BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026849
MIMDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHV
LSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKM
AVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQL
KFHWVERYDKLLVGSVLCLVGILTLIFHDHHHHHDSGAVSGVDHSHRKLIVL

High Scoring Gene Products

Symbol, full name Information P value
AT5G21070 protein from Arabidopsis thaliana 3.2e-88

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026849
        (232 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2178948 - symbol:AT5G21070 "AT5G21070" species...   881  3.2e-88   1


>TAIR|locus:2178948 [details] [associations]
            symbol:AT5G21070 "AT5G21070" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 EMBL:AY054240 EMBL:AY079115
            IPI:IPI00527802 RefSeq:NP_197606.1 UniGene:At.23853
            EnsemblPlants:AT5G21070.1 GeneID:832231 KEGG:ath:AT5G21070
            TAIR:At5g21070 InParanoid:Q940N6 OMA:NSSSMMI PhylomeDB:Q940N6
            ProtClustDB:CLSN2687422 Genevestigator:Q940N6 Uniprot:Q940N6
        Length = 225

 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 176/205 (85%), Positives = 183/205 (89%)

Query:     3 MDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLS 62
             MD  +AEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTL VTAFGAVLHV+S
Sbjct:     1 MDTFTAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLLVTAFGAVLHVIS 60

Query:    63 TSLLGITAITMANTIAGEDTVHKXXXXXXXXXXXXXXXXFISGKGGHSHSHNQPMEKMAV 122
             TSLLGITAITMANTIAGE+TVHK                F++GKGGH+HSHNQPMEKMAV
Sbjct:    61 TSLLGITAITMANTIAGEETVHKLASLLLVFLGGSYVLLFLAGKGGHTHSHNQPMEKMAV 120

Query:   123 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKF 182
             AGLVLVPALSPCATTLPVFLAVGNS SMMVLAIIVLL STI VMTSLVALSFYGASQLKF
Sbjct:   121 AGLVLVPALSPCATTLPVFLAVGNSKSMMVLAIIVLLFSTILVMTSLVALSFYGASQLKF 180

Query:   183 HWVERYDKLLVGSVLCLVGILTLIF 207
             HWVERYDKLLVGSVLCLVGILTL+F
Sbjct:   181 HWVERYDKLLVGSVLCLVGILTLLF 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       208   0.00077  112 3  11 22  0.42    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  150 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.58u 0.12s 15.70t   Elapsed:  00:00:00
  Total cpu time:  15.58u 0.12s 15.70t   Elapsed:  00:00:00
  Start:  Sat May 11 08:02:22 2013   End:  Sat May 11 08:02:22 2013

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