~~lv~Gni~-----~~i~~~l 176 (232)
...++.+.|+||+. +.+++.+
T Consensus 179 ~p~n~~l~v~Gd~~~~~~~~~i~~~f 204 (406)
T 3eoq_A 179 LPKNMVLAATGRVDFDRLLAEAERLT 204 (406)
T ss_dssp CGGGEEEEEEESCCHHHHHHHHHHHH
T ss_pred CccCEEEEEEcCCCHHHHHHHHHHHh
Confidence 99999999999874 3455555
No 11
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.17 E-value=1.4e-10 Score=97.94 Aligned_cols=163 Identities=9% Similarity=0.093 Sum_probs=133.3
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEEeeCceeEEEEeeccchHHHHH
Q 026844 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (232)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~-----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll 77 (232)
..|.+.+.+.+..+.... ...+++.++..++..... ++....+..|.+++...+..+..+.+++.+++++.++
T Consensus 9 ~~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l 86 (352)
T 3cx5_B 9 PTKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYV 86 (352)
T ss_dssp SCSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHH
T ss_pred CCceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHH
Confidence 358888999998876653 256788888888865543 3444455668889988888899999999999999999
Q ss_pred HHHHHHhhcCCCChhhHH-HHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCChHHHHhhCCCCCHHHHHHHHHHHHh
Q 026844 78 ETIFQKIAQFKVKPDRFS-VIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLS 156 (232)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~-~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~l~~it~edl~~f~~~~~~ 156 (232)
+.+.+.+.++.++++.|+ +.|+.+..++++...+ |...+...+...+..+.+...-..+.++++|.+|+.+|+++++.
T Consensus 87 ~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l~~f~~~~y~ 165 (352)
T 3cx5_B 87 NALADVLYKTAFKPHELTESVLPAARYDYAVAEQC-PVKSAEDQLYAITFRKGLGNPLLYDGVERVSLQDIKDFADKVYT 165 (352)
T ss_dssp HHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTTTSCSSCCSSSCCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCCCccchhhhccCCHHHHHHHHHHhCC
Confidence 999999999999999998 9999999999975544 99999888777766443332223689999999999999999999
Q ss_pred hHhhhheeccccH
Q 026844 157 RTFLECYIAGSII 169 (232)
Q Consensus 157 ~~~~~~lv~Gni~ 169 (232)
+.++.+.++| +.
T Consensus 166 ~~n~~l~v~G-~~ 177 (352)
T 3cx5_B 166 KENLEVSGEN-VV 177 (352)
T ss_dssp GGGEEEEEES-SC
T ss_pred cCcEEEEEeC-CC
Confidence 9999999999 74
No 12
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.16 E-value=7.8e-11 Score=112.63 Aligned_cols=165 Identities=13% Similarity=0.121 Sum_probs=132.7
Q ss_pred CCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhhc-------ccccccEE-EE--EeeC-----ceeEEE
Q 026844 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-YLNEYAYY-------AQVAGLDY-GI--NHTE-----SGFEVT 65 (232)
Q Consensus 2 F~~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~-~l~e~~y~-------A~~Agl~~-~i--~~~~-----~g~~l~ 65 (232)
|..|.+++.+.+..+.. ++....++.+++.++.+ .+....|. +..+|+++ ++ +... .++.++
T Consensus 570 ~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~ 647 (995)
T 2fge_A 570 FTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVR 647 (995)
T ss_dssp CCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeeccccccCccccccceEEEE
Confidence 56788888888887544 66778899999999987 66554443 25557777 44 4444 689999
Q ss_pred EeeccchHHHHHHHHHHHhhcCCCChh-hHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCC------------h
Q 026844 66 VVGYNHKLRILLETIFQKIAQFKVKPD-RFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP------------W 132 (232)
Q Consensus 66 v~G~s~kl~~ll~~i~~~l~~~~~~~~-~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~------------~ 132 (232)
++|++++++.+++.+.+.+.++.++++ +|+.+|++++.++++...+.|+..|...+..++.+..+- .
T Consensus 648 ~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~ 727 (995)
T 2fge_A 648 GKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFL 727 (995)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHH
T ss_pred EEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHH
Confidence 999999999999999999999999998 999999999999999987778998888887765433221 1
Q ss_pred HHHH----hhCCCCCHHHHHHHHHHHHhhHhhhheeccccH
Q 026844 133 MEEL----EVLPHLEAEDLAKFVPMMLSRTFLECYIAGSII 169 (232)
Q Consensus 133 ~~~l----~~l~~it~edl~~f~~~~~~~~~~~~lv~Gni~ 169 (232)
.++. +.++.+ .+++.+|++++++..+++++|+||+.
T Consensus 728 ~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~ 767 (995)
T 2fge_A 728 HTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGK 767 (995)
T ss_dssp HHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHH
T ss_pred HHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHH
Confidence 2222 557788 99999999999999999999999876
No 13
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.15 E-value=1.3e-09 Score=95.06 Aligned_cols=167 Identities=9% Similarity=0.066 Sum_probs=134.5
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEEeeCceeEEEEeeccchHHHHH
Q 026844 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (232)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~-----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll 77 (232)
..|++.+.+.+..+....+....+++.++..++-.... ++.-..+..|.+++...+.....+.+++.+++++..+
T Consensus 25 ~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t~~d~t~y~~~~~~~~l~~~l 104 (445)
T 3ami_A 25 RAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVM 104 (445)
T ss_dssp TSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHH
T ss_pred CCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccccCCCeEEEEEECCHHHHHHHH
Confidence 46889999999988877777778899888888865542 2222233346678888777788888889999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC-C--CChHHHHhhCCCCCHHHHHHHHHHH
Q 026844 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-T--WPWMEELEVLPHLEAEDLAKFVPMM 154 (232)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~--~~~~~~l~~l~~it~edl~~f~~~~ 154 (232)
+.+.+.+.++.++++.|++.|..+..+++....+.|...+...+...+.++ . +.+-...+.|+++|.+|+.+|++++
T Consensus 105 ~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~it~~~l~~f~~~~ 184 (445)
T 3ami_A 105 GLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRW 184 (445)
T ss_dssp HHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhhCCHHHHHHHHHHh
Confidence 999999999999999999999999999994444459988888887777753 2 2233445677788999999999999
Q ss_pred HhhHhhhheeccccH
Q 026844 155 LSRTFLECYIAGSII 169 (232)
Q Consensus 155 ~~~~~~~~lv~Gni~ 169 (232)
+...++.+.|+||+.
T Consensus 185 y~p~n~~l~vvGd~d 199 (445)
T 3ami_A 185 YGPNNATVVVVGDVE 199 (445)
T ss_dssp CSGGGEEEEEEESCC
T ss_pred CCccceEEEEEcCCC
Confidence 999999999999874
No 14
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.06 E-value=6e-10 Score=97.18 Aligned_cols=165 Identities=10% Similarity=0.104 Sum_probs=133.4
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccccEEEEEeeCceeEEEEeeccchHHHHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e-----~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~ 78 (232)
.|.+.+.+.+..+....++....++.++..++...... +.-..+..|.+++...+..+..+.+++.+++++..++
T Consensus 32 ~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ 111 (446)
T 1pp9_A 32 QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVE 111 (446)
T ss_dssp CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEcCCeEEEEEEecHHHHHHHHH
Confidence 37888899999888777777888999998888655432 2222233477888888888899999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC-CC--ChHHHHhhCCCCCHHHHHHHHHHHH
Q 026844 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TW--PWMEELEVLPHLEAEDLAKFVPMML 155 (232)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~--~~~~~l~~l~~it~edl~~f~~~~~ 155 (232)
.+.+.+.++.++++.|++.|+.+..+++....+ |...+...+...+.++ .| ..-...+.|++++.+|+.+|+++++
T Consensus 112 ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~f~~~~y 190 (446)
T 1pp9_A 112 LLADIVQNCSLEDSQIEKERDVILQELQENDTS-MRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHY 190 (446)
T ss_dssp HHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHhcc
Confidence 999999999999999999999999999976555 9888888887777653 22 2233455667789999999999999
Q ss_pred hhHhhhheeccccH
Q 026844 156 SRTFLECYIAGSII 169 (232)
Q Consensus 156 ~~~~~~~lv~Gni~ 169 (232)
...++.+.|+||+.
T Consensus 191 ~p~n~~l~v~Gd~~ 204 (446)
T 1pp9_A 191 KAPRMVLAAAGGLE 204 (446)
T ss_dssp CGGGEEEEEEESCC
T ss_pred CCCCEEEEEEcCCC
Confidence 99999999999764
No 15
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.03 E-value=1.2e-09 Score=94.92 Aligned_cols=164 Identities=7% Similarity=0.063 Sum_probs=131.3
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccccEEEEEeeCceeEEEEeeccchHHHHHHH
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e-----~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~ 79 (232)
|.+.+.+.+..+....+.....++.++..++...... +.-..+..|.+++...+.....+.+++.+++++..++.
T Consensus 27 ~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~l 106 (443)
T 1hr6_B 27 SSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDI 106 (443)
T ss_dssp SEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEECSSEEEEEEEEEGGGHHHHHHH
T ss_pred CEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEEECCCeEEEEEEecHHHHHHHHHH
Confidence 4788889999887777777788888888887554322 22222223677888877888999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC-CC--ChHHHHhhCCCCCHHHHHHHHHHHHh
Q 026844 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TW--PWMEELEVLPHLEAEDLAKFVPMMLS 156 (232)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~--~~~~~l~~l~~it~edl~~f~~~~~~ 156 (232)
+.+.+.++.++++.|++.|+.+..+++....+ |...+...+...+..+ .+ ......+.|+++|.+++.+|+++++.
T Consensus 107 l~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~l~~f~~~~y~ 185 (443)
T 1hr6_B 107 LSDILTKSVLDNSAIERERDVIIRESEEVDKM-YDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYK 185 (443)
T ss_dssp HHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHhcCc
Confidence 99999999999999999999999999986555 9998888887777653 22 22234556677899999999999999
Q ss_pred hHhhhheeccccH
Q 026844 157 RTFLECYIAGSII 169 (232)
Q Consensus 157 ~~~~~~lv~Gni~ 169 (232)
..++.+.|+||+.
T Consensus 186 ~~n~~l~v~Gd~~ 198 (443)
T 1hr6_B 186 GDRMVLAGAGAVD 198 (443)
T ss_dssp GGGEEEEEEESCC
T ss_pred CCCEEEEEEcCCC
Confidence 9999999999774
No 16
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=98.77 E-value=1.1e-08 Score=90.62 Aligned_cols=170 Identities=11% Similarity=0.020 Sum_probs=124.4
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhc---------ccccccEEEEEeeCceeEEEEeecc---
Q 026844 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYY---------AQVAGLDYGINHTESGFEVTVVGYN--- 70 (232)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~---------A~~Agl~~~i~~~~~g~~l~v~G~s--- 70 (232)
..|++.+.+.+..+....++...+++.++..|+.......... ....|-+++.+.+.+...+.++..+
T Consensus 46 ~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~ 125 (492)
T 3go9_A 46 PSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRP 125 (492)
T ss_dssp TTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSCCCSEEECSSCEEEEEEECTTCH
T ss_pred CCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCcceEeCCCeEEEEEECCCCcH
Confidence 3578999999999988888999999999999998776432111 1123455566666677888888888
Q ss_pred chHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC--CCChHHHHhhCCCCCHHHHH
Q 026844 71 HKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ--TWPWMEELEVLPHLEAEDLA 148 (232)
Q Consensus 71 ~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~--~~~~~~~l~~l~~it~edl~ 148 (232)
++++..++.+.+.+.++.++++.|++.|....++++....+ |...+... .+.... ...+. .+.++++|.+|+.
T Consensus 126 ~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~--~~~i~~it~~dL~ 200 (492)
T 3go9_A 126 DLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQN-IQEPWWRY--RLKGSSLIGHDPG--QPVTQPVDVEKLK 200 (492)
T ss_dssp HHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSC-TTCHHHHH--HTTTSTTTTCCTT--CCCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccc-hhhHHHHH--HhccCCcccCCCc--hhhhhcCCHHHHH
Confidence 78999999999999999999999999888666566544333 54433321 111111 11111 2578999999999
Q ss_pred HHHHHHHhhHhhhheeccccH-----HHHHHHhc
Q 026844 149 KFVPMMLSRTFLECYIAGSII-----QYIEDVFF 177 (232)
Q Consensus 149 ~f~~~~~~~~~~~~lv~Gni~-----~~i~~~l~ 177 (232)
+|+++++...++.+.|+||+. +.+++.+.
T Consensus 201 ~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~ 234 (492)
T 3go9_A 201 QFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFS 234 (492)
T ss_dssp HHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhh
Confidence 999999999999999999874 34555553
No 17
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.68 E-value=5.6e-07 Score=69.58 Aligned_cols=157 Identities=12% Similarity=0.058 Sum_probs=107.7
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh----hhhhhhcccccccEEEEEee-----Cce-eEEEEeeccc-h
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY----LNEYAYYAQVAGLDYGINHT-----ESG-FEVTVVGYNH-K 72 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~----l~e~~y~A~~Agl~~~i~~~-----~~g-~~l~v~G~s~-k 72 (232)
.|.+.+.+.+..|... + .......++..+|... |.+.+.. . |+.|++++. ..| +.+.+.+-.+ +
T Consensus 22 ~~~~~v~~~~~~~~~~-~-~d~~al~vl~~iLggg~sSrL~~~lre--~-gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~ 96 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAG-S-PDFVGLDLAATILADTPSSRLYHALVP--T-KLASGVFGFTMDQLDPGLAMFGAQLQPGMD 96 (197)
T ss_dssp CCSCEEEEEEECCCTT-S-TTHHHHHHHHHHHHSSTTSHHHHHHTT--T-TSCSEEEEEEETTSSSCEEEEEEECCTTSC
T ss_pred CCCceEEEEEecCCCC-C-CcHHHHHHHHHHHcCCCCchHHHHHHh--c-CceEEEEeccccccCCeEEEEEEEECCCCC
Confidence 4567777777777543 3 3556667777777753 3333332 1 443333321 223 4555555555 4
Q ss_pred HHHHHHHHHHHhhcC---CCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCChHHHHhhCCCCCHHHHHH
Q 026844 73 LRILLETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAK 149 (232)
Q Consensus 73 l~~ll~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~l~~it~edl~~ 149 (232)
...+++.+.+.+... .+++++|+++|.+++.++...... |...+..+....+....-...+.++.++++|.+|+++
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~-~~~~a~~l~~~~~~g~~~~~~~~~~~i~~vT~~dv~~ 175 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYAD-PEKVGVALSEAIASGDWRLFFLQRDRVREAKLDDVQR 175 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCHHHHHH
Confidence 888888777777654 589999999999999999866554 8888888877776632334678899999999999999
Q ss_pred HHHHHHhhHhhhheecc
Q 026844 150 FVPMMLSRTFLECYIAG 166 (232)
Q Consensus 150 f~~~~~~~~~~~~lv~G 166 (232)
+.++++...+...++.|
T Consensus 176 ~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 176 AAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHSSGGGCEEEEEC
T ss_pred HHHHhCCccCeEEEEEe
Confidence 99999977666555555
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=98.54 E-value=3.5e-07 Score=86.80 Aligned_cols=165 Identities=12% Similarity=0.006 Sum_probs=134.7
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh------hhhhcccccccEEEEEeeCceeEEEEeeccchHHHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN------EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~------e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll 77 (232)
.|++.+.+.+..+.........+++.++.-|+-.+.. ++.-..+..|.+++.+.+.......+..-++.+...+
T Consensus 40 ~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~L 119 (939)
T 1q2l_A 40 AVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAV 119 (939)
T ss_dssp CSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEECGGGHHHHH
T ss_pred CCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECCCcEEEEEEeCHHHHHHHH
Confidence 5889999999998888888888999999988865543 2222234457788888888888888888999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCC-C--CChHHHHhhCCC----CCHHHHHHH
Q 026844 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-T--WPWMEELEVLPH----LEAEDLAKF 150 (232)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~--~~~~~~l~~l~~----it~edl~~f 150 (232)
..+.+.+.++.++++.|++-|..+..+++....+ |...+...+..++.++ . +..-...+.|+. +|.+++.+|
T Consensus 120 ~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~l~~f 198 (939)
T 1q2l_A 120 DRLADAIAEPLLDKKYAERERNAVNAELTMARTR-DGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDF 198 (939)
T ss_dssp HHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBTTBCHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHhcCCCCCCccCCCCCHHHHhcCCCchHHHHHHHH
Confidence 9999999999999999999999999999986555 8788888887777653 1 223344566666 999999999
Q ss_pred HHHHHhhHhhhheeccccH
Q 026844 151 VPMMLSRTFLECYIAGSII 169 (232)
Q Consensus 151 ~~~~~~~~~~~~lv~Gni~ 169 (232)
+++++...++.+.|.|++.
T Consensus 199 ~~~~Y~p~n~~l~v~G~~~ 217 (939)
T 1q2l_A 199 HEKYYSANLMKAVIYSNKP 217 (939)
T ss_dssp HHHHCCTTTCEEEEEESSC
T ss_pred HHhccCHhheEEEEEcCCC
Confidence 9999999999999999874
No 19
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=98.35 E-value=1.9e-06 Score=82.29 Aligned_cols=174 Identities=11% Similarity=0.005 Sum_probs=133.3
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhcccccccEEEEEeeCceeEEEEeeccchHHHH
Q 026844 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE------YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRIL 76 (232)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e------~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl~~l 76 (232)
..|++.+.+.+..+.........+++-++.-|+-.+... +.-..+..|...+...+.......+..-++.+...
T Consensus 53 ~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~ 132 (990)
T 3cww_A 53 TTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGA 132 (990)
T ss_dssp TCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEEEGGGHHHH
T ss_pred CCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEECCCceEEEEEeCHHHHHHH
Confidence 358999999999988877888899999998888655432 22222335667777766777778888899999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCC---CChHHHHhhCCCC-------CHHH
Q 026844 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT---WPWMEELEVLPHL-------EAED 146 (232)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~---~~~~~~l~~l~~i-------t~ed 146 (232)
+..+.+.+.++.++++.|++-|..+..+++....+ |...+...+..++.++. +..-...+.|..+ |.++
T Consensus 133 l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~-~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~ 211 (990)
T 3cww_A 133 LDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMN-DAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQE 211 (990)
T ss_dssp HHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHH
T ss_pred HHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhccccccchHHHH
Confidence 99999999999999999999999999999876555 76777777777776531 2223334455555 9999
Q ss_pred HHHHHHHHHhhHhhhheeccccH-----HHHHHHhc
Q 026844 147 LAKFVPMMLSRTFLECYIAGSII-----QYIEDVFF 177 (232)
Q Consensus 147 l~~f~~~~~~~~~~~~lv~Gni~-----~~i~~~l~ 177 (232)
+.+|+++++...++.+.|+|++. +.+++.+.
T Consensus 212 l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~ 247 (990)
T 3cww_A 212 LLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFS 247 (990)
T ss_dssp HHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhc
Confidence 99999999999999999999764 34555553
No 20
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=98.19 E-value=1e-05 Score=69.73 Aligned_cols=160 Identities=9% Similarity=0.028 Sum_probs=105.3
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhhhcccc--cccEEEEEee-----C-ceeEEEEeeccchHHH
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-LNEYAYYAQV--AGLDYGINHT-----E-SGFEVTVVGYNHKLRI 75 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~-l~e~~y~A~~--Agl~~~i~~~-----~-~g~~l~v~G~s~kl~~ 75 (232)
+.+.+.+.+..+... + .......++..+|... ++..++.... .|+.|++++. + ..+.+.+..=.++...
T Consensus 248 ~~~~v~~~~~~~~~~-~-~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 325 (434)
T 3gwb_A 248 SQTSLMLAQLGIDRD-D-PDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEG 325 (434)
T ss_dssp SEEEEEEEEECCBTT-C-TTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHH
T ss_pred CceeEEecCcCCCCC-C-cchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhhHHH
Confidence 345555555554322 2 2345566667776554 4333332211 1333332221 1 2356666666677777
Q ss_pred HHHHHHHHhhcC---CCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCC-hHHHHhhCCCCCHHHHHHHH
Q 026844 76 LLETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEELEVLPHLEAEDLAKFV 151 (232)
Q Consensus 76 ll~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~-~~~~l~~l~~it~edl~~f~ 151 (232)
+++.+.+.+..+ .+++++|+.+|..++.++...... |...+.......+....+. .++..+.++++|.+|++++.
T Consensus 326 ~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 404 (434)
T 3gwb_A 326 TLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTAS-NADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAM 404 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHcCCCccHHHHHHHHHHhCCHHHHHHHH
Confidence 777777766554 589999999999999998876554 8888877776666655554 67888999999999999999
Q ss_pred HHHHhhHhhhheeccc
Q 026844 152 PMMLSRTFLECYIAGS 167 (232)
Q Consensus 152 ~~~~~~~~~~~lv~Gn 167 (232)
++++........+.|+
T Consensus 405 ~~~l~~~~~~~~vvg~ 420 (434)
T 3gwb_A 405 NKHLNVDKMVIVSAGP 420 (434)
T ss_dssp HHHCCGGGCEEEEEEC
T ss_pred HHhcChhhEEEEEEcC
Confidence 9999888888888886
No 21
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=98.15 E-value=0.00011 Score=63.23 Aligned_cols=160 Identities=10% Similarity=0.059 Sum_probs=105.2
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--------hhhhhhccc--ccccEEEEEe-----eCce-eEEEEee
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY--------LNEYAYYAQ--VAGLDYGINH-----TESG-FEVTVVG 68 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~--------l~e~~y~A~--~Agl~~~i~~-----~~~g-~~l~v~G 68 (232)
+.+.+.+.+..|.. .+ .......++..++... ++..++... ..|+.|++++ ...| +.+.+..
T Consensus 251 ~~~~v~~~~~~~~~-~~-~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~ 328 (439)
T 1pp9_B 251 SLVHAALVAESAAI-GS-AEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTIS 328 (439)
T ss_dssp SEEEEEEEEECCCT-TS-HHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEEEEecCCCC-Cc-hHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEe
Confidence 45666666666543 23 4555666777777421 122222111 1233333322 1234 4566665
Q ss_pred ccchHHHHHHHHHHHhhc---CCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhcc-CCCCChHHHHhhCCCCCH
Q 026844 69 YNHKLRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEA 144 (232)
Q Consensus 69 ~s~kl~~ll~~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~-~~~~~~~~~l~~l~~it~ 144 (232)
=.++....++.+.+.+.. ..+++++|+.+|..++.++...... |...+.......+. ......++..+.++++|.
T Consensus 329 ~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~ 407 (439)
T 1pp9_B 329 QAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVES-SEGFLDEVGSQALAAGSYTPPSTVLQQIDAVAD 407 (439)
T ss_dssp EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCH
Confidence 556788888777766654 4699999999999999998876544 87777776655554 334457888999999999
Q ss_pred HHHHHHHHHHHhhHhhhheecccc
Q 026844 145 EDLAKFVPMMLSRTFLECYIAGSI 168 (232)
Q Consensus 145 edl~~f~~~~~~~~~~~~lv~Gni 168 (232)
+|++++.++++. ......+.|+.
T Consensus 408 ~dv~~~a~~~~~-~~~~~~v~g~~ 430 (439)
T 1pp9_B 408 ADVINAAKKFVS-GRKSMAASGNL 430 (439)
T ss_dssp HHHHHHHHHHHH-SCEEEEEEECG
T ss_pred HHHHHHHHHHhc-CCceEEEECCc
Confidence 999999999987 56777788864
No 22
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.14 E-value=2.4e-05 Score=67.16 Aligned_cols=161 Identities=10% Similarity=0.010 Sum_probs=109.0
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhhhcccc--cccEEEEEee-----Cce-eEEEEeeccchHHH
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-LNEYAYYAQV--AGLDYGINHT-----ESG-FEVTVVGYNHKLRI 75 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~-l~e~~y~A~~--Agl~~~i~~~-----~~g-~~l~v~G~s~kl~~ 75 (232)
+.+.+.+.+..+.. .+ .......++..++... ++.-++.... .|+.|++++. +.| +.+.+..-.++...
T Consensus 241 ~~~~v~~~~~~~~~-~~-~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 318 (424)
T 3amj_B 241 TQAHIAIGMPTLKR-GD-PDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADE 318 (424)
T ss_dssp SEEEEEEEEEEEBT-TC-TTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHH
T ss_pred CccEEEeeccCCCC-CC-cchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHH
Confidence 45555555554432 22 3345557777776654 4444443322 3555555432 123 56666665667877
Q ss_pred HHHHHHHHhh---cCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCCC-hHHHHhhCCCCCHHHHHHHH
Q 026844 76 LLETIFQKIA---QFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEELEVLPHLEAEDLAKFV 151 (232)
Q Consensus 76 ll~~i~~~l~---~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~-~~~~l~~l~~it~edl~~f~ 151 (232)
+++.+.+.+. +..+++++|+.+|..++.++...... |...+.......+....+. .++..+.++++|.+|++++.
T Consensus 319 ~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 397 (424)
T 3amj_B 319 AVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDS-NAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAF 397 (424)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSS-HHHHHHHHHHHHHTTCCTTTTTSHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCC-HHHHHHHHHHHHHcCCChhHHHHHHHHHHcCCHHHHHHHH
Confidence 7777766665 44699999999999999998876554 8777777766665554444 56778899999999999999
Q ss_pred HHHHhhHhhhheecccc
Q 026844 152 PMMLSRTFLECYIAGSI 168 (232)
Q Consensus 152 ~~~~~~~~~~~lv~Gni 168 (232)
++++.......++.|+-
T Consensus 398 ~~~l~~~~~~~~~~~~~ 414 (424)
T 3amj_B 398 ARHVKRENLITVVVGGK 414 (424)
T ss_dssp HHHCCGGGCEEEEEECC
T ss_pred HHhcCccceEEEEECCh
Confidence 99998878888888864
No 23
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.11 E-value=3.1e-05 Score=66.36 Aligned_cols=159 Identities=12% Similarity=0.083 Sum_probs=110.4
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccc-cccEEEEEee-----Cce-eEEEEeeccchHHHHH
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQV-AGLDYGINHT-----ESG-FEVTVVGYNHKLRILL 77 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~~-Agl~~~i~~~-----~~g-~~l~v~G~s~kl~~ll 77 (232)
+.+.+.+.+..|.. .++ ......++..+|....+.-++.... .|+.|++++. +.| +.+.+..=.++...++
T Consensus 234 ~q~~~~~~~~~~~~-~~~-d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~ 311 (406)
T 3eoq_A 234 RALYLVALFPGVAY-QEE-ARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVL 311 (406)
T ss_dssp SSEEEEEEEECCCT-TCT-THHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHH
T ss_pred cceEEEEEecCCCC-CCc-hHHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchHHHHH
Confidence 45666666666643 333 3445577777776543332222111 4555555432 224 5666666667888888
Q ss_pred HHHHHHhhcC---CCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhcc-CCCCChHHHHhhCCCCCHHHHHHHHHH
Q 026844 78 ETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPM 153 (232)
Q Consensus 78 ~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~-~~~~~~~~~l~~l~~it~edl~~f~~~ 153 (232)
+.+.+.+... .+++++++++|.+++.++...... |...+.......+. .+..+.++.++.++++|.+|+++..++
T Consensus 312 ~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~ 390 (406)
T 3eoq_A 312 AVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGET-PMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLER 390 (406)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 8887776654 599999999999999999766544 77788777666554 445568999999999999999999999
Q ss_pred HHhhHhhhheeccc
Q 026844 154 MLSRTFLECYIAGS 167 (232)
Q Consensus 154 ~~~~~~~~~lv~Gn 167 (232)
++..... ..+.|.
T Consensus 391 ~l~~~~~-~~vvGp 403 (406)
T 3eoq_A 391 GFLEKGL-YYLVLP 403 (406)
T ss_dssp TTTTSCE-EEEEEC
T ss_pred hcCcccE-EEEECC
Confidence 9987777 788885
No 24
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=98.11 E-value=4.4e-05 Score=66.18 Aligned_cols=161 Identities=11% Similarity=0.062 Sum_probs=109.2
Q ss_pred eeEEEEEEeCCCC--CCCHHHHHHHHHHHHHHHHhhhhhhhcc--cccccEEEEEee------C-ce-eEEEEeeccc-h
Q 026844 6 KAFVKIYFNCPHA--SSSPESEVLTDIFTRLLLDYLNEYAYYA--QVAGLDYGINHT------E-SG-FEVTVVGYNH-K 72 (232)
Q Consensus 6 k~~i~~~i~~~~~--~~s~~~~~l~~l~~~ll~~~l~e~~y~A--~~Agl~~~i~~~------~-~g-~~l~v~G~s~-k 72 (232)
.+.+.+.+..|.. ..+........++..++....+..++.. +..|+.|++++. + .| +.+.+.+-.+ +
T Consensus 244 ~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~ 323 (445)
T 3ami_A 244 LPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVT 323 (445)
T ss_dssp SCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCC
T ss_pred ccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCC
Confidence 3445555555551 2213455666788888876544444443 234666666542 2 24 4566655555 3
Q ss_pred HHHHHHHHHHHhhc---CCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCCC-ChHHHHhhCCCCCHHHHH
Q 026844 73 LRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTW-PWMEELEVLPHLEAEDLA 148 (232)
Q Consensus 73 l~~ll~~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~-~~~~~l~~l~~it~edl~ 148 (232)
...+++.+.+.|.. -.+++++++++|.+++.++...... |...+..+....+....+ ..++..+.++.+|.+|+.
T Consensus 324 ~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~ 402 (445)
T 3ami_A 324 IAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDS-LMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVK 402 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHH
Confidence 66666666655554 4699999999999999999876644 777777777777665444 467888999999999999
Q ss_pred HHHHHHHhhHhhhheeccc
Q 026844 149 KFVPMMLSRTFLECYIAGS 167 (232)
Q Consensus 149 ~f~~~~~~~~~~~~lv~Gn 167 (232)
++.++++........+.|.
T Consensus 403 ~~a~~~l~~~~~~~~~~~p 421 (445)
T 3ami_A 403 AAAARLLTDDTLTVANLVP 421 (445)
T ss_dssp HHHHTTSCSTTEEEEEEEE
T ss_pred HHHHHHcCcCCeEEEEEcc
Confidence 9999999876777777774
No 25
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.09 E-value=7.8e-05 Score=63.98 Aligned_cols=161 Identities=11% Similarity=0.071 Sum_probs=106.6
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccc--cccEEEEEe-----eCce-eEEEEeeccchHHH
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQV--AGLDYGINH-----TESG-FEVTVVGYNHKLRI 75 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~~--Agl~~~i~~-----~~~g-~~l~v~G~s~kl~~ 75 (232)
.+.+.+.+.+..+... ++ ......++..+|....+..++.... .|+.|++++ .+.| +.+.+..=.++...
T Consensus 232 ~~q~~v~~~~~~~~~~-~~-d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~ 309 (421)
T 3hdi_A 232 TEQAHLCLGYPGLPIG-DK-DVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDD 309 (421)
T ss_dssp CSEEEEEEEEECCCTT-CT-THHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHH
T ss_pred CCceEEEEEEecCCCC-Cc-hHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHHHH
Confidence 3566677777665432 33 4445566666665433333322221 233232221 2234 45555555567888
Q ss_pred HHHHHHHHhhcC---CCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhc-cCCCCChHHHHhhCCCCCHHHHHHHH
Q 026844 76 LLETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLIL-QDQTWPWMEELEVLPHLEAEDLAKFV 151 (232)
Q Consensus 76 ll~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l-~~~~~~~~~~l~~l~~it~edl~~f~ 151 (232)
+++.+.+.+... .+++++++++|..++.++...... +...+.......+ .....+.++.++.++++|.+|++++.
T Consensus 310 ~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 388 (421)
T 3hdi_A 310 LVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLES-TNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLA 388 (421)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHH
Confidence 877777666554 699999999999999998766554 7676766644444 34456688999999999999999999
Q ss_pred HHHHhhHhhhheecccc
Q 026844 152 PMMLSRTFLECYIAGSI 168 (232)
Q Consensus 152 ~~~~~~~~~~~lv~Gni 168 (232)
++++ .......+.|+.
T Consensus 389 ~~~~-~~~~~~~vvgp~ 404 (421)
T 3hdi_A 389 KILL-SASPSISLINAN 404 (421)
T ss_dssp HHHT-TSCCEEEEEESS
T ss_pred HHHc-ccCcEEEEECch
Confidence 9999 778888889974
No 26
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.08 E-value=3.5e-05 Score=66.16 Aligned_cols=158 Identities=14% Similarity=0.164 Sum_probs=102.3
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-------------hhhhhhhcccccccEEEEEee-----Cce-eEEE
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-------------YLNEYAYYAQVAGLDYGINHT-----ESG-FEVT 65 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~-------------~l~e~~y~A~~Agl~~~i~~~-----~~g-~~l~ 65 (232)
|.+.+.+.+..|... + .......++..++.. .|.+.+.. .|+.|++++. ..| +.+.
T Consensus 231 ~~~~v~~~~~~~~~~-~-~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe---~gl~y~v~~~~~~~~~~g~~~i~ 305 (431)
T 3cx5_A 231 PKAWISLAVEGEPVN-S-PNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQE---YQLCDNFNHFSLSYKDSGLWGFS 305 (431)
T ss_dssp SSEEEEEEEECCCTT-C-TTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHT---TTCCSEEEEEEEECSSCEEEEEE
T ss_pred CceEEEEEeecCCCC-C-ccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHh---cCceeeEeEeecccCCCceEEEE
Confidence 556666666665432 2 234445566666652 22222211 1333333221 234 4565
Q ss_pred Eeecc-chHHHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHhhh--hcccChHHHHHHHHHHhc-cCCCCChHHHHhhC
Q 026844 66 VVGYN-HKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHN--NKFLQPFQLAMYYCSLIL-QDQTWPWMEELEVL 139 (232)
Q Consensus 66 v~G~s-~kl~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n--~~~~~p~~~a~~~~~~~l-~~~~~~~~~~l~~l 139 (232)
+..=. ++...+++.+.+.+... .+++++|+.+|..++.++.. .. +.|...+.......+ .......++..+.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 384 (431)
T 3cx5_A 306 TATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYES-GNPVNDANLLGAEVLIKGSKLSLGEAFKKI 384 (431)
T ss_dssp EEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSC-SCHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred EeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcc-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 55545 67777776666554433 79999999999999999988 54 448788877666543 44444578889999
Q ss_pred CCCCHHHHHHHHHHHHhhHhhhheecccc
Q 026844 140 PHLEAEDLAKFVPMMLSRTFLECYIAGSI 168 (232)
Q Consensus 140 ~~it~edl~~f~~~~~~~~~~~~lv~Gni 168 (232)
+++|.+|++++.++++........+.|+.
T Consensus 385 ~~vt~~dv~~~a~~~l~~~~~~~~v~g~~ 413 (431)
T 3cx5_A 385 DAITVKDVKAWAGKRLWDQDIAIAGTGQI 413 (431)
T ss_dssp HHCCHHHHHHHHHHHTTTCCCEEEEEESC
T ss_pred hcCCHHHHHHHHHHHcccCCcEEEEEcch
Confidence 99999999999999997666777888853
No 27
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.00 E-value=0.00019 Score=61.88 Aligned_cols=162 Identities=11% Similarity=0.082 Sum_probs=104.2
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH---------hhhhhhhccc--ccccEEEEEe-----eCce-eEEEE
Q 026844 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD---------YLNEYAYYAQ--VAGLDYGINH-----TESG-FEVTV 66 (232)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~---------~l~e~~y~A~--~Agl~~~i~~-----~~~g-~~l~v 66 (232)
.|.+.+.+.+..|.. .+ .......++..+|.. ..+..++... ..|+.|++++ ...| +.+.+
T Consensus 244 ~~~~~v~~~~~~~~~-~~-~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~ 321 (443)
T 1hr6_B 244 LPTTHIAIALEGVSW-SA-PDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYI 321 (443)
T ss_dssp CSEEEEEEEEECCCT-TC-TTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEE
T ss_pred ccceEEEEEEecCCC-CC-ccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEE
Confidence 356667777766543 22 234455666666643 1112122111 1133222221 1234 45555
Q ss_pred eec--cchHHHHHHHHHHHh---hcCCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHh-ccCCCCChHHHHhhCC
Q 026844 67 VGY--NHKLRILLETIFQKI---AQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEELEVLP 140 (232)
Q Consensus 67 ~G~--s~kl~~ll~~i~~~l---~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~-l~~~~~~~~~~l~~l~ 140 (232)
..= .++...+++.+.+.+ .+..+++++++.+|..++.++...... |...+....... ......+.++..+.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 400 (443)
T 1hr6_B 322 VTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDG-STAIVEDIGRQVVTTGKRLSPEEVFEQVD 400 (443)
T ss_dssp EEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred EecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 544 457888877776665 444599999999999999999876544 777776665554 3444566788899999
Q ss_pred CCCHHHHHHHHHHHHhhHhhhheecccc
Q 026844 141 HLEAEDLAKFVPMMLSRTFLECYIAGSI 168 (232)
Q Consensus 141 ~it~edl~~f~~~~~~~~~~~~lv~Gni 168 (232)
++|.+|++++.++++......+.+.|+.
T Consensus 401 ~vt~~dv~~~a~~~l~~~~~~~~v~g~~ 428 (443)
T 1hr6_B 401 KITKDDIIMWANYRLQNKPVSMVALGNT 428 (443)
T ss_dssp TCCHHHHHHHHHHHSSSCCEEEEEEECG
T ss_pred hCCHHHHHHHHHHHhccCCcEEEEECCc
Confidence 9999999999999997767778888964
No 28
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.97 E-value=0.00018 Score=62.91 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=107.8
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-----------hhhhhhccc--ccccEEEEEee-----Cce-eEEE
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-----------LNEYAYYAQ--VAGLDYGINHT-----ESG-FEVT 65 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~-----------l~e~~y~A~--~Agl~~~i~~~-----~~g-~~l~ 65 (232)
+.+.+.+.+..+.. .++ ......++..+|... +..-++... ..|+.|++.+. ..| +.+.
T Consensus 242 ~~~~v~~~~~~~~~-~~~-d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~ 319 (475)
T 1hr6_A 242 ELFHIQIGFEGLPI-DHP-DIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGIS 319 (475)
T ss_dssp CCEEEEEEEECCCT-TCT-THHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEE
T ss_pred cceEEEEEEecCCC-CCc-cHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEE
Confidence 45566666664433 233 333456666666421 223333222 12555554332 224 5677
Q ss_pred EeeccchHHHHHHHHHHHhhcC------CCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhc-cCCCCChHHHHhh
Q 026844 66 VVGYNHKLRILLETIFQKIAQF------KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLIL-QDQTWPWMEELEV 138 (232)
Q Consensus 66 v~G~s~kl~~ll~~i~~~l~~~------~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l-~~~~~~~~~~l~~ 138 (232)
+..=.+++...++.+.+.+... .+++++|+++|.+++.++..... .|...+..+...++ .....+.++..+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (475)
T 1hr6_A 320 LSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLE-SKLVELEDMGRQVLMHGRKIPVNEMISK 398 (475)
T ss_dssp EEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 7666678888888888777653 38999999999999999987544 47777777666543 4444568888999
Q ss_pred CCCCCHHHHHHHHHHHHhh---------Hhhhheecccc
Q 026844 139 LPHLEAEDLAKFVPMMLSR---------TFLECYIAGSI 168 (232)
Q Consensus 139 l~~it~edl~~f~~~~~~~---------~~~~~lv~Gni 168 (232)
++++|.+|++++.++++.. ....+.+.|+.
T Consensus 399 i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 399 IEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 9999999999999999976 36778888965
No 29
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.96 E-value=0.00022 Score=60.99 Aligned_cols=151 Identities=9% Similarity=0.021 Sum_probs=97.2
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccc--ccccEEEEEee---Cce-eEEEEeeccchHHHHHH
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQ--VAGLDYGINHT---ESG-FEVTVVGYNHKLRILLE 78 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~~y~A~--~Agl~~~i~~~---~~g-~~l~v~G~s~kl~~ll~ 78 (232)
+.+.+.+.+..|....+ .......++..++....+..++... ..|+.|++++. ..| +.+.+..=.+++..+++
T Consensus 253 ~~~~v~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~~~~~ 331 (425)
T 3d3y_A 253 AQSKLNLAYNTDIYYGD-SYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLR 331 (425)
T ss_dssp SSEEEEEEEECCCCTTS-TTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGHHHHHH
T ss_pred cccEEEEEeecCCCCCC-chHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhHHHHHH
Confidence 45566666666532223 3445556777777433232222221 12333333321 234 44555444557877777
Q ss_pred HHHHHhhc---CCCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhcc-CCCCChHHHHhhCCCCCHHHHHHHHHHH
Q 026844 79 TIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPMM 154 (232)
Q Consensus 79 ~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~-~~~~~~~~~l~~l~~it~edl~~f~~~~ 154 (232)
.+.+.+.. -.+++++|+.+|..++.++...... |...+.......+. ....+.++..+.++++|.+|++++.+++
T Consensus 332 ~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~ 410 (425)
T 3d3y_A 332 LISTELENIRLGKIRELEIEQTKAMLKNQYILALDN-AGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRL 410 (425)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccC-HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHhc
Confidence 77665554 4699999999999999998876554 88888777666666 4444578889999999999999999987
Q ss_pred Hhh
Q 026844 155 LSR 157 (232)
Q Consensus 155 ~~~ 157 (232)
+..
T Consensus 411 ~~~ 413 (425)
T 3d3y_A 411 ELQ 413 (425)
T ss_dssp EEE
T ss_pred cCc
Confidence 644
No 30
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.91 E-value=0.00019 Score=62.21 Aligned_cols=106 Identities=7% Similarity=-0.016 Sum_probs=82.3
Q ss_pred eEEEEeeccchHHHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHhhhhcccChHHHHHHHHHHh-ccCCCCChHHHHhh
Q 026844 62 FEVTVVGYNHKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEELEV 138 (232)
Q Consensus 62 ~~l~v~G~s~kl~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~-l~~~~~~~~~~l~~ 138 (232)
+.+.+..=.++...+++.+.+.+... .+++++++.+|..++.++..... .|...+....... +.....+.++..+.
T Consensus 320 ~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (446)
T 1pp9_A 320 LGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLD-GTTPVCEDIGRSLLTYGRRIPLAEWESR 398 (446)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHTSSCCCHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 55666655568888887777666443 49999999999999999986544 4877777765554 44445667888999
Q ss_pred CCCCCHHHHHHHHHHHHhhHhhhheecccc
Q 026844 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGSI 168 (232)
Q Consensus 139 l~~it~edl~~f~~~~~~~~~~~~lv~Gni 168 (232)
++++|.+|++++.++++......+.+.|+.
T Consensus 399 i~~vt~edv~~~a~~~~~~~~~~~~~~g~~ 428 (446)
T 1pp9_A 399 IAEVDARVVREVCSKYFYDQCPAVAGFGPI 428 (446)
T ss_dssp HHTCCHHHHHHHHHHHTTTCCCEEEEEESC
T ss_pred HHcCCHHHHHHHHHHHcCCCCcEEEEECCc
Confidence 999999999999999998767778889964
No 31
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=97.70 E-value=0.00012 Score=71.26 Aligned_cols=164 Identities=9% Similarity=0.051 Sum_probs=117.8
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh----hhcccc---cccEEEEEeeCceeEEEEeecc-chHHHHHHHH
Q 026844 9 VKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEY----AYYAQV---AGLDYGINHTESGFEVTVVGYN-HKLRILLETI 80 (232)
Q Consensus 9 i~~~i~~~~~~~s~~~~~l~~l~~~ll~~~l~e~----~y~A~~---Agl~~~i~~~~~g~~l~v~G~s-~kl~~ll~~i 80 (232)
+.+.+.++ .+...+++.++.-++-.+.... .+.... .|-..+...+.......+...+ +.++.++..+
T Consensus 113 f~vg~~te----p~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~~~l~~~L~l~ 188 (1193)
T 3s5m_A 113 FAFYVKTL----THSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIMGVY 188 (1193)
T ss_dssp EEEEEECC----CSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEECCC----CCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeEEcCCeEEEEEEecCHHHHHHHHHHH
Confidence 44555554 3345577778777776555321 111111 3445555555666777777777 8899999999
Q ss_pred HHHhhcCCCChhh--HHHH-----------------------------HHHHHHHhhhhcccChHHHHHHHHHHhccCCC
Q 026844 81 FQKIAQFKVKPDR--FSVI-----------------------------KEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT 129 (232)
Q Consensus 81 ~~~l~~~~~~~~~--F~~~-----------------------------k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~ 129 (232)
.+.+.++.++++. |.+- |..+..+++.... .|...+...+...+++..
T Consensus 189 ~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~-~p~~~~~~~l~~~lf~~h 267 (1193)
T 3s5m_A 189 MDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALS-SPLEDLYHEEMKYMFPDN 267 (1193)
T ss_dssp HHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTT-CHHHHHHHHHHHHHCTTS
T ss_pred HHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhC-CHHHHHHHHHHHHhCCCC
Confidence 9999999988777 8664 3467777776644 499999998888888652
Q ss_pred ---CChHHHHhhCCCCCHHHHHHHHHHHHhhHhhhheeccccH-----HHHHHHhc
Q 026844 130 ---WPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGSII-----QYIEDVFF 177 (232)
Q Consensus 130 ---~~~~~~l~~l~~it~edl~~f~~~~~~~~~~~~lv~Gni~-----~~i~~~l~ 177 (232)
+..-...+.|..+|++|+.+|+++++...++.+.++||+. +.+++.|.
T Consensus 268 pY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~ 323 (1193)
T 3s5m_A 268 VHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLG 323 (1193)
T ss_dssp GGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHHhc
Confidence 4445566788999999999999999999999999999763 44555553
No 32
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=97.66 E-value=0.0012 Score=58.16 Aligned_cols=161 Identities=9% Similarity=0.036 Sum_probs=100.0
Q ss_pred ceeEEEEEEeCCCCC-CCH---HHHHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeC----ceeEEEEeeccchHHHH
Q 026844 5 PKAFVKIYFNCPHAS-SSP---ESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTE----SGFEVTVVGYNHKLRIL 76 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~-~s~---~~~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~----~g~~l~v~G~s~kl~~l 76 (232)
+...+.+-+..|... .+. +......+...+|...|...+-.....|+.|++++.. ....+.+++-.++....
T Consensus 265 ~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~i~~~~~~~~~a 344 (492)
T 3go9_A 265 AQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVENLTAN 344 (492)
T ss_dssp SSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEEEECGGGHHHH
T ss_pred CCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchhhhhhcceEEEEEcCcccHHHH
Confidence 344555555554332 222 1222345555555544443222223456767666531 23456777778899888
Q ss_pred HHHHHHHhhcC---CCChhhHHHHHHHHHHHhhhhc----ccChHHHHHHHHHHhccCC-CCChHHH---H-hhCCCCCH
Q 026844 77 LETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNK----FLQPFQLAMYYCSLILQDQ-TWPWMEE---L-EVLPHLEA 144 (232)
Q Consensus 77 l~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~----~~~p~~~a~~~~~~~l~~~-~~~~~~~---l-~~l~~it~ 144 (232)
++.+.+.+..+ .+++++++++|.+++.++.... .+.+...|..+...++... ..++++. . +.++.+|.
T Consensus 345 ~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~ 424 (492)
T 3go9_A 345 MTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTL 424 (492)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCH
Confidence 88887776654 5999999999999988876542 3345666666665555443 3355553 3 45889999
Q ss_pred HHHHHHHHHHHhhHhhhheecc
Q 026844 145 EDLAKFVPMMLSRTFLECYIAG 166 (232)
Q Consensus 145 edl~~f~~~~~~~~~~~~lv~G 166 (232)
+|+.++.+++++.- ..+.|+|
T Consensus 425 edV~~~a~~~l~~~-~~~vvvg 445 (492)
T 3go9_A 425 AELNRELKQQLSQD-TTLVLMQ 445 (492)
T ss_dssp HHHHHHHHHHHTSC-CEEEEEE
T ss_pred HHHHHHHHHHhCCC-CeEEEEc
Confidence 99999999999864 4456666
No 33
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=97.54 E-value=0.00017 Score=68.84 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhh----hcc---cccccEEEEEeeCceeEEEEeec-cchHHHHHHHHHHHhhcCCC--Chh
Q 026844 23 ESEVLTDIFTRLLLDYLNEYA----YYA---QVAGLDYGINHTESGFEVTVVGY-NHKLRILLETIFQKIAQFKV--KPD 92 (232)
Q Consensus 23 ~~~~l~~l~~~ll~~~l~e~~----y~A---~~Agl~~~i~~~~~g~~l~v~G~-s~kl~~ll~~i~~~l~~~~~--~~~ 92 (232)
...+++-++.-|+-......- +.. ...|-..+...+.......+..- ++.+..++..+.+.+.++.+ +++
T Consensus 71 ~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~ 150 (995)
T 2fge_A 71 DSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAH 150 (995)
T ss_dssp SSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSH
T ss_pred CCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 346777777777744433211 111 11233344444444444455443 46899999999999999999 999
Q ss_pred hHHHH---------------HHHHHHHhhhhcccChHHHHHHHHHHhccCC---CCChHHHHhhCCCCCHHHHHHHHHHH
Q 026844 93 RFSVI---------------KEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWMEELEVLPHLEAEDLAKFVPMM 154 (232)
Q Consensus 93 ~F~~~---------------k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~---~~~~~~~l~~l~~it~edl~~f~~~~ 154 (232)
.|++- |..+..+++... ++|...+...+...++++ .+..-...+.|+++|.+++.+|++++
T Consensus 151 ~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~-~~p~~~~~~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~ 229 (995)
T 2fge_A 151 TFQQEGWHYELNDPSEDISYKGVVFNEMKGVY-SQPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQY 229 (995)
T ss_dssp HHHHHTCEEECSCTTSCCEEECHHHHHHHHHT-TSHHHHHHHHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHH
T ss_pred HHHHhhhhhhcccccccccccchHHHHHHhhh-CCHHHHHHHHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHh
Confidence 99987 677888888655 449999999888888864 23345567888899999999999999
Q ss_pred HhhHhhhheeccccH-----HHHHHHh
Q 026844 155 LSRTFLECYIAGSII-----QYIEDVF 176 (232)
Q Consensus 155 ~~~~~~~~lv~Gni~-----~~i~~~l 176 (232)
+...++.+.|.||+. +.+++.+
T Consensus 230 Y~p~n~~l~v~Gd~d~~~~~~~i~~~f 256 (995)
T 2fge_A 230 YHPSNARIWFYGDDDPVHRLRVLSEYL 256 (995)
T ss_dssp SSGGGEEEEEEESSCHHHHHHHHHHHH
T ss_pred CCccceEEEEEcCCCHHHHHHHHHHHH
Confidence 999999999999774 3455555
No 34
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=96.87 E-value=0.0016 Score=63.38 Aligned_cols=161 Identities=12% Similarity=0.185 Sum_probs=115.7
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhhc-------ccccccEEEEEee--------------Ccee
Q 026844 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-YLNEYAYY-------AQVAGLDYGINHT--------------ESGF 62 (232)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~l~~~ll~~-~l~e~~y~-------A~~Agl~~~i~~~--------------~~g~ 62 (232)
+-+++.+.|..+. -+.+...+..||+.++.+ .+....|. ...+|++++.... ...+
T Consensus 738 GIvY~~l~fdl~~--l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~ 815 (1193)
T 3s5m_A 738 GIVYLQFVFSLDH--LTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALF 815 (1193)
T ss_dssp TEEEEEEEEECTT--CCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEE
T ss_pred CeEEEEEEEECCC--CCHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccceE
Confidence 5566777777653 457888899999999854 44433333 4556787777542 1237
Q ss_pred EEEEeeccchHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHHHhhhhcccChHHHHHHHHHHhccCCC-----CC-----
Q 026844 63 EVTVVGYNHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT-----WP----- 131 (232)
Q Consensus 63 ~l~v~G~s~kl~~ll~~i~~~l~~~~~~~-~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~-----~~----- 131 (232)
.++....+++++.+++.+-+.|.++.+++ +++..+..+...++++...++++..|+..+...+.+.. ++
T Consensus 816 ~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~ 895 (1193)
T 3s5m_A 816 NLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENY 895 (1193)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHH
T ss_pred EEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCChHHH
Confidence 89999999999999999999999999876 47999999999999998887788788776655543211 00
Q ss_pred --hHHHHhh----CCCCCHHHHHHHHHHHHhhHhhhheecccc
Q 026844 132 --WMEELEV----LPHLEAEDLAKFVPMMLSRTFLECYIAGSI 168 (232)
Q Consensus 132 --~~~~l~~----l~~it~edl~~f~~~~~~~~~~~~lv~Gni 168 (232)
..++++. .+.+ .++|.++++.+++..++.+.++|+.
T Consensus 896 ~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~ 937 (1193)
T 3s5m_A 896 LKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDY 937 (1193)
T ss_dssp HHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECG
T ss_pred HHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeCh
Confidence 1111111 1122 6788999999998889999999965
No 35
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=68.17 E-value=11 Score=28.25 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEE--EEEeeCceeEEE-Eeeccc
Q 026844 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDY--GINHTESGFEVT-VVGYNH 71 (232)
Q Consensus 20 ~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~--~i~~~~~g~~l~-v~G~s~ 71 (232)
.+.+..++..+++++++.... -+.|.-++.|..| .....++.+.|+ .-|||+
T Consensus 55 ~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~~~L~ivGvGypira~~~g~~l~l~N~LG~sh 113 (178)
T 1vq8_E 55 DNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKA 113 (178)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEEEETTEEEEESGGGCSS
T ss_pred CCHHHHHHHHHHHHHHcCEEEEEccCeEEEEEEEeeCCceEEEEcCCEEEEEccccccc
Confidence 478889999999999988763 3777777777777 666666666665 567775
No 36
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=58.38 E-value=26 Score=26.08 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEEeeCceeEEEEeeccc
Q 026844 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGINHTESGFEVTVVGYNH 71 (232)
Q Consensus 20 ~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~ 71 (232)
.+.++.++..++..+++..+. -+.|.-++.|..|.+...++-+.| .-|||+
T Consensus 56 ~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~~~L~lvGvGyra~~~G~~l~l-~LG~Sh 110 (177)
T 1rl6_A 56 DEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVL-SVGYSH 110 (177)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEESTTCEEEEETTEEEE-ESSSSS
T ss_pred CCHHHHHHHHHHHHHHhCEEEeEcCCcEEEEEEEeeceEEEecCCEEEE-EecCCc
Confidence 477888999999999888763 366666666666666655555555 446664
No 37
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.20 E-value=28 Score=26.11 Aligned_cols=53 Identities=8% Similarity=0.199 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEE--EEEeeCceeEEE-Eeeccc
Q 026844 19 SSSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDY--GINHTESGFEVT-VVGYNH 71 (232)
Q Consensus 19 ~~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~--~i~~~~~g~~l~-v~G~s~ 71 (232)
..+.+..++...++++++.... -+.|.-.+.|..| .+...++.+.|+ .-|||+
T Consensus 59 ~~~kk~~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgypira~~~g~~l~l~n~LG~sh 118 (184)
T 3j21_F 59 FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIENFLGEKA 118 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEEEETTEEEEECGGGCSS
T ss_pred CCCHHHHHHHHHHHHHHHhhheeeccCeEEEEEEEEecccceEEEcCCEEEEEecCCccc
Confidence 4567788899999988888764 3667777777777 555555555555 458775
No 38
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=48.81 E-value=36 Score=26.13 Aligned_cols=53 Identities=17% Similarity=0.409 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEEeeCceeEEEEeeccchH
Q 026844 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKL 73 (232)
Q Consensus 20 ~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~kl 73 (232)
.+.+..++..++..+++..+. -+.|.-++.|..|.+...++.+.| .-|||+-.
T Consensus 84 ~~k~~ra~~Gt~rslI~NMI~GVt~Gf~kkLelvGvGYra~~~G~~L~L-~LG~SHpv 140 (212)
T 1nkw_E 84 DAQKHRALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEM-NIGYSHPV 140 (212)
T ss_pred CCHHHHHHHHHHHHHhhCEEEeeccCeEEEEEEeeeeeEEEcCCCEEEE-EccCCccE
Confidence 477888999999999988763 477777888888877766666666 56888543
No 39
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=47.99 E-value=13 Score=20.39 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=26.1
Q ss_pred hHHHHhhCCCCCHHHHHHHHHHHHhhHhhhh
Q 026844 132 WMEELEVLPHLEAEDLAKFVPMMLSRTFLEC 162 (232)
Q Consensus 132 ~~~~l~~l~~it~edl~~f~~~~~~~~~~~~ 162 (232)
.++.++.+.++|+-++.++++.+-..+.+..
T Consensus 3 ~~~iie~i~~lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHCCCc
Confidence 5788999999999999999998877766553
No 40
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=45.29 E-value=9.4 Score=19.58 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=20.8
Q ss_pred ChHHHHhhCCCCCHHHHHHHHHHHH
Q 026844 131 PWMEELEVLPHLEAEDLAKFVPMML 155 (232)
Q Consensus 131 ~~~~~l~~l~~it~edl~~f~~~~~ 155 (232)
+.++.++++.++|.-++.++++.+=
T Consensus 2 ~~~~iie~i~~lTvlEl~eLvk~lE 26 (30)
T 1zav_U 2 TIDEIIEAIEKLTVSELAELVKKLE 26 (30)
T ss_dssp CHHHHHHHHHHSBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4578899999999999998887764
No 41
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=44.85 E-value=54 Score=24.43 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEEeeCceeEEEEeeccc
Q 026844 19 SSSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGINHTESGFEVTVVGYNH 71 (232)
Q Consensus 19 ~~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~~i~~~~~g~~l~v~G~s~ 71 (232)
..+.+..++...++.+++..+. -+.|.-.+.|..|.+...++-+.| .-|||+
T Consensus 56 ~~~kk~~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgyra~~~g~~l~l-~LG~sh 111 (180)
T 3v2d_H 56 SDERRHKSLHGLTRTLIANAVKGVSEGYSKELLIKGIGYRARLVGRALEL-TVGFSH 111 (180)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEESTTCEEEEETTEEEE-ECSSSS
T ss_pred CCcHHHHHHHHHHHHHHhhhEEeecCCcEEEEEEEEEeeEEEECCCEEEE-EecCCe
Confidence 4567788889999998888764 366777777777766665666666 567775
No 42
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=43.76 E-value=35 Score=27.47 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccEEEEEeeCcee-EEEEeeccchHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 026844 24 SEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGF-EVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVT 102 (232)
Q Consensus 24 ~~~l~~l~~~ll~~~l~e~~y~A~~Agl~~~i~~~~~g~-~l~v~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~ 102 (232)
......++..+|...+.|..=.+ ++..+.. ..+.|+ .+.+.+ ++...+.+.+.+.+.+ .+++++++++|..++
T Consensus 233 ~~~~l~vl~~iLg~~lre~~gl~--~~~~~~~-~~~~g~~~i~~~~--~~~~~~~~~i~~~l~~-~~t~~el~~ak~~~~ 306 (352)
T 3cx5_B 233 SLAQYEVLANYLTSALSELSGLI--SSAKLDK-FTDGGLFTLFVRD--QDSAVVSSNIKKIVAD-LKKGKDLSPAINYTK 306 (352)
T ss_dssp THHHHHHHHHHHHSTTSTTGGGC--SEEEEEE-ETTEEEEEEEEEE--SCHHHHHHHHHHHHHH-HHSCEECGGGHHHHH
T ss_pred hHHHHHHHHHHhCcchhcccCce--EEEeecC-cCcceeEEEEEEe--CCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 45566777888876665532111 2212211 223353 444443 3444454444444443 278999999999999
Q ss_pred HHhhhhccc
Q 026844 103 KEYHNNKFL 111 (232)
Q Consensus 103 ~~~~n~~~~ 111 (232)
.++......
T Consensus 307 ~~~~~~~~~ 315 (352)
T 3cx5_B 307 LKNAVQNES 315 (352)
T ss_dssp HHHHHHCCS
T ss_pred HHHHhhhhc
Confidence 998865443
No 43
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=36.10 E-value=45 Score=21.61 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=30.3
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~~ 82 (232)
.|...|+.=.+....+| +++.+.|-.+.+..+++.+-+
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 24 EADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 45666887778888888 999999999888888776643
No 44
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=34.71 E-value=46 Score=21.41 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=30.2
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| +++.+.|-.+.+..+++.+-
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 24 KALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 45666887778888888 99999999999888887775
No 45
>1r9f_A Core protein P19; protein-RNA complex, dimer, double helix, viral protein/RNA complex; 1.85A {Tomato bushy stunt virus} SCOP: d.255.1.1
Probab=34.41 E-value=80 Score=21.48 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=25.7
Q ss_pred ccccEEEEEeeCceeEEEEeeccchHHHHHHHHH
Q 026844 48 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 48 ~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~ 81 (232)
..|..|+|.. +|+.++++|=+-.|..|++..+
T Consensus 85 QigCTYSIR~--RGvs~T~SGGSrtLq~L~eMAi 116 (136)
T 1r9f_A 85 QIGCTYSIRF--RGVSITVSGGSRTLQHLCEMAI 116 (136)
T ss_dssp CCEEEEEEEE--TTEEEEEEEEGGGHHHHHHHHH
T ss_pred ccceeEEEEE--eeEEEEEcCCcHHHHHHHHHHH
Confidence 4466777775 8999999999999988887554
No 46
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=31.32 E-value=56 Score=21.70 Aligned_cols=37 Identities=32% Similarity=0.343 Sum_probs=29.7
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| +++.+.|-.+.+..|+..+-
T Consensus 36 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 73 (101)
T 2bjd_A 36 HAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 73 (101)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 45666887778888888 99999999988887777664
No 47
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=30.43 E-value=59 Score=21.41 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=29.6
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| +++.+.|-.+.+..|++.+-
T Consensus 30 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 30 EGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 45666887778888888 99999999988877776664
No 48
>1rpu_A 19 kDa protein; RNAI, protein-RNA complex, RNA double helix, RNA length recognition, RNA binding protein/RNA complex; 2.50A {Carnation italian ringspot virus} SCOP: d.255.1.1
Probab=30.17 E-value=96 Score=21.95 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=26.6
Q ss_pred cccccEEEEEeeCceeEEEEeeccchHHHHHHHHH
Q 026844 47 QVAGLDYGINHTESGFEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 47 ~~Agl~~~i~~~~~g~~l~v~G~s~kl~~ll~~i~ 81 (232)
...|..|+|.. +|+.++++|=+-.|..|++..+
T Consensus 106 ~QigCTYSIRf--RG~svT~SGGSrtLq~L~eMAi 138 (172)
T 1rpu_A 106 NQVGCTYSIRF--RGVSVTISGGSRTLQHLCEMAI 138 (172)
T ss_dssp SCCEEEEEEEE--TTEEEEEEEEGGGHHHHHHHHH
T ss_pred cccceeEEEEE--eeEEEEecCCcHHHHHHHHHHH
Confidence 34567888876 8999999999999988887554
No 49
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=29.65 E-value=59 Score=21.57 Aligned_cols=37 Identities=14% Similarity=-0.045 Sum_probs=29.4
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i~ 81 (232)
.|...|+.=.+....+| +++.+.|-.+.+..|++.+-
T Consensus 33 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~ 70 (102)
T 1urr_A 33 EAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLE 70 (102)
T ss_dssp HHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 45566787778888888 99999999888877777664
No 50
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.58 E-value=86 Score=23.57 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEE--eeCce--eEEE-Eeeccch
Q 026844 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGIN--HTESG--FEVT-VVGYNHK 72 (232)
Q Consensus 20 ~s~~~~~l~~l~~~ll~~~l~----e~~y~A~~Agl~~~i~--~~~~g--~~l~-v~G~s~k 72 (232)
.+.++.++..++.++++.... -+.|.-++.|..|.+. ..++| +.|+ .-|||+-
T Consensus 62 ~~k~~~a~~Gt~rsli~NmI~GVt~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~ 123 (192)
T 2zkr_e 62 GNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYI 123 (192)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSC
T ss_pred CCHHHHHHHHHHHHHHhCEEEeeccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCccc
Confidence 467888999999999988764 3677777777777765 43355 4443 4688854
No 51
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=28.71 E-value=49 Score=21.47 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=28.5
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i 80 (232)
.|...|+.=.+....+| +++.+.|-.+.+..+++.+
T Consensus 26 ~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l 62 (91)
T 1w2i_A 26 EARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWA 62 (91)
T ss_dssp HHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHH
Confidence 45566887778888888 9999999988887776655
No 52
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=24.87 E-value=48 Score=21.54 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=28.1
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i 80 (232)
.|...|+.=.+....+| +++.+.|-.+.+..|++.+
T Consensus 26 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 26 EAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp HHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 35555776667777788 9999999998888887776
No 53
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=21.62 E-value=86 Score=20.62 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=28.1
Q ss_pred cccccccEEEEEeeCce-eEEEEeeccchHHHHHHHH
Q 026844 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (232)
Q Consensus 45 ~A~~Agl~~~i~~~~~g-~~l~v~G~s~kl~~ll~~i 80 (232)
.|...|+.=-+....+| +++.+.|-.+.+..|+..+
T Consensus 34 ~A~~lgL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l 70 (98)
T 3trg_A 34 KAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWL 70 (98)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEECCCCEEEEEEEECHHHHHHHHHHH
Confidence 45666787777877888 9999999988887776655
Done!