Query 026846
Match_columns 232
No_of_seqs 215 out of 3169
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 13:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462 C2H2-type Zn-finger pr 99.9 1.3E-25 2.9E-30 174.3 2.5 100 1-111 166-265 (279)
2 KOG2462 C2H2-type Zn-finger pr 99.9 4.1E-23 8.9E-28 160.5 5.2 104 2-117 136-242 (279)
3 KOG1074 Transcriptional repres 99.8 2.5E-20 5.5E-25 163.0 0.2 49 1-51 358-406 (958)
4 KOG1074 Transcriptional repres 99.7 4.4E-18 9.6E-23 149.1 4.4 55 60-116 880-934 (958)
5 KOG3576 Ovo and related transc 99.7 1.6E-17 3.4E-22 123.6 0.2 107 1-116 122-239 (267)
6 KOG3576 Ovo and related transc 99.6 6.3E-17 1.4E-21 120.5 0.3 88 21-117 114-201 (267)
7 KOG3623 Homeobox transcription 99.5 3.8E-15 8.3E-20 129.1 3.1 107 1-111 215-331 (1007)
8 KOG3623 Homeobox transcription 99.5 6.8E-15 1.5E-19 127.6 0.3 87 21-118 891-977 (1007)
9 KOG3608 Zn finger proteins [Ge 99.4 3.1E-13 6.6E-18 108.7 3.4 107 1-111 184-314 (467)
10 KOG3608 Zn finger proteins [Ge 99.4 3.4E-13 7.4E-18 108.4 2.9 115 1-123 268-386 (467)
11 PHA00733 hypothetical protein 99.1 1.6E-10 3.5E-15 82.8 4.7 83 22-115 38-125 (128)
12 PLN03086 PRLI-interacting fact 99.0 5.4E-10 1.2E-14 97.5 5.8 98 1-114 458-565 (567)
13 PF13465 zf-H2C2_2: Zinc-finge 98.9 1.2E-09 2.6E-14 55.7 2.3 26 11-38 1-26 (26)
14 PHA02768 hypothetical protein; 98.9 1.2E-09 2.6E-14 65.1 2.0 43 24-105 5-47 (55)
15 PHA02768 hypothetical protein; 98.7 8.1E-09 1.8E-13 61.5 2.0 39 1-43 10-48 (55)
16 PF13465 zf-H2C2_2: Zinc-finge 98.6 2.9E-09 6.3E-14 54.3 -0.9 23 77-101 4-26 (26)
17 PLN03086 PRLI-interacting fact 98.6 2.6E-08 5.7E-13 87.1 3.4 76 23-112 452-537 (567)
18 KOG3993 Transcription factor ( 98.6 4.8E-08 1E-12 80.9 4.1 112 1-119 272-386 (500)
19 KOG3993 Transcription factor ( 98.5 1.1E-07 2.4E-12 78.8 4.0 113 1-117 300-486 (500)
20 PHA00616 hypothetical protein 98.3 2.9E-07 6.3E-12 52.2 1.7 32 24-57 1-32 (44)
21 COG5189 SFP1 Putative transcri 98.3 3.3E-07 7.2E-12 73.4 2.5 73 21-110 346-419 (423)
22 PHA00732 hypothetical protein 98.2 1.1E-06 2.4E-11 57.3 2.7 24 24-49 1-25 (79)
23 PHA00733 hypothetical protein 98.1 3.8E-06 8.3E-11 60.2 4.5 74 2-84 46-124 (128)
24 PF05605 zf-Di19: Drought indu 98.1 8.8E-06 1.9E-10 49.2 4.6 53 24-114 2-54 (54)
25 PHA00616 hypothetical protein 97.9 5.8E-06 1.3E-10 47.0 1.6 27 87-115 1-27 (44)
26 PF00096 zf-C2H2: Zinc finger, 97.8 1.4E-05 3.1E-10 39.2 1.9 23 25-49 1-23 (23)
27 PF00096 zf-C2H2: Zinc finger, 97.8 1.9E-05 4.1E-10 38.7 1.8 22 88-111 1-22 (23)
28 PF13894 zf-C2H2_4: C2H2-type 97.7 2.6E-05 5.7E-10 38.4 2.2 24 88-113 1-24 (24)
29 PHA00732 hypothetical protein 97.6 4.1E-05 8.9E-10 49.9 2.4 42 1-50 6-48 (79)
30 PF13912 zf-C2H2_6: C2H2-type 97.6 3.9E-05 8.4E-10 39.2 1.6 26 87-114 1-26 (27)
31 COG5048 FOG: Zn-finger [Genera 97.5 2.7E-05 5.9E-10 67.0 0.4 115 1-115 294-444 (467)
32 PF13894 zf-C2H2_4: C2H2-type 97.4 0.00011 2.4E-09 36.0 2.1 24 25-50 1-24 (24)
33 PF12756 zf-C2H2_2: C2H2 type 97.4 9.3E-05 2E-09 50.4 2.4 73 26-112 1-73 (100)
34 PF06524 NOA36: NOA36 protein; 97.4 0.00071 1.5E-08 53.1 7.0 27 19-48 137-163 (314)
35 PF05605 zf-Di19: Drought indu 97.2 0.0008 1.7E-08 40.5 4.2 45 1-50 7-53 (54)
36 PF13912 zf-C2H2_6: C2H2-type 97.1 0.00025 5.5E-09 36.1 1.5 25 24-50 1-25 (27)
37 PF09237 GAGA: GAGA factor; I 97.0 0.00063 1.4E-08 39.6 2.6 40 13-54 12-52 (54)
38 PF09237 GAGA: GAGA factor; I 96.8 0.0018 3.9E-08 37.7 3.1 31 83-115 20-50 (54)
39 smart00355 ZnF_C2H2 zinc finge 96.7 0.0015 3.3E-08 32.3 2.2 24 25-50 1-24 (26)
40 PF12756 zf-C2H2_2: C2H2 type 96.7 0.0013 2.8E-08 44.7 2.3 47 1-49 4-73 (100)
41 smart00355 ZnF_C2H2 zinc finge 96.6 0.0019 4.1E-08 32.0 2.1 22 88-111 1-22 (26)
42 KOG4377 Zn-finger protein [Gen 96.6 0.0054 1.2E-07 51.4 5.6 106 1-113 278-427 (480)
43 PF13909 zf-H2C2_5: C2H2-type 96.5 0.0017 3.8E-08 31.9 1.6 24 88-114 1-24 (24)
44 KOG4173 Alpha-SNAP protein [In 96.0 0.0011 2.5E-08 50.2 -1.0 86 22-115 77-172 (253)
45 PF06524 NOA36: NOA36 protein; 95.9 0.0088 1.9E-07 47.2 3.5 18 86-105 208-225 (314)
46 PF13909 zf-H2C2_5: C2H2-type 95.9 0.0073 1.6E-07 29.6 2.1 23 25-50 1-23 (24)
47 PF12874 zf-met: Zinc-finger o 95.8 0.0056 1.2E-07 30.3 1.5 23 25-49 1-23 (25)
48 PRK04860 hypothetical protein; 95.7 0.0059 1.3E-07 45.5 1.8 30 71-102 127-156 (160)
49 PF12874 zf-met: Zinc-finger o 95.6 0.0075 1.6E-07 29.8 1.5 22 88-111 1-22 (25)
50 COG5048 FOG: Zn-finger [Genera 95.0 0.016 3.5E-07 49.8 2.5 77 23-104 288-368 (467)
51 KOG1146 Homeobox protein [Gene 94.8 0.0099 2.1E-07 56.8 0.7 88 4-111 444-540 (1406)
52 PF12171 zf-C2H2_jaz: Zinc-fin 94.8 0.01 2.2E-07 30.1 0.5 22 88-111 2-23 (27)
53 PF09538 FYDLN_acid: Protein o 94.8 0.052 1.1E-06 37.6 4.1 17 84-102 23-39 (108)
54 COG5189 SFP1 Putative transcri 94.2 0.035 7.7E-07 45.2 2.3 30 84-113 346-375 (423)
55 PF12171 zf-C2H2_jaz: Zinc-fin 94.2 0.016 3.5E-07 29.3 0.3 23 25-49 2-24 (27)
56 COG5236 Uncharacterized conser 93.3 0.59 1.3E-05 38.8 7.9 95 8-117 200-309 (493)
57 COG4049 Uncharacterized protei 93.1 0.049 1.1E-06 32.3 1.1 33 81-115 11-43 (65)
58 PF13913 zf-C2HC_2: zinc-finge 93.0 0.09 1.9E-06 26.1 1.9 21 88-111 3-23 (25)
59 smart00451 ZnF_U1 U1-like zinc 91.8 0.13 2.8E-06 27.5 1.7 23 87-111 3-25 (35)
60 smart00451 ZnF_U1 U1-like zinc 91.3 0.17 3.6E-06 27.1 1.8 24 24-49 3-26 (35)
61 KOG4124 Putative transcription 91.2 0.057 1.2E-06 44.5 -0.2 72 22-109 347-418 (442)
62 KOG1146 Homeobox protein [Gene 91.0 0.34 7.4E-06 46.9 4.5 75 22-117 1282-1356(1406)
63 KOG2893 Zn finger protein [Gen 89.3 0.11 2.3E-06 40.7 -0.1 40 1-46 15-54 (341)
64 TIGR02300 FYDLN_acid conserved 88.8 0.95 2.1E-05 32.0 4.3 20 84-105 23-42 (129)
65 KOG2893 Zn finger protein [Gen 88.5 0.13 2.8E-06 40.3 -0.1 51 22-114 9-59 (341)
66 KOG2231 Predicted E3 ubiquitin 88.3 0.88 1.9E-05 41.4 4.9 93 8-110 161-260 (669)
67 PF02892 zf-BED: BED zinc fing 88.1 0.3 6.6E-06 27.8 1.3 28 84-113 13-44 (45)
68 KOG2785 C2H2-type Zn-finger pr 87.2 0.89 1.9E-05 38.3 4.0 81 24-112 3-91 (390)
69 COG5236 Uncharacterized conser 85.0 1.1 2.3E-05 37.3 3.3 89 25-115 152-246 (493)
70 PF02724 CDC45: CDC45-like pro 84.5 0.67 1.5E-05 42.4 2.2 10 40-49 39-48 (622)
71 PF07800 DUF1644: Protein of u 84.3 3.9 8.4E-05 30.2 5.6 56 62-119 83-138 (162)
72 KOG4173 Alpha-SNAP protein [In 84.1 0.37 8E-06 36.9 0.3 47 2-48 112-168 (253)
73 smart00614 ZnF_BED BED zinc fi 82.6 1 2.3E-05 26.3 1.8 25 88-114 19-48 (50)
74 KOG2231 Predicted E3 ubiquitin 82.4 1.2 2.6E-05 40.6 2.9 103 7-114 125-237 (669)
75 PF12013 DUF3505: Protein of u 81.6 1.2 2.5E-05 30.9 2.0 26 87-114 80-109 (109)
76 KOG3130 Uncharacterized conser 79.9 0.86 1.9E-05 38.6 1.1 7 105-111 145-151 (514)
77 KOG2482 Predicted C2H2-type Zn 75.0 3.9 8.5E-05 34.1 3.5 21 1-21 200-222 (423)
78 COG4049 Uncharacterized protei 74.0 1.8 3.9E-05 25.8 1.0 31 18-50 11-41 (65)
79 PF04959 ARS2: Arsenite-resist 71.4 2.7 5.7E-05 33.0 1.7 32 84-117 74-105 (214)
80 PF05443 ROS_MUCR: ROS/MUCR tr 69.2 3.2 6.9E-05 29.9 1.6 27 85-116 70-96 (132)
81 KOG2186 Cell growth-regulating 68.3 3 6.6E-05 33.2 1.4 47 24-110 3-49 (276)
82 PF03145 Sina: Seven in absent 68.2 4.2 9.2E-05 31.3 2.3 58 24-117 14-75 (198)
83 PF05443 ROS_MUCR: ROS/MUCR tr 67.6 3.3 7.2E-05 29.8 1.4 24 25-53 73-96 (132)
84 KOG2785 C2H2-type Zn-finger pr 67.0 6.1 0.00013 33.5 3.0 46 1-48 171-242 (390)
85 PF15269 zf-C2H2_7: Zinc-finge 66.9 10 0.00023 21.5 3.0 22 88-111 21-42 (54)
86 KOG3064 RNA-binding nuclear pr 66.7 2.8 6.1E-05 33.4 1.0 17 95-111 108-124 (303)
87 KOG0127 Nucleolar protein fibr 62.0 4.2 9E-05 36.1 1.2 11 95-105 158-168 (678)
88 PF12013 DUF3505: Protein of u 59.2 8.1 0.00017 26.6 2.1 27 25-51 81-109 (109)
89 TIGR00622 ssl1 transcription f 55.2 40 0.00087 23.5 4.9 84 22-111 13-103 (112)
90 COG4957 Predicted transcriptio 54.8 6.2 0.00013 28.3 0.9 25 25-54 77-101 (148)
91 KOG3540 Beta amyloid precursor 54.7 11 0.00025 32.9 2.6 7 85-91 114-120 (615)
92 KOG4124 Putative transcription 53.9 11 0.00023 31.7 2.2 31 83-116 209-239 (442)
93 PF12907 zf-met2: Zinc-binding 50.9 5.1 0.00011 22.3 0.0 27 88-116 2-31 (40)
94 smart00734 ZnF_Rad18 Rad18-lik 50.1 15 0.00032 18.2 1.6 20 88-110 2-21 (26)
95 PRK09678 DNA-binding transcrip 48.4 7.1 0.00015 24.9 0.4 20 85-104 25-44 (72)
96 PF02176 zf-TRAF: TRAF-type zi 47.1 10 0.00022 22.7 1.0 26 22-48 7-32 (60)
97 PF04959 ARS2: Arsenite-resist 47.0 14 0.0003 29.0 1.8 28 22-51 75-102 (214)
98 COG5137 Histone chaperone invo 46.1 8.8 0.00019 29.9 0.6 14 88-103 97-110 (279)
99 KOG2482 Predicted C2H2-type Zn 43.8 18 0.0004 30.3 2.1 29 87-117 195-224 (423)
100 TIGR00373 conserved hypothetic 43.4 30 0.00065 25.7 3.1 24 18-43 103-126 (158)
101 KOG4167 Predicted DNA-binding 42.8 5.7 0.00012 36.6 -0.9 25 24-50 792-816 (907)
102 KOG0127 Nucleolar protein fibr 40.8 16 0.00034 32.7 1.4 6 86-91 125-130 (678)
103 PF04780 DUF629: Protein of un 40.4 19 0.00041 31.7 1.9 32 85-118 55-86 (466)
104 COG1592 Rubrerythrin [Energy p 39.7 19 0.00041 27.0 1.5 13 83-97 145-157 (166)
105 PF03286 Pox_Ag35: Pox virus A 39.4 1.8E+02 0.0039 22.6 7.5 17 95-111 10-26 (200)
106 cd00350 rubredoxin_like Rubred 38.7 22 0.00048 18.6 1.3 11 85-97 15-25 (33)
107 KOG3408 U1-like Zn-finger-cont 38.5 19 0.0004 25.4 1.2 26 84-111 54-79 (129)
108 smart00531 TFIIE Transcription 38.5 23 0.00049 25.9 1.8 20 20-41 95-114 (147)
109 PF13717 zinc_ribbon_4: zinc-r 37.3 21 0.00044 19.2 1.1 14 85-100 23-36 (36)
110 KOG4167 Predicted DNA-binding 36.9 9.5 0.00021 35.2 -0.5 27 86-114 791-817 (907)
111 PF13719 zinc_ribbon_5: zinc-r 36.6 24 0.00051 19.1 1.3 14 85-100 23-36 (37)
112 KOG1280 Uncharacterized conser 35.8 47 0.001 28.0 3.3 33 22-56 77-109 (381)
113 TIGR02098 MJ0042_CXXC MJ0042 f 35.4 23 0.0005 19.0 1.1 12 87-100 25-36 (38)
114 PF08790 zf-LYAR: LYAR-type C2 35.4 7.7 0.00017 19.7 -0.8 19 88-109 1-19 (28)
115 PF09538 FYDLN_acid: Protein o 35.3 1E+02 0.0023 21.3 4.6 12 88-101 10-21 (108)
116 PRK00464 nrdR transcriptional 34.3 22 0.00047 26.4 1.1 16 87-104 28-43 (154)
117 COG4530 Uncharacterized protei 33.7 40 0.00087 23.3 2.2 20 84-106 23-42 (129)
118 cd00729 rubredoxin_SM Rubredox 33.6 27 0.00059 18.5 1.1 10 86-97 17-26 (34)
119 KOG2295 C2H2 Zn-finger protein 33.5 27 0.00059 31.3 1.7 33 84-116 506-538 (648)
120 PF01363 FYVE: FYVE zinc finge 32.8 24 0.00052 21.8 1.0 14 85-100 23-36 (69)
121 smart00154 ZnF_AN1 AN1-like Zi 31.8 22 0.00047 19.6 0.6 14 87-102 12-25 (39)
122 COG5152 Uncharacterized conser 30.5 16 0.00035 28.0 -0.1 15 23-39 195-209 (259)
123 cd00065 FYVE FYVE domain; Zinc 30.2 41 0.00088 19.7 1.7 15 85-101 16-30 (57)
124 PF09986 DUF2225: Uncharacteri 30.1 21 0.00045 28.0 0.5 23 23-47 4-26 (214)
125 PF04606 Ogr_Delta: Ogr/Delta- 29.7 11 0.00023 21.7 -0.9 18 85-102 23-40 (47)
126 PRK06266 transcription initiat 29.7 47 0.001 25.2 2.3 21 20-42 113-133 (178)
127 PTZ00255 60S ribosomal protein 29.5 24 0.00052 23.5 0.6 16 85-102 52-67 (90)
128 COG2888 Predicted Zn-ribbon RN 29.4 51 0.0011 20.1 1.9 11 85-97 48-58 (61)
129 cd00924 Cyt_c_Oxidase_Vb Cytoc 28.8 26 0.00056 23.8 0.7 20 79-101 72-91 (97)
130 KOG0717 Molecular chaperone (D 28.6 30 0.00066 30.3 1.2 23 88-112 293-315 (508)
131 KOG3214 Uncharacterized Zn rib 27.9 25 0.00055 23.8 0.5 13 87-101 47-59 (109)
132 KOG4434 Molecular chaperone SE 27.8 22 0.00047 30.2 0.2 11 35-45 68-78 (520)
133 KOG2071 mRNA cleavage and poly 27.2 40 0.00088 30.5 1.8 28 22-51 416-443 (579)
134 KOG2051 Nonsense-mediated mRNA 27.1 68 0.0015 31.3 3.2 8 95-102 788-795 (1128)
135 KOG0782 Predicted diacylglycer 26.5 10 0.00022 34.1 -2.0 30 10-41 239-268 (1004)
136 PF10276 zf-CHCC: Zinc-finger 26.1 36 0.00078 18.9 0.8 13 86-100 28-40 (40)
137 TIGR00280 L37a ribosomal prote 25.9 24 0.00051 23.6 0.1 15 85-101 51-65 (91)
138 smart00064 FYVE Protein presen 25.9 47 0.001 20.4 1.5 14 86-101 25-38 (68)
139 COG1997 RPL43A Ribosomal prote 25.8 47 0.001 22.0 1.4 15 85-101 51-65 (89)
140 PF10571 UPF0547: Uncharacteri 25.1 35 0.00075 16.9 0.6 11 88-100 15-25 (26)
141 KOG3362 Predicted BBOX Zn-fing 24.9 35 0.00076 24.8 0.8 38 55-111 114-151 (156)
142 KOG2593 Transcription initiati 24.6 42 0.00092 29.1 1.4 22 20-43 124-145 (436)
143 KOG4377 Zn-finger protein [Gen 24.2 58 0.0013 28.1 2.1 74 24-100 271-360 (480)
144 COG1571 Predicted DNA-binding 23.5 55 0.0012 28.5 1.9 29 61-102 352-380 (421)
145 PHA00626 hypothetical protein 23.1 38 0.00082 20.4 0.6 16 85-102 21-36 (59)
146 PRK03976 rpl37ae 50S ribosomal 23.0 28 0.0006 23.2 -0.0 15 85-101 52-66 (90)
147 PF09845 DUF2072: Zn-ribbon co 22.8 37 0.0008 24.3 0.6 15 87-103 1-15 (131)
148 PF01428 zf-AN1: AN1-like Zinc 22.6 27 0.00059 19.5 -0.1 15 86-102 12-26 (43)
149 KOG3555 Ca2+-binding proteogly 22.3 55 0.0012 27.7 1.6 16 34-49 156-171 (434)
150 KOG1813 Predicted E3 ubiquitin 22.2 93 0.002 25.7 2.8 14 23-38 240-253 (313)
151 KOG2186 Cell growth-regulating 21.6 48 0.001 26.7 1.0 49 2-55 9-57 (276)
152 KOG0782 Predicted diacylglycer 21.6 33 0.00071 31.0 0.1 27 74-102 240-266 (1004)
153 KOG3555 Ca2+-binding proteogly 21.3 60 0.0013 27.4 1.6 15 6-20 158-172 (434)
154 PRK14890 putative Zn-ribbon RN 20.9 81 0.0018 19.2 1.7 11 85-97 46-56 (59)
155 KOG0978 E3 ubiquitin ligase in 20.9 8.5 0.00018 35.5 -3.6 23 84-108 675-697 (698)
156 PF05477 SURF2: Surfeit locus 20.2 89 0.0019 25.1 2.3 9 21-29 22-30 (244)
157 PF14353 CpXC: CpXC protein 20.1 23 0.0005 25.1 -0.9 23 87-111 38-60 (128)
No 1
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.91 E-value=1.3e-25 Score=174.30 Aligned_cols=100 Identities=19% Similarity=0.304 Sum_probs=76.9
Q ss_pred CccccCCChHHHHHHHHHhcCCCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccc
Q 026846 1 MKAVAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYG 80 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~ 80 (232)
+|+|+|..-..|+.|+++|+ -+++|.+ |||+|.+..-|+.|+|+|||+|||.| ..|+|.|--+++|+.||+
T Consensus 166 ~C~K~YvSmpALkMHirTH~--l~c~C~i--CGKaFSRPWLLQGHiRTHTGEKPF~C-----~hC~kAFADRSNLRAHmQ 236 (279)
T KOG2462|consen 166 YCGKVYVSMPALKMHIRTHT--LPCECGI--CGKAFSRPWLLQGHIRTHTGEKPFSC-----PHCGKAFADRSNLRAHMQ 236 (279)
T ss_pred CCCceeeehHHHhhHhhccC--CCccccc--ccccccchHHhhcccccccCCCCccC-----CcccchhcchHHHHHHHH
Confidence 57777777777777777776 5677765 77777777777777777777777777 677777777777877887
Q ss_pred cCCCCCCccCCcccccccccChHHHHHHHHh
Q 026846 81 SASSERPYACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 81 ~H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
+|.+.|+|.|.. |+|+|...+.|.+|...
T Consensus 237 THS~~K~~qC~~--C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 237 THSDVKKHQCPR--CGKSFALKSYLNKHSES 265 (279)
T ss_pred hhcCCccccCcc--hhhHHHHHHHHHHhhhh
Confidence 777777777776 77777777777777654
No 2
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.88 E-value=4.1e-23 Score=160.51 Aligned_cols=104 Identities=28% Similarity=0.476 Sum_probs=95.2
Q ss_pred ccccCCChHHHHHHHHHhcC---CCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccc
Q 026846 2 KAVAFSLDFNLRSHMKTHSQ---ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGV 78 (232)
Q Consensus 2 C~~~f~~~~~L~~H~~~H~~---~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H 78 (232)
|||.+.+.++|.+|.++|.. .+.|.|.+ |+|.|.+...|+.|+|+|+ -|+.| .+|||.|.+.=.|..|
T Consensus 136 Cgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~--C~K~YvSmpALkMHirTH~--l~c~C-----~iCGKaFSRPWLLQGH 206 (279)
T KOG2462|consen 136 CGKSYSTSSNLSRHKQTHRSLDSKKAFSCKY--CGKVYVSMPALKMHIRTHT--LPCEC-----GICGKAFSRPWLLQGH 206 (279)
T ss_pred cccccccccccchhhcccccccccccccCCC--CCceeeehHHHhhHhhccC--CCccc-----ccccccccchHHhhcc
Confidence 99999999999999999964 67899986 9999999999999999997 45555 8999999999999999
Q ss_pred cccCCCCCCccCCcccccccccChHHHHHHHHhhCCCCC
Q 026846 79 YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHM 117 (232)
Q Consensus 79 ~~~H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~~ 117 (232)
+|+|+|+|||.|.. |+|+|+.++||+.||++ |...+
T Consensus 207 iRTHTGEKPF~C~h--C~kAFADRSNLRAHmQT-HS~~K 242 (279)
T KOG2462|consen 207 IRTHTGEKPFSCPH--CGKAFADRSNLRAHMQT-HSDVK 242 (279)
T ss_pred cccccCCCCccCCc--ccchhcchHHHHHHHHh-hcCCc
Confidence 99999999999988 99999999999999999 55544
No 3
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.78 E-value=2.5e-20 Score=162.98 Aligned_cols=49 Identities=33% Similarity=0.594 Sum_probs=47.0
Q ss_pred CccccCCChHHHHHHHHHhcCCCcccCCCCCCCccccchhhHHHHHHHhcC
Q 026846 1 MKAVAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHE 51 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~ 51 (232)
||.|+|...+.|..|+|.|+|+|||+|.+ ||.+|.++.+|+.|...|+.
T Consensus 358 ~CakvfgS~SaLqiHlRSHTGERPfqCnv--CG~~FSTkGNLKvH~~rH~e 406 (958)
T KOG1074|consen 358 FCAKVFGSDSALQIHLRSHTGERPFQCNV--CGNRFSTKGNLKVHFQRHRE 406 (958)
T ss_pred hhHhhcCchhhhhhhhhccCCCCCeeecc--cccccccccceeeeeeeccc
Confidence 79999999999999999999999999987 99999999999999998875
No 4
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.71 E-value=4.4e-18 Score=149.10 Aligned_cols=55 Identities=15% Similarity=0.272 Sum_probs=50.2
Q ss_pred cCCCCCccccCCCCCcccccccCCCCCCccCCcccccccccChHHHHHHHHhhCCCC
Q 026846 60 RYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH 116 (232)
Q Consensus 60 ~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~ 116 (232)
.+|..|++.|.....|..|+++|+|+|||.|.+ |++.|+.+.+|+.||.+|+-..
T Consensus 880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~f--C~~aFttrgnLKvHMgtH~w~q 934 (958)
T KOG1074|consen 880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHF--CEEAFTTRGNLKVHMGTHMWVQ 934 (958)
T ss_pred hhhccchhcccchHHHHHhhhcCCCCCCccchh--hhhhhhhhhhhhhhhccccccC
Confidence 566889999999999999999999999999999 9999999999999999855443
No 5
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.65 E-value=1.6e-17 Score=123.63 Aligned_cols=107 Identities=24% Similarity=0.382 Sum_probs=83.4
Q ss_pred CccccCCChHHHHHHHHHhcCCCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccc
Q 026846 1 MKAVAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYG 80 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~ 80 (232)
+|+|.|..+.-|.+|++.|...|.|-|.+ |||.|...-.|++|+|+|+|.+||+| ..|+|.|.++-.|..|++
T Consensus 122 vCgK~F~lQRmlnrh~kch~~vkr~lct~--cgkgfndtfdlkrh~rthtgvrpykc-----~~c~kaftqrcsleshl~ 194 (267)
T KOG3576|consen 122 VCGKKFGLQRMLNRHLKCHSDVKRHLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKC-----SLCEKAFTQRCSLESHLK 194 (267)
T ss_pred hhhhhhhHHHHHHHHhhhccHHHHHHHhh--ccCcccchhhhhhhhccccCccccch-----hhhhHHHHhhccHHHHHH
Confidence 48888888888888888888888888876 88888888888888888888888887 778888888888888765
Q ss_pred c-CC----------CCCCccCCcccccccccChHHHHHHHHhhCCCC
Q 026846 81 S-AS----------SERPYACPYEGCEKAYIHEYKLKLHLKREHPGH 116 (232)
Q Consensus 81 ~-H~----------~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~ 116 (232)
. |. ..|.|.|.. ||.+-.+...+..|++.+|...
T Consensus 195 kvhgv~~~yaykerr~kl~vced--cg~t~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 195 KVHGVQHQYAYKERRAKLYVCED--CGYTSERPEVYYLHLKLHHPFS 239 (267)
T ss_pred HHcCchHHHHHHHhhhheeeecc--cCCCCCChhHHHHHHHhcCCCC
Confidence 3 32 346788854 8887777777788888777653
No 6
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.62 E-value=6.3e-17 Score=120.48 Aligned_cols=88 Identities=24% Similarity=0.427 Sum_probs=81.5
Q ss_pred CCCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCccccccccc
Q 026846 21 QENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYI 100 (232)
Q Consensus 21 ~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~ 100 (232)
+...|.|.+ |+|+|..+..|.+|++.|...|.|.| +.|||-|...-.|++|+|+|+|.+||+|.. |+|+|+
T Consensus 114 d~d~ftCrv--CgK~F~lQRmlnrh~kch~~vkr~lc-----t~cgkgfndtfdlkrh~rthtgvrpykc~~--c~kaft 184 (267)
T KOG3576|consen 114 DQDSFTCRV--CGKKFGLQRMLNRHLKCHSDVKRHLC-----TFCGKGFNDTFDLKRHTRTHTGVRPYKCSL--CEKAFT 184 (267)
T ss_pred CCCeeeeeh--hhhhhhHHHHHHHHhhhccHHHHHHH-----hhccCcccchhhhhhhhccccCccccchhh--hhHHHH
Confidence 345699997 99999999999999999999888888 899999999999999999999999999988 999999
Q ss_pred ChHHHHHHHHhhCCCCC
Q 026846 101 HEYKLKLHLKREHPGHM 117 (232)
Q Consensus 101 ~~~~l~~H~~~~h~~~~ 117 (232)
++..|..|++..|+...
T Consensus 185 qrcsleshl~kvhgv~~ 201 (267)
T KOG3576|consen 185 QRCSLESHLKKVHGVQH 201 (267)
T ss_pred hhccHHHHHHHHcCchH
Confidence 99999999999887643
No 7
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.53 E-value=3.8e-15 Score=129.14 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=90.2
Q ss_pred CccccCCChHHHHHHHH-Hhc-CCCcccCCCCCCCccccchhhHHHHHHHhcCCCCC-------ccC-CcCCCCCccccC
Q 026846 1 MKAVAFSLDFNLRSHMK-THS-QENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAA-------VEV-PRYATPPERITK 70 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~-~H~-~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~-------~c~-~~~~~~c~~~~~ 70 (232)
||.+.+.+...|+.|++ +|. .+-.|.|.+ |.++|.++..|.+||.+|.....- .|. ..+|+-|+|.|+
T Consensus 215 ycdrgykrltslkeHikyrhekne~nfsC~l--CsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFK 292 (1007)
T KOG3623|consen 215 YCDRGYKRLTSLKEHIKYRHEKNEPNFSCML--CSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFK 292 (1007)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCcchh--hhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhh
Confidence 68888888999999987 453 566799975 999999999999999999632221 122 345599999999
Q ss_pred CCCCcccccccCCCCCCccCCcccccccccChHHHHHHHHh
Q 026846 71 TPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 71 ~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
-+.+|+-|+|+|.|+|||.|.. |+|.|..++.+..||-.
T Consensus 293 fKHHLKEHlRIHSGEKPfeCpn--CkKRFSHSGSySSHmSS 331 (1007)
T KOG3623|consen 293 FKHHLKEHLRIHSGEKPFECPN--CKKRFSHSGSYSSHMSS 331 (1007)
T ss_pred hHHHHHhhheeecCCCCcCCcc--cccccccCCcccccccc
Confidence 9999999999999999999976 99999999999999854
No 8
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.47 E-value=6.8e-15 Score=127.60 Aligned_cols=87 Identities=18% Similarity=0.301 Sum_probs=79.1
Q ss_pred CCCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCccccccccc
Q 026846 21 QENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYI 100 (232)
Q Consensus 21 ~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~ 100 (232)
..-+|.|.. |.|.|...+.|.+|..-|+|++||+| .+|.|.|+.+.+|.-|+|+|.|+|||.|.- |+|.|.
T Consensus 891 e~gmyaCDq--CDK~FqKqSSLaRHKYEHsGqRPyqC-----~iCkKAFKHKHHLtEHkRLHSGEKPfQCdK--ClKRFS 961 (1007)
T KOG3623|consen 891 EDGMYACDQ--CDKAFQKQSSLARHKYEHSGQRPYQC-----IICKKAFKHKHHLTEHKRLHSGEKPFQCDK--CLKRFS 961 (1007)
T ss_pred ccccchHHH--HHHHHHhhHHHHHhhhhhcCCCCccc-----chhhHhhhhhhhhhhhhhhccCCCcchhhh--hhhhcc
Confidence 355799975 99999999999999999999999999 899999999999999999999999999977 999999
Q ss_pred ChHHHHHHHHhhCCCCCC
Q 026846 101 HEYKLKLHLKREHPGHMS 118 (232)
Q Consensus 101 ~~~~l~~H~~~~h~~~~~ 118 (232)
.++....||. |.....
T Consensus 962 HSGSYSQHMN--HRYSYC 977 (1007)
T KOG3623|consen 962 HSGSYSQHMN--HRYSYC 977 (1007)
T ss_pred cccchHhhhc--cchhcc
Confidence 9999999985 666553
No 9
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.37 E-value=3.1e-13 Score=108.71 Aligned_cols=107 Identities=21% Similarity=0.393 Sum_probs=79.8
Q ss_pred CccccCCChHHHHHHHHHhcCCCcccCCCCCCCccccchhhHHHHHHHhc--CCCCCcc---------------------
Q 026846 1 MKAVAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHH--EKNAAVE--------------------- 57 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~--~~~~~~c--------------------- 57 (232)
.|-+.|..++.|+.|+++|+++|...|+ .||.-|..+..|..|++..+ ...+|+|
T Consensus 184 ~Ct~~~~~k~~LreH~r~Hs~eKvvACp--~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv 261 (467)
T KOG3608|consen 184 MCTKHMGNKYRLREHIRTHSNEKVVACP--HCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV 261 (467)
T ss_pred hhhhhhccHHHHHHHHHhcCCCeEEecc--hHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh
Confidence 3778899999999999999999998885 48888888888888887755 3455654
Q ss_pred CCcCCCCCccccCCCCCccccccc-CCCCCCccCCcccccccccChHHHHHHHHh
Q 026846 58 VPRYATPPERITKTPKPPAGVYGS-ASSERPYACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 58 ~~~~~~~c~~~~~~~~~l~~H~~~-H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
..+.|++|.-....++-|.+|++. |...|||+|.- |.+.|.+.+.|.+|..+
T Consensus 262 n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~--Cd~~c~~esdL~kH~~~ 314 (467)
T KOG3608|consen 262 NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDE--CDTRCVRESDLAKHVQV 314 (467)
T ss_pred hcccccccccCCCChHHHHHHHHhhhccCCCccccc--hhhhhccHHHHHHHHHh
Confidence 235667777777777777777764 77777777754 77777666666666654
No 10
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.35 E-value=3.4e-13 Score=108.44 Aligned_cols=115 Identities=19% Similarity=0.310 Sum_probs=77.2
Q ss_pred CccccCCChHHHHHHHHH-hcCCCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCccccc
Q 026846 1 MKAVAFSLDFNLRSHMKT-HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVY 79 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~-H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~ 79 (232)
+|.......+.|..||+. |+..|||+|. .|.++|...+.|.+|+..|. +..|.|-. +.|...|+....+++|+
T Consensus 268 lCdmtc~~~ssL~~H~r~rHs~dkpfKCd--~Cd~~c~~esdL~kH~~~HS-~~~y~C~h---~~C~~s~r~~~q~~~H~ 341 (467)
T KOG3608|consen 268 LCDMTCSSASSLTTHIRYRHSKDKPFKCD--ECDTRCVRESDLAKHVQVHS-KTVYQCEH---PDCHYSVRTYTQMRRHF 341 (467)
T ss_pred ccccCCCChHHHHHHHHhhhccCCCcccc--chhhhhccHHHHHHHHHhcc-ccceecCC---CCCcHHHHHHHHHHHHH
Confidence 356666666777777663 6667777775 47777777777777777665 44455522 44666777777777777
Q ss_pred ccCC-C--CCCccCCcccccccccChHHHHHHHHhhCCCCCCCcccc
Q 026846 80 GSAS-S--ERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAE 123 (232)
Q Consensus 80 ~~H~-~--~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~~~~~~~~ 123 (232)
+-|. | ..+|.|.. |.+.|++..+|..|+++.|....|..-..
T Consensus 342 ~evhEg~np~~Y~CH~--Cdr~ft~G~~L~~HL~kkH~f~~PsGh~R 386 (467)
T KOG3608|consen 342 LEVHEGNNPILYACHC--CDRFFTSGKSLSAHLMKKHGFRLPSGHKR 386 (467)
T ss_pred HHhccCCCCCceeeec--chhhhccchhHHHHHHHhhcccCCCCCCc
Confidence 7543 4 34688877 88888888888888887787766554433
No 11
>PHA00733 hypothetical protein
Probab=99.07 E-value=1.6e-10 Score=82.76 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=54.6
Q ss_pred CCcccCCCCCCCccccchhhHHHH--HHH---hcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCccccc
Q 026846 22 ENYHICPYPDCGKRYAHEYKLKNH--IAS---HHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCE 96 (232)
Q Consensus 22 ~~p~~C~~~~C~~~f~~~~~l~~H--~~~---h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~ 96 (232)
.+++.|.+ |.+.|.....|..| ++. +.+.+||.| ..|++.|.....|..|++.| ..+|.|.. |+
T Consensus 38 ~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C-----~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~--Cg 106 (128)
T PHA00733 38 QKRLIRAV--VKTLIYNPQLLDESSYLYKLLTSKAVSPYVC-----PLCLMPFSSSVSLKQHIRYT--EHSKVCPV--CG 106 (128)
T ss_pred hhhHHHHH--HhhhccChhhhcchHHHHhhcccCCCCCccC-----CCCCCcCCCHHHHHHHHhcC--CcCccCCC--CC
Confidence 44566654 66555555444443 111 223455555 55666666666666666655 35799987 99
Q ss_pred ccccChHHHHHHHHhhCCC
Q 026846 97 KAYIHEYKLKLHLKREHPG 115 (232)
Q Consensus 97 k~f~~~~~l~~H~~~~h~~ 115 (232)
+.|.....|..|+...|+-
T Consensus 107 K~F~~~~sL~~H~~~~h~~ 125 (128)
T PHA00733 107 KEFRNTDSTLDHVCKKHNI 125 (128)
T ss_pred CccCCHHHHHHHHHHhcCc
Confidence 9999999999999988864
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.00 E-value=5.4e-10 Score=97.47 Aligned_cols=98 Identities=17% Similarity=0.257 Sum_probs=73.7
Q ss_pred CccccCCChHHHHHHHHHhcCCCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCC---------
Q 026846 1 MKAVAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKT--------- 71 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~--------- 71 (232)
+|++.|. ...|..|+++|+ +|+.|+ |++.| .+..|..|+++|.+.+|+.| ..|++.|..
T Consensus 458 ~Cgk~f~-~s~LekH~~~~H--kpv~Cp---Cg~~~-~R~~L~~H~~thCp~Kpi~C-----~fC~~~v~~g~~~~d~~d 525 (567)
T PLN03086 458 KCGQAFQ-QGEMEKHMKVFH--EPLQCP---CGVVL-EKEQMVQHQASTCPLRLITC-----RFCGDMVQAGGSAMDVRD 525 (567)
T ss_pred CCCCccc-hHHHHHHHHhcC--CCccCC---CCCCc-chhHHHhhhhccCCCCceeC-----CCCCCccccCccccchhh
Confidence 5888885 577888888874 788884 88655 56888888888888888888 567777741
Q ss_pred -CCCcccccccCCCCCCccCCcccccccccChHHHHHHHHhhCC
Q 026846 72 -PKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHP 114 (232)
Q Consensus 72 -~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~ 114 (232)
...|..|..++ |.+++.|.. ||+.|..+ .|..|+...|.
T Consensus 526 ~~s~Lt~HE~~C-G~rt~~C~~--Cgk~Vrlr-dm~~H~~~~h~ 565 (567)
T PLN03086 526 RLRGMSEHESIC-GSRTAPCDS--CGRSVMLK-EMDIHQIAVHQ 565 (567)
T ss_pred hhhhHHHHHHhc-CCcceEccc--cCCeeeeh-hHHHHHHHhhc
Confidence 23677887775 888888876 88877765 57788777664
No 13
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.88 E-value=1.2e-09 Score=55.69 Aligned_cols=26 Identities=54% Similarity=1.110 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCccccc
Q 026846 11 NLRSHMKTHSQENYHICPYPDCGKRYAH 38 (232)
Q Consensus 11 ~L~~H~~~H~~~~p~~C~~~~C~~~f~~ 38 (232)
+|.+||++|+|++||+|.+ |+++|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~--C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPY--CGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESS--SSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCC--CcCeeCc
Confidence 5899999999999999975 9999974
No 14
>PHA02768 hypothetical protein; Provisional
Probab=98.86 E-value=1.2e-09 Score=65.06 Aligned_cols=43 Identities=19% Similarity=0.429 Sum_probs=36.3
Q ss_pred cccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCcccccccccChH
Q 026846 24 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEY 103 (232)
Q Consensus 24 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~~ 103 (232)
-|.|. .||+.|.+..+|.+|+++|+ ++|+|.. |++.|.+.+
T Consensus 5 ~y~C~--~CGK~Fs~~~~L~~H~r~H~-----------------------------------k~~kc~~--C~k~f~~~s 45 (55)
T PHA02768 5 GYECP--ICGEIYIKRKSMITHLRKHN-----------------------------------TNLKLSN--CKRISLRTG 45 (55)
T ss_pred ccCcc--hhCCeeccHHHHHHHHHhcC-----------------------------------CcccCCc--ccceecccc
Confidence 48996 59999999999999999993 5788865 999998776
Q ss_pred HH
Q 026846 104 KL 105 (232)
Q Consensus 104 ~l 105 (232)
.|
T Consensus 46 ~l 47 (55)
T PHA02768 46 EY 47 (55)
T ss_pred ee
Confidence 65
No 15
>PHA02768 hypothetical protein; Provisional
Probab=98.70 E-value=8.1e-09 Score=61.52 Aligned_cols=39 Identities=8% Similarity=0.137 Sum_probs=35.1
Q ss_pred CccccCCChHHHHHHHHHhcCCCcccCCCCCCCccccchhhHH
Q 026846 1 MKAVAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLK 43 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~H~~~~p~~C~~~~C~~~f~~~~~l~ 43 (232)
.||+.|.+.++|..|+++|+ +||+|. .|++.|.+++.|.
T Consensus 10 ~CGK~Fs~~~~L~~H~r~H~--k~~kc~--~C~k~f~~~s~l~ 48 (55)
T PHA02768 10 ICGEIYIKRKSMITHLRKHN--TNLKLS--NCKRISLRTGEYI 48 (55)
T ss_pred hhCCeeccHHHHHHHHHhcC--CcccCC--cccceecccceeE
Confidence 59999999999999999999 799996 6999999887664
No 16
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.64 E-value=2.9e-09 Score=54.26 Aligned_cols=23 Identities=35% Similarity=0.957 Sum_probs=17.2
Q ss_pred cccccCCCCCCccCCcccccccccC
Q 026846 77 GVYGSASSERPYACPYEGCEKAYIH 101 (232)
Q Consensus 77 ~H~~~H~~~k~~~C~~~~C~k~f~~ 101 (232)
.|+++|+|+|||.|.+ |+++|.+
T Consensus 4 ~H~~~H~~~k~~~C~~--C~k~F~~ 26 (26)
T PF13465_consen 4 RHMRTHTGEKPYKCPY--CGKSFSN 26 (26)
T ss_dssp HHHHHHSSSSSEEESS--SSEEESS
T ss_pred HHhhhcCCCCCCCCCC--CcCeeCc
Confidence 3444446789999988 9999974
No 17
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.61 E-value=2.6e-08 Score=87.09 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=63.4
Q ss_pred CcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCcccccccccC-
Q 026846 23 NYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIH- 101 (232)
Q Consensus 23 ~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~- 101 (232)
+++.|.+ |++.|. ...|..|+++|+ +|+.| + |++.+ .+..|..|+.+|...+|+.|.+ |++.|..
T Consensus 452 ~H~~C~~--Cgk~f~-~s~LekH~~~~H--kpv~C-----p-Cg~~~-~R~~L~~H~~thCp~Kpi~C~f--C~~~v~~g 517 (567)
T PLN03086 452 NHVHCEK--CGQAFQ-QGEMEKHMKVFH--EPLQC-----P-CGVVL-EKEQMVQHQASTCPLRLITCRF--CGDMVQAG 517 (567)
T ss_pred cCccCCC--CCCccc-hHHHHHHHHhcC--CCccC-----C-CCCCc-chhHHHhhhhccCCCCceeCCC--CCCccccC
Confidence 4578975 999996 688999999985 78888 4 88654 6789999999999999999998 9999952
Q ss_pred ---------hHHHHHHHHhh
Q 026846 102 ---------EYKLKLHLKRE 112 (232)
Q Consensus 102 ---------~~~l~~H~~~~ 112 (232)
...|..|....
T Consensus 518 ~~~~d~~d~~s~Lt~HE~~C 537 (567)
T PLN03086 518 GSAMDVRDRLRGMSEHESIC 537 (567)
T ss_pred ccccchhhhhhhHHHHHHhc
Confidence 45799998774
No 18
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.58 E-value=4.8e-08 Score=80.90 Aligned_cols=112 Identities=19% Similarity=0.309 Sum_probs=69.8
Q ss_pred CccccCCChHHHHHHHHHhcCCCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccc-c
Q 026846 1 MKAVAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGV-Y 79 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H-~ 79 (232)
+|...|.....|.+|...-...--|+|. +|+|.|+...||..|+|.|-.+..-..... .-.+.-.....+..- .
T Consensus 272 LCK~kYeD~F~LAQHrC~RIV~vEYrCP--EC~KVFsCPANLASHRRWHKPR~eaa~a~~---~P~k~~~~~rae~~ea~ 346 (500)
T KOG3993|consen 272 LCKEKYEDAFALAQHRCPRIVHVEYRCP--ECDKVFSCPANLASHRRWHKPRPEAAKAGS---PPPKQAVETRAEVQEAE 346 (500)
T ss_pred HHHHhhhhHHHHhhccCCeeEEeeecCC--cccccccCchhhhhhhcccCCchhhhhcCC---CChhhhhhhhhhhhhcc
Confidence 4777788888899997644444569994 799999999999999998853321110000 000000000000000 0
Q ss_pred cc--CCCCCCccCCcccccccccChHHHHHHHHhhCCCCCCC
Q 026846 80 GS--ASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD 119 (232)
Q Consensus 80 ~~--H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~~~~ 119 (232)
|. -....-|.|.. |+|.|.+...|++|+-+||......
T Consensus 347 rsg~dss~gi~~C~~--C~KkFrRqAYLrKHqlthq~~~~~k 386 (500)
T KOG3993|consen 347 RSGDDSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQRAPLAK 386 (500)
T ss_pred ccCCcccCceeecHH--hhhhhHHHHHHHHhHHhhhccccch
Confidence 00 01234799998 9999999999999999988765544
No 19
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.49 E-value=1.1e-07 Score=78.75 Aligned_cols=113 Identities=20% Similarity=0.368 Sum_probs=81.0
Q ss_pred CccccCCChHHHHHHHHHhcC--------CC-------------------------cccCCCCCCCccccchhhHHHHHH
Q 026846 1 MKAVAFSLDFNLRSHMKTHSQ--------EN-------------------------YHICPYPDCGKRYAHEYKLKNHIA 47 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~H~~--------~~-------------------------p~~C~~~~C~~~f~~~~~l~~H~~ 47 (232)
-|+|+|....+|..|.|+|.. .. .|.|.+ |+|.|.++..|+.|+.
T Consensus 300 EC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~--C~KkFrRqAYLrKHql 377 (500)
T KOG3993|consen 300 ECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHT--CGKKFRRQAYLRKHQL 377 (500)
T ss_pred cccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHH--hhhhhHHHHHHHHhHH
Confidence 399999999999999999962 22 289986 9999999999999999
Q ss_pred HhcCCCC--------Cc---------c------------------------CCcCCCCCccccCCCCCcccccccCCCCC
Q 026846 48 SHHEKNA--------AV---------E------------------------VPRYATPPERITKTPKPPAGVYGSASSER 86 (232)
Q Consensus 48 ~h~~~~~--------~~---------c------------------------~~~~~~~c~~~~~~~~~l~~H~~~H~~~k 86 (232)
+|+.... +. + ..-....++-.+..+..--.|.+.-....
T Consensus 378 thq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q 457 (500)
T KOG3993|consen 378 THQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQ 457 (500)
T ss_pred hhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhh
Confidence 9873211 10 0 00111334444444444444554444566
Q ss_pred CccCCcccccccccChHHHHHHHHhhCCCCC
Q 026846 87 PYACPYEGCEKAYIHEYKLKLHLKREHPGHM 117 (232)
Q Consensus 87 ~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~~ 117 (232)
.|.|.+ |.-+|..+.+|.+|+...|..+.
T Consensus 458 ~f~~ky--~~atfyss~~ltrhin~~Hpse~ 486 (500)
T KOG3993|consen 458 GFTCKY--CPATFYSSPGLTRHINKCHPSEL 486 (500)
T ss_pred cccccc--chHhhhcCcchHhHhhhcChHHh
Confidence 799999 99999999999999998887654
No 20
>PHA00616 hypothetical protein
Probab=98.32 E-value=2.9e-07 Score=52.22 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=27.2
Q ss_pred cccCCCCCCCccccchhhHHHHHHHhcCCCCCcc
Q 026846 24 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE 57 (232)
Q Consensus 24 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c 57 (232)
||+|. .||+.|.++..|.+|++.|+|.+++.|
T Consensus 1 pYqC~--~CG~~F~~~s~l~~H~r~~hg~~~~~~ 32 (44)
T PHA00616 1 MYQCL--RCGGIFRKKKEVIEHLLSVHKQNKLTL 32 (44)
T ss_pred CCccc--hhhHHHhhHHHHHHHHHHhcCCCccce
Confidence 68995 699999999999999999987666544
No 21
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=98.31 E-value=3.3e-07 Score=73.36 Aligned_cols=73 Identities=27% Similarity=0.544 Sum_probs=50.5
Q ss_pred CCCcccCCCCCCCccccchhhHHHHHHH-hcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCcccccccc
Q 026846 21 QENYHICPYPDCGKRYAHEYKLKNHIAS-HHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAY 99 (232)
Q Consensus 21 ~~~p~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f 99 (232)
++|||+|+++.|.|+|+.+-.|+-|+.. |...+...- -.+.--..| -...|||.|.+ |+|.|
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~---p~p~~~~~F------------~~~~KPYrCev--C~KRY 408 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHEN---PSPEKMNIF------------SAKDKPYRCEV--CDKRY 408 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCC---CCccccccc------------cccCCceeccc--cchhh
Confidence 3599999999999999999999999874 211111000 001111112 12469999988 99999
Q ss_pred cChHHHHHHHH
Q 026846 100 IHEYKLKLHLK 110 (232)
Q Consensus 100 ~~~~~l~~H~~ 110 (232)
...-.|+.|++
T Consensus 409 KNlNGLKYHr~ 419 (423)
T COG5189 409 KNLNGLKYHRK 419 (423)
T ss_pred ccCccceeccc
Confidence 99999999953
No 22
>PHA00732 hypothetical protein
Probab=98.20 E-value=1.1e-06 Score=57.33 Aligned_cols=24 Identities=33% Similarity=0.676 Sum_probs=21.3
Q ss_pred cccCCCCCCCccccchhhHHHHHHH-h
Q 026846 24 YHICPYPDCGKRYAHEYKLKNHIAS-H 49 (232)
Q Consensus 24 p~~C~~~~C~~~f~~~~~l~~H~~~-h 49 (232)
||.|.. |++.|.+..+|..|++. |
T Consensus 1 py~C~~--Cgk~F~s~s~Lk~H~r~~H 25 (79)
T PHA00732 1 MFKCPI--CGFTTVTLFALKQHARRNH 25 (79)
T ss_pred CccCCC--CCCccCCHHHHHHHhhccc
Confidence 689975 99999999999999985 5
No 23
>PHA00733 hypothetical protein
Probab=98.12 E-value=3.8e-06 Score=60.23 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=57.0
Q ss_pred ccccCCChHHHHHH--HH---HhcCCCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcc
Q 026846 2 KAVAFSLDFNLRSH--MK---THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 76 (232)
Q Consensus 2 C~~~f~~~~~L~~H--~~---~H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~ 76 (232)
|.+.|.....|..| ++ .+.+.+||.|.. |++.|.+...|..|++.|. .+|.| ..|++.|.....|.
T Consensus 46 ~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~--Cgk~Fss~s~L~~H~r~h~--~~~~C-----~~CgK~F~~~~sL~ 116 (128)
T PHA00733 46 VKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPL--CLMPFSSSVSLKQHIRYTE--HSKVC-----PVCGKEFRNTDSTL 116 (128)
T ss_pred HhhhccChhhhcchHHHHhhcccCCCCCccCCC--CCCcCCCHHHHHHHHhcCC--cCccC-----CCCCCccCCHHHHH
Confidence 56666666555444 11 234588999974 9999999999999999763 46666 89999999999999
Q ss_pred cccccCCC
Q 026846 77 GVYGSASS 84 (232)
Q Consensus 77 ~H~~~H~~ 84 (232)
.|++...+
T Consensus 117 ~H~~~~h~ 124 (128)
T PHA00733 117 DHVCKKHN 124 (128)
T ss_pred HHHHHhcC
Confidence 99876543
No 24
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.07 E-value=8.8e-06 Score=49.19 Aligned_cols=53 Identities=34% Similarity=0.646 Sum_probs=40.8
Q ss_pred cccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCcccccccccChH
Q 026846 24 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEY 103 (232)
Q Consensus 24 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~~ 103 (232)
.|.|+| |++ ..+...|..|+...+. ...+.+.|++ |...+. .
T Consensus 2 ~f~CP~--C~~-~~~~~~L~~H~~~~H~-------------------------------~~~~~v~CPi--C~~~~~--~ 43 (54)
T PF05605_consen 2 SFTCPY--CGK-GFSESSLVEHCEDEHR-------------------------------SESKNVVCPI--CSSRVT--D 43 (54)
T ss_pred CcCCCC--CCC-ccCHHHHHHHHHhHCc-------------------------------CCCCCccCCC--chhhhh--h
Confidence 489988 999 4556889999887642 1245799988 998655 4
Q ss_pred HHHHHHHhhCC
Q 026846 104 KLKLHLKREHP 114 (232)
Q Consensus 104 ~l~~H~~~~h~ 114 (232)
+|..|++.+|+
T Consensus 44 ~l~~Hl~~~H~ 54 (54)
T PF05605_consen 44 NLIRHLNSQHR 54 (54)
T ss_pred HHHHHHHHhcC
Confidence 89999998774
No 25
>PHA00616 hypothetical protein
Probab=97.91 E-value=5.8e-06 Score=46.95 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=24.5
Q ss_pred CccCCcccccccccChHHHHHHHHhhCCC
Q 026846 87 PYACPYEGCEKAYIHEYKLKLHLKREHPG 115 (232)
Q Consensus 87 ~~~C~~~~C~k~f~~~~~l~~H~~~~h~~ 115 (232)
||.|.. ||+.|...+.|.+|+++||+.
T Consensus 1 pYqC~~--CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 1 MYQCLR--CGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred CCccch--hhHHHhhHHHHHHHHHHhcCC
Confidence 689977 999999999999999997765
No 26
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.80 E-value=1.4e-05 Score=39.16 Aligned_cols=23 Identities=39% Similarity=0.905 Sum_probs=20.2
Q ss_pred ccCCCCCCCccccchhhHHHHHHHh
Q 026846 25 HICPYPDCGKRYAHEYKLKNHIASH 49 (232)
Q Consensus 25 ~~C~~~~C~~~f~~~~~l~~H~~~h 49 (232)
|+|.+ |++.|.++..|..|++.|
T Consensus 1 y~C~~--C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPI--CGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETT--TTEEESSHHHHHHHHHHH
T ss_pred CCCCC--CCCccCCHHHHHHHHhHC
Confidence 68864 999999999999999875
No 27
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.75 E-value=1.9e-05 Score=38.74 Aligned_cols=22 Identities=41% Similarity=0.987 Sum_probs=20.4
Q ss_pred ccCCcccccccccChHHHHHHHHh
Q 026846 88 YACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
|.|.. |++.|.+...|..|++.
T Consensus 1 y~C~~--C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPI--CGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETT--TTEEESSHHHHHHHHHH
T ss_pred CCCCC--CCCccCCHHHHHHHHhH
Confidence 67977 99999999999999987
No 28
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.73 E-value=2.6e-05 Score=38.42 Aligned_cols=24 Identities=29% Similarity=0.890 Sum_probs=20.3
Q ss_pred ccCCcccccccccChHHHHHHHHhhC
Q 026846 88 YACPYEGCEKAYIHEYKLKLHLKREH 113 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~~l~~H~~~~h 113 (232)
|.|.+ |++.|.+...|..|++++|
T Consensus 1 ~~C~~--C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPI--CGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SS--TS-EESSHHHHHHHHHHHS
T ss_pred CCCcC--CCCcCCcHHHHHHHHHhhC
Confidence 68988 9999999999999999876
No 29
>PHA00732 hypothetical protein
Probab=97.61 E-value=4.1e-05 Score=49.92 Aligned_cols=42 Identities=29% Similarity=0.581 Sum_probs=35.0
Q ss_pred CccccCCChHHHHHHHHH-hcCCCcccCCCCCCCccccchhhHHHHHHHhc
Q 026846 1 MKAVAFSLDFNLRSHMKT-HSQENYHICPYPDCGKRYAHEYKLKNHIASHH 50 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~-H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~ 50 (232)
+|++.|.....|..|++. |. ++.|.. |+++|. .|..|++++.
T Consensus 6 ~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~--CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 6 ICGFTTVTLFALKQHARRNHT---LTKCPV--CNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CCCCccCCHHHHHHHhhcccC---CCccCC--CCCEeC---ChhhhhcccC
Confidence 599999999999999985 65 468974 999998 4888887653
No 30
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.58 E-value=3.9e-05 Score=39.20 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=23.2
Q ss_pred CccCCcccccccccChHHHHHHHHhhCC
Q 026846 87 PYACPYEGCEKAYIHEYKLKLHLKREHP 114 (232)
Q Consensus 87 ~~~C~~~~C~k~f~~~~~l~~H~~~~h~ 114 (232)
||.|.. |++.|.....|..|++.|+.
T Consensus 1 ~~~C~~--C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDE--CGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETT--TTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCc--cCCccCChhHHHHHhHHhcC
Confidence 689987 99999999999999988654
No 31
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=97.49 E-value=2.7e-05 Score=66.97 Aligned_cols=115 Identities=29% Similarity=0.381 Sum_probs=91.4
Q ss_pred CccccCCChHHHHHHHH--HhcCC--CcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCC-----------------
Q 026846 1 MKAVAFSLDFNLRSHMK--THSQE--NYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVP----------------- 59 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~--~H~~~--~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~----------------- 59 (232)
.|...|.....|.+|.+ .|+++ +|+.|.+..|++.|.+...+.+|..+|++..++.+..
T Consensus 294 ~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (467)
T COG5048 294 QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQ 373 (467)
T ss_pred cccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCCCCcc
Confidence 47889999999999999 89999 9999984459999999999999999999877664311
Q ss_pred ---------------cCCCCCccccCCCCCcccccccCCCCCCccCCcccccccccChHHHHHHHHhhCCC
Q 026846 60 ---------------RYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 115 (232)
Q Consensus 60 ---------------~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~ 115 (232)
.....|...+.....+..|...|...+++.|....|.+.|.....+..|++.+...
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (467)
T COG5048 374 SLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNH 444 (467)
T ss_pred chhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccC
Confidence 11133556677777788888888888876666667999999999999998774443
No 32
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.43 E-value=0.00011 Score=36.04 Aligned_cols=24 Identities=38% Similarity=0.987 Sum_probs=19.3
Q ss_pred ccCCCCCCCccccchhhHHHHHHHhc
Q 026846 25 HICPYPDCGKRYAHEYKLKNHIASHH 50 (232)
Q Consensus 25 ~~C~~~~C~~~f~~~~~l~~H~~~h~ 50 (232)
|.|.+ |++.|.+...|..|++.|+
T Consensus 1 ~~C~~--C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPI--CGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SS--TS-EESSHHHHHHHHHHHS
T ss_pred CCCcC--CCCcCCcHHHHHHHHHhhC
Confidence 68976 9999999999999999873
No 33
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.43 E-value=9.3e-05 Score=50.44 Aligned_cols=73 Identities=18% Similarity=0.491 Sum_probs=21.8
Q ss_pred cCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCcccccccccChHHH
Q 026846 26 ICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKL 105 (232)
Q Consensus 26 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~~~l 105 (232)
.|.+ |+..|.....|..|+...++...- ....+.....+..+++.. -...+.|.+ |++.|.....|
T Consensus 1 ~C~~--C~~~f~~~~~l~~H~~~~H~~~~~---------~~~~l~~~~~~~~~~~~~-~~~~~~C~~--C~~~f~s~~~l 66 (100)
T PF12756_consen 1 QCLF--CDESFSSVDDLLQHMKKKHGFDIP---------DQKYLVDPNRLLNYLRKK-VKESFRCPY--CNKTFRSREAL 66 (100)
T ss_dssp ------------------------------------------------------------SSEEBSS--SS-EESSHHHH
T ss_pred Cccc--cccccccccccccccccccccccc---------cccccccccccccccccc-cCCCCCCCc--cCCCCcCHHHH
Confidence 3665 888888888888888765432110 000111111111222111 123799988 99999999999
Q ss_pred HHHHHhh
Q 026846 106 KLHLKRE 112 (232)
Q Consensus 106 ~~H~~~~ 112 (232)
..|++.+
T Consensus 67 ~~Hm~~~ 73 (100)
T PF12756_consen 67 QEHMRSK 73 (100)
T ss_dssp HHHHHHT
T ss_pred HHHHcCc
Confidence 9999975
No 34
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=97.39 E-value=0.00071 Score=53.15 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=15.1
Q ss_pred hcCCCcccCCCCCCCccccchhhHHHHHHH
Q 026846 19 HSQENYHICPYPDCGKRYAHEYKLKNHIAS 48 (232)
Q Consensus 19 H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~ 48 (232)
.+|-|.|+|.| |.. |.-...--.|+..
T Consensus 137 ~hGGrif~Csf--C~~-flCEDDQFEHQAs 163 (314)
T PF06524_consen 137 DHGGRIFKCSF--CDN-FLCEDDQFEHQAS 163 (314)
T ss_pred cCCCeEEEeec--CCC-eeeccchhhhhhh
Confidence 34667788876 764 3334444445544
No 35
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.18 E-value=0.0008 Score=40.54 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=34.9
Q ss_pred CccccCCChHHHHHHHHH-hcCC-CcccCCCCCCCccccchhhHHHHHHHhc
Q 026846 1 MKAVAFSLDFNLRSHMKT-HSQE-NYHICPYPDCGKRYAHEYKLKNHIASHH 50 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~-H~~~-~p~~C~~~~C~~~f~~~~~l~~H~~~h~ 50 (232)
||++. .....|..|... |..+ +.+.|++ |...+. .+|.+|++.++
T Consensus 7 ~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 7 YCGKG-FSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CCCCc-cCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHhc
Confidence 79994 556789999774 7654 5799976 998755 49999998864
No 36
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.13 E-value=0.00025 Score=36.10 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.4
Q ss_pred cccCCCCCCCccccchhhHHHHHHHhc
Q 026846 24 YHICPYPDCGKRYAHEYKLKNHIASHH 50 (232)
Q Consensus 24 p~~C~~~~C~~~f~~~~~l~~H~~~h~ 50 (232)
||.|.. |++.|.+...|..|++.|.
T Consensus 1 ~~~C~~--C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDE--CGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETT--TTEEESSHHHHHHHHCTTT
T ss_pred CCCCCc--cCCccCChhHHHHHhHHhc
Confidence 689975 9999999999999999874
No 37
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=97.03 E-value=0.00063 Score=39.57 Aligned_cols=40 Identities=25% Similarity=0.476 Sum_probs=24.6
Q ss_pred HHHHHH-hcCCCcccCCCCCCCccccchhhHHHHHHHhcCCCC
Q 026846 13 RSHMKT-HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNA 54 (232)
Q Consensus 13 ~~H~~~-H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~ 54 (232)
..+.+. +..+.|..|++ |+..+.+..+|++|+.++++.||
T Consensus 12 ~~~~k~~~~S~~PatCP~--C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 12 TKKPKSKSQSEQPATCPI--CGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp ----CCCCTTS--EE-TT--T--EESSHHHHHHHHHHHTTTS-
T ss_pred hhHHHHhhccCCCCCCCc--chhhccchhhHHHHHHHHhcccC
Confidence 344443 34678999975 99999999999999999887665
No 38
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.80 E-value=0.0018 Score=37.72 Aligned_cols=31 Identities=32% Similarity=0.585 Sum_probs=22.6
Q ss_pred CCCCCccCCcccccccccChHHHHHHHHhhCCC
Q 026846 83 SSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 115 (232)
Q Consensus 83 ~~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~ 115 (232)
..+.|-.|+. |+..+.+..+|++|+..+|..
T Consensus 20 ~S~~PatCP~--C~a~~~~srnLrRHle~~H~~ 50 (54)
T PF09237_consen 20 QSEQPATCPI--CGAVIRQSRNLRRHLEIRHFK 50 (54)
T ss_dssp TTS--EE-TT--T--EESSHHHHHHHHHHHTTT
T ss_pred ccCCCCCCCc--chhhccchhhHHHHHHHHhcc
Confidence 3578999987 999999999999999988864
No 39
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.71 E-value=0.0015 Score=32.33 Aligned_cols=24 Identities=38% Similarity=0.794 Sum_probs=20.9
Q ss_pred ccCCCCCCCccccchhhHHHHHHHhc
Q 026846 25 HICPYPDCGKRYAHEYKLKNHIASHH 50 (232)
Q Consensus 25 ~~C~~~~C~~~f~~~~~l~~H~~~h~ 50 (232)
|.|.+ |++.|.....|..|++.|.
T Consensus 1 ~~C~~--C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPE--CGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCC--CcchhCCHHHHHHHHHHhc
Confidence 57865 9999999999999999774
No 40
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.65 E-value=0.0013 Score=44.67 Aligned_cols=47 Identities=32% Similarity=0.548 Sum_probs=19.2
Q ss_pred CccccCCChHHHHHHHHH-hcC----------------------CCcccCCCCCCCccccchhhHHHHHHHh
Q 026846 1 MKAVAFSLDFNLRSHMKT-HSQ----------------------ENYHICPYPDCGKRYAHEYKLKNHIASH 49 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~-H~~----------------------~~p~~C~~~~C~~~f~~~~~l~~H~~~h 49 (232)
+|+..|.....|..||.. |.- ...+.|.+ |++.|.+...|..||+.+
T Consensus 4 ~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~--C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 4 FCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPY--CNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ---------------------------------------------SSEEBSS--SS-EESSHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCCCCCCc--cCCCCcCHHHHHHHHcCc
Confidence 589999999999999864 431 12478876 998898888899998875
No 41
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.58 E-value=0.0019 Score=31.96 Aligned_cols=22 Identities=36% Similarity=0.833 Sum_probs=19.8
Q ss_pred ccCCcccccccccChHHHHHHHHh
Q 026846 88 YACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
|.|.. |+++|.....|..|++.
T Consensus 1 ~~C~~--C~~~f~~~~~l~~H~~~ 22 (26)
T smart00355 1 YRCPE--CGKVFKSKSALKEHMRT 22 (26)
T ss_pred CCCCC--CcchhCCHHHHHHHHHH
Confidence 57877 99999999999999985
No 42
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=96.56 E-value=0.0054 Score=51.37 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=71.7
Q ss_pred CccccCCChHHHHHHHHHhcCC------------CcccCCCCCCCccccchhhHHHHHHHhcCCCCC--------ccCCc
Q 026846 1 MKAVAFSLDFNLRSHMKTHSQE------------NYHICPYPDCGKRYAHEYKLKNHIASHHEKNAA--------VEVPR 60 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~H~~~------------~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~--------~c~~~ 60 (232)
+|+..+..+..+.+|..+|.-. ..|-|.+..|.| +.++...|-..|+. +++ -|..
T Consensus 278 ~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~-~~n~GfrrthfhC~r- 352 (480)
T KOG4377|consen 278 YCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTD-KRNNGFRRTHFHCQR- 352 (480)
T ss_pred cccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccc-cccCceecceeEEec-
Confidence 5887777799999999998632 236888888988 55667777777743 333 2322
Q ss_pred CCCCCccccCCCCCcccccccCCCC------------------------CCccCCcccccccccChHHHHHHHHhhC
Q 026846 61 YATPPERITKTPKPPAGVYGSASSE------------------------RPYACPYEGCEKAYIHEYKLKLHLKREH 113 (232)
Q Consensus 61 ~~~~c~~~~~~~~~l~~H~~~H~~~------------------------k~~~C~~~~C~k~f~~~~~l~~H~~~~h 113 (232)
..|.-.|+...+-..|++-+.++ .-|.|...||+.+|...++|..|.|.|-
T Consensus 353 --~gCTdtfK~~khk~yh~kdda~~~dGfkkf~k~e~cay~gCkys~~cnhfhc~r~Gc~~tl~s~sqm~shkrkhe 427 (480)
T KOG4377|consen 353 --IGCTDTFKDSKHKPYHYKDDAGEIDGFKKFFKDENCAYTGCKYSGICNHFHCDRLGCEATLYSVSQMASHKRKHE 427 (480)
T ss_pred --cCCccccccccccccccCcchhhhhhhhhhhccccCCccCcccccceeeeeecccCCceEEEehhhhhhhhhhhh
Confidence 23556666555555555544322 1355888899999999999999987743
No 43
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.52 E-value=0.0017 Score=31.92 Aligned_cols=24 Identities=50% Similarity=0.948 Sum_probs=19.1
Q ss_pred ccCCcccccccccChHHHHHHHHhhCC
Q 026846 88 YACPYEGCEKAYIHEYKLKLHLKREHP 114 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~~l~~H~~~~h~ 114 (232)
|+|.. |+.+.. ...|.+|++++|+
T Consensus 1 y~C~~--C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPH--CSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SS--SS-EES-HHHHHHHHHHHHS
T ss_pred CCCCC--CCCcCC-HHHHHHHHHhhCc
Confidence 68987 998888 8899999999874
No 44
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.0011 Score=50.21 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=68.7
Q ss_pred CCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCccccccc-C---------CCCCCccCC
Q 026846 22 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGS-A---------SSERPYACP 91 (232)
Q Consensus 22 ~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~-H---------~~~k~~~C~ 91 (232)
.+.|.|++..|...|........|-.+-++ ..|..|.+.|.+...|-.|+.- | .|.-.|.|-
T Consensus 77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h~--------~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~Cl 148 (253)
T KOG4173|consen 77 VPAFACQVAGCCQVFDALDDYEHHYHTLHG--------NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCL 148 (253)
T ss_pred cccccccccchHHHHhhhhhHHHhhhhccc--------chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 356889999999999988877777544332 2347899999999999998652 3 467789999
Q ss_pred cccccccccChHHHHHHHHhhCCC
Q 026846 92 YEGCEKAYIHEYKLKLHLKREHPG 115 (232)
Q Consensus 92 ~~~C~k~f~~~~~l~~H~~~~h~~ 115 (232)
++||+-.|.+....+.|+-..|..
T Consensus 149 vEgCt~KFkT~r~RkdH~I~~Hk~ 172 (253)
T KOG4173|consen 149 VEGCTEKFKTSRDRKDHMIRMHKY 172 (253)
T ss_pred HHhhhhhhhhhhhhhhHHHHhccC
Confidence 999999999999999998877764
No 45
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=95.92 E-value=0.0088 Score=47.18 Aligned_cols=18 Identities=28% Similarity=0.637 Sum_probs=8.6
Q ss_pred CCccCCcccccccccChHHH
Q 026846 86 RPYACPYEGCEKAYIHEYKL 105 (232)
Q Consensus 86 k~~~C~~~~C~k~f~~~~~l 105 (232)
+++.|+- ||.-......|
T Consensus 208 k~~PCPK--Cg~et~eTkdL 225 (314)
T PF06524_consen 208 KPIPCPK--CGYETQETKDL 225 (314)
T ss_pred CCCCCCC--CCCcccccccc
Confidence 4555544 55444443333
No 46
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.92 E-value=0.0073 Score=29.62 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=17.9
Q ss_pred ccCCCCCCCccccchhhHHHHHHHhc
Q 026846 25 HICPYPDCGKRYAHEYKLKNHIASHH 50 (232)
Q Consensus 25 ~~C~~~~C~~~f~~~~~l~~H~~~h~ 50 (232)
|+|.+ |..... +..|.+|++.|+
T Consensus 1 y~C~~--C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPH--CSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SS--SS-EES-HHHHHHHHHHHH
T ss_pred CCCCC--CCCcCC-HHHHHHHHHhhC
Confidence 68975 999988 889999999875
No 47
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.84 E-value=0.0056 Score=30.32 Aligned_cols=23 Identities=30% Similarity=0.738 Sum_probs=20.2
Q ss_pred ccCCCCCCCccccchhhHHHHHHHh
Q 026846 25 HICPYPDCGKRYAHEYKLKNHIASH 49 (232)
Q Consensus 25 ~~C~~~~C~~~f~~~~~l~~H~~~h 49 (232)
|.|.+ |++.|.+...|..|++.+
T Consensus 1 ~~C~~--C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDI--CNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETT--TTEEESSHHHHHHHHTTH
T ss_pred CCCCC--CCCCcCCHHHHHHHHCcC
Confidence 67876 999999999999999875
No 48
>PRK04860 hypothetical protein; Provisional
Probab=95.73 E-value=0.0059 Score=45.45 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=23.2
Q ss_pred CCCCcccccccCCCCCCccCCcccccccccCh
Q 026846 71 TPKPPAGVYGSASSERPYACPYEGCEKAYIHE 102 (232)
Q Consensus 71 ~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~ 102 (232)
....+..|.++|+++++|.|.. |+..|...
T Consensus 127 ~~~~~rrH~ri~~g~~~YrC~~--C~~~l~~~ 156 (160)
T PRK04860 127 HQLTVRRHNRVVRGEAVYRCRR--CGETLVFK 156 (160)
T ss_pred eeCHHHHHHHHhcCCccEECCC--CCceeEEe
Confidence 4455667777778899999987 99988754
No 49
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.65 E-value=0.0075 Score=29.83 Aligned_cols=22 Identities=32% Similarity=0.798 Sum_probs=19.9
Q ss_pred ccCCcccccccccChHHHHHHHHh
Q 026846 88 YACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
|.|.+ |++.|.....|..|++.
T Consensus 1 ~~C~~--C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDI--CNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETT--TTEEESSHHHHHHHHTT
T ss_pred CCCCC--CCCCcCCHHHHHHHHCc
Confidence 67887 99999999999999875
No 50
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=95.01 E-value=0.016 Score=49.76 Aligned_cols=77 Identities=8% Similarity=-0.012 Sum_probs=60.9
Q ss_pred CcccCCCCCCCccccchhhHHHHHH--HhcCC--CCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCccccccc
Q 026846 23 NYHICPYPDCGKRYAHEYKLKNHIA--SHHEK--NAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKA 98 (232)
Q Consensus 23 ~p~~C~~~~C~~~f~~~~~l~~H~~--~h~~~--~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~ 98 (232)
.++.|. .|...|.....|.+|.+ .|.+. +|+.|... .|++.|.....+..|..+|.+.+++.|....|.+.
T Consensus 288 ~~~~~~--~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (467)
T COG5048 288 LPIKSK--QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYS---LCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSK 362 (467)
T ss_pred cCCCCc--cccCCccccccccccccccccccccCCceeeecc---CCCccccccccccCCcccccCCCccccccccCccc
Confidence 467775 48899999999999998 78888 88888433 78888888888888988888888888877667666
Q ss_pred ccChHH
Q 026846 99 YIHEYK 104 (232)
Q Consensus 99 f~~~~~ 104 (232)
+.....
T Consensus 363 ~~~~~~ 368 (467)
T COG5048 363 FSPLLN 368 (467)
T ss_pred cccccC
Confidence 665544
No 51
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=94.84 E-value=0.0099 Score=56.81 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=60.0
Q ss_pred ccCCChHHHHHHHH-HhcCCCcccCCCCCCCccccchhhHHHHHHHhcCC--CCCccCCcCCCCCccccCCCCCcccccc
Q 026846 4 VAFSLDFNLRSHMK-THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK--NAAVEVPRYATPPERITKTPKPPAGVYG 80 (232)
Q Consensus 4 ~~f~~~~~L~~H~~-~H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~c~~~~~~~c~~~~~~~~~l~~H~~ 80 (232)
..|.++..|.-|+. +|+-.+-|+|+ .|++.|.....|-.|||.-+.. -.|+. +...|.+
T Consensus 444 ~~~~s~r~~~~~t~~L~S~~kt~~cp--kc~~~yk~a~~L~vhmRskhp~~~~~~c~----------------~gq~~~~ 505 (1406)
T KOG1146|consen 444 PLLESKRSLEGQTVVLHSFFKTLKCP--KCNWHYKLAQTLGVHMRSKHPESQSAYCK----------------AGQNHPR 505 (1406)
T ss_pred hhhhhhcccccceeeeecccccccCC--ccchhhhhHHHhhhcccccccccchhHhH----------------hcccccc
Confidence 34444555555554 47777899996 6999999999999999984321 11111 0111111
Q ss_pred c------CCCCCCccCCcccccccccChHHHHHHHHh
Q 026846 81 S------ASSERPYACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 81 ~------H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
. -.+.+||.|.. |..+|....+|..|++.
T Consensus 506 ~arg~~~~~~~~p~~C~~--C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 506 LARGEVYRCPGKPYPCRA--CNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred ccccccccCCCCccccee--eeeeeecchHHHHHHHH
Confidence 1 12568999988 99999999999999875
No 52
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.83 E-value=0.01 Score=30.07 Aligned_cols=22 Identities=36% Similarity=0.771 Sum_probs=19.5
Q ss_pred ccCCcccccccccChHHHHHHHHh
Q 026846 88 YACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
|.|.. |++.|.....|..|+++
T Consensus 2 ~~C~~--C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDA--CDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred CCccc--CCCCcCCHHHHHHHHcc
Confidence 67877 99999999999999875
No 53
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=94.81 E-value=0.052 Score=37.60 Aligned_cols=17 Identities=29% Similarity=0.815 Sum_probs=11.5
Q ss_pred CCCCccCCcccccccccCh
Q 026846 84 SERPYACPYEGCEKAYIHE 102 (232)
Q Consensus 84 ~~k~~~C~~~~C~k~f~~~ 102 (232)
+..|-.|++ ||..|.-.
T Consensus 23 nk~PivCP~--CG~~~~~~ 39 (108)
T PF09538_consen 23 NKDPIVCPK--CGTEFPPE 39 (108)
T ss_pred CCCCccCCC--CCCccCcc
Confidence 346777877 88777654
No 54
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=94.15 E-value=0.035 Score=45.19 Aligned_cols=30 Identities=43% Similarity=0.961 Sum_probs=26.4
Q ss_pred CCCCccCCcccccccccChHHHHHHHHhhC
Q 026846 84 SERPYACPYEGCEKAYIHEYKLKLHLKREH 113 (232)
Q Consensus 84 ~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h 113 (232)
++|||+|++++|.|+|...-.|+.|+.--|
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH 375 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGH 375 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccc
Confidence 469999999999999999999999976434
No 55
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.15 E-value=0.016 Score=29.33 Aligned_cols=23 Identities=35% Similarity=0.714 Sum_probs=19.2
Q ss_pred ccCCCCCCCccccchhhHHHHHHHh
Q 026846 25 HICPYPDCGKRYAHEYKLKNHIASH 49 (232)
Q Consensus 25 ~~C~~~~C~~~f~~~~~l~~H~~~h 49 (232)
|.|.+ |++.|.+...|..|+++.
T Consensus 2 ~~C~~--C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 2 FYCDA--CDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp CBBTT--TTBBBSSHHHHHCCTTSH
T ss_pred CCccc--CCCCcCCHHHHHHHHccC
Confidence 67875 999999999999988753
No 56
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.29 E-value=0.59 Score=38.75 Aligned_cols=95 Identities=20% Similarity=0.349 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHh---cCCCcc-cCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccc-------cCCCCCcc
Q 026846 8 LDFNLRSHMKTH---SQENYH-ICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERI-------TKTPKPPA 76 (232)
Q Consensus 8 ~~~~L~~H~~~H---~~~~p~-~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~-------~~~~~~l~ 76 (232)
++..|+.|...- .|-+-+ .|.+ |...|..-..|.+|+|..+.. |.+|.++ |+.-..|.
T Consensus 200 ~~~~Lr~H~~~G~~e~GFKGHP~C~F--C~~~FYdDDEL~~HcR~~HE~---------ChICD~v~p~~~QYFK~Y~~Le 268 (493)
T COG5236 200 RSSTLRDHKNGGLEEEGFKGHPLCIF--CKIYFYDDDELRRHCRLRHEA---------CHICDMVGPIRYQYFKSYEDLE 268 (493)
T ss_pred ecccccccccCCccccCcCCCchhhh--ccceecChHHHHHHHHhhhhh---------hhhhhccCccchhhhhCHHHHH
Confidence 456677776542 233333 4876 999999999999999986532 2344443 33333344
Q ss_pred cccccCCCCCCccCCccccc----ccccChHHHHHHHHhhCCCCC
Q 026846 77 GVYGSASSERPYACPYEGCE----KAYIHEYKLKLHLKREHPGHM 117 (232)
Q Consensus 77 ~H~~~H~~~k~~~C~~~~C~----k~f~~~~~l~~H~~~~h~~~~ 117 (232)
.|.+ .--|.|.+-.|- .+|.....|..|+...|....
T Consensus 269 ~HF~----~~hy~ct~qtc~~~k~~vf~~~~el~~h~~~~h~~~~ 309 (493)
T COG5236 269 AHFR----NAHYCCTFQTCRVGKCYVFPYHTELLEHLTRFHKVNA 309 (493)
T ss_pred HHhh----cCceEEEEEEEecCcEEEeccHHHHHHHHHHHhhccc
Confidence 4433 223666654452 468899999999988776544
No 57
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=93.12 E-value=0.049 Score=32.31 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=28.4
Q ss_pred cCCCCCCccCCcccccccccChHHHHHHHHhhCCC
Q 026846 81 SASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 115 (232)
Q Consensus 81 ~H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~ 115 (232)
.-.|+-.+.|+. ||..|..+....+|+...|.-
T Consensus 11 ~RDGE~~lrCPR--C~~~FR~~K~Y~RHVNKaH~~ 43 (65)
T COG4049 11 DRDGEEFLRCPR--CGMVFRRRKDYIRHVNKAHGW 43 (65)
T ss_pred ccCCceeeeCCc--hhHHHHHhHHHHHHhhHHhhh
Confidence 346788999988 999999999999999887754
No 58
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=93.04 E-value=0.09 Score=26.09 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=16.9
Q ss_pred ccCCcccccccccChHHHHHHHHh
Q 026846 88 YACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
..|.. ||+.| ....|.+|++.
T Consensus 3 ~~C~~--CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPI--CGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCC--CCCEE-CHHHHHHHHHh
Confidence 46877 99999 56789999764
No 59
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.82 E-value=0.13 Score=27.52 Aligned_cols=23 Identities=26% Similarity=0.658 Sum_probs=20.4
Q ss_pred CccCCcccccccccChHHHHHHHHh
Q 026846 87 PYACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 87 ~~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
+|.|.+ |++.|.....+..|++.
T Consensus 3 ~~~C~~--C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKL--CNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccc--cCCccCCHHHHHHHHCh
Confidence 588988 99999999999999875
No 60
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.30 E-value=0.17 Score=27.05 Aligned_cols=24 Identities=17% Similarity=0.519 Sum_probs=20.9
Q ss_pred cccCCCCCCCccccchhhHHHHHHHh
Q 026846 24 YHICPYPDCGKRYAHEYKLKNHIASH 49 (232)
Q Consensus 24 p~~C~~~~C~~~f~~~~~l~~H~~~h 49 (232)
+|.|.+ |++.|.....+..|++..
T Consensus 3 ~~~C~~--C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 3 GFYCKL--CNVTFTDEISVEAHLKGK 26 (35)
T ss_pred CeEccc--cCCccCCHHHHHHHHChH
Confidence 588986 999999999999998764
No 61
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=91.16 E-value=0.057 Score=44.53 Aligned_cols=72 Identities=32% Similarity=0.562 Sum_probs=46.0
Q ss_pred CCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCcccccccccC
Q 026846 22 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIH 101 (232)
Q Consensus 22 ~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~ 101 (232)
.+||+|.+|+|.+.+.....|+.|...-+ |..+........-|.---...|||.|.+ |.+.+.-
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h--------------~s~i~~~s~~~~ph~~~~~~nk~~r~~i--~~~~~k~ 410 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGH--------------CSPITTPTPAPIPHQGFVVENKPYRCEV--CSKRYKN 410 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCc--------------CCCCCCCCCCCCCcceeeeccCcccChh--hhhhhcc
Confidence 57899999999999999888887754311 1111111111111111112368999988 9999887
Q ss_pred hHHHHHHH
Q 026846 102 EYKLKLHL 109 (232)
Q Consensus 102 ~~~l~~H~ 109 (232)
...|+.|+
T Consensus 411 ~~~l~~~~ 418 (442)
T KOG4124|consen 411 LNGLKYHR 418 (442)
T ss_pred CCCCCcee
Confidence 77777774
No 62
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=90.95 E-value=0.34 Score=46.91 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=58.4
Q ss_pred CCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCcccccccccC
Q 026846 22 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIH 101 (232)
Q Consensus 22 ~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~ 101 (232)
.++|.|.. |...|.....|..|.+. |-+.++....+.-|+..|..-++| |.. |...|..
T Consensus 1282 ~~~~~~~~--~~~~~~~~~~l~~~~~k----------------~~~~~~~~~~~~~~~l~~~d~~~~-c~~--c~~~~~~ 1340 (1406)
T KOG1146|consen 1282 THRYLCRQ--CKMAFDGEAPLTAHQRK----------------FCFAGRGSGGSMPPPLRVPDCTYH-CLA--CEVLLSG 1340 (1406)
T ss_pred chhHHHHH--HHhhhcchhHHHHHHHH----------------HHhccCccccCCCCcccCcccccc-chH--HHhhcch
Confidence 45789975 99999999999998832 224455566666677777777888 988 9999999
Q ss_pred hHHHHHHHHhhCCCCC
Q 026846 102 EYKLKLHLKREHPGHM 117 (232)
Q Consensus 102 ~~~l~~H~~~~h~~~~ 117 (232)
...|..|+++.+...+
T Consensus 1341 ~~alqihm~~~~~~~k 1356 (1406)
T KOG1146|consen 1341 REALQIHMRSSAHRRK 1356 (1406)
T ss_pred hHHHHHHHHHhhhccc
Confidence 9999999998665544
No 63
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=89.27 E-value=0.11 Score=40.74 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=31.2
Q ss_pred CccccCCChHHHHHHHHHhcCCCcccCCCCCCCccccchhhHHHHH
Q 026846 1 MKAVAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHI 46 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~H~~~~p~~C~~~~C~~~f~~~~~l~~H~ 46 (232)
||++.|.....|.+|++. |-|+|.+ |.|.+.+-..|..|.
T Consensus 15 ycnrefddekiliqhqka----khfkchi--chkkl~sgpglsihc 54 (341)
T KOG2893|consen 15 YCNREFDDEKILIQHQKA----KHFKCHI--CHKKLFSGPGLSIHC 54 (341)
T ss_pred ecccccchhhhhhhhhhh----ccceeee--ehhhhccCCCceeeh
Confidence 788888888888888774 3488886 888877777777763
No 64
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=88.77 E-value=0.95 Score=32.04 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=14.3
Q ss_pred CCCCccCCcccccccccChHHH
Q 026846 84 SERPYACPYEGCEKAYIHEYKL 105 (232)
Q Consensus 84 ~~k~~~C~~~~C~k~f~~~~~l 105 (232)
+..|-.|++ ||..|.....+
T Consensus 23 nk~p~vcP~--cg~~~~~~~~~ 42 (129)
T TIGR02300 23 NRRPAVSPY--TGEQFPPEEAL 42 (129)
T ss_pred CCCCccCCC--cCCccCcchhh
Confidence 457888988 99888665333
No 65
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=88.48 E-value=0.13 Score=40.26 Aligned_cols=51 Identities=24% Similarity=0.539 Sum_probs=35.4
Q ss_pred CCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCcccccccccC
Q 026846 22 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIH 101 (232)
Q Consensus 22 ~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~ 101 (232)
.||| |-| |++-|....-|..|++. |-|+|.+ |.|...+
T Consensus 9 ~kpw-cwy--cnrefddekiliqhqka-------------------------------------khfkchi--chkkl~s 46 (341)
T KOG2893|consen 9 DKPW-CWY--CNREFDDEKILIQHQKA-------------------------------------KHFKCHI--CHKKLFS 46 (341)
T ss_pred CCce-eee--cccccchhhhhhhhhhh-------------------------------------ccceeee--ehhhhcc
Confidence 4666 445 99999999999988874 3377877 8776666
Q ss_pred hHHHHHHHHhhCC
Q 026846 102 EYKLKLHLKREHP 114 (232)
Q Consensus 102 ~~~l~~H~~~~h~ 114 (232)
...|..|--.+|.
T Consensus 47 gpglsihcmqvhk 59 (341)
T KOG2893|consen 47 GPGLSIHCMQVHK 59 (341)
T ss_pred CCCceeehhhhhh
Confidence 6666666444443
No 66
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=0.88 Score=41.43 Aligned_cols=93 Identities=18% Similarity=0.339 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHhc-CCCc----ccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcC-CCCCccccCCCCCccccccc
Q 026846 8 LDFNLRSHMKTHS-QENY----HICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRY-ATPPERITKTPKPPAGVYGS 81 (232)
Q Consensus 8 ~~~~L~~H~~~H~-~~~p----~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~-~~~c~~~~~~~~~l~~H~~~ 81 (232)
++..|.+|++.-- +++- -.|.+ |...|.....|.+|++.++. .|.++. ...++.-|.....|..|.+.
T Consensus 161 t~~el~~h~~~gd~d~~s~rGhp~C~~--C~~~fld~~el~rH~~~~h~----~chfC~~~~~~neyy~~~~dLe~HfR~ 234 (669)
T KOG2231|consen 161 TRAELNLHLMFGDPDDESCRGHPLCKF--CHERFLDDDELYRHLRFDHE----FCHFCDYKTGQNEYYNDYDDLEEHFRK 234 (669)
T ss_pred hHHHHHHHHhcCCCccccccCCccchh--hhhhhccHHHHHHhhcccee----heeecCcccccchhcccchHHHHHhhh
Confidence 4556667766421 1221 24655 88888888888888887642 221111 23334444555556666554
Q ss_pred CCCCCCccCCcccc-cccccChHHHHHHHH
Q 026846 82 ASSERPYACPYEGC-EKAYIHEYKLKLHLK 110 (232)
Q Consensus 82 H~~~k~~~C~~~~C-~k~f~~~~~l~~H~~ 110 (232)
+. |.|...-| .+.|.....+..|++
T Consensus 235 ~H----flCE~~~C~~~~f~~~~~~ei~lk 260 (669)
T KOG2231|consen 235 GH----FLCEEEFCRTKKFYVAFELEIELK 260 (669)
T ss_pred cC----ccccccccccceeeehhHHHHHHH
Confidence 33 44542224 233444434444444
No 67
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=88.14 E-value=0.3 Score=27.78 Aligned_cols=28 Identities=36% Similarity=0.668 Sum_probs=18.6
Q ss_pred CCCCccCCcccccccccCh----HHHHHHHHhhC
Q 026846 84 SERPYACPYEGCEKAYIHE----YKLKLHLKREH 113 (232)
Q Consensus 84 ~~k~~~C~~~~C~k~f~~~----~~l~~H~~~~h 113 (232)
+.....|.+ |++.+... ++|.+|++..|
T Consensus 13 ~~~~a~C~~--C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 13 DKKKAKCKY--CGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp CSS-EEETT--TTEE-----SSTHHHHHHHHHTT
T ss_pred CcCeEEeCC--CCeEEeeCCCcHHHHHHhhhhhC
Confidence 355678988 99998874 78999997655
No 68
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=87.23 E-value=0.89 Score=38.26 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=45.6
Q ss_pred cccCCCCCCCccccchhhHHHHHHH--hc---CCCCCccCCcCCCCCccccCCCCCccc---ccccCCCCCCccCCcccc
Q 026846 24 YHICPYPDCGKRYAHEYKLKNHIAS--HH---EKNAAVEVPRYATPPERITKTPKPPAG---VYGSASSERPYACPYEGC 95 (232)
Q Consensus 24 p~~C~~~~C~~~f~~~~~l~~H~~~--h~---~~~~~~c~~~~~~~c~~~~~~~~~l~~---H~~~H~~~k~~~C~~~~C 95 (232)
-|.|. .|...|.....-+.|.++ |. ..+-..-. ++.--.|..+..-.. -...-.+.-++.|.+ |
T Consensus 3 ~ftC~--tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lP----PItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~--c 74 (390)
T KOG2785|consen 3 GFTCN--TCNVEFDDADEQRAHYKSDWHRYNLKRKVASLP----PITAEEFNEKVLSDDSEKEENLEEAESVVYCEA--C 74 (390)
T ss_pred cceee--ceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCC----CcCHHHHhHHHhhhhhhhhhhhhhcccceehHH--h
Confidence 37885 699999999888888886 32 11111100 000000100000000 000112456899988 9
Q ss_pred cccccChHHHHHHHHhh
Q 026846 96 EKAYIHEYKLKLHLKRE 112 (232)
Q Consensus 96 ~k~f~~~~~l~~H~~~~ 112 (232)
.|.|........|++..
T Consensus 75 ~k~~~s~~a~~~hl~Sk 91 (390)
T KOG2785|consen 75 NKSFASPKAHENHLKSK 91 (390)
T ss_pred hccccChhhHHHHHHHh
Confidence 99999999999998863
No 69
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.96 E-value=1.1 Score=37.31 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=51.3
Q ss_pred ccCCCCCCCccccchhhHHHHHHHhcCCCCC-ccCCcCC-CCCccccCCCCCcccccccCCCCCCc----cCCccccccc
Q 026846 25 HICPYPDCGKRYAHEYKLKNHIASHHEKNAA-VEVPRYA-TPPERITKTPKPPAGVYGSASSERPY----ACPYEGCEKA 98 (232)
Q Consensus 25 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~-~c~~~~~-~~c~~~~~~~~~l~~H~~~H~~~k~~----~C~~~~C~k~ 98 (232)
|.|+...|..+....-.|+.|.+..++.--. .|...+. -.|....-+...|+.|...-..+..| .|.+ |.+.
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~F--C~~~ 229 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIF--CKIY 229 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhh--ccce
Confidence 7777666777777777888888875542110 1211111 11222233445566665543323222 3777 8888
Q ss_pred ccChHHHHHHHHhhCCC
Q 026846 99 YIHEYKLKLHLKREHPG 115 (232)
Q Consensus 99 f~~~~~l~~H~~~~h~~ 115 (232)
|..-..|.+|+|..|..
T Consensus 230 FYdDDEL~~HcR~~HE~ 246 (493)
T COG5236 230 FYDDDELRRHCRLRHEA 246 (493)
T ss_pred ecChHHHHHHHHhhhhh
Confidence 88888888888876643
No 70
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=84.45 E-value=0.67 Score=42.37 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=4.8
Q ss_pred hhHHHHHHHh
Q 026846 40 YKLKNHIASH 49 (232)
Q Consensus 40 ~~l~~H~~~h 49 (232)
..|.++...+
T Consensus 39 ~el~~~~~~~ 48 (622)
T PF02724_consen 39 SELERAYEEL 48 (622)
T ss_pred HHHHHHHHHH
Confidence 4455554444
No 71
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.30 E-value=3.9 Score=30.23 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=36.9
Q ss_pred CCCCccccCCCCCcccccccCCCCCCccCCcccccccccChHHHHHHHHhhCCCCCCC
Q 026846 62 ATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD 119 (232)
Q Consensus 62 ~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~~~~ 119 (232)
|++|+.......... --|.+...|+-.|..++|..+ .+...|++|.|..|+...|.
T Consensus 83 CPLCRG~V~GWtvve-~AR~~LN~K~RsC~~e~C~F~-GtY~eLrKHar~~HP~~rP~ 138 (162)
T PF07800_consen 83 CPLCRGEVKGWTVVE-PARRFLNAKKRSCSQESCSFS-GTYSELRKHARSEHPSARPS 138 (162)
T ss_pred CccccCceeceEEch-HHHHHhccCCccCcccccccc-cCHHHHHHHHHhhCCCCCCc
Confidence 355654433322221 144556678889998889754 46678999999999887654
No 72
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.11 E-value=0.37 Score=36.95 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=24.9
Q ss_pred ccccCCChHHHHHHHH-Hhc---------CCCcccCCCCCCCccccchhhHHHHHHH
Q 026846 2 KAVAFSLDFNLRSHMK-THS---------QENYHICPYPDCGKRYAHEYKLKNHIAS 48 (232)
Q Consensus 2 C~~~f~~~~~L~~H~~-~H~---------~~~p~~C~~~~C~~~f~~~~~l~~H~~~ 48 (232)
|.++|.+..-|..|+. .|. |.-.|.|-+..|+..|.+.-..+.|+..
T Consensus 112 C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~ 168 (253)
T KOG4173|consen 112 CKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIR 168 (253)
T ss_pred HHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHH
Confidence 5555555555555543 231 3344555555566556555555555443
No 73
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=82.64 E-value=1 Score=26.32 Aligned_cols=25 Identities=40% Similarity=0.856 Sum_probs=19.4
Q ss_pred ccCCcccccccccCh-----HHHHHHHHhhCC
Q 026846 88 YACPYEGCEKAYIHE-----YKLKLHLKREHP 114 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~-----~~l~~H~~~~h~ 114 (232)
=.|.+ |++.+... ++|.+|++..|+
T Consensus 19 a~C~~--C~~~l~~~~~~gTs~L~rHl~~~h~ 48 (50)
T smart00614 19 AKCKY--CGKKLSRSSKGGTSNLRRHLRRKHP 48 (50)
T ss_pred EEecC--CCCEeeeCCCCCcHHHHHHHHhHCc
Confidence 46888 99988765 699999985454
No 74
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.45 E-value=1.2 Score=40.58 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=56.4
Q ss_pred CChHHHHHHHH-HhcCCCcccCC-----CCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccc
Q 026846 7 SLDFNLRSHMK-THSQENYHICP-----YPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYG 80 (232)
Q Consensus 7 ~~~~~L~~H~~-~H~~~~p~~C~-----~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~ 80 (232)
.....|+.|+. .|..-.-..|. +..|.|-|. ...|+.|+..--..-......-.|..|...|-....|+.|++
T Consensus 125 ~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt-~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~ 203 (669)
T KOG2231|consen 125 KSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYT-RAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLR 203 (669)
T ss_pred hHHHHHHHHHHHhhhhhccccccccceeeeeeeeheh-HHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhc
Confidence 35677888884 56432221221 001334443 455666655421100010111333667777777777888877
Q ss_pred cCCCCCCccCCc----ccccccccChHHHHHHHHhhCC
Q 026846 81 SASSERPYACPY----EGCEKAYIHEYKLKLHLKREHP 114 (232)
Q Consensus 81 ~H~~~k~~~C~~----~~C~k~f~~~~~l~~H~~~~h~ 114 (232)
.+. |.|.+ .+++..|.....|..|-+..|-
T Consensus 204 ~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~Hf 237 (669)
T KOG2231|consen 204 FDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHF 237 (669)
T ss_pred cce----eheeecCcccccchhcccchHHHHHhhhcCc
Confidence 654 44444 2245668888999999988774
No 75
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=81.59 E-value=1.2 Score=30.91 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=23.0
Q ss_pred CccC----CcccccccccChHHHHHHHHhhCC
Q 026846 87 PYAC----PYEGCEKAYIHEYKLKLHLKREHP 114 (232)
Q Consensus 87 ~~~C----~~~~C~k~f~~~~~l~~H~~~~h~ 114 (232)
.|.| .. |+..+++...|.+|++.+|+
T Consensus 80 G~~C~~~~~~--C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 80 GYRCQCDPPH--CGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CeeeecCCCC--CCcEeccHHHHHHHHHHhcC
Confidence 4889 66 99999999999999998874
No 76
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.90 E-value=0.86 Score=38.58 Aligned_cols=7 Identities=14% Similarity=-0.164 Sum_probs=3.1
Q ss_pred HHHHHHh
Q 026846 105 LKLHLKR 111 (232)
Q Consensus 105 l~~H~~~ 111 (232)
+..|...
T Consensus 145 ~a~hr~~ 151 (514)
T KOG3130|consen 145 KAKHRIA 151 (514)
T ss_pred HHHHHhh
Confidence 4455433
No 77
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=74.96 E-value=3.9 Score=34.06 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.3
Q ss_pred CccccCCChHHHHHHHHH--hcC
Q 026846 1 MKAVAFSLDFNLRSHMKT--HSQ 21 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~--H~~ 21 (232)
||.|.|..+..|+.||+. |..
T Consensus 200 yCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 200 YCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred eeccccCCcHHHHHHHHhccCcc
Confidence 799999999999999984 554
No 78
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=73.96 E-value=1.8 Score=25.83 Aligned_cols=31 Identities=23% Similarity=0.593 Sum_probs=25.7
Q ss_pred HhcCCCcccCCCCCCCccccchhhHHHHHHHhc
Q 026846 18 THSQENYHICPYPDCGKRYAHEYKLKNHIASHH 50 (232)
Q Consensus 18 ~H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~ 50 (232)
.-.|+-.+.|+ .|++.|..+-...+|+..-+
T Consensus 11 ~RDGE~~lrCP--RC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 11 DRDGEEFLRCP--RCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred ccCCceeeeCC--chhHHHHHhHHHHHHhhHHh
Confidence 34678889995 79999999999999987643
No 79
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=71.41 E-value=2.7 Score=32.96 Aligned_cols=32 Identities=25% Similarity=0.605 Sum_probs=24.4
Q ss_pred CCCCccCCcccccccccChHHHHHHHHhhCCCCC
Q 026846 84 SERPYACPYEGCEKAYIHEYKLKLHLKREHPGHM 117 (232)
Q Consensus 84 ~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~~ 117 (232)
.+..|.|.. |+|.|.-..-+++|+...|....
T Consensus 74 ~~~K~~C~l--c~KlFkg~eFV~KHI~nKH~e~v 105 (214)
T PF04959_consen 74 DEDKWRCPL--CGKLFKGPEFVRKHIFNKHPEKV 105 (214)
T ss_dssp SSEEEEE-S--SS-EESSHHHHHHHHHHH-HHHH
T ss_pred cCCEECCCC--CCcccCChHHHHHHHhhcCHHHH
Confidence 355699987 99999999999999999887543
No 80
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=69.20 E-value=3.2 Score=29.88 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=16.3
Q ss_pred CCCccCCcccccccccChHHHHHHHHhhCCCC
Q 026846 85 ERPYACPYEGCEKAYIHEYKLKLHLKREHPGH 116 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~ 116 (232)
..-..|-. |||.|.. |++|++.||+-.
T Consensus 70 ~d~i~cle--cGk~~k~---LkrHL~~~~glt 96 (132)
T PF05443_consen 70 PDYIICLE--CGKKFKT---LKRHLRTHHGLT 96 (132)
T ss_dssp SS-EE-TB--T--EESB---HHHHHHHTT-S-
T ss_pred cCeeEEcc--CCcccch---HHHHHHHccCCC
Confidence 34467866 9999987 599999987653
No 81
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=68.34 E-value=3 Score=33.17 Aligned_cols=47 Identities=21% Similarity=0.552 Sum_probs=33.7
Q ss_pred cccCCCCCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCcccccccccChH
Q 026846 24 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEY 103 (232)
Q Consensus 24 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~~ 103 (232)
.|.|.+ ||-... +..+.+|+...++ .-|.|.. |+++|.+ .
T Consensus 3 ~FtCnv--CgEsvK-Kp~vekH~srCrn----------------------------------~~fSCID--C~k~F~~-~ 42 (276)
T KOG2186|consen 3 FFTCNV--CGESVK-KPQVEKHMSRCRN----------------------------------AYFSCID--CGKTFER-V 42 (276)
T ss_pred EEehhh--hhhhcc-ccchHHHHHhccC----------------------------------CeeEEee--ccccccc-c
Confidence 378864 998766 4557778877642 4588876 9999988 5
Q ss_pred HHHHHHH
Q 026846 104 KLKLHLK 110 (232)
Q Consensus 104 ~l~~H~~ 110 (232)
..+.|.+
T Consensus 43 sYknH~k 49 (276)
T KOG2186|consen 43 SYKNHTK 49 (276)
T ss_pred hhhhhhh
Confidence 6677754
No 82
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=68.23 E-value=4.2 Score=31.34 Aligned_cols=58 Identities=22% Similarity=0.456 Sum_probs=32.9
Q ss_pred cccCCC--CCCCccccchhhHHHHHHHhcCCCCCccCCcCCCCCccccCCCCCcccccccCCCCCCccCCc--ccccccc
Q 026846 24 YHICPY--PDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPY--EGCEKAY 99 (232)
Q Consensus 24 p~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~--~~C~k~f 99 (232)
.|.|++ ..|...|.. .....|.+.. .-+||.|+. .+|++.=
T Consensus 14 ~~pC~~~~~GC~~~~~~-~~~~~HE~~C----------------------------------~~~p~~CP~~~~~C~~~G 58 (198)
T PF03145_consen 14 KFPCKNAKYGCTETFPY-SEKREHEEEC----------------------------------PFRPCSCPFPGSGCDWQG 58 (198)
T ss_dssp -EE-CCGGGT---EE-G-GGHHHHHHT-----------------------------------TTSEEE-SSSSTT---EE
T ss_pred eecCCCCCCCCcccccc-cChhhHhccC----------------------------------CCcCCcCCCCCCCccccC
Confidence 477775 358877665 4567777765 257899987 6787654
Q ss_pred cChHHHHHHHHhhCCCCC
Q 026846 100 IHEYKLKLHLKREHPGHM 117 (232)
Q Consensus 100 ~~~~~l~~H~~~~h~~~~ 117 (232)
....|..|....|....
T Consensus 59 -~~~~l~~Hl~~~H~~~~ 75 (198)
T PF03145_consen 59 -SYKELLDHLRDKHSWNV 75 (198)
T ss_dssp -ECCCHHHHHHHHTTTSE
T ss_pred -CHHHHHHHHHHHCCCcc
Confidence 45689999998887643
No 83
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=67.55 E-value=3.3 Score=29.79 Aligned_cols=24 Identities=42% Similarity=0.956 Sum_probs=15.6
Q ss_pred ccCCCCCCCccccchhhHHHHHHHhcCCC
Q 026846 25 HICPYPDCGKRYAHEYKLKNHIASHHEKN 53 (232)
Q Consensus 25 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~ 53 (232)
-.|- .||+.|.. |++|++.|+|-.
T Consensus 73 i~cl--ecGk~~k~---LkrHL~~~~glt 96 (132)
T PF05443_consen 73 IICL--ECGKKFKT---LKRHLRTHHGLT 96 (132)
T ss_dssp EE-T--BT--EESB---HHHHHHHTT-S-
T ss_pred eEEc--cCCcccch---HHHHHHHccCCC
Confidence 5685 59999998 699999997643
No 84
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=67.04 E-value=6.1 Score=33.45 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=37.3
Q ss_pred CccccCCChHHHHHHHHHhcCC-----------------------CcccCCCCCCC---ccccchhhHHHHHHH
Q 026846 1 MKAVAFSLDFNLRSHMKTHSQE-----------------------NYHICPYPDCG---KRYAHEYKLKNHIAS 48 (232)
Q Consensus 1 ~C~~~f~~~~~L~~H~~~H~~~-----------------------~p~~C~~~~C~---~~f~~~~~l~~H~~~ 48 (232)
+|++.|..--.-..||..|+|- .-|.|.| |+ +.|.+....+.||..
T Consensus 171 fC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~--CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 171 FCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLF--CNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred ecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEE--eccccCcccccHHHHHHHhh
Confidence 6888988888888999887762 2378876 88 889999999999875
No 85
>PF15269 zf-C2H2_7: Zinc-finger
Probab=66.92 E-value=10 Score=21.50 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.7
Q ss_pred ccCCcccccccccChHHHHHHHHh
Q 026846 88 YACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
|+|-+ |..+..-+++|-.||+.
T Consensus 21 ykcfq--cpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQ--CPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeec--CCcccchHHHHHHHHHH
Confidence 67877 99888899999999875
No 86
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=66.75 E-value=2.8 Score=33.43 Aligned_cols=17 Identities=6% Similarity=0.391 Sum_probs=9.6
Q ss_pred ccccccChHHHHHHHHh
Q 026846 95 CEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 95 C~k~f~~~~~l~~H~~~ 111 (232)
|...|+.-+++..-++.
T Consensus 108 cKQRltklTQylir~rk 124 (303)
T KOG3064|consen 108 CKQRLTKLTQYLIRMRK 124 (303)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55567766665554443
No 87
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=61.95 E-value=4.2 Score=36.11 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=5.6
Q ss_pred ccccccChHHH
Q 026846 95 CEKAYIHEYKL 105 (232)
Q Consensus 95 C~k~f~~~~~l 105 (232)
||.+|.+...+
T Consensus 158 cGFaFV~fk~~ 168 (678)
T KOG0127|consen 158 CGFAFVQFKEK 168 (678)
T ss_pred cceEEEEEeeH
Confidence 55555544433
No 88
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=59.16 E-value=8.1 Score=26.62 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=22.3
Q ss_pred ccC--CCCCCCccccchhhHHHHHHHhcC
Q 026846 25 HIC--PYPDCGKRYAHEYKLKNHIASHHE 51 (232)
Q Consensus 25 ~~C--~~~~C~~~f~~~~~l~~H~~~h~~ 51 (232)
|.| ..+.|++.+.+...+++|.+.++|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 889 234699999999999999998753
No 89
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.18 E-value=40 Score=23.50 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=51.4
Q ss_pred CCcccCCCCCCCccccchhhHHHHHHHhcCCCCCccC-------CcCCCCCccccCCCCCcccccccCCCCCCccCCccc
Q 026846 22 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEV-------PRYATPPERITKTPKPPAGVYGSASSERPYACPYEG 94 (232)
Q Consensus 22 ~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~c~-------~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~ 94 (232)
+-|-.|++ |+-.......|.+.--.-..-++|... ...+-.|.+.|........- .-.....|.|..
T Consensus 13 ~LP~~Cpi--CgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~--~~~~~~~y~C~~-- 86 (112)
T TIGR00622 13 ELPVECPI--CGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFD--ELKDSHRYVCAV-- 86 (112)
T ss_pred CCCCcCCc--CCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCccccccc--ccccccceeCCC--
Confidence 35778875 999999999998753221234445322 12356777777543211100 012234699977
Q ss_pred ccccccChHHHHHHHHh
Q 026846 95 CEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 95 C~k~f~~~~~l~~H~~~ 111 (232)
|...|-..-.+-.|...
T Consensus 87 C~~~FC~dCD~fiHe~L 103 (112)
T TIGR00622 87 CKNVFCVDCDVFVHESL 103 (112)
T ss_pred CCCccccccchhhhhhc
Confidence 99999888887788655
No 90
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=54.79 E-value=6.2 Score=28.26 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=19.6
Q ss_pred ccCCCCCCCccccchhhHHHHHHHhcCCCC
Q 026846 25 HICPYPDCGKRYAHEYKLKNHIASHHEKNA 54 (232)
Q Consensus 25 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~ 54 (232)
..|- +|||.|.+ |++|+.+|.+--|
T Consensus 77 IicL--EDGkkfKS---LKRHL~t~~gmTP 101 (148)
T COG4957 77 IICL--EDGKKFKS---LKRHLTTHYGLTP 101 (148)
T ss_pred EEEe--ccCcchHH---HHHHHhcccCCCH
Confidence 4674 69999986 9999999976433
No 91
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=54.75 E-value=11 Score=32.92 Aligned_cols=7 Identities=57% Similarity=1.274 Sum_probs=3.4
Q ss_pred CCCccCC
Q 026846 85 ERPYACP 91 (232)
Q Consensus 85 ~k~~~C~ 91 (232)
.+||.|.
T Consensus 114 Vrp~~Cl 120 (615)
T KOG3540|consen 114 VRPYRCL 120 (615)
T ss_pred cccceee
Confidence 3455553
No 92
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=53.85 E-value=11 Score=31.67 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=23.7
Q ss_pred CCCCCccCCcccccccccChHHHHHHHHhhCCCC
Q 026846 83 SSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH 116 (232)
Q Consensus 83 ~~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~ 116 (232)
+..+||+|. |++++.++..|+-|--..|.+.
T Consensus 209 t~~~p~k~~---~~~~~~T~~~l~~HS~N~~~~~ 239 (442)
T KOG4124|consen 209 TTGTPKKMP---ESLVMDTSSPLSDHSMNIDVGE 239 (442)
T ss_pred cccCCccCc---ccccccccchhhhccccCCCCc
Confidence 346899996 9999999999988855445443
No 93
>PF12907 zf-met2: Zinc-binding
Probab=50.87 E-value=5.1 Score=22.31 Aligned_cols=27 Identities=30% Similarity=0.730 Sum_probs=20.8
Q ss_pred ccCCccccccccc---ChHHHHHHHHhhCCCC
Q 026846 88 YACPYEGCEKAYI---HEYKLKLHLKREHPGH 116 (232)
Q Consensus 88 ~~C~~~~C~k~f~---~~~~l~~H~~~~h~~~ 116 (232)
+.|.+ |..+|. ....|..|....|+..
T Consensus 2 i~C~i--C~qtF~~t~~~~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 2 IICKI--CRQTFMQTTNEPQLKEHAENKHPKN 31 (40)
T ss_pred cCcHH--hhHHHHhcCCHHHHHHHHHccCCCC
Confidence 57888 997775 4567999998878764
No 94
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=50.11 E-value=15 Score=18.20 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=15.3
Q ss_pred ccCCcccccccccChHHHHHHHH
Q 026846 88 YACPYEGCEKAYIHEYKLKLHLK 110 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~~l~~H~~ 110 (232)
..|++ |++.+ ....+..|+.
T Consensus 2 v~CPi--C~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPV--CFREV-PENLINSHLD 21 (26)
T ss_pred CcCCC--CcCcc-cHHHHHHHHH
Confidence 35877 99988 6677888875
No 95
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=48.42 E-value=7.1 Score=24.87 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=14.8
Q ss_pred CCCccCCcccccccccChHH
Q 026846 85 ERPYACPYEGCEKAYIHEYK 104 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~~~~~ 104 (232)
++-+.|....||.+|...-.
T Consensus 25 ~~Y~qC~N~eCg~tF~t~es 44 (72)
T PRK09678 25 ERYHQCQNVNCSATFITYES 44 (72)
T ss_pred eeeeecCCCCCCCEEEEEEE
Confidence 56688985569999987543
No 96
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=47.10 E-value=10 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=13.3
Q ss_pred CCcccCCCCCCCccccchhhHHHHHHH
Q 026846 22 ENYHICPYPDCGKRYAHEYKLKNHIAS 48 (232)
Q Consensus 22 ~~p~~C~~~~C~~~f~~~~~l~~H~~~ 48 (232)
..+-.|++ .|+..-..+..|..|+..
T Consensus 7 ~~~v~C~~-~cc~~~i~r~~l~~H~~~ 32 (60)
T PF02176_consen 7 FRPVPCPN-GCCNEMIPRKELDDHLEN 32 (60)
T ss_dssp TSEEE-TT---S-BEEECCCHHHHHHT
T ss_pred CCEeeCCC-CCcccceeHHHHHHHHHc
Confidence 34566764 455443445678888773
No 97
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=46.97 E-value=14 Score=29.03 Aligned_cols=28 Identities=32% Similarity=0.661 Sum_probs=21.5
Q ss_pred CCcccCCCCCCCccccchhhHHHHHHHhcC
Q 026846 22 ENYHICPYPDCGKRYAHEYKLKNHIASHHE 51 (232)
Q Consensus 22 ~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~ 51 (232)
+..|.|.+ |+|.|.-..-+++|+..-|.
T Consensus 75 ~~K~~C~l--c~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 75 EDKWRCPL--CGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp SEEEEE-S--SS-EESSHHHHHHHHHHH-H
T ss_pred CCEECCCC--CCcccCChHHHHHHHhhcCH
Confidence 44599975 99999999999999998653
No 98
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=46.10 E-value=8.8 Score=29.89 Aligned_cols=14 Identities=14% Similarity=0.484 Sum_probs=7.3
Q ss_pred ccCCcccccccccChH
Q 026846 88 YACPYEGCEKAYIHEY 103 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~ 103 (232)
..|.+ =|+.|.+-+
T Consensus 97 lsc~Y--~g~eFvRvG 110 (279)
T COG5137 97 LSCRY--KGQEFVRVG 110 (279)
T ss_pred EEEee--cCceeEEEE
Confidence 44655 555565443
No 99
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=43.79 E-value=18 Score=30.27 Aligned_cols=29 Identities=31% Similarity=0.638 Sum_probs=23.7
Q ss_pred CccCCcccccccccChHHHHHHHHhh-CCCCC
Q 026846 87 PYACPYEGCEKAYIHEYKLKLHLKRE-HPGHM 117 (232)
Q Consensus 87 ~~~C~~~~C~k~f~~~~~l~~H~~~~-h~~~~ 117 (232)
.+.|-+ |-|.|..+..|+.|||.. |....
T Consensus 195 r~~CLy--CekifrdkntLkeHMrkK~Hrrin 224 (423)
T KOG2482|consen 195 RLRCLY--CEKIFRDKNTLKEHMRKKRHRRIN 224 (423)
T ss_pred hheeee--eccccCCcHHHHHHHHhccCcccC
Confidence 478988 999999999999999864 44433
No 100
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=43.39 E-value=30 Score=25.71 Aligned_cols=24 Identities=17% Similarity=0.513 Sum_probs=18.5
Q ss_pred HhcCCCcccCCCCCCCccccchhhHH
Q 026846 18 THSQENYHICPYPDCGKRYAHEYKLK 43 (232)
Q Consensus 18 ~H~~~~p~~C~~~~C~~~f~~~~~l~ 43 (232)
...+..-|.|+ .|+.+|+.-..+.
T Consensus 103 ~e~~~~~Y~Cp--~c~~r~tf~eA~~ 126 (158)
T TIGR00373 103 FETNNMFFICP--NMCVRFTFNEAME 126 (158)
T ss_pred hccCCCeEECC--CCCcEeeHHHHHH
Confidence 34567789994 7999999888774
No 101
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=42.82 E-value=5.7 Score=36.56 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.5
Q ss_pred cccCCCCCCCccccchhhHHHHHHHhc
Q 026846 24 YHICPYPDCGKRYAHEYKLKNHIASHH 50 (232)
Q Consensus 24 p~~C~~~~C~~~f~~~~~l~~H~~~h~ 50 (232)
-|.|+. |+|.|..--++..||++|.
T Consensus 792 iFpCre--C~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 792 IFPCRE--CGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred eeehHH--HHHHHHHHhhhhHHHHHHH
Confidence 389985 9999999999999999995
No 102
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=40.79 E-value=16 Score=32.66 Aligned_cols=6 Identities=33% Similarity=1.165 Sum_probs=3.5
Q ss_pred CCccCC
Q 026846 86 RPYACP 91 (232)
Q Consensus 86 k~~~C~ 91 (232)
-||+|.
T Consensus 125 LPf~~k 130 (678)
T KOG0127|consen 125 LPFKCK 130 (678)
T ss_pred CCcccC
Confidence 366664
No 103
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=40.36 E-value=19 Score=31.71 Aligned_cols=32 Identities=28% Similarity=0.603 Sum_probs=27.8
Q ss_pred CCCccCCcccccccccChHHHHHHHHhhCCCCCC
Q 026846 85 ERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS 118 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~~~ 118 (232)
-+-+.|++ |.+.|.....+..|+...|.+...
T Consensus 55 WrFWiCp~--CskkF~d~~~~~~H~~~eH~~~l~ 86 (466)
T PF04780_consen 55 WRFWICPR--CSKKFSDAESCLSHMEQEHPAGLK 86 (466)
T ss_pred eeEeeCCc--ccceeCCHHHHHHHHHHhhhhhcC
Confidence 45789988 999999999999999988887654
No 104
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=39.72 E-value=19 Score=27.05 Aligned_cols=13 Identities=38% Similarity=0.956 Sum_probs=10.6
Q ss_pred CCCCCccCCcccccc
Q 026846 83 SSERPYACPYEGCEK 97 (232)
Q Consensus 83 ~~~k~~~C~~~~C~k 97 (232)
.|+.|.+|++ ||.
T Consensus 145 ~ge~P~~CPi--Cga 157 (166)
T COG1592 145 EGEAPEVCPI--CGA 157 (166)
T ss_pred cCCCCCcCCC--CCC
Confidence 5788999988 983
No 105
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=39.42 E-value=1.8e+02 Score=22.59 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=16.0
Q ss_pred ccccccChHHHHHHHHh
Q 026846 95 CEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 95 C~k~f~~~~~l~~H~~~ 111 (232)
||-.|.+...|+.|+|.
T Consensus 10 ~~~~f~tl~eiR~hlrs 26 (200)
T PF03286_consen 10 GGSNFKTLEEIRAHLRS 26 (200)
T ss_pred CCccceeHHHHHHHHhh
Confidence 88999999999999987
No 106
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.65 E-value=22 Score=18.59 Aligned_cols=11 Identities=45% Similarity=1.304 Sum_probs=8.5
Q ss_pred CCCccCCcccccc
Q 026846 85 ERPYACPYEGCEK 97 (232)
Q Consensus 85 ~k~~~C~~~~C~k 97 (232)
..++.|+. ||.
T Consensus 15 ~~~~~CP~--Cg~ 25 (33)
T cd00350 15 EAPWVCPV--CGA 25 (33)
T ss_pred cCCCcCcC--CCC
Confidence 37899977 975
No 107
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=38.51 E-value=19 Score=25.38 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=22.2
Q ss_pred CCCCccCCcccccccccChHHHHHHHHh
Q 026846 84 SERPYACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 84 ~~k~~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
|...|-|-. |.+-|.....|..|.++
T Consensus 54 G~GqfyCi~--CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 54 GGGQFYCIE--CARYFIDAKALKTHFKT 79 (129)
T ss_pred CCceeehhh--hhhhhcchHHHHHHHhc
Confidence 445688966 99999999999999875
No 108
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=38.48 E-value=23 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.722 Sum_probs=14.6
Q ss_pred cCCCcccCCCCCCCccccchhh
Q 026846 20 SQENYHICPYPDCGKRYAHEYK 41 (232)
Q Consensus 20 ~~~~p~~C~~~~C~~~f~~~~~ 41 (232)
.+..-|.|+ .|+..|.....
T Consensus 95 ~~~~~Y~Cp--~C~~~y~~~ea 114 (147)
T smart00531 95 TNNAYYKCP--NCQSKYTFLEA 114 (147)
T ss_pred cCCcEEECc--CCCCEeeHHHH
Confidence 355679995 69999986543
No 109
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=37.33 E-value=21 Score=19.25 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=9.8
Q ss_pred CCCccCCccccccccc
Q 026846 85 ERPYACPYEGCEKAYI 100 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~ 100 (232)
.+..+|+. |+..|.
T Consensus 23 g~~v~C~~--C~~~f~ 36 (36)
T PF13717_consen 23 GRKVRCSK--CGHVFF 36 (36)
T ss_pred CcEEECCC--CCCEeC
Confidence 34578877 988773
No 110
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=36.90 E-value=9.5 Score=35.20 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCccCCcccccccccChHHHHHHHHhhCC
Q 026846 86 RPYACPYEGCEKAYIHEYKLKLHLKREHP 114 (232)
Q Consensus 86 k~~~C~~~~C~k~f~~~~~l~~H~~~~h~ 114 (232)
.-|.|.. |+|.|-.-..+..||++|..
T Consensus 791 giFpCre--C~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 791 GIFPCRE--CGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred ceeehHH--HHHHHHHHhhhhHHHHHHHH
Confidence 3599977 99999988888899988543
No 111
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=36.63 E-value=24 Score=19.08 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=10.2
Q ss_pred CCCccCCccccccccc
Q 026846 85 ERPYACPYEGCEKAYI 100 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~ 100 (232)
.+..+|.. |+..|.
T Consensus 23 ~~~vrC~~--C~~~f~ 36 (37)
T PF13719_consen 23 GRKVRCPK--CGHVFR 36 (37)
T ss_pred CcEEECCC--CCcEee
Confidence 45678877 988774
No 112
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=35.77 E-value=47 Score=27.97 Aligned_cols=33 Identities=27% Similarity=0.559 Sum_probs=24.9
Q ss_pred CCcccCCCCCCCccccchhhHHHHHHHhcCCCCCc
Q 026846 22 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAV 56 (232)
Q Consensus 22 ~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~ 56 (232)
...|.|+| |++.-.+...|..|+..-+..-++.
T Consensus 77 ~qSftCPy--C~~~Gfte~~f~~Hv~s~Hpda~~~ 109 (381)
T KOG1280|consen 77 PQSFTCPY--CGIMGFTERQFGTHVLSQHPEASTS 109 (381)
T ss_pred cccccCCc--ccccccchhHHHHHhhhcCcccCcc
Confidence 44699988 9988888888999988766554443
No 113
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=35.40 E-value=23 Score=19.01 Aligned_cols=12 Identities=17% Similarity=0.564 Sum_probs=8.8
Q ss_pred CccCCccccccccc
Q 026846 87 PYACPYEGCEKAYI 100 (232)
Q Consensus 87 ~~~C~~~~C~k~f~ 100 (232)
...|+. |+..|.
T Consensus 25 ~v~C~~--C~~~~~ 36 (38)
T TIGR02098 25 KVRCGK--CGHVWY 36 (38)
T ss_pred EEECCC--CCCEEE
Confidence 477877 988774
No 114
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=35.39 E-value=7.7 Score=19.74 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=11.4
Q ss_pred ccCCcccccccccChHHHHHHH
Q 026846 88 YACPYEGCEKAYIHEYKLKLHL 109 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~~l~~H~ 109 (232)
|.|.. |++.|. ....+.|.
T Consensus 1 ~sCiD--C~~~F~-~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCID--CSKDFD-GDSYKSHT 19 (28)
T ss_dssp EEETT--TTEEEE-GGGTTT--
T ss_pred Ceeec--CCCCcC-cCCcCCCC
Confidence 46766 999994 44455553
No 115
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.25 E-value=1e+02 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=8.3
Q ss_pred ccCCcccccccccC
Q 026846 88 YACPYEGCEKAYIH 101 (232)
Q Consensus 88 ~~C~~~~C~k~f~~ 101 (232)
..|.. ||+.|.-
T Consensus 10 R~Cp~--CG~kFYD 21 (108)
T PF09538_consen 10 RTCPS--CGAKFYD 21 (108)
T ss_pred ccCCC--Ccchhcc
Confidence 56755 8887763
No 116
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=34.35 E-value=22 Score=26.39 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=11.6
Q ss_pred CccCCcccccccccChHH
Q 026846 87 PYACPYEGCEKAYIHEYK 104 (232)
Q Consensus 87 ~~~C~~~~C~k~f~~~~~ 104 (232)
.+.|+. ||++|...-.
T Consensus 28 ~~~c~~--c~~~f~~~e~ 43 (154)
T PRK00464 28 RRECLA--CGKRFTTFER 43 (154)
T ss_pred eeeccc--cCCcceEeEe
Confidence 388876 9999876543
No 117
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.73 E-value=40 Score=23.28 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=14.9
Q ss_pred CCCCccCCcccccccccChHHHH
Q 026846 84 SERPYACPYEGCEKAYIHEYKLK 106 (232)
Q Consensus 84 ~~k~~~C~~~~C~k~f~~~~~l~ 106 (232)
...|..|++ ||++| ..+.|.
T Consensus 23 NrdPiVsPy--tG~s~-P~s~fe 42 (129)
T COG4530 23 NRDPIVSPY--TGKSY-PRSYFE 42 (129)
T ss_pred CCCccccCc--ccccc-hHHHHH
Confidence 367899999 99999 444454
No 118
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.56 E-value=27 Score=18.50 Aligned_cols=10 Identities=40% Similarity=1.085 Sum_probs=7.7
Q ss_pred CCccCCcccccc
Q 026846 86 RPYACPYEGCEK 97 (232)
Q Consensus 86 k~~~C~~~~C~k 97 (232)
.|..|++ ||.
T Consensus 17 ~p~~CP~--Cg~ 26 (34)
T cd00729 17 APEKCPI--CGA 26 (34)
T ss_pred CCCcCcC--CCC
Confidence 5778977 875
No 119
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=33.50 E-value=27 Score=31.26 Aligned_cols=33 Identities=24% Similarity=0.646 Sum_probs=28.0
Q ss_pred CCCCccCCcccccccccChHHHHHHHHhhCCCC
Q 026846 84 SERPYACPYEGCEKAYIHEYKLKLHLKREHPGH 116 (232)
Q Consensus 84 ~~k~~~C~~~~C~k~f~~~~~l~~H~~~~h~~~ 116 (232)
+...|-|...+|.|.|.-.--.++|++..|...
T Consensus 506 ~kdKy~C~lsgc~KlF~gpEFvrKHi~~KH~d~ 538 (648)
T KOG2295|consen 506 DKDKYLCPLSGCAKLFKGPEFVRKHINKKHKDK 538 (648)
T ss_pred hcccccCCCcchHhhccCHHHHHHHHHHHHHHH
Confidence 445799999999999999999999999888653
No 120
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=32.85 E-value=24 Score=21.80 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=5.6
Q ss_pred CCCccCCccccccccc
Q 026846 85 ERPYACPYEGCEKAYI 100 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~ 100 (232)
.+.+.|.. ||..|-
T Consensus 23 ~rrhhCr~--CG~~vC 36 (69)
T PF01363_consen 23 RRRHHCRN--CGRVVC 36 (69)
T ss_dssp S-EEE-TT--T--EEE
T ss_pred eeeEccCC--CCCEEC
Confidence 34456655 666654
No 121
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=31.82 E-value=22 Score=19.58 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=11.8
Q ss_pred CccCCcccccccccCh
Q 026846 87 PYACPYEGCEKAYIHE 102 (232)
Q Consensus 87 ~~~C~~~~C~k~f~~~ 102 (232)
||.|.. |++.|-..
T Consensus 12 ~f~C~~--C~~~FC~~ 25 (39)
T smart00154 12 GFKCRH--CGNLFCGE 25 (39)
T ss_pred CeECCc--cCCccccc
Confidence 899988 99999754
No 122
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=30.53 E-value=16 Score=28.04 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=10.6
Q ss_pred CcccCCCCCCCccccch
Q 026846 23 NYHICPYPDCGKRYAHE 39 (232)
Q Consensus 23 ~p~~C~~~~C~~~f~~~ 39 (232)
-||.|.+ |.+.|.+.
T Consensus 195 IPF~C~i--CKkdy~sp 209 (259)
T COG5152 195 IPFLCGI--CKKDYESP 209 (259)
T ss_pred Cceeehh--chhhccch
Confidence 4788876 87777653
No 123
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=30.17 E-value=41 Score=19.74 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=9.2
Q ss_pred CCCccCCcccccccccC
Q 026846 85 ERPYACPYEGCEKAYIH 101 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~~ 101 (232)
.+.+.|.. ||+.|-.
T Consensus 16 ~rk~~Cr~--Cg~~~C~ 30 (57)
T cd00065 16 RRRHHCRN--CGRIFCS 30 (57)
T ss_pred ccccccCc--CcCCcCh
Confidence 34566766 7777654
No 124
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.09 E-value=21 Score=28.01 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=15.2
Q ss_pred CcccCCCCCCCccccchhhHHHHHH
Q 026846 23 NYHICPYPDCGKRYAHEYKLKNHIA 47 (232)
Q Consensus 23 ~p~~C~~~~C~~~f~~~~~l~~H~~ 47 (232)
+.+.|++ |++.|..+.-+....+
T Consensus 4 k~~~CPv--C~~~F~~~~vrs~~~r 26 (214)
T PF09986_consen 4 KKITCPV--CGKEFKTKKVRSGKIR 26 (214)
T ss_pred CceECCC--CCCeeeeeEEEcCCce
Confidence 5578865 8888887755444433
No 125
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=29.75 E-value=11 Score=21.68 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=12.7
Q ss_pred CCCccCCcccccccccCh
Q 026846 85 ERPYACPYEGCEKAYIHE 102 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~~~ 102 (232)
+.-|.|....||.+|...
T Consensus 23 ~~Y~qC~N~~Cg~tfv~~ 40 (47)
T PF04606_consen 23 ELYCQCTNPECGHTFVAN 40 (47)
T ss_pred EEEEEECCCcCCCEEEEE
Confidence 345778777799988753
No 126
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=29.73 E-value=47 Score=25.22 Aligned_cols=21 Identities=19% Similarity=0.755 Sum_probs=16.0
Q ss_pred cCCCcccCCCCCCCccccchhhH
Q 026846 20 SQENYHICPYPDCGKRYAHEYKL 42 (232)
Q Consensus 20 ~~~~p~~C~~~~C~~~f~~~~~l 42 (232)
....-|.|+ .|+.+|+.-..+
T Consensus 113 ~~~~~Y~Cp--~C~~rytf~eA~ 133 (178)
T PRK06266 113 ENNMFFFCP--NCHIRFTFDEAM 133 (178)
T ss_pred cCCCEEECC--CCCcEEeHHHHh
Confidence 345679995 699999887765
No 127
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=29.48 E-value=24 Score=23.54 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=12.0
Q ss_pred CCCccCCcccccccccCh
Q 026846 85 ERPYACPYEGCEKAYIHE 102 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~~~ 102 (232)
...|.|.. |+++|+-.
T Consensus 52 ~GIW~C~~--C~~~~AGG 67 (90)
T PTZ00255 52 VGIWRCKG--CKKTVAGG 67 (90)
T ss_pred eEEEEcCC--CCCEEeCC
Confidence 45689976 99998643
No 128
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=29.42 E-value=51 Score=20.07 Aligned_cols=11 Identities=45% Similarity=1.171 Sum_probs=8.2
Q ss_pred CCCccCCcccccc
Q 026846 85 ERPYACPYEGCEK 97 (232)
Q Consensus 85 ~k~~~C~~~~C~k 97 (232)
..+|.|+. ||.
T Consensus 48 g~~Y~Cp~--CGF 58 (61)
T COG2888 48 GNPYRCPK--CGF 58 (61)
T ss_pred CCceECCC--cCc
Confidence 46899965 984
No 129
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=28.84 E-value=26 Score=23.77 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=15.7
Q ss_pred cccCCCCCCccCCcccccccccC
Q 026846 79 YGSASSERPYACPYEGCEKAYIH 101 (232)
Q Consensus 79 ~~~H~~~k~~~C~~~~C~k~f~~ 101 (232)
++++.| +|+.|.. ||..|.-
T Consensus 72 ~~l~~g-~~~rC~e--CG~~fkL 91 (97)
T cd00924 72 MWLEKG-KPKRCPE--CGHVFKL 91 (97)
T ss_pred EEEeCC-CceeCCC--CCcEEEE
Confidence 556777 7999976 9998863
No 130
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=28.59 E-value=30 Score=30.32 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.3
Q ss_pred ccCCcccccccccChHHHHHHHHhh
Q 026846 88 YACPYEGCEKAYIHEYKLKLHLKRE 112 (232)
Q Consensus 88 ~~C~~~~C~k~f~~~~~l~~H~~~~ 112 (232)
+-|.+ |+|+|.+..+|..|.++.
T Consensus 293 lyC~v--CnKsFKseKq~kNHEnSK 315 (508)
T KOG0717|consen 293 LYCVV--CNKSFKSEKQLKNHENSK 315 (508)
T ss_pred eEEee--ccccccchHHHHhhHHHH
Confidence 77988 999999999999998753
No 131
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=27.85 E-value=25 Score=23.79 Aligned_cols=13 Identities=23% Similarity=0.731 Sum_probs=7.9
Q ss_pred CccCCcccccccccC
Q 026846 87 PYACPYEGCEKAYIH 101 (232)
Q Consensus 87 ~~~C~~~~C~k~f~~ 101 (232)
...|.+ |+.+|..
T Consensus 47 ~~sC~i--C~esFqt 59 (109)
T KOG3214|consen 47 KASCRI--CEESFQT 59 (109)
T ss_pred eeeeee--hhhhhcc
Confidence 345666 7766654
No 132
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=27.80 E-value=22 Score=30.23 Aligned_cols=11 Identities=18% Similarity=0.187 Sum_probs=4.7
Q ss_pred cccchhhHHHH
Q 026846 35 RYAHEYKLKNH 45 (232)
Q Consensus 35 ~f~~~~~l~~H 45 (232)
+...+.-|..|
T Consensus 68 slKaRvlLhah 78 (520)
T KOG4434|consen 68 SLKARVLLHAH 78 (520)
T ss_pred hHHHHHHHHHH
Confidence 44444444444
No 133
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=27.18 E-value=40 Score=30.46 Aligned_cols=28 Identities=21% Similarity=0.567 Sum_probs=24.0
Q ss_pred CCcccCCCCCCCccccchhhHHHHHHHhcC
Q 026846 22 ENYHICPYPDCGKRYAHEYKLKNHIASHHE 51 (232)
Q Consensus 22 ~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~ 51 (232)
.+|..|.. ||.+|........||-.|..
T Consensus 416 ~~pnqC~~--CG~R~~~~ee~sk~md~H~d 443 (579)
T KOG2071|consen 416 DSPNQCKS--CGLRFDDSEERSKHMDIHDD 443 (579)
T ss_pred CCcchhcc--cccccccchhhhhHhhhhhh
Confidence 56789975 99999999999999988853
No 134
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=27.06 E-value=68 Score=31.28 Aligned_cols=8 Identities=13% Similarity=0.509 Sum_probs=4.1
Q ss_pred ccccccCh
Q 026846 95 CEKAYIHE 102 (232)
Q Consensus 95 C~k~f~~~ 102 (232)
||..|.+.
T Consensus 788 c~~yf~rg 795 (1128)
T KOG2051|consen 788 CGPYFTRG 795 (1128)
T ss_pred cccccccc
Confidence 55555443
No 135
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=26.50 E-value=10 Score=34.06 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCccccchhh
Q 026846 10 FNLRSHMKTHSQENYHICPYPDCGKRYAHEYK 41 (232)
Q Consensus 10 ~~L~~H~~~H~~~~p~~C~~~~C~~~f~~~~~ 41 (232)
+.|.+|..+|....--+|. .|+|.|.++-.
T Consensus 239 ~~fvrHHWVHrrRqeGkC~--~CgKgFQQKf~ 268 (1004)
T KOG0782|consen 239 SGFVRHHWVHRRRQEGKCN--TCGKGFQQKFF 268 (1004)
T ss_pred ccchHHhHhhHhhhccccc--hhhhhhhhhee
Confidence 3556666666555555675 47777766543
No 136
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=26.15 E-value=36 Score=18.92 Aligned_cols=13 Identities=46% Similarity=1.372 Sum_probs=10.8
Q ss_pred CCccCCccccccccc
Q 026846 86 RPYACPYEGCEKAYI 100 (232)
Q Consensus 86 k~~~C~~~~C~k~f~ 100 (232)
++-.|++ ||..|.
T Consensus 28 ~~~~CpY--Cg~~yv 40 (40)
T PF10276_consen 28 GPVVCPY--CGTRYV 40 (40)
T ss_dssp CEEEETT--TTEEEE
T ss_pred CeEECCC--CCCEEC
Confidence 5789999 999884
No 137
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=25.92 E-value=24 Score=23.59 Aligned_cols=15 Identities=13% Similarity=0.496 Sum_probs=11.5
Q ss_pred CCCccCCcccccccccC
Q 026846 85 ERPYACPYEGCEKAYIH 101 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~~ 101 (232)
...|.|.. |+++|+-
T Consensus 51 ~GIW~C~~--C~~~~AG 65 (91)
T TIGR00280 51 TGIWTCRK--CGAKFAG 65 (91)
T ss_pred eEEEEcCC--CCCEEeC
Confidence 45689977 9998864
No 138
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=25.83 E-value=47 Score=21.98 Aligned_cols=15 Identities=13% Similarity=0.474 Sum_probs=11.5
Q ss_pred CCCccCCcccccccccC
Q 026846 85 ERPYACPYEGCEKAYIH 101 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~~ 101 (232)
..-|.|.- ||+.|+-
T Consensus 51 ~GIW~C~k--Cg~~fAG 65 (89)
T COG1997 51 TGIWKCRK--CGAKFAG 65 (89)
T ss_pred cCeEEcCC--CCCeecc
Confidence 45689977 9999864
No 140
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.12 E-value=35 Score=16.94 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=7.9
Q ss_pred ccCCccccccccc
Q 026846 88 YACPYEGCEKAYI 100 (232)
Q Consensus 88 ~~C~~~~C~k~f~ 100 (232)
-.|+. ||..|.
T Consensus 15 ~~Cp~--CG~~F~ 25 (26)
T PF10571_consen 15 KFCPH--CGYDFE 25 (26)
T ss_pred CcCCC--CCCCCc
Confidence 45766 888875
No 141
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=24.86 E-value=35 Score=24.82 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=27.4
Q ss_pred CccCCcCCCCCccccCCCCCcccccccCCCCCCccCCcccccccccChHHHHHHHHh
Q 026846 55 AVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 55 ~~c~~~~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
|+-...||.+||. .-+|.|.. ||-.+-...=|..|..+
T Consensus 114 ~KP~r~fCaVCG~-----------------~S~ysC~~--CG~kyCsv~C~~~HneT 151 (156)
T KOG3362|consen 114 FKPLRKFCAVCGY-----------------DSKYSCVN--CGTKYCSVRCLKTHNET 151 (156)
T ss_pred CCCcchhhhhcCC-----------------CchhHHHh--cCCceeechhhhhcccc
Confidence 3344567788883 35699977 99999888888777543
No 142
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=24.56 E-value=42 Score=29.12 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=17.0
Q ss_pred cCCCcccCCCCCCCccccchhhHH
Q 026846 20 SQENYHICPYPDCGKRYAHEYKLK 43 (232)
Q Consensus 20 ~~~~p~~C~~~~C~~~f~~~~~l~ 43 (232)
+...-|.|+ .|.+.|+....++
T Consensus 124 t~~~~Y~Cp--~C~kkyt~Lea~~ 145 (436)
T KOG2593|consen 124 TNVAGYVCP--NCQKKYTSLEALQ 145 (436)
T ss_pred cccccccCC--ccccchhhhHHHH
Confidence 456679996 5999999876654
No 143
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=24.20 E-value=58 Score=28.13 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=44.0
Q ss_pred cccCCCCCCCccccchhhHHHHHHHhcCCCC--------Cc-cCCcCCCCCccccCCCCCcccccccCC-----CCC--C
Q 026846 24 YHICPYPDCGKRYAHEYKLKNHIASHHEKNA--------AV-EVPRYATPPERITKTPKPPAGVYGSAS-----SER--P 87 (232)
Q Consensus 24 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~--------~~-c~~~~~~~c~~~~~~~~~l~~H~~~H~-----~~k--~ 87 (232)
-|.|.-+.|++.+.++..+.+|...|-.+.- |+ |.-+.-..|.| +-+....|-.-|+ |-+ -
T Consensus 271 hyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrrth 347 (480)
T KOG4377|consen 271 HYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTH 347 (480)
T ss_pred hhcccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceecce
Confidence 3667656799888889999999999865332 11 10111155665 3344444544443 222 3
Q ss_pred ccCCccccccccc
Q 026846 88 YACPYEGCEKAYI 100 (232)
Q Consensus 88 ~~C~~~~C~k~f~ 100 (232)
|.|...+|..+|.
T Consensus 348 fhC~r~gCTdtfK 360 (480)
T KOG4377|consen 348 FHCQRIGCTDTFK 360 (480)
T ss_pred eEEeccCCccccc
Confidence 7788856666766
No 144
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=23.54 E-value=55 Score=28.49 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=21.9
Q ss_pred CCCCCccccCCCCCcccccccCCCCCCccCCcccccccccCh
Q 026846 61 YATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHE 102 (232)
Q Consensus 61 ~~~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~~~C~k~f~~~ 102 (232)
.|+.||...++. |.+-|+|+. ||+.+...
T Consensus 352 ~Cp~Cg~~m~S~-----------G~~g~rC~k--Cg~~~~~~ 380 (421)
T COG1571 352 VCPRCGGRMKSA-----------GRNGFRCKK--CGTRARET 380 (421)
T ss_pred CCCccCCchhhc-----------CCCCccccc--ccccCCcc
Confidence 457788877763 556899987 99888765
No 145
>PHA00626 hypothetical protein
Probab=23.12 E-value=38 Score=20.35 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=12.6
Q ss_pred CCCccCCcccccccccCh
Q 026846 85 ERPYACPYEGCEKAYIHE 102 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~~~ 102 (232)
...|+|.. ||..|+..
T Consensus 21 snrYkCkd--CGY~ft~~ 36 (59)
T PHA00626 21 SDDYVCCD--CGYNDSKD 36 (59)
T ss_pred CcceEcCC--CCCeechh
Confidence 35799987 99998754
No 146
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=23.03 E-value=28 Score=23.24 Aligned_cols=15 Identities=13% Similarity=0.483 Sum_probs=11.5
Q ss_pred CCCccCCcccccccccC
Q 026846 85 ERPYACPYEGCEKAYIH 101 (232)
Q Consensus 85 ~k~~~C~~~~C~k~f~~ 101 (232)
...|.|.. |+++|+-
T Consensus 52 ~GIW~C~~--C~~~~AG 66 (90)
T PRK03976 52 TGIWECRK--CGAKFAG 66 (90)
T ss_pred EEEEEcCC--CCCEEeC
Confidence 45689977 9998864
No 147
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=22.78 E-value=37 Score=24.33 Aligned_cols=15 Identities=20% Similarity=0.629 Sum_probs=12.4
Q ss_pred CccCCcccccccccChH
Q 026846 87 PYACPYEGCEKAYIHEY 103 (232)
Q Consensus 87 ~~~C~~~~C~k~f~~~~ 103 (232)
|++|.. ||+.|...+
T Consensus 1 PH~Ct~--Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTK--CGRVFEDGS 15 (131)
T ss_pred CcccCc--CCCCcCCCc
Confidence 678987 999998764
No 148
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=22.56 E-value=27 Score=19.51 Aligned_cols=15 Identities=27% Similarity=0.824 Sum_probs=9.6
Q ss_pred CCccCCcccccccccCh
Q 026846 86 RPYACPYEGCEKAYIHE 102 (232)
Q Consensus 86 k~~~C~~~~C~k~f~~~ 102 (232)
-||.|.. |++.|-..
T Consensus 12 ~~~~C~~--C~~~FC~~ 26 (43)
T PF01428_consen 12 LPFKCKH--CGKSFCLK 26 (43)
T ss_dssp SHEE-TT--TS-EE-TT
T ss_pred CCeECCC--CCcccCcc
Confidence 5899988 99999753
No 149
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=22.33 E-value=55 Score=27.65 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=7.6
Q ss_pred ccccchhhHHHHHHHh
Q 026846 34 KRYAHEYKLKNHIASH 49 (232)
Q Consensus 34 ~~f~~~~~l~~H~~~h 49 (232)
.+|++.-.|..|--.+
T Consensus 156 htYss~ckLe~~aC~~ 171 (434)
T KOG3555|consen 156 HTYSSRCKLEYHACHV 171 (434)
T ss_pred CeehhhhhHHHHhhhh
Confidence 4455555555554333
No 150
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=93 Score=25.68 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=10.3
Q ss_pred CcccCCCCCCCccccc
Q 026846 23 NYHICPYPDCGKRYAH 38 (232)
Q Consensus 23 ~p~~C~~~~C~~~f~~ 38 (232)
-||.|.+ |.+.|..
T Consensus 240 ~Pf~c~i--cr~~f~~ 253 (313)
T KOG1813|consen 240 LPFKCFI--CRKYFYR 253 (313)
T ss_pred CCccccc--ccccccc
Confidence 4788875 8877765
No 151
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.60 E-value=48 Score=26.65 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=34.3
Q ss_pred ccccCCChHHHHHHHHHhcCCCcccCCCCCCCccccchhhHHHHHHHhcCCCCC
Q 026846 2 KAVAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAA 55 (232)
Q Consensus 2 C~~~f~~~~~L~~H~~~H~~~~p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~ 55 (232)
||-... +..|.+|+-+-++ ..|.| ..|++.|.. .....|...-+...-|
T Consensus 9 CgEsvK-Kp~vekH~srCrn-~~fSC--IDC~k~F~~-~sYknH~kCITEaQKY 57 (276)
T KOG2186|consen 9 CGESVK-KPQVEKHMSRCRN-AYFSC--IDCGKTFER-VSYKNHTKCITEAQKY 57 (276)
T ss_pred hhhhcc-ccchHHHHHhccC-CeeEE--eeccccccc-chhhhhhhhcchHHHh
Confidence 444433 3456779877666 67999 489999998 7788888776644333
No 152
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=21.55 E-value=33 Score=31.01 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=16.7
Q ss_pred CcccccccCCCCCCccCCcccccccccCh
Q 026846 74 PPAGVYGSASSERPYACPYEGCEKAYIHE 102 (232)
Q Consensus 74 ~l~~H~~~H~~~k~~~C~~~~C~k~f~~~ 102 (232)
.|.+|-++|....--+|.. |||.|.++
T Consensus 240 ~fvrHHWVHrrRqeGkC~~--CgKgFQQK 266 (1004)
T KOG0782|consen 240 GFVRHHWVHRRRQEGKCNT--CGKGFQQK 266 (1004)
T ss_pred cchHHhHhhHhhhccccch--hhhhhhhh
Confidence 5666666665555556765 77776554
No 153
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=21.27 E-value=60 Score=27.45 Aligned_cols=15 Identities=27% Similarity=0.219 Sum_probs=6.2
Q ss_pred CCChHHHHHHHHHhc
Q 026846 6 FSLDFNLRSHMKTHS 20 (232)
Q Consensus 6 f~~~~~L~~H~~~H~ 20 (232)
++...-|..|...+.
T Consensus 158 Yss~ckLe~~aC~~s 172 (434)
T KOG3555|consen 158 YSSRCKLEYHACHVS 172 (434)
T ss_pred ehhhhhHHHHhhhhh
Confidence 333344444444433
No 154
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=20.91 E-value=81 Score=19.21 Aligned_cols=11 Identities=45% Similarity=1.238 Sum_probs=8.1
Q ss_pred CCCccCCcccccc
Q 026846 85 ERPYACPYEGCEK 97 (232)
Q Consensus 85 ~k~~~C~~~~C~k 97 (232)
..+|.|+. ||.
T Consensus 46 ~~~Y~CP~--CGF 56 (59)
T PRK14890 46 SNPYTCPK--CGF 56 (59)
T ss_pred CCceECCC--CCC
Confidence 46799966 984
No 155
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=20.90 E-value=8.5 Score=35.51 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=16.8
Q ss_pred CCCCccCCcccccccccChHHHHHH
Q 026846 84 SERPYACPYEGCEKAYIHEYKLKLH 108 (232)
Q Consensus 84 ~~k~~~C~~~~C~k~f~~~~~l~~H 108 (232)
+-|.-+|+. |+.+|+...-++.|
T Consensus 675 etRqRKCP~--Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 675 ETRQRKCPK--CNAAFGANDVHRIH 697 (698)
T ss_pred HHhcCCCCC--CCCCCCcccccccC
Confidence 345678966 99999988766554
No 156
>PF05477 SURF2: Surfeit locus protein 2 (SURF2); InterPro: IPR008833 Surfeit locus protein 2 is part of a group of at least six sequence unrelated genes (Surf-1 to Surf-6). The six Surfeit genes have been classified as housekeeping genes, being expressed in all tissue types tested and not containing a TATA box in their promoter region. The exact function of SURF2 is unknown [].
Probab=20.21 E-value=89 Score=25.11 Aligned_cols=9 Identities=11% Similarity=0.312 Sum_probs=4.7
Q ss_pred CCCcccCCC
Q 026846 21 QENYHICPY 29 (232)
Q Consensus 21 ~~~p~~C~~ 29 (232)
+...++|.+
T Consensus 22 ~~~rvrC~l 30 (244)
T PF05477_consen 22 ENGRVRCTL 30 (244)
T ss_pred CCCeEEEee
Confidence 344566654
No 157
>PF14353 CpXC: CpXC protein
Probab=20.09 E-value=23 Score=25.07 Aligned_cols=23 Identities=30% Similarity=0.717 Sum_probs=15.7
Q ss_pred CccCCcccccccccChHHHHHHHHh
Q 026846 87 PYACPYEGCEKAYIHEYKLKLHLKR 111 (232)
Q Consensus 87 ~~~C~~~~C~k~f~~~~~l~~H~~~ 111 (232)
.|.|+. ||+.|.-...+..|-..
T Consensus 38 ~~~CP~--Cg~~~~~~~p~lY~D~~ 60 (128)
T PF14353_consen 38 SFTCPS--CGHKFRLEYPLLYHDPE 60 (128)
T ss_pred EEECCC--CCCceecCCCEEEEcCC
Confidence 578876 98888766666555443
Done!