Query 026848
Match_columns 232
No_of_seqs 182 out of 549
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 23:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4acj_A WU\:FB25H12 protein,; i 99.9 5.7E-27 2E-31 195.2 13.1 136 58-225 26-166 (167)
2 3gqq_A Protein UNC-119 homolog 18.6 31 0.0011 28.8 0.6 12 1-12 134-146 (195)
3 3t5g_B Retinal ROD rhodopsin-s 18.2 23 0.00077 28.5 -0.3 11 2-12 97-108 (152)
4 3bqa_A Sensor protein PHOQ; hi 13.8 93 0.0032 24.8 2.2 27 80-106 35-61 (148)
5 4goj_C Protein UNC-119 homolog 10.8 67 0.0023 27.6 0.6 11 2-12 180-191 (240)
6 2f01_A Streptavidin; protein/l 7.4 7.6E+02 0.026 18.7 5.9 24 83-106 12-35 (127)
7 1hq8_A NKG2-D; homodimer, CIS- 6.6 1.2E+02 0.0041 21.6 0.3 34 64-97 17-50 (123)
8 3ic4_A Glutaredoxin (GRX-1); s 5.7 97 0.0033 20.7 -0.7 29 75-107 57-86 (92)
9 3lvj_C Sulfurtransferase TUSA; 5.5 3.9E+02 0.013 18.2 2.5 54 37-94 13-70 (82)
10 3bdw_A Natural killer cells an 5.4 1.2E+02 0.004 21.5 -0.4 35 63-97 15-49 (123)
No 1
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio}
Probab=99.94 E-value=5.7e-27 Score=195.19 Aligned_cols=136 Identities=15% Similarity=0.315 Sum_probs=114.1
Q ss_pred CceeEEEEeecccCCcHHHHHHhccCC-CCEEEEEEeCCCCeEEeecCCCCCCCCCccCCCceEEEEEeCCCCCCCCCee
Q 026848 58 GRELKCCYKATIDGFSATNFHSCCDFK-GPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPIT 136 (232)
Q Consensus 58 ~~~~~LlY~as~dGfs~~~Fh~~cd~k-Gptl~iiks~~g~VFGgY~s~~w~~~~~~~~d~~aFLFsl~~~~~~~~~P~k 136 (232)
..+|+|||++++||+|.++||++|+++ ||||+|||+++|+|||||++++|.....|+++.+||||++.+.. .+
T Consensus 26 ~~~w~LlYss~~hG~S~~~~~~~~~~~~~ptllvik~~~g~vFGaf~s~~w~~~~~~~G~~~sFLF~l~p~~------~~ 99 (167)
T 4acj_A 26 GYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQIFGALASEPFKVSEGFYGTGETFLFTFYPEF------EA 99 (167)
T ss_dssp TCCCEEEEEHHHHCSCHHHHHHHHTTCCSCEEEEEEETTSCEEEEEESSCCCCCSSCBCCTTCEEEECSSSC------EE
T ss_pred cCCCeEEEEeccCCccHHHHHHHhcCCCCCEEEEEEcCCceEEEEEeCCcccccCcccCCCCeEEEEEcCCC------cc
Confidence 568999999999999999999999995 99999999999999999999999999999999999999998754 47
Q ss_pred eeecCCCCceEEeCCCCCcccCCC----CCccCCCCCCcCCCCCCCCCCCCCCCCcceeecCCcccccCCCCCccccCCC
Q 026848 137 LPKIGGSGAALFDYARGGPQFGAD----GLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDD 212 (232)
Q Consensus 137 ~~~~~~~~~ai~~~~~~gp~FG~~----dL~I~~~l~~~~G~f~G~Dl~~~~~~~~~s~S~lG~tY~~~p~g~~s~lag~ 212 (232)
++..+.+.+.++... .+..||+. +|.|+ ++...+.|.-+.||. +..|+++
T Consensus 100 y~~tg~N~~f~~~~~-~~l~~Ggg~g~~~L~id-------------------~~l~~G~s~~c~Tf~------n~~L~~~ 153 (167)
T 4acj_A 100 YKWTGDNLFFIKGDM-DSLAFGGGSGEFGLWLD-------------------GDLYHGRNHSCKTFG------NPMLSMK 153 (167)
T ss_dssp EECCSSCCCCEEEET-TEEEESCSSSSCSEEEE-------------------TTSCEEEECCBTTTT------BCCSSSS
T ss_pred ccccCCCceEEEeCC-CccccCCCCCceEEEEe-------------------CCCCCEEeCCCCCCC------CcccCCC
Confidence 887777778887763 57788874 23332 345667777778995 3457778
Q ss_pred CceeEeEEEEeec
Q 026848 213 SRATLEEVLVFCS 225 (232)
Q Consensus 213 ~~F~V~EiEVf~~ 225 (232)
.+|+|.+||||..
T Consensus 154 ~~F~i~~vEvW~~ 166 (167)
T 4acj_A 154 EDFFVQDIEIWSF 166 (167)
T ss_dssp SEEEEEEEEEEEC
T ss_pred CceEEEEEEEEEE
Confidence 8999999999964
No 2
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=18.59 E-value=31 Score=28.76 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=9.2
Q ss_pred CceeccCCc-cee
Q 026848 1 MAFCISNSA-IWK 12 (232)
Q Consensus 1 ~~~~~~~~~-~~~ 12 (232)
+.||||||- ||.
T Consensus 134 FGFcIP~StNTWE 146 (195)
T 3gqq_A 134 FGFCIPSSKNTCE 146 (195)
T ss_dssp CCCBCTTSEEEEE
T ss_pred eeeEcCCCCccce
Confidence 468999987 665
No 3
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=18.24 E-value=23 Score=28.54 Aligned_cols=11 Identities=45% Similarity=1.017 Sum_probs=8.9
Q ss_pred ceeccCCc-cee
Q 026848 2 AFCISNSA-IWK 12 (232)
Q Consensus 2 ~~~~~~~~-~~~ 12 (232)
.||||||- ||.
T Consensus 97 GF~IP~StNTWe 108 (152)
T 3t5g_B 97 GFVIPNSTNTWQ 108 (152)
T ss_dssp EEECTTEEEEEE
T ss_pred eeEcCCCCcccc
Confidence 58999987 776
No 4
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=13.85 E-value=93 Score=24.78 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=20.2
Q ss_pred hccCCCCEEEEEEeCCCCeEEeecCCC
Q 026848 80 CCDFKGPCVIIGHTNKSLKFGAFNPEG 106 (232)
Q Consensus 80 ~cd~kGptl~iiks~~g~VFGgY~s~~ 106 (232)
..+...|||++|++++|.+.=.=...+
T Consensus 35 n~~~n~ptLvlIYDe~G~lLW~qr~vP 61 (148)
T 3bqa_A 35 NIDKQSPTMTLIYDENGQLLWAQRDVP 61 (148)
T ss_dssp HHHTTCSCEEEEECTTSCEEEESSCCH
T ss_pred cccCCCCeEEEEEcCCCcEEEecCcch
Confidence 456778999999999998874444333
No 5
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=10.81 E-value=67 Score=27.56 Aligned_cols=11 Identities=36% Similarity=0.778 Sum_probs=8.6
Q ss_pred ceeccCCc-cee
Q 026848 2 AFCISNSA-IWK 12 (232)
Q Consensus 2 ~~~~~~~~-~~~ 12 (232)
.||||||. ||.
T Consensus 180 GFcIPnS~NTWE 191 (240)
T 4goj_C 180 GFCIPSSKNTCE 191 (240)
T ss_dssp EEECTTCEEEEE
T ss_pred ceeccCCcccce
Confidence 58999987 665
No 6
>2f01_A Streptavidin; protein/ligand interactions, biotin, biotin BI protein; HET: BTN BTQ; 0.85A {Streptomyces avidinii} SCOP: b.61.1.1 PDB: 1swa_A 1swb_A 1swc_A 1swd_A* 1swe_A* 1mk5_A* 2g5l_A* 2gh7_A* 3ry1_A* 3ry2_A* 1i9h_A* 1hqq_A 1hxl_A 1hxz_A 1hy2_A 3t6f_A* 3t6l_A 1swu_A 1ndj_A 1rst_B ...
Probab=7.36 E-value=7.6e+02 Score=18.67 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=20.9
Q ss_pred CCCCEEEEEEeCCCCeEEeecCCC
Q 026848 83 FKGPCVIIGHTNKSLKFGAFNPEG 106 (232)
Q Consensus 83 ~kGptl~iiks~~g~VFGgY~s~~ 106 (232)
..|.+++|..+.+|.|-|-|.+..
T Consensus 12 qlGS~m~I~~~~~G~i~G~Y~Tav 35 (127)
T 2f01_A 12 QLGSTFIVTAGADGALTGTYESAV 35 (127)
T ss_dssp TTCCEEEEEECTTSEEEEEEECSS
T ss_pred CCCCEEEEEECCCCEEEEEEeccc
Confidence 458999999988899999998875
No 7
>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus} SCOP: d.169.1.1 PDB: 1jsk_A 1kcg_A*
Probab=6.59 E-value=1.2e+02 Score=21.56 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=26.9
Q ss_pred EEeecccCCcHHHHHHhccCCCCEEEEEEeCCCC
Q 026848 64 CYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSL 97 (232)
Q Consensus 64 lY~as~dGfs~~~Fh~~cd~kGptl~iiks~~g~ 97 (232)
+|+-+.+..+-..=.+.|...|..|+.|++...+
T Consensus 17 CY~~~~~~~~w~~A~~~C~~~g~~La~i~s~~e~ 50 (123)
T 1hq8_A 17 CYQFFNEEKTWNQSQASCLSQNSSLLKIYSKEEQ 50 (123)
T ss_dssp EEEEEEEEECHHHHHHHHHTTTCEECCCSCTTTT
T ss_pred EEEEeCCccCHHHHHHHHHhcCCEecccCCHHHH
Confidence 5666666677777788899999999999986644
No 8
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=5.68 E-value=97 Score=20.73 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=18.1
Q ss_pred HHHHHhcc-CCCCEEEEEEeCCCCeEEeecCCCC
Q 026848 75 TNFHSCCD-FKGPCVIIGHTNKSLKFGAFNPEGY 107 (232)
Q Consensus 75 ~~Fh~~cd-~kGptl~iiks~~g~VFGgY~s~~w 107 (232)
..+.+... ..=|+|++ +|.+.|||.+..|
T Consensus 57 ~~l~~~~g~~~vP~l~~----~g~~i~G~~~~~l 86 (92)
T 3ic4_A 57 EKVHSISGSYSVPVVVK----GDKHVLGYNEEKL 86 (92)
T ss_dssp HHHHHHHSSSCSCEEEE----TTEEEESCCHHHH
T ss_pred HHHHHhcCCCCcCEEEE----CCEEEeCCCHHHH
Confidence 44444432 45677775 6789999965443
No 9
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=5.48 E-value=3.9e+02 Score=18.16 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=34.3
Q ss_pred cceeeecCCCccccccccccC----CceeEEEEeecccCCcHHHHHHhccCCCCEEEEEEeC
Q 026848 37 IKYHEVDLPFSLSLVDNTFLR----GRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTN 94 (232)
Q Consensus 37 ~~f~~i~~~~~~sLL~~~~l~----~~~~~LlY~as~dGfs~~~Fh~~cd~kGptl~iiks~ 94 (232)
+.-.+...|.|- |.++..+. +..++++- .|.-+..++-+-|...|..++..+..
T Consensus 13 lD~rGl~CP~Pv-l~~kkal~~l~~G~~l~V~~---dd~~a~~di~~~~~~~G~~~~~~~~~ 70 (82)
T 3lvj_C 13 LDALGLRCPEPV-MMVRKTVRNMQPGETLLIIA---DDPATTRDIPGFCTFMEHELVAKETD 70 (82)
T ss_dssp EECTTCCTTHHH-HHHHHHHHTSCTTCEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEECS
T ss_pred EECCCCCCCHHH-HHHHHHHHhCCCCCEEEEEE---CCccHHHHHHHHHHHCCCEEEEEEec
Confidence 333444444333 22344444 44566663 47777889999999999999887643
No 10
>3bdw_A Natural killer cells antigen CD94; NK cells, receptor, glycoprotein, lectin, signal-A transmembrane, immune system receptor; 2.50A {Homo sapiens} SCOP: d.169.1.1 PDB: 3cdg_J 1b6e_A 3cii_G
Probab=5.41 E-value=1.2e+02 Score=21.53 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=28.4
Q ss_pred EEEeecccCCcHHHHHHhccCCCCEEEEEEeCCCC
Q 026848 63 CCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSL 97 (232)
Q Consensus 63 LlY~as~dGfs~~~Fh~~cd~kGptl~iiks~~g~ 97 (232)
-+|+-+.+-.+-..=.+.|...|..|+.|++...+
T Consensus 15 ~CY~~~~~~~~w~~A~~~C~~~g~~La~i~s~~e~ 49 (123)
T 3bdw_A 15 NCYFISSEQKTWNESRHLCASQKSSLLQLQNTDEL 49 (123)
T ss_dssp EEEEECSSCBCHHHHHHHHHHTTCEECCCSCGGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHCCCeeEEECCHHHH
Confidence 46777777778888888899999999999986543
Done!