BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026848
         (232 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8BV66|IFI44_MOUSE Interferon-induced protein 44 OS=Mus musculus GN=Ifi44 PE=2 SV=1
          Length = 422

 Score = 35.0 bits (79), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 58  GRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTD 111
           G+     YKA++  FS  N    C+ +GP +I+ ++ K +  G +  EG++  D
Sbjct: 21  GKRFCLLYKASVQKFSHQNLLCTCENQGPTMIVVYSEKCV-IGMYLKEGFQGKD 73


>sp|Q9SIE1|PAT_ARATH Bifunctional aspartate aminotransferase and
           glutamate/aspartate-prephenate aminotransferase
           OS=Arabidopsis thaliana GN=PAT PE=1 SV=2
          Length = 475

 Score = 33.1 bits (74), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 10/90 (11%)

Query: 143 SGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQA-----KSRLGLS 197
           SG  +   A G P F    ++    +  +  GF     N+GI +LR+A     K   GLS
Sbjct: 97  SGVPVIRLAAGEPDFDTPKVVAEAGINAIREGFTRYTLNAGITELREAICRKLKEENGLS 156

Query: 198 YAKREDGKESLFGDDSRAT-LEEVLVFCSP 226
           YA      + L  + ++ + L+ VL  CSP
Sbjct: 157 YAP----DQILVSNGAKQSLLQAVLAVCSP 182


>sp|Q54JK1|Y7728_DICDI TPR repeat-containing protein DDB_G0287999 OS=Dictyostelium
           discoideum GN=DDB_G0287999 PE=4 SV=1
          Length = 1204

 Score = 32.0 bits (71), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 90  IGHTNKSLKFGAFNPEGYR---STDDYYDTFDAFLFYWTDNNGKIDD 133
           IG  + + KF   N + Y+   ST+DYY  F+  + Y  DN   I D
Sbjct: 276 IGDIDSAFKFFEVNFKDYKDLISTNDYYKLFNGLITYSIDNQENIFD 322


>sp|Q0IID2|CT118_BOVIN Uncharacterized protein C20orf118 homolog OS=Bos taurus PE=2 SV=1
          Length = 217

 Score = 31.6 bits (70), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 48  LSLVDNTFLRGRELKCCYKATIDGFSATNFHSCCD-FKGPCVIIGHTNKSLKFGAFNPEG 106
           LSL     + G      +  + DGFS  + +   +   GP +++        FGAF+   
Sbjct: 66  LSLHLPPRVTGYSWSLAFCTSRDGFSLQSLYRQMEGHSGPVLLVLRDQDGQMFGAFSSSA 125

Query: 107 YRSTDDYYDTFDAFLF 122
            R +  +Y T + FLF
Sbjct: 126 LRLSKGFYGTGETFLF 141


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.140    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,799,713
Number of Sequences: 539616
Number of extensions: 4788087
Number of successful extensions: 8668
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8668
Number of HSP's gapped (non-prelim): 12
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)