BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026849
         (232 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL1 PE=1 SV=3
          Length = 3027

 Score = 30.8 bits (68), Expect = 9.1,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 67   GITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHS---------HSHNQPM 117
            GIT +      +GE+    L  LL  +L   Y+ LFI G   HS         H  N+ M
Sbjct: 2296 GITCLIRLLNSSGEEAQSGLTVLLCEILTAVYLSLFIHGLATHSSNELFRIVAHPLNEKM 2355

Query: 118  EKMAVAGLVLVPALSPC-ATTLPV 140
                  G   VP+     + TLPV
Sbjct: 2356 WSAVFGGGAHVPSKEQTHSKTLPV 2379


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.137    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,976,944
Number of Sequences: 539616
Number of extensions: 2793408
Number of successful extensions: 14467
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 14434
Number of HSP's gapped (non-prelim): 75
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)