BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026847
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G67|A Chain A, Thiamin Phosphate Synthase
pdb|1G67|B Chain B, Thiamin Phosphate Synthase
Length = 225
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 174 LDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
+ Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 127 VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 167
>pdb|1G4P|A Chain A, Thiamin Phosphate Synthase
pdb|1G4P|B Chain B, Thiamin Phosphate Synthase
pdb|1G4S|A Chain A, Thiamin Phosphate Synthase
pdb|1G4S|B Chain B, Thiamin Phosphate Synthase
Length = 226
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 174 LDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
+ Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 128 VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 168
>pdb|1G4E|A Chain A, Thiamin Phosphate Synthase
pdb|1G4E|B Chain B, Thiamin Phosphate Synthase
pdb|1G6C|A Chain A, Thiamin Phosphate Synthase
pdb|1G6C|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 174 LDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
+ Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 129 VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 169
>pdb|2TPS|A Chain A, Thiamin Phosphate Synthase
pdb|2TPS|B Chain B, Thiamin Phosphate Synthase
pdb|1G4T|A Chain A, Thiamin Phosphate Synthase
pdb|1G4T|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 174 LDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
+ Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 129 VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 169
>pdb|1G69|A Chain A, Thiamin Phosphate Synthase
pdb|1G69|B Chain B, Thiamin Phosphate Synthase
Length = 228
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 174 LDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
+ Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 130 VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 170
>pdb|3O15|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase Complexed With A Carboxylated Thiazole
Phosphate
Length = 235
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 174 LDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
+ Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 137 VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 177
>pdb|3O16|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase K159a
Length = 235
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 174 LDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
+ Q+ D D +G GP+ PTET + SL+E VR++
Sbjct: 137 VKQAEEDGADYVGLGPIYPTETAKDTRAVQGVSLIEAVRRQ 177
>pdb|4HJ1|A Chain A, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
pdb|4HJ1|B Chain B, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
pdb|4HJ1|C Chain C, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
pdb|4HJ1|D Chain D, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
Length = 432
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 48 QLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSY-----GSLQQANNNNNHSLSPHER 102
+L+AH SCLR I P+ID QL + +++ + GSL Q N+ + S R
Sbjct: 252 SVLSAHESCLRAPNLISYKPMID-QLECTTNLIDPFVVFERGSLPQTRNDKTFAASKGNR 310
>pdb|4HJC|A Chain A, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (non- Glycosylated)
Length = 428
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 48 QLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSY-----GSLQQANNNNNHSLSPHER 102
+L+AH SCLR I P+ID QL + +++ + GSL Q N+ + S R
Sbjct: 249 SVLSAHESCLRAPNLISYKPMID-QLECTTNLIDPFVVFERGSLPQTRNDKTFAASKGNR 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,305,543
Number of Sequences: 62578
Number of extensions: 188137
Number of successful extensions: 447
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 14
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)