Query 026848
Match_columns 232
No_of_seqs 182 out of 549
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 13:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07534 TLD: TLD; InterPro: 99.9 7.3E-26 1.6E-30 180.1 9.8 132 63-225 1-138 (139)
2 smart00584 TLDc domain in TBC 99.9 5.7E-24 1.2E-28 177.4 14.3 141 58-225 22-164 (165)
3 KOG2557 Uncharacterized conser 99.8 9E-20 2E-24 167.5 11.4 144 58-225 232-378 (427)
4 KOG2372 Oxidation resistance p 99.8 2.6E-18 5.6E-23 149.5 10.2 141 59-225 99-240 (241)
5 COG5142 OXR1 Oxidation resista 99.5 2.5E-13 5.4E-18 114.5 9.0 141 59-225 57-211 (212)
6 KOG2801 Probable Rab-GAPs [Int 98.1 3.4E-07 7.3E-12 83.9 -2.4 69 60-128 365-439 (559)
7 KOG4636 Uncharacterized conser 98.1 3E-05 6.5E-10 72.7 10.2 92 59-159 297-394 (483)
8 PF13418 Kelch_4: Galactose ox 31.6 24 0.00051 22.6 0.9 36 85-127 4-39 (49)
9 PF15050 SCIMP: SCIMP protein 30.1 24 0.00053 28.6 0.9 33 15-47 96-128 (133)
10 KOG4693 Uncharacterized conser 24.9 1.2E+02 0.0027 28.2 4.5 64 90-160 247-311 (392)
11 PF05351 GMP_PDE_delta: GMP-PD 20.7 35 0.00076 28.7 0.2 11 2-12 100-111 (157)
No 1
>PF07534 TLD: TLD; InterPro: IPR006571 TLDc is a domain of unknown function, restricted to eukaryotes, and commonly found in TBC (IPR000195 from INTERPRO) and LysM (IPR002482 from INTERPRO) domain containing proteins [].; PDB: 4ACJ_A.
Probab=99.93 E-value=7.3e-26 Score=180.14 Aligned_cols=132 Identities=27% Similarity=0.476 Sum_probs=82.9
Q ss_pred EEEeecccCCcHHHHHHhccCCCCEEEEEEeCCCCeEEeecCCCCCCCCC-ccCCCceEEEEEeCCCCCCCCCeeeeecC
Q 026848 63 CCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDD-YYDTFDAFLFYWTDNNGKIDDPITLPKIG 141 (232)
Q Consensus 63 LlY~as~dGfs~~~Fh~~cd~kGptl~iiks~~g~VFGgY~s~~w~~~~~-~~~d~~aFLFsl~~~~~~~~~P~k~~~~~ 141 (232)
|||++++||+|.++||++|++++|||+||++++|+|||||++++|..... |++|.++|||+|.+.. .+++..+
T Consensus 1 Lly~s~~dG~s~~~f~~~~~~~~~~l~iv~t~~g~iFG~y~~~~~~~~~~~~~~~~~~FlF~l~~~~------~~~~~~~ 74 (139)
T PF07534_consen 1 LLYSSSRDGFSFNTFHSKCDGKGPTLLIVKTSDGQIFGAYTSQPWKSSNKGYFGDSESFLFSLEPKF------KIFKWTG 74 (139)
T ss_dssp EEEEHHHH-S-HHHHHHHHTT-S-EEEEEEETTS-EEEEEESS-----SS--B--TT-EEEE-SSS-------EEEE--S
T ss_pred CcCccchhCcCHHHHHHhcCCCCCEEEEEECCCCcEEEEEeCCcccccCccccCCCCeEEEEecccc------ceeeccc
Confidence 89999999999999999999999999999999999999999999987654 9999999999996543 2444433
Q ss_pred CCCceEEeCCCCCcccCCC----CCccCCCCCCcCCCCCCCCCCCCCCCCcceeecCCcccccCCCCCcccc-CCCCcee
Q 026848 142 GSGAALFDYARGGPQFGAD----GLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLF-GDDSRAT 216 (232)
Q Consensus 142 ~~~~ai~~~~~~gp~FG~~----dL~I~~~l~~~~G~f~G~Dl~~~~~~~~~s~S~lG~tY~~~p~g~~s~l-ag~~~F~ 216 (232)
...+++.....++.||.. +|.|. .+...+.++.+.+|+..+ +. .+...|+
T Consensus 75 -~~~~~~~~~~~~~~fG~~~~~~~l~i~-------------------~~~~~~~~~~~~ty~~~~-----l~~~~~~~f~ 129 (139)
T PF07534_consen 75 -KNQNYINCNNQGLGFGGGSNGFDLWID-------------------SDFNSGSSSHSETYGNPP-----LSNDGQESFD 129 (139)
T ss_dssp -S----EEEETTEEEES-SSSS-SEEEE-------------------TTS-EEEE--BTTTTB-------SS--SSSEEE
T ss_pred -ccceeeeccCCcceEeecCCceEEEEe-------------------CCCCcEEEeCCCccCCCc-----ccCCCCCCcE
Confidence 334555555678999973 45553 255667777778995322 22 3788999
Q ss_pred EeEEEEeec
Q 026848 217 LEEVLVFCS 225 (232)
Q Consensus 217 V~EiEVf~~ 225 (232)
|.|||||..
T Consensus 130 i~~iEV~~~ 138 (139)
T PF07534_consen 130 IDEIEVWGL 138 (139)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEEEE
Confidence 999999974
No 2
>smart00584 TLDc domain in TBC and LysM domain containing proteins.
Probab=99.91 E-value=5.7e-24 Score=177.39 Aligned_cols=141 Identities=18% Similarity=0.258 Sum_probs=107.4
Q ss_pred CceeEEEEeecccCCcHHHHHHhccCC-CCEEEEEEeCCCCeEEeecCCCCCCCCCccCCCceEEEEEeCCCCCCCCCee
Q 026848 58 GRELKCCYKATIDGFSATNFHSCCDFK-GPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPIT 136 (232)
Q Consensus 58 ~~~~~LlY~as~dGfs~~~Fh~~cd~k-Gptl~iiks~~g~VFGgY~s~~w~~~~~~~~d~~aFLFsl~~~~~~~~~P~k 136 (232)
..+|+|||++++||+|.++||++|+++ +|||+|||++++.|||||++++|.....|+++.++|||++.+.. .+
T Consensus 22 ~~~~~llyss~~~G~s~~~~~~~~~~~~~P~lliik~~~~~ifGaf~~~~w~~~~~~~G~~~sFLF~l~p~~------~~ 95 (165)
T smart00584 22 GYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTLLIIKDTDGEVFGAYASQAWRVSDHFYGTGESFLFQLNPKF------VV 95 (165)
T ss_pred CCCeEEEEEcCcCCccHHHHHHHhcccCCCEEEEEEeCCCCEEEEEcCCCCccCCcEECCCCeEEEEEcCCc------eE
Confidence 346999999999999999999999985 57999999999999999999999999999999999999998653 36
Q ss_pred eeecCCCC-ceEEeCCCCCcccCCCCCccCCCCCCcCCCCCCCCCCCCCCCCcceeecCCcccccCCCCCccccCCCCce
Q 026848 137 LPKIGGSG-AALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDDSRA 215 (232)
Q Consensus 137 ~~~~~~~~-~ai~~~~~~gp~FG~~dL~I~~~l~~~~G~f~G~Dl~~~~~~~~~s~S~lG~tY~~~p~g~~s~lag~~~F 215 (232)
++..+.+. ++++...+..+..|+.+ |..|..+ ++...+.+.-..||+. ..+..++.+|
T Consensus 96 y~~~~~n~~~~~~~~~~~~~~Ggg~g---------------~~~l~id-~~l~~g~s~~~~tf~~-----~~L~~~~~~f 154 (165)
T smart00584 96 YDWTGKNKYYYINGTPDSLPIGGGGG---------------GFGLWID-EDLNHGSSSHCKTFGN-----PPLSTKQEDF 154 (165)
T ss_pred EcccccCcEEEEecCCCeEeecCCCC---------------ceeEEEe-hhhCCeEeCCCCCcCC-----ccccCCCCCE
Confidence 77666554 77777666555544311 1122222 2344455555578853 3355567899
Q ss_pred eEeEEEEeec
Q 026848 216 TLEEVLVFCS 225 (232)
Q Consensus 216 ~V~EiEVf~~ 225 (232)
+|.+||||..
T Consensus 155 ~I~~iEVw~~ 164 (165)
T smart00584 155 LILDIEVWGF 164 (165)
T ss_pred EEEEEEEEec
Confidence 9999999963
No 3
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=99.81 E-value=9e-20 Score=167.51 Aligned_cols=144 Identities=21% Similarity=0.332 Sum_probs=112.1
Q ss_pred CceeEEEEeecccCCcHHHHHHhccCCCCEEEEEEeCCCCeEEeecCCCCCCCCCccCCCceEEEEEeCCCCCCCCCeee
Q 026848 58 GRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPITL 137 (232)
Q Consensus 58 ~~~~~LlY~as~dGfs~~~Fh~~cd~kGptl~iiks~~g~VFGgY~s~~w~~~~~~~~d~~aFLFsl~~~~~~~~~P~k~ 137 (232)
..+|+|||..+.||-|..+|.-+..++||||+||++++|+|||||+|++|....+|++|.+||||+|.++.. .+
T Consensus 232 r~~wr~lysss~~gqsfSt~l~~~~~~gp~v~vI~d~d~~vFGgyASq~we~~pQF~Gd~~~fLfqL~Pkma------~y 305 (427)
T KOG2557|consen 232 RVEWKLLYSSSVHGQSFSTFLGHTSGMGPSVLIIKDTEGYVFGGYASQPWERYPQFYGDMKSFLFQLNPKMA------IY 305 (427)
T ss_pred hhceeeeeeecccccchhhhhhhccCCCCeEEEEEcCCCceecccccCcccccCccCCccceeeeeecchhe------ee
Confidence 467999999999999999999999999999999999999999999999999999999999999999999762 34
Q ss_pred eecCCCCceEEeCCCCCcccCCCCCccCCCCCCcCCC---CCCCCCCCCCCCCcceeecCCcccccCCCCCccccCCCCc
Q 026848 138 PKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGG---FAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDDSR 214 (232)
Q Consensus 138 ~~~~~~~~ai~~~~~~gp~FG~~dL~I~~~l~~~~G~---f~G~Dl~~~~~~~~~s~S~lG~tY~~~p~g~~s~lag~~~ 214 (232)
...+-+...+|. .|++. .|+++|+ ||| |-|.++....++..+- ..+.||+ ..-|+-+.+
T Consensus 306 ~aTgyn~~yqyl------N~~QQ--tiPNGLG--mGGq~n~fgL~Id~sFg~Gqs~--e~cTty~------spqLSk~~~ 367 (427)
T KOG2557|consen 306 RATGYNTNYQYL------NFTQQ--TIPNGLG--MGGQINHFGLFIDASFGQGQSF--ECCTTYE------SPQLSKTSR 367 (427)
T ss_pred cccCCccceEEe------ccccc--cCCCccc--cCcccceeeEEEEeecCCCccc--cccccCC------Ccccccccc
Confidence 444444444443 34432 5666554 887 5577766555555432 2236784 235777889
Q ss_pred eeEeEEEEeec
Q 026848 215 ATLEEVLVFCS 225 (232)
Q Consensus 215 F~V~EiEVf~~ 225 (232)
|+++-||||.-
T Consensus 368 fqi~~iEvWav 378 (427)
T KOG2557|consen 368 FQIEVIEVWAV 378 (427)
T ss_pred ccceEEEEEec
Confidence 99999999974
No 4
>KOG2372 consensus Oxidation resistance protein [Replication, recombination and repair]
Probab=99.76 E-value=2.6e-18 Score=149.55 Aligned_cols=141 Identities=19% Similarity=0.310 Sum_probs=116.7
Q ss_pred ceeEEEEeecccCCcHHHHHHhc-cCCCCEEEEEEeCCCCeEEeecCCCCCCCCCccCCCceEEEEEeCCCCCCCCCeee
Q 026848 59 RELKCCYKATIDGFSATNFHSCC-DFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPITL 137 (232)
Q Consensus 59 ~~~~LlY~as~dGfs~~~Fh~~c-d~kGptl~iiks~~g~VFGgY~s~~w~~~~~~~~d~~aFLFsl~~~~~~~~~P~k~ 137 (232)
..|+|+|++.+||+|.++|+++| ....|.|+|||+.+|+|||||.+......+.|++++++|||+..+.. ++..+
T Consensus 99 ~pW~liyst~~hG~Sl~TlY~~~~~~~~p~lLvird~dg~vFGa~~~~~i~p~dhyyGtgetFLft~~~~~----e~~vy 174 (241)
T KOG2372|consen 99 TPWRLIYSTEKHGFSLRTLYRSMAELDEPVLLVIRDTDGDVFGAFVSDAIRPNDHYYGTGETFLFTFFPGR----EFKVY 174 (241)
T ss_pred cchhhhcccccccccHHHHHHhhhcccCcEEEEEEcCCCCEeeEeeccceeccCCcCCCCCeEEEEecCCC----ceeEe
Confidence 37999999999999999999998 45579999999999999999999999999999999999999999864 56789
Q ss_pred eecCCCCceEEeCCCCCcccCCCCCccCCCCCCcCCCCCCCCCCCCCCCCcceeecCCcccccCCCCCccccCCCCceeE
Q 026848 138 PKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDDSRATL 217 (232)
Q Consensus 138 ~~~~~~~~ai~~~~~~gp~FG~~dL~I~~~l~~~~G~f~G~Dl~~~~~~~~~s~S~lG~tY~~~p~g~~s~lag~~~F~V 217 (232)
++.|.+.+.|++..+ ...||+.+=+. |.+|. +++-.+.|+.+.||+ +..|+.+++|.|
T Consensus 175 ~~TG~n~f~i~c~~d-fLa~G~GgGRf------------gLwLD---~dL~~G~S~~ceTFg------N~~Ls~~qdF~I 232 (241)
T KOG2372|consen 175 RWTGDNSFFIYCDKD-FLAFGGGGGRF------------GLWLD---GDLLHGSSHPCETFG------NEPLSDKQDFII 232 (241)
T ss_pred eecCCcceEEEechh-HhhhcCCCCce------------EEEec---ccccccccCCCcccC------CcccCCcCceEE
Confidence 999999999998643 45777543222 22222 344566777778995 678889999999
Q ss_pred eEEEEeec
Q 026848 218 EEVLVFCS 225 (232)
Q Consensus 218 ~EiEVf~~ 225 (232)
.+||||..
T Consensus 233 q~lElW~f 240 (241)
T KOG2372|consen 233 QDLELWGF 240 (241)
T ss_pred EEEEEEee
Confidence 99999964
No 5
>COG5142 OXR1 Oxidation resistance protein [DNA replication, recombination, and repair]
Probab=99.46 E-value=2.5e-13 Score=114.51 Aligned_cols=141 Identities=20% Similarity=0.272 Sum_probs=108.8
Q ss_pred ceeEEEEeecccCCcHHHHHHhcc-CC-----CCEEEEEEeCCCCeEEeecCCCCCCCCCccCCCceEEEEEeCCC--CC
Q 026848 59 RELKCCYKATIDGFSATNFHSCCD-FK-----GPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNN--GK 130 (232)
Q Consensus 59 ~~~~LlY~as~dGfs~~~Fh~~cd-~k-----Gptl~iiks~~g~VFGgY~s~~w~~~~~~~~d~~aFLFsl~~~~--~~ 130 (232)
.+|+|||+...||+|.++|...|. ++ +..|+++++++|.|||+|.+.-......|++.+++|||++.+.. ..
T Consensus 57 t~W~llySl~~~G~Sl~t~y~~~~~~~~~frrvg~VLa~rd~dgd~FGaf~~d~~~pa~hy~G~~e~FLwk~~~~p~~~~ 136 (212)
T COG5142 57 TSWRLLYSLFENGFSLRTFYESFGENEWPFRRVGFVLACRDKDGDLFGAFFEDRIRPARHYYGRDEMFLWKAARRPADRL 136 (212)
T ss_pred HHHHHHHHHhhcchhHHHHHHHhCcccCcccCceEEEEEEcCCCCEeeeechhheeccCCCCCCccEEEEeeccCCcccc
Confidence 479999999999999999999994 33 44999999999999999999999999999999999999995332 11
Q ss_pred -CCCCeeeeecCCCCceEEeCCCCCcccCCCC----CccCCCCCCcCCCCCCCCCCCCCCCCcceeecCCcccccCCCCC
Q 026848 131 -IDDPITLPKIGGSGAALFDYARGGPQFGADG----LLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGK 205 (232)
Q Consensus 131 -~~~P~k~~~~~~~~~ai~~~~~~gp~FG~~d----L~I~~~l~~~~G~f~G~Dl~~~~~~~~~s~S~lG~tY~~~p~g~ 205 (232)
.-+...+|..++++.+||+.+ ....||..+ |.|. +....+.|+...||+
T Consensus 137 ~~k~~~~yp~~g~~~f~iYCt~-~FlafG~g~grygLl~d-------------------~sLl~g~S~p~~tfg------ 190 (212)
T COG5142 137 ADKEVAVYPISGGKGFGIYCTP-DFLAFGCGGGRYGLLID-------------------KSLLDGESHPVETFG------ 190 (212)
T ss_pred CcceeEEeEeecCCceEEEEch-HHhhhcCCCCcEEEEec-------------------CcccccccCCCcccc------
Confidence 113345788899999999964 345777644 3332 234567777777884
Q ss_pred ccccCCCC-ceeEeEEEEeec
Q 026848 206 ESLFGDDS-RATLEEVLVFCS 225 (232)
Q Consensus 206 ~s~lag~~-~F~V~EiEVf~~ 225 (232)
+.+|+... .|.|..+|||..
T Consensus 191 N~~Ls~~g~~f~Iv~lElW~v 211 (212)
T COG5142 191 NCLLSSKGHFFRIVYLELWLV 211 (212)
T ss_pred ccccccCCCceEEEEEEEEee
Confidence 56776443 579999999964
No 6
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=3.4e-07 Score=83.85 Aligned_cols=69 Identities=16% Similarity=0.324 Sum_probs=63.5
Q ss_pred eeEEEEeecccCCcHHHHHHhccCCCCEEEEEEeCCCCeEEeecCCCCCCCC------CccCCCceEEEEEeCCC
Q 026848 60 ELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTD------DYYDTFDAFLFYWTDNN 128 (232)
Q Consensus 60 ~~~LlY~as~dGfs~~~Fh~~cd~kGptl~iiks~~g~VFGgY~s~~w~~~~------~~~~d~~aFLFsl~~~~ 128 (232)
+.-|||++-.||+|...|+-.|.+..||+++|||-...|.|+|.+..|..++ +++++++||+|.|.+..
T Consensus 365 qplllfsslqhgyslarfyfqcegheptllliktmqkevcgaylstdwsernkfggklgffgtgecfvfrlqpev 439 (559)
T KOG2801|consen 365 QPLLLFSSLQHGYSLARFYFQCEGHEPTLLLIKTMQKEVCGAYLSTDWSERNKFGGKLGFFGTGECFVFRLQPEV 439 (559)
T ss_pred hHHHHHHHhhcchhhhhheeeccCCCCeeehHHHHHHHHhhHhcccchhhhcccCceecccccccEEEEEechhh
Confidence 4567999999999999999999999999999999999999999999999864 57899999999999764
No 7
>KOG4636 consensus Uncharacterized conserved protein with TLDc domain [Function unknown]
Probab=98.06 E-value=3e-05 Score=72.66 Aligned_cols=92 Identities=17% Similarity=0.295 Sum_probs=70.1
Q ss_pred ceeEEEEeecccCCcHHHHHHhc-cCCCCEEEEEEeCCCCeEEeecCCCCCCCCCccCCCceEEEEEeCCCCCCCCCeee
Q 026848 59 RELKCCYKATIDGFSATNFHSCC-DFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPITL 137 (232)
Q Consensus 59 ~~~~LlY~as~dGfs~~~Fh~~c-d~kGptl~iiks~~g~VFGgY~s~~w~~~~~~~~d~~aFLFsl~~~~~~~~~P~k~ 137 (232)
..|+|||++-.||-.++.|+..+ +.+||||||+.|.++++.--=.++.|..++..++-...=+|++.++-
T Consensus 297 shwtlLY~S~~HG~g~NRf~~~V~gYrgPtlvi~~tkder~~viA~~qew~e~~~~fgG~~~~~f~i~P~f--------- 367 (483)
T KOG4636|consen 297 SHWTLLYTSLQHGIGTNRFETLVFGYRGPTLVIFRTKDERVVVIAADQEWRESGNRFGGTFTSFFEIVPNF--------- 367 (483)
T ss_pred CceeecchhhhhccchhhHHHHhccccCCeEEEEEecCCcEEEEeechhhhhhccccccccceeEEeecce---------
Confidence 45999999999999999999998 56799999999999998888889999998866655555568888753
Q ss_pred eecCCCCceEEeCC-----CCCcccCC
Q 026848 138 PKIGGSGAALFDYA-----RGGPQFGA 159 (232)
Q Consensus 138 ~~~~~~~~ai~~~~-----~~gp~FG~ 159 (232)
.....+...+|++- -+|..||+
T Consensus 368 ~~~~~s~N~~Y~nl~~rg~p~Gl~fg~ 394 (483)
T KOG4636|consen 368 RRIDGSANSIYCNLKLRGSPYGLSFGN 394 (483)
T ss_pred EEecCCCceEEEeccccCCccceecCC
Confidence 22233345566542 34556665
No 8
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=31.56 E-value=24 Score=22.58 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=18.2
Q ss_pred CCEEEEEEeCCCCeEEeecCCCCCCCCCccCCCceEEEEEeCC
Q 026848 85 GPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDN 127 (232)
Q Consensus 85 Gptl~iiks~~g~VFGgY~s~~w~~~~~~~~d~~aFLFsl~~~ 127 (232)
+.+.+.+....=.||||+.... ..-++.++|.+..+
T Consensus 4 ~h~~~~~~~~~i~v~GG~~~~~-------~~~~d~~~~d~~~~ 39 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGGRDSSG-------SPLNDLWIFDIETN 39 (49)
T ss_dssp S-EEEEE-TTEEEEE--EEE-T-------EE---EEEEETTTT
T ss_pred eEEEEEEeCCeEEEECCCCCCC-------cccCCEEEEECCCC
Confidence 4566666545568999999865 22345677766554
No 9
>PF15050 SCIMP: SCIMP protein
Probab=30.08 E-value=24 Score=28.59 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=27.7
Q ss_pred cccccccCCCCCCCCCCCCCcccceeeecCCCc
Q 026848 15 NSLFGWNTGKKNSDEKPQAQPKIKYHEVDLPFS 47 (232)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~ 47 (232)
-||-+.-..|+.++..+.|+||..|-+|++|-.
T Consensus 96 YS~vnk~r~kk~vsipsyiePe~DYDDVeipa~ 128 (133)
T PF15050_consen 96 YSLVNKVRNKKTVSIPSYIEPENDYDDVEIPAN 128 (133)
T ss_pred hhhhHhhccceeeccccccCccccccccccccc
Confidence 466777677888999999999999999999843
No 10
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=24.91 E-value=1.2e+02 Score=28.23 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=38.2
Q ss_pred EEEeCCCCeEEeecCCCCCC-CCCccCCCceEEEEEeCCCCCCCCCeeeeecCCCCceEEeCCCCCcccCCC
Q 026848 90 IGHTNKSLKFGAFNPEGYRS-TDDYYDTFDAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGGPQFGAD 160 (232)
Q Consensus 90 iiks~~g~VFGgY~s~~w~~-~~~~~~d~~aFLFsl~~~~~~~~~P~k~~~~~~~~~ai~~~~~~gp~FG~~ 160 (232)
+++...=+|||||+..-=.- .+-|.-|+.++++++..... |.|--...++++... .....||+.
T Consensus 247 fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~G------k~P~aRRRqC~~v~g-~kv~LFGGT 311 (392)
T KOG4693|consen 247 FVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRG------KYPSARRRQCSVVSG-GKVYLFGGT 311 (392)
T ss_pred EEEcceEEEecccchhhhhhhcceeecccccchheeeeccC------CCCCcccceeEEEEC-CEEEEecCC
Confidence 33434448999998753222 34567789999999887662 333322334555542 445678874
No 11
>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3.1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.
Probab=20.72 E-value=35 Score=28.74 Aligned_cols=11 Identities=55% Similarity=1.356 Sum_probs=8.2
Q ss_pred ceeccCCc-cee
Q 026848 2 AFCISNSA-IWK 12 (232)
Q Consensus 2 ~~~~~~~~-~~~ 12 (232)
.||||||- ||.
T Consensus 100 GFcIP~S~NTwE 111 (157)
T PF05351_consen 100 GFCIPNSTNTWE 111 (157)
T ss_dssp EEE-TTCEEEEE
T ss_pred eeEcCCCcccee
Confidence 58999997 776
Done!