Query 026847
Match_columns 232
No_of_seqs 151 out of 235
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 23:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026847.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026847hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f66c1 a.2.17.3 (C:142-206) V 67.8 1.3 9.1E-05 30.6 2.0 23 100-122 35-57 (65)
2 d1znfa_ g.37.1.1 (A:) XFIN, th 25.5 14 0.00099 20.9 1.3 12 120-131 13-24 (26)
3 d1914a2 d.49.1.1 (A:2001-2097) 25.4 18 0.0013 25.8 2.3 18 101-118 72-89 (97)
4 d1whra_ d.68.7.1 (A:) R3H doma 22.0 57 0.0042 23.6 4.7 32 104-151 14-46 (124)
5 d1qrjb1 a.28.3.1 (B:131-214) H 21.1 27 0.002 24.2 2.5 33 28-65 44-80 (84)
6 d2j01q1 d.41.4.2 (Q:6-141) Rib 18.9 24 0.0017 26.6 1.9 40 190-231 29-71 (136)
7 d1o6za2 d.162.1.1 (A:163-330) 18.3 42 0.0031 23.6 3.2 24 190-213 136-159 (161)
8 d1cxzb_ a.2.6.1 (B:) Protein k 15.5 49 0.0036 23.3 2.8 13 200-212 27-39 (86)
9 d1ldna2 d.162.1.1 (A:163-330) 15.4 55 0.004 23.3 3.2 26 190-215 142-167 (168)
10 d1wz3a1 d.15.1.7 (A:10-93) Aut 13.8 29 0.0021 24.4 1.1 25 197-230 30-54 (84)
No 1
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=67.81 E-value=1.3 Score=30.61 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=19.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHH
Q 026847 100 HERQELDNFLAQYLIVLCTFKEQ 122 (232)
Q Consensus 100 g~DPELDqFMeaYc~mL~kyKEE 122 (232)
..+.|||+|.+.|.++=+.|+-.
T Consensus 35 ~~s~elD~Fi~qYl~~RTeYH~r 57 (65)
T d2f66c1 35 DSADDLDQFIKNYLDIRTQYHLR 57 (65)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999744
No 2
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=25.53 E-value=14 Score=20.85 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=9.8
Q ss_pred HHHHhhhhhcch
Q 026847 120 KEQLQQHVRVHA 131 (232)
Q Consensus 120 KEEL~kPv~v~f 131 (232)
|..|++|.|||-
T Consensus 13 ksalsrhqrvhk 24 (26)
T d1znfa_ 13 KSALSRHQRVHK 24 (26)
T ss_dssp HHHHHHHGGGTC
T ss_pred HHHHHHHHHhhc
Confidence 578999999983
No 3
>d1914a2 d.49.1.1 (A:2001-2097) Signal recognition particle 14KDa protein, SRP14 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.41 E-value=18 Score=25.83 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.7
Q ss_pred CCCchhHHHHHHHHHHHH
Q 026847 101 ERQELDNFLAQYLIVLCT 118 (232)
Q Consensus 101 ~DPELDqFMeaYc~mL~k 118 (232)
...+|+.|+.+|+.+|..
T Consensus 72 ~~~~~~~F~~~Y~~v~Ka 89 (97)
T d1914a2 72 SSKEVNKFQMAYSNLLRA 89 (97)
T ss_dssp ETTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 568999999999999865
No 4
>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.96 E-value=57 Score=23.62 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHHHHHHHHh-hhhhcchHHHHHHHHHHHHHHHHhhCC
Q 026847 104 ELDNFLAQYLIVLCTFKEQLQ-QHVRVHAVEAVMGCREIENTLQALTGV 151 (232)
Q Consensus 104 ELDqFMeaYc~mL~kyKEEL~-kPv~v~f~EA~~F~~~IEsQL~sLtg~ 151 (232)
.|++||. +.|. +| .--.||-+||++|..+...
T Consensus 14 dl~~fl~----------~~l~~~~------~dr~fil~lE~~l~~Fi~d 46 (124)
T d1whra_ 14 DLHEFLV----------NTLKKNP------RDRMMLLKLEQEILEFIND 46 (124)
T ss_dssp CHHHHHH----------HHHHHCT------TTHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHH----------HHHHcCh------HhHHHHHHHHHHHHHHHhC
Confidence 3999964 4554 56 4567999999999998853
No 5
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=21.07 E-value=27 Score=24.20 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=19.9
Q ss_pred cchhhHHHHHHHHhhCCC----hHHHHHHHHcchhccCCCCc
Q 026847 28 DQTATVQLIKAEIASHPL----YEQLLAAHVSCLRVATPIDQ 65 (232)
Q Consensus 28 ~~t~~~~~iKAkI~sHPl----Yp~LL~AyvdC~KVGAPpev 65 (232)
+++| +...|+.|.++|. -...+. .|+ ||.|..-
T Consensus 44 ~qNA-NpdCk~~lr~l~~~~~tlee~~~---aC~-vg~P~~k 80 (84)
T d1qrjb1 44 YSNA-NKECQKLLQARGHTNSPLGDMLR---ACQ-TWTPKDK 80 (84)
T ss_dssp TTTB-CHHHHHHHHHTTCSSSCHHHHHH---HHT-TCCCCCC
T ss_pred HHcc-cHHHHHHHHhcCCCCCCHHHHHH---Hhc-CCCcchh
Confidence 3433 4567888877764 233333 488 8888653
No 6
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]}
Probab=18.91 E-value=24 Score=26.55 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=30.0
Q ss_pred CccChhh---hhHHHHHHHHHHHHHhhcccceeEEEEEEEEEEee
Q 026847 190 LLPTETE---RSLMERVRQELKIELKQVMTTYIYIYIYINITITT 231 (232)
Q Consensus 190 l~~te~e---rslmervrqelk~elkqg~~~~~~~~~~~~~~~~~ 231 (232)
|..+|+. -..+|..|+=+.+.||.++ +|+|.|+-|+.+|.
T Consensus 29 L~a~~~g~it~~qiEa~R~~i~r~lk~~g--k~wiri~P~~pvTk 71 (136)
T d2j01q1 29 LVALEPAWITAQQIEAARVAMVRHFRRGG--KIFIRIFPDKPYTK 71 (136)
T ss_dssp EEESSCEEEEHHHHHHHHHHHHHHTSSCC--EEEECCCCCEEECC
T ss_pred eeeeEccEEcHHHHHHHHHHHHhhcccCC--eEEEEecCCeEEEe
Confidence 3444444 3579999999999999875 67777777777764
No 7
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=18.27 E-value=42 Score=23.60 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.5
Q ss_pred CccChhhhhHHHHHHHHHHHHHhh
Q 026847 190 LLPTETERSLMERVRQELKIELKQ 213 (232)
Q Consensus 190 l~~te~erslmervrqelk~elkq 213 (232)
|--+|.|+..+++-.+|||.++++
T Consensus 136 l~l~~~E~~~L~~s~~~L~~~~~~ 159 (161)
T d1o6za2 136 WDLDDYEQDLMADAAEKLSDQYDK 159 (161)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999986
No 8
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.46 E-value=49 Score=23.32 Aligned_cols=13 Identities=54% Similarity=0.831 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHh
Q 026847 200 MERVRQELKIELK 212 (232)
Q Consensus 200 mervrqelk~elk 212 (232)
-+++|||+.+|||
T Consensus 27 r~~lr~eI~KELK 39 (86)
T d1cxzb_ 27 RERLRREIRKELK 39 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4578888888876
No 9
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.36 E-value=55 Score=23.25 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=23.1
Q ss_pred CccChhhhhHHHHHHHHHHHHHhhcc
Q 026847 190 LLPTETERSLMERVRQELKIELKQVM 215 (232)
Q Consensus 190 l~~te~erslmervrqelk~elkqg~ 215 (232)
|--++.|+..+++--++||..++|.|
T Consensus 142 l~Ls~~E~~~L~~s~~~lk~~i~~a~ 167 (168)
T d1ldna2 142 IELNDDEKNRFHHSAATLKSVLARAF 167 (168)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 44689999999999999999999976
No 10
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.85 E-value=29 Score=24.45 Aligned_cols=25 Identities=16% Similarity=0.557 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHhhcccceeEEEEEEEEEEe
Q 026847 197 RSLMERVRQELKIELKQVMTTYIYIYIYINITIT 230 (232)
Q Consensus 197 rslmervrqelk~elkqg~~~~~~~~~~~~~~~~ 230 (232)
-+++.-+|..||. + -+|+|||-+..
T Consensus 30 ~~vi~FLrk~Lk~-------d--svf~Yin~sFa 54 (84)
T d1wz3a1 30 ANVIDFLRRQLHS-------D--SLFVYVNSAFS 54 (84)
T ss_dssp HHHHHHHHHHHTC-------S--SCEEEEEEEEC
T ss_pred HHHHHHHHHHhcC-------C--eEEEEEccccC
Confidence 3577777777763 2 37889997753
Done!