BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026848
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FNN|A Chain A, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
pdb|1FNN|B Chain B, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
Length = 389
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 147 LFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLS-YAKREDGK 205
L D A+ G G+ I +A + G DTN G D R A L S YA +++G+
Sbjct: 202 LLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG--DARLAIDILYRSAYAAQQNGR 259
Query: 206 ESLFGDDSRATLEEVLVFCSPQI 228
+ + +D R + +EVL S ++
Sbjct: 260 KHIAPEDVRKSSKEVLFGISEEV 282
>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
Length = 766
Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 114 YDTFDAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGG-----PQFGADGLLIG--- 165
Y + F Y+ D+ G + + IT +GGS ALF GG GAD L+G
Sbjct: 206 YIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGAD--LVGKVE 263
Query: 166 ---PPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAK 200
P P + +GD+ S L SYA+
Sbjct: 264 RNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAE 301
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 105 EGYRSTDDYYDTFDAFLFYWTDNNGKIDDPI-----TLPKIGGSGAALFDYARGGPQFGA 159
E R D Y AFL W + I + I LPK+ AL+D A G+
Sbjct: 226 EVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS 285
Query: 160 DGL 162
DGL
Sbjct: 286 DGL 288
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 108 RSTD-DYYDTFDAFLFYW----TDNNGKIDDPITLPKIGGSGAALFDYA--RGGP-QFGA 159
RS D D D+ D F+W D+NG +D P+ + GG G + D A GP + +
Sbjct: 37 RSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVNS 96
Query: 160 DGLL 163
DG L
Sbjct: 97 DGKL 100
>pdb|1X1H|A Chain A, Crystal Structure Of Xanthan Lyase (N194a)
pdb|1X1I|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) Complexed With
A Product
pdb|1X1J|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) With A
Substrate
Length = 752
Score = 27.7 bits (60), Expect = 6.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 141 GGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA 176
G SG +F YA GG F ADG + GG+
Sbjct: 196 GLSGTGIFPYATGGDGFYADGSFVQHTTFAYTGGYG 231
>pdb|1J0M|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
pdb|1J0N|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
Length = 752
Score = 27.7 bits (60), Expect = 6.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 141 GGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA 176
G SG +F YA GG F ADG + GG+
Sbjct: 196 GLSGTGIFPYATGGDGFYADGSFVQHTTFAYTGGYG 231
>pdb|2E24|A Chain A, Crystal Structure Of A Mutant (R612a) Of Xanthan Lyase
Length = 752
Score = 27.7 bits (60), Expect = 6.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 141 GGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA 176
G SG +F YA GG F ADG + GG+
Sbjct: 196 GLSGTGIFPYATGGDGFYADGSFVQHTTFAYTGGYG 231
>pdb|2E22|A Chain A, Crystal Structure Of Xanthan Lyase In Complex With Mannose
Length = 752
Score = 27.7 bits (60), Expect = 6.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 141 GGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA 176
G SG +F YA GG F ADG + GG+
Sbjct: 196 GLSGTGIFPYATGGDGFYADGSFVQHTTFAYTGGYG 231
>pdb|3RR1|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RR1|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RRA|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
pdb|3RRA|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
Length = 405
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 144 GAALFDYARGGPQFGADGLLIGPPLAPVMG 173
GA L DY R F +G I PP P +G
Sbjct: 321 GAELLDYVRNKADFALEGGYIRPPRLPGLG 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,145,629
Number of Sequences: 62578
Number of extensions: 384572
Number of successful extensions: 543
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 14
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)