Query 026847
Match_columns 232
No_of_seqs 151 out of 235
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 23:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jqq_A Conserved oligomeric go 62.5 9.5 0.00032 33.2 4.8 40 110-151 82-121 (204)
2 1xc0_A Pardaxin P-4, PA4; BEND 52.2 7.5 0.00026 24.6 1.8 18 36-53 5-22 (33)
3 2l2l_A Transcriptional repress 37.8 14 0.00049 24.8 1.5 13 198-210 8-20 (43)
4 1jwq_A N-acetylmuramoyl-L-alan 28.0 41 0.0014 27.3 3.1 41 174-216 5-48 (179)
5 2w9j_A Signal recognition part 27.1 31 0.0011 26.0 2.0 20 101-120 63-82 (91)
6 1e8o_B SRP14, signal recogniti 26.9 30 0.001 26.7 2.0 19 100-118 70-88 (106)
7 1m46_B IQ4, IQ4 motif from MYO 26.6 47 0.0016 19.9 2.4 16 198-213 8-24 (26)
8 3fp5_A Acyl-COA binding protei 26.1 83 0.0028 24.2 4.4 34 104-143 72-105 (106)
9 3c01_A Surface presentation of 23.9 31 0.0011 23.4 1.4 10 204-213 3-12 (48)
10 3j0g_M E3 protein; alphavirus, 23.7 34 0.0011 24.5 1.6 23 35-57 32-54 (59)
11 1cxz_B Protein (PKN); protein- 21.3 37 0.0013 25.6 1.5 24 188-212 16-39 (86)
12 4g29_A Secreted effector prote 20.3 48 0.0016 28.4 2.1 42 174-225 93-138 (186)
No 1
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=62.49 E-value=9.5 Score=33.15 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhCC
Q 026847 110 AQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGV 151 (232)
Q Consensus 110 eaYc~mL~kyKEEL~kPv~v~f~EA~~F~~~IEsQL~sLtg~ 151 (232)
-.|-.-|-....-|++|. -..|++.+++++-..|+++|+-
T Consensus 82 l~YLkkLD~l~~~Lq~h~--~Lse~l~l~kqLs~sLh~mC~~ 121 (204)
T 2jqq_A 82 LEYLKKLDEIYGSLRNHS--QLTEALSLGKRLSKSLHEMCGI 121 (204)
T ss_dssp HHHHHHHHHHHHTCSSSS--HHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHhCC
Confidence 468888999999999995 4899999999999999999975
No 2
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=52.16 E-value=7.5 Score=24.56 Aligned_cols=18 Identities=39% Similarity=0.645 Sum_probs=15.2
Q ss_pred HHHHHhhCCChHHHHHHH
Q 026847 36 IKAEIASHPLYEQLLAAH 53 (232)
Q Consensus 36 iKAkI~sHPlYp~LL~Ay 53 (232)
+--||++.|++..||+|-
T Consensus 5 lipkiissplfktllsav 22 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAV 22 (33)
T ss_dssp SHHHHTTTTTHHHHHHHH
T ss_pred hhhHHHccHHHHHHHHHH
Confidence 346899999999999874
No 3
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=37.78 E-value=14 Score=24.84 Aligned_cols=13 Identities=23% Similarity=0.787 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHH
Q 026847 198 SLMERVRQELKIE 210 (232)
Q Consensus 198 slmervrqelk~e 210 (232)
.++.++|+||+.|
T Consensus 8 ~~i~~LreeLR~E 20 (43)
T 2l2l_A 8 RMIKQLKEELRLE 20 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999876
No 4
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=27.96 E-value=41 Score=27.29 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=29.1
Q ss_pred CCCCCCCccccCCCCCCccChh-hhhHHHHHHHHHHHHHhh--ccc
Q 026847 174 LDQSASDSHDLMGFGPLLPTET-ERSLMERVRQELKIELKQ--VMT 216 (232)
Q Consensus 174 ~~d~~~d~~d~~gfgpl~~te~-erslmervrqelk~elkq--g~~ 216 (232)
.+||+..|.|....||- --. |..+.-.|-+.||.+|++ ||+
T Consensus 5 vIDpGHGG~D~Ga~g~~--g~~~Ek~~~l~ia~~l~~~L~~~~G~~ 48 (179)
T 1jwq_A 5 VIDAGHGAKDSGAVGIS--RKNYEKTFNLAMALKVESILKQNPKLE 48 (179)
T ss_dssp EEEECCBTTBCCSBCTT--SSCBHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred EEECCCCCCCCCcCCCC--CCccHHHHHHHHHHHHHHHHHhCCCCE
Confidence 47888888887777751 123 555777888888888876 665
No 5
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=27.06 E-value=31 Score=26.03 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=16.6
Q ss_pred CCCchhHHHHHHHHHHHHHH
Q 026847 101 ERQELDNFLAQYLIVLCTFK 120 (232)
Q Consensus 101 ~DPELDqFMeaYc~mL~kyK 120 (232)
...+|+.|+.+|+.+|..-=
T Consensus 63 ~~~~l~~F~~~Y~~v~K~~M 82 (91)
T 2w9j_A 63 ELDYFTDFFQSYAEVXKGQI 82 (91)
T ss_dssp EGGGHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCC
Confidence 45899999999999987543
No 6
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=26.87 E-value=30 Score=26.69 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=16.3
Q ss_pred CCCCchhHHHHHHHHHHHH
Q 026847 100 HERQELDNFLAQYLIVLCT 118 (232)
Q Consensus 100 g~DPELDqFMeaYc~mL~k 118 (232)
....+|+.|+.+|+.+|..
T Consensus 70 V~~~dl~~F~~~Y~~v~K~ 88 (106)
T 1e8o_B 70 VSSKEVNKFQMAYSNLLRA 88 (106)
T ss_dssp EETTTHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHh
Confidence 4568999999999999864
No 7
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=26.56 E-value=47 Score=19.91 Aligned_cols=16 Identities=50% Similarity=0.783 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHH-HHhh
Q 026847 198 SLMERVRQELKI-ELKQ 213 (232)
Q Consensus 198 slmervrqelk~-elkq 213 (232)
+|-.++|.|||. .|||
T Consensus 8 nlqkkirkelkqrqlkq 24 (26)
T 1m46_B 8 NLQKKIRKELKQRQLKQ 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 467788999884 4666
No 8
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=26.12 E-value=83 Score=24.18 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 026847 104 ELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIEN 143 (232)
Q Consensus 104 ELDqFMeaYc~mL~kyKEEL~kPv~v~f~EA~~F~~~IEs 143 (232)
.-++=|..|+.++.+....-.. .||..++.+||.
T Consensus 72 S~eeA~~~YI~~v~~l~~~~~~------~~~~~~~~~le~ 105 (106)
T 3fp5_A 72 SKEVAYQKYVEKLLEILKKADT------EESKKYIAEIEA 105 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCS------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCc------HHHHHHHHHHhc
Confidence 3467899999999999888333 599999999985
No 9
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=23.93 E-value=31 Score=23.44 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=8.4
Q ss_pred HHHHHHHHhh
Q 026847 204 RQELKIELKQ 213 (232)
Q Consensus 204 rqelk~elkq 213 (232)
+||+|.|.|+
T Consensus 3 kqEvK~E~Ke 12 (48)
T 3c01_A 3 KEEVKREMKE 12 (48)
T ss_pred HHHHHHHHHh
Confidence 6888888886
No 10
>3j0g_M E3 protein; alphavirus, bioweapon, VEEV; 4.80A {Venezuelan equine encephalitis virus}
Probab=23.73 E-value=34 Score=24.48 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=19.1
Q ss_pred HHHHHHhhCCChHHHHHHHHcch
Q 026847 35 LIKAEIASHPLYEQLLAAHVSCL 57 (232)
Q Consensus 35 ~iKAkI~sHPlYp~LL~AyvdC~ 57 (232)
+|=..=+.||-|-.||.|-+.|.
T Consensus 32 ~mLe~Nvd~pgY~~LL~a~l~C~ 54 (59)
T 3j0g_M 32 AMLSVNVDNPGYDELLEAAVKCP 54 (59)
T ss_dssp HHHHHTSSSTTHHHHHHHHHSCC
T ss_pred HHHHHhCCCccHHHHHHHHhcCc
Confidence 45555678999999999999994
No 11
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=21.26 E-value=37 Score=25.64 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=16.9
Q ss_pred CCCccChhhhhHHHHHHHHHHHHHh
Q 026847 188 GPLLPTETERSLMERVRQELKIELK 212 (232)
Q Consensus 188 gpl~~te~erslmervrqelk~elk 212 (232)
.|++....| ..-+++|||+++|||
T Consensus 16 d~~~q~~le-~~r~~ir~eI~KElK 39 (86)
T 1cxz_B 16 APGVQQQLE-LERERLRREIRKELK 39 (86)
T ss_dssp SHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred ChHHHHHHH-HHHHHHHHHHHHHHh
Confidence 366664433 466889999999975
No 12
>4g29_A Secreted effector protein SSEI; cysteine protease superfamily, protein binding; 1.70A {Salmonella enterica subsp} PDB: 4g2b_A
Probab=20.26 E-value=48 Score=28.41 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=27.3
Q ss_pred CCCCCCCccccCCC----CCCccChhhhhHHHHHHHHHHHHHhhcccceeEEEEEE
Q 026847 174 LDQSASDSHDLMGF----GPLLPTETERSLMERVRQELKIELKQVMTTYIYIYIYI 225 (232)
Q Consensus 174 ~~d~~~d~~d~~gf----gpl~~te~erslmervrqelk~elkqg~~~~~~~~~~~ 225 (232)
.||+.+.--..-|+ |||+-||+. -.+|-| |.++.|+|-|.=.
T Consensus 93 VfDlTAhQF~n~g~s~l~gPiI~te~~--W~~ryq--------~a~~~KlV~YkDF 138 (186)
T 4g29_A 93 VFDVSAHQFENRGMSNLNGPLILSADE--WVCKYR--------MATRRKLIYYTDF 138 (186)
T ss_dssp EEETTGGGGTTTTCTTCCSCEEEEHHH--HHHHHH--------HC---CEEEEEEE
T ss_pred EEcccHHHHHhcCCccCCCcccccHHH--HHHHHH--------HHHhhceEEeecc
Confidence 36766654443343 899999998 778877 5678888887643
Done!