Query 026849
Match_columns 232
No_of_seqs 108 out of 120
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 13:36:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10019 nickel/cobalt efflux 99.9 3.1E-25 6.7E-30 200.4 21.8 198 9-207 12-272 (279)
2 COG2215 ABC-type uncharacteriz 99.7 1.7E-14 3.7E-19 131.2 21.2 195 10-205 54-297 (303)
3 PF03824 NicO: High-affinity n 99.5 2.1E-12 4.6E-17 115.9 19.1 162 10-174 1-237 (282)
4 TIGR00802 nico high-affinity n 99.2 6E-11 1.3E-15 107.2 8.9 85 15-99 2-95 (280)
5 PF13386 DsbD_2: Cytochrome C 98.9 6E-08 1.3E-12 83.0 15.8 147 51-202 34-198 (199)
6 PF02683 DsbD: Cytochrome C bi 98.6 1E-05 2.2E-10 69.7 18.2 155 49-204 41-209 (211)
7 COG0785 CcdA Cytochrome c biog 98.1 0.0012 2.6E-08 58.3 20.0 190 13-203 12-218 (220)
8 COG2836 Uncharacterized conser 98.1 0.00032 7E-09 62.3 16.2 168 5-175 1-190 (232)
9 PRK00293 dipZ thiol:disulfide 97.9 0.0016 3.4E-08 64.6 20.2 194 11-206 166-380 (571)
10 PRK11469 hypothetical protein; 97.8 0.0055 1.2E-07 52.8 18.4 180 10-206 3-183 (188)
11 COG3376 HoxN High-affinity nic 97.7 0.00013 2.7E-09 67.2 7.1 93 8-100 46-147 (342)
12 COG1971 Predicted membrane pro 97.6 0.0067 1.5E-07 52.7 16.6 178 9-207 2-186 (190)
13 PF01810 LysE: LysE type trans 96.8 0.11 2.3E-06 43.5 15.5 150 51-205 25-188 (191)
14 PF13795 HupE_UreJ_2: HupE / U 96.7 0.02 4.3E-07 48.1 10.2 137 18-174 2-142 (151)
15 TIGR02840 spore_YtaF putative 96.6 0.17 3.6E-06 44.2 15.8 55 51-106 32-86 (206)
16 PF11139 DUF2910: Protein of u 96.3 0.57 1.2E-05 40.5 17.4 176 20-206 4-210 (214)
17 TIGR00949 2A76 The Resistance 96.2 0.45 9.8E-06 39.6 15.5 150 50-203 19-184 (185)
18 PF03596 Cad: Cadmium resistan 96.1 0.22 4.7E-06 43.3 13.6 148 45-207 24-181 (191)
19 PRK09304 arginine exporter pro 95.8 1.1 2.4E-05 38.4 18.0 183 13-206 4-200 (207)
20 PF03824 NicO: High-affinity n 95.5 0.044 9.6E-07 49.3 7.1 24 151-174 176-199 (282)
21 COG4300 CadD Predicted permeas 95.2 0.025 5.5E-07 49.1 4.2 138 57-209 41-195 (205)
22 PRK10520 rhtB homoserine/homos 95.1 1.3 2.8E-05 37.7 14.6 28 178-205 174-201 (205)
23 PF02683 DsbD: Cytochrome C bi 94.9 0.2 4.3E-06 43.1 9.1 77 129-207 8-94 (211)
24 PRK10958 leucine export protei 94.9 2.2 4.8E-05 36.8 18.6 23 182-204 185-207 (212)
25 PRK10323 cysteine/O-acetylseri 94.8 2.3 5E-05 36.2 16.3 22 183-204 172-193 (195)
26 COG1280 RhtB Putative threonin 92.5 6.5 0.00014 34.0 17.9 151 51-206 38-205 (208)
27 PRK11111 hypothetical protein; 92.4 7.1 0.00015 34.3 14.4 19 81-99 76-94 (214)
28 COG4280 Predicted membrane pro 91.7 3.9 8.4E-05 36.3 11.6 181 11-209 3-200 (236)
29 PF01914 MarC: MarC family int 90.2 11 0.00024 32.6 13.2 19 81-99 70-88 (203)
30 TIGR00948 2a75 L-lysine export 89.2 12 0.00025 31.1 14.0 45 52-96 22-71 (177)
31 COG0785 CcdA Cytochrome c biog 88.5 4.2 9.1E-05 35.9 9.4 81 123-205 15-103 (220)
32 PF09323 DUF1980: Domain of un 87.7 4.3 9.3E-05 34.4 8.7 25 81-105 32-56 (182)
33 PF09930 DUF2162: Predicted tr 87.3 21 0.00045 31.8 13.4 23 80-103 67-89 (224)
34 COG2119 Predicted membrane pro 87.1 20 0.00043 31.4 12.9 119 79-207 63-184 (190)
35 PF04955 HupE_UreJ: HupE / Ure 86.2 21 0.00044 30.6 13.4 71 16-96 20-94 (180)
36 PRK10995 inner membrane protei 85.8 24 0.00051 30.9 14.5 18 81-98 74-91 (221)
37 TIGR00145 FTR1 family protein. 85.6 29 0.00063 31.9 15.6 58 39-99 31-95 (283)
38 PRK00293 dipZ thiol:disulfide 85.3 7.2 0.00016 38.9 10.1 81 124-205 172-262 (571)
39 PRK10229 threonine efflux syst 83.0 28 0.0006 29.5 17.6 22 183-204 181-202 (206)
40 TIGR00779 cad cadmium resistan 77.2 1.9 4.1E-05 37.6 2.5 143 49-206 27-180 (193)
41 PF02659 DUF204: Domain of unk 75.7 14 0.00031 26.0 6.3 48 44-95 18-67 (67)
42 TIGR00427 membrane protein, Ma 75.0 55 0.0012 28.4 14.2 19 81-99 73-91 (201)
43 COG4262 Predicted spermidine s 73.5 37 0.00081 33.1 10.2 71 84-166 46-121 (508)
44 PF11139 DUF2910: Protein of u 73.4 32 0.0007 29.5 9.2 81 124-208 3-90 (214)
45 PF14007 YtpI: YtpI-like prote 73.1 9.1 0.0002 29.5 5.0 43 63-105 36-80 (89)
46 PRK10019 nickel/cobalt efflux 73.1 39 0.00084 31.1 10.0 30 178-207 79-108 (279)
47 PF01810 LysE: LysE type trans 72.5 25 0.00054 29.1 8.0 80 130-212 4-85 (191)
48 PRK11469 hypothetical protein; 68.0 11 0.00025 32.3 5.1 30 72-101 153-184 (188)
49 PF01169 UPF0016: Uncharacteri 66.1 26 0.00056 26.0 6.1 48 45-95 31-78 (78)
50 COG2119 Predicted membrane pro 63.3 19 0.00041 31.5 5.5 53 47-103 133-185 (190)
51 PF01102 Glycophorin_A: Glycop 61.8 8.9 0.00019 31.2 3.1 22 85-106 73-94 (122)
52 PF09948 DUF2182: Predicted me 60.6 1.1E+02 0.0025 26.5 9.9 136 49-203 36-189 (191)
53 PF05545 FixQ: Cbb3-type cytoc 58.1 22 0.00049 23.7 4.1 36 156-191 9-44 (49)
54 PF03788 LrgA: LrgA family; I 54.2 35 0.00076 26.3 5.2 34 161-196 18-51 (96)
55 PRK10739 putative antibiotic t 51.5 1.6E+02 0.0035 25.5 13.6 19 81-99 70-88 (197)
56 COG1033 Predicted exporters of 47.8 2.5E+02 0.0055 29.4 11.5 27 72-101 243-269 (727)
57 COG1971 Predicted membrane pro 47.8 42 0.00091 29.3 5.2 20 80-99 165-184 (190)
58 PF03209 PUCC: PUCC protein; 47.1 2.8E+02 0.0061 27.0 15.3 32 149-180 244-275 (403)
59 PF13386 DsbD_2: Cytochrome C 43.9 77 0.0017 26.8 6.2 14 44-57 117-130 (199)
60 PF02659 DUF204: Domain of unk 37.8 1.4E+02 0.003 20.8 6.2 19 183-201 49-67 (67)
61 PF10225 DUF2215: Uncharacteri 33.8 3.5E+02 0.0076 24.2 13.0 44 61-104 14-61 (249)
62 PF04156 IncA: IncA protein; 32.9 1.8E+02 0.0039 24.2 6.7 15 85-99 46-60 (191)
63 PF03189 Otopetrin: Otopetrin; 32.0 2E+02 0.0044 27.9 7.7 17 90-106 187-203 (441)
64 PF08507 COPI_assoc: COPI asso 31.0 1.3E+02 0.0027 24.2 5.2 27 81-107 85-111 (136)
65 PF06724 DUF1206: Domain of Un 30.6 92 0.002 22.2 4.0 26 80-105 46-71 (73)
66 PF09877 DUF2104: Predicted me 29.1 1.6E+02 0.0034 23.3 5.2 46 150-202 4-49 (99)
67 PF01169 UPF0016: Uncharacteri 28.1 1.5E+02 0.0033 21.8 4.8 42 160-201 37-78 (78)
68 PRK01821 hypothetical protein; 26.8 1.7E+02 0.0036 24.1 5.2 14 161-174 38-51 (133)
69 PRK10520 rhtB homoserine/homos 24.3 4.3E+02 0.0093 22.2 10.4 79 127-208 14-94 (205)
70 PF11127 DUF2892: Protein of u 22.7 1.1E+02 0.0024 21.3 3.1 22 183-204 6-27 (66)
71 COG1380 Putative effector of m 22.3 1.8E+02 0.0038 23.8 4.6 28 161-190 34-61 (128)
72 TIGR02896 spore_III_AF stage I 21.7 2.1E+02 0.0047 22.5 4.8 24 182-205 26-49 (106)
73 PRK01658 holin-like protein; V 21.4 2.1E+02 0.0045 23.0 4.8 12 162-173 34-45 (122)
74 COG2370 HupE Hydrogenase/ureas 21.2 5.8E+02 0.013 22.5 11.4 70 17-96 37-111 (201)
75 TIGR00949 2A76 The Resistance 20.9 4.7E+02 0.01 21.3 7.4 52 156-207 22-75 (185)
76 PF03729 DUF308: Short repeat 20.8 2.7E+02 0.0059 18.7 6.0 25 80-104 21-45 (72)
No 1
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=99.94 E-value=3.1e-25 Score=200.42 Aligned_cols=198 Identities=12% Similarity=0.185 Sum_probs=148.9
Q ss_pred hhHHHHHHHHHHhhhhcccCCCchh--hhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc---chhH
Q 026849 9 EDLSTIGGIATVSLLHSFIPTHWLP--FSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG---EDTV 83 (232)
Q Consensus 9 ~~~sil~~gf~Lg~lHAl~PdH~~p--v~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~---~~~~ 83 (232)
..++++..+|..|+.||++|||.++ .+.+..++ -+.+|.+..++.|+++||.+.++++++.+.+.++++. +.++
T Consensus 12 ~~~~l~~~~f~yG~~HAlgPGHGKavi~sYlv~~~-~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l~~~~~~~~~~~~l 90 (279)
T PRK10019 12 NAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIK-GTIKQAVMLGLAATISHTAVVWLIAFGGMYLSRRFTAQSAEPWL 90 (279)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcchHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 5678999999999999999999999 44566444 4899999999999999999999999998888888883 7889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-------CCCCCCCC--C-----------------------cc--h-------hH--
Q 026849 84 HKLASLLLVVLGGSYILLFISGK-------GGHSHSHN--Q-----------------------PM--E-------KM-- 120 (232)
Q Consensus 84 e~~vG~~LI~lG~~yl~~~~~~~-------~~h~H~H~--~-----------------------~~--~-------k~-- 120 (232)
|.+++++++++|+|.++|..|++ ..|+|+|+ | |+ + |.
T Consensus 91 e~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~~~~~~~~a~~~r~~~ 170 (279)
T PRK10019 91 QLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDAHERAHANDIKRRF 170 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCCCHHHhhccchhhhhh
Confidence 99999999999998886555442 11122211 0 11 0 01
Q ss_pred --------HHHHHHHhhccccchhHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchhHHHHH
Q 026849 121 --------AVAGLVLVPALSPCATTLPVFLAVGNSS--SMMVLAIIVLLLSTITVMTSLVALSFYGAS--QLKFHWVERY 188 (232)
Q Consensus 121 --------~~~~Lv~~l~lsPc~a~lpl~L~a~~~~--~~~~lyilvF~~gti~gM~~~t~l~~~g~~--~~~~~~~ery 188 (232)
.++.+++..++.||++.+.+++.+.+.+ +.+++|++.|++||+++|+++..+...+.+ ..+..+.+|+
T Consensus 171 ~~~~~~~~~~l~igl~~Gl~PCpgAl~VLL~a~~lg~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~ 250 (279)
T PRK10019 171 DGREVTNGQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTL 250 (279)
T ss_pred cccccccchhhHHHHHhccCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 1235666689999976665444333433 889999999999999999999998854443 2223345566
Q ss_pred HH---HHHHHHHHHHhhhhhhc
Q 026849 189 DK---LLVGSVLCLVGILTLIF 207 (232)
Q Consensus 189 ~~---~i~G~v~i~~Gi~~~~~ 207 (232)
.+ .++|++++++|+.....
T Consensus 251 ~~~~p~~s~~l~i~~G~~~~~~ 272 (279)
T PRK10019 251 ARRAPYFSSLLIGLVGVYMGVH 272 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 56 99999999999876543
No 2
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=99.66 E-value=1.7e-14 Score=131.16 Aligned_cols=195 Identities=21% Similarity=0.247 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHhhhhcccCCCchhhhh--hccccCccchhHHHHHHHHhhhHHHH--HHHHHHHHHHHHhhcc---cchh
Q 026849 10 DLSTIGGIATVSLLHSFIPTHWLPFSI--VGRAQKWTLSRTLFVTAFGAVLHVLS--TSLLGITAITMANTIA---GEDT 82 (232)
Q Consensus 10 ~~sil~~gf~Lg~lHAl~PdH~~pv~~--i~~~~kws~~rtl~~~~~~GlGHtls--~~llGl~~i~lg~~i~---~~~~ 82 (232)
.++++..+|+.|+.||++|+|.+.+.+ +. ++|-.++|.+..++...+-|.++ .++.+...++.+..+. -+.+
T Consensus 54 ~w~li~~SflyGvlHAlgPGHgKaviasyli-a~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~ 132 (303)
T COG2215 54 GWTLIPLSFLYGVLHALGPGHGKAVIATYLI-AHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPW 132 (303)
T ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHH-hcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHH
Confidence 478999999999999999999999662 33 45558899999999999999444 4444444444444444 2678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC----C-----------CCCCC--------CC-cchh--------HHHHHHHHhhc
Q 026849 83 VHKLASLLLVVLGGSYILLFISGKG----G-----------HSHSH--------NQ-PMEK--------MAVAGLVLVPA 130 (232)
Q Consensus 83 ~e~~vG~~LI~lG~~yl~~~~~~~~----~-----------h~H~H--------~~-~~~k--------~~~~~Lv~~l~ 130 (232)
+|..+..+++.+|+|.++|.+|+.+ . |+|.| .| |+.| ...+..++..+
T Consensus 133 lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~~~~~~~~~~~~~~~l~~G 212 (303)
T COG2215 133 LELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKRLGQAVDWKQQWLFGLTGG 212 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHHhcccccHHHHHHHHHHhc
Confidence 8999999999999998866666411 0 11221 12 2211 13346677789
Q ss_pred cccchhHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hccchhHHHHHHHHHHHHHHHHH
Q 026849 131 LSPCATTLPVFLAVGNSS--SMMVLAIIVLLLSTITVMTSLVALSFYGA--------SQLKFHWVERYDKLLVGSVLCLV 200 (232)
Q Consensus 131 lsPc~a~lpl~L~a~~~~--~~~~lyilvF~~gti~gM~~~t~l~~~g~--------~~~~~~~~ery~~~i~G~v~i~~ 200 (232)
+-||++.+-+++.+.+++ ..++++++.+++||.++...+..+..... .+..-+++.+..+++.|++.+.+
T Consensus 213 LrPCpgAi~VLlfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~~l~~gli~l~~ 292 (303)
T COG2215 213 LRPCPGAIFVLLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRISYIVSLLGGLIGLYF 292 (303)
T ss_pred CccCcHHHHHHHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887777666666 77999999999999999777777655321 11123455566678888888888
Q ss_pred hhhhh
Q 026849 201 GILTL 205 (232)
Q Consensus 201 Gi~~~ 205 (232)
|+...
T Consensus 293 g~~~l 297 (303)
T COG2215 293 GLHLL 297 (303)
T ss_pred HHHHH
Confidence 87654
No 3
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.50 E-value=2.1e-12 Score=115.93 Aligned_cols=162 Identities=21% Similarity=0.191 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhhhhcccCCCchhhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-------chh
Q 026849 10 DLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG-------EDT 82 (232)
Q Consensus 10 ~~sil~~gf~Lg~lHAl~PdH~~pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~-------~~~ 82 (232)
.++++..+|.+|++||++|||.+++..- ...+.+++.+.++.||+||+++..+.+++++.+...++. .+.
T Consensus 1 ~l~ll~laf~~G~~HAl~PgH~kai~~~---~~~~~~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~~~~~~~~~~~ 77 (282)
T PF03824_consen 1 LLSLLLLAFLYGLLHALGPGHGKAIIAS---YLLSSRRALRVGLFFGLGHSLTHGLSAILLVLLALWLSELSSFADVGSA 77 (282)
T ss_pred CHHHHHHHHHHHHHHccCCChHHHHHHH---HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHhhH
Confidence 3688999999999999999999998431 112334456778889999999888888888666655443 222
Q ss_pred H--HH-HHHHHHHHHHHHHHHHHHhccC-------C------CC------CCC---------CCc------c--------
Q 026849 83 V--HK-LASLLLVVLGGSYILLFISGKG-------G------HS------HSH---------NQP------M-------- 117 (232)
Q Consensus 83 ~--e~-~vG~~LI~lG~~yl~~~~~~~~-------~------h~------H~H---------~~~------~-------- 117 (232)
. +. .+.++++.+|.+.++++.++.+ . |. |+| +++ .
T Consensus 78 ~~~~~~~~~llv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~g~~ 157 (282)
T PF03824_consen 78 VGLLVSGSFLLVIGIGNWLLLRRLRHLHRHLRRGHQHAHSHDHAHHHHGDHGHFHHPHHHHHSHHHHHDHVGHLFGLGFD 157 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhcccccccCCCcccccccccccccccc
Confidence 2 33 4556666667766665544321 0 00 000 000 0
Q ss_pred --------------------hhHHHHHHHHhhccccchhHHHHHHHhcchh--hHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 026849 118 --------------------EKMAVAGLVLVPALSPCATTLPVFLAVGNSS--SMMVLAIIVLLL-STITVMTSLVALSF 174 (232)
Q Consensus 118 --------------------~k~~~~~Lv~~l~lsPc~a~lpl~L~a~~~~--~~~~lyilvF~~-gti~gM~~~t~l~~ 174 (232)
++....++....++.||+..+-+++.+...+ ..+..+...+++ |+.+.+.++..+..
T Consensus 158 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Gm~p~~~a~~vl~~~~~~~~~~~g~~~~~~~~l~g~~i~~~~~~~~~~ 237 (282)
T PF03824_consen 158 TASCGHLHGLSAAALPGAPISWILLLGLGFAAGMVPCPGALGVLLFALYLGAFWAGRAAVLAMSLGGMAITVALFAGLAV 237 (282)
T ss_pred ccchhcccccccccccCCCchHHHHHHHHHHhhccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123335555579999999987777555544 445666677888 77777777766554
No 4
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=99.20 E-value=6e-11 Score=107.15 Aligned_cols=85 Identities=15% Similarity=0.090 Sum_probs=68.0
Q ss_pred HHHHHHhhhhcccCCCchhhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc--------chhH-HH
Q 026849 15 GGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG--------EDTV-HK 85 (232)
Q Consensus 15 ~~gf~Lg~lHAl~PdH~~pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~--------~~~~-e~ 85 (232)
..++++|++||+||||..++..+.|+.--+.+|....|++|++||+.+.++..+++..-...++. ...+ ..
T Consensus 2 ~la~~lGlrHA~DaDHiaAId~~trkl~~~~~~~~~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~iGt~ 81 (280)
T TIGR00802 2 LLAYVLGLRHAFDADHIAAIDNTTRKLMQQGRRPLGVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGLIGTL 81 (280)
T ss_pred hHHHHhhhhccCCcchhhhhHHHHHHHhhcCCCceeeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccceeeHH
Confidence 46899999999999999999999987634778889999999999999999888776544333321 1223 37
Q ss_pred HHHHHHHHHHHHHH
Q 026849 86 LASLLLVVLGGSYI 99 (232)
Q Consensus 86 ~vG~~LI~lG~~yl 99 (232)
+++..|+++|+.++
T Consensus 82 VS~~FL~~ig~~Nl 95 (280)
T TIGR00802 82 VSALFLLIIALLNL 95 (280)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999888
No 5
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=98.93 E-value=6e-08 Score=82.99 Aligned_cols=147 Identities=21% Similarity=0.209 Sum_probs=101.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHHHHhccCCCC---CCC-----CCcc-h
Q 026849 51 VTAFGAVLHVLSTSLLGITAITMANTIAG---EDTVHKLASLLLVVLGGSYILLFISGKGGHS---HSH-----NQPM-E 118 (232)
Q Consensus 51 ~~~~~GlGHtls~~llGl~~i~lg~~i~~---~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~---H~H-----~~~~-~ 118 (232)
......+|++++-.++|.++-.+|..++. .+.++..+++.+..+++++.++..++++..+ .++ .++. +
T Consensus 34 ~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~~~~~~~~l~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 113 (199)
T PF13386_consen 34 RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIGILLGLLGLFLGLRLLGGPRLPKLGRLGHGLARRLQPLLR 113 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhccHHHHHHhHHHHH
Confidence 46888999999999999999999988763 2456777777777777765544443221111 000 0111 1
Q ss_pred --hHHHHHHHHh--hccccchhHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 026849 119 --KMAVAGLVLV--PALSPCATTLPVFLAVGNSS--SMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLL 192 (232)
Q Consensus 119 --k~~~~~Lv~~--l~lsPc~a~lpl~L~a~~~~--~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i 192 (232)
+....++.+| .++.||+.+.+.+..+..++ .++.++...|++||+..|+.+..+..+.-+ +.+|....+
T Consensus 114 ~~~~~~~~~~lG~l~gllPCg~~y~~l~~A~~s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~-----~~~~~~~r~ 188 (199)
T PF13386_consen 114 KLKGPWGAFLLGFLNGLLPCGPVYFALALAAASGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSR-----RLRRRLLRL 188 (199)
T ss_pred hcCCccHHHHHHHHHHHhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 2344466666 48889998877666444433 889999999999999999999888776533 333445558
Q ss_pred HHHHHHHHhh
Q 026849 193 VGSVLCLVGI 202 (232)
Q Consensus 193 ~G~v~i~~Gi 202 (232)
.|.+.+++|+
T Consensus 189 ~g~~~i~~G~ 198 (199)
T PF13386_consen 189 AGVLLIILGI 198 (199)
T ss_pred HHHHHHHHHH
Confidence 8999999986
No 6
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=98.56 E-value=1e-05 Score=69.72 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=104.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHHHHh-----ccCCC---CCCCCCcchh
Q 026849 49 LFVTAFGAVLHVLSTSLLGITAITMANTIA-GEDTVHKLASLLLVVLGGSYILLFIS-----GKGGH---SHSHNQPMEK 119 (232)
Q Consensus 49 l~~~~~~GlGHtls~~llGl~~i~lg~~i~-~~~~~e~~vG~~LI~lG~~yl~~~~~-----~~~~h---~H~H~~~~~k 119 (232)
+..++.-..|=.++-.++|.....+++.++ ...++..+.|++++++|+..+ ..+. +.+.. ..+.+.+.-.
T Consensus 41 ~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~~~~~~~~~i~g~~~i~~Gl~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~g 119 (211)
T PF02683_consen 41 LLLGLAFVLGFALVFALLGLGAGALGSFFGQISPWLYIIAGVLLILFGLSLL-GLFEIPFLSRPRLGLRSKRKSGGGLLG 119 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcchhhhhhhhhhhhhcCCCCCccc
Confidence 566666667777888888888888887775 457788999999999999554 2221 11000 0011111223
Q ss_pred HHHHHHHHhhccccchhH--HHHHH-Hhcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Q 026849 120 MAVAGLVLVPALSPCATT--LPVFL-AVGNSS-SMMVLAIIVLLLSTITVMTSLVALSFYGAS-QLKFHWVERYDKLLVG 194 (232)
Q Consensus 120 ~~~~~Lv~~l~lsPc~a~--lpl~L-~a~~~~-~~~~lyilvF~~gti~gM~~~t~l~~~g~~-~~~~~~~ery~~~i~G 194 (232)
+...|+..++.-+||.+- ..++. ++.+++ ..+..+.++|++|-.+-+..+.....+..+ ..+.++..|+.+.+.|
T Consensus 120 af~lG~~~~l~~~PC~~p~l~~il~~a~~~~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i~~~~G 199 (211)
T PF02683_consen 120 AFLLGLLFGLVWSPCTGPILAAILALAASSGSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWIKRISG 199 (211)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566688888899999632 23222 333332 677888899999999888888776665432 2235577888889999
Q ss_pred HHHHHHhhhh
Q 026849 195 SVLCLVGILT 204 (232)
Q Consensus 195 ~v~i~~Gi~~ 204 (232)
.+++++|+..
T Consensus 200 ~lli~~g~~~ 209 (211)
T PF02683_consen 200 ILLIALGLYL 209 (211)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 7
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0012 Score=58.26 Aligned_cols=190 Identities=19% Similarity=0.162 Sum_probs=125.0
Q ss_pred HHHHHHHHhhhhcccCCCc--hhhh--hhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-chhHHHHH
Q 026849 13 TIGGIATVSLLHSFIPTHW--LPFS--IVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG-EDTVHKLA 87 (232)
Q Consensus 13 il~~gf~Lg~lHAl~PdH~--~pv~--~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~-~~~~e~~v 87 (232)
.+..+|..|.+=.+.|==. .|+. .++..+.-+.++....++.--.|=+.+-..+|.....++..++. -++.+.++
T Consensus 12 ~~~~aflaGlls~lSPCilpllP~~l~~~~~~~~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~~i~ 91 (220)
T COG0785 12 SILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGSLGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRYIA 91 (220)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888887522 2322 22222221234456566655667777777778877788877763 35789999
Q ss_pred HHHHHHHHHHHHHHHHh----c--cCCCCCCCCCcchhHHHHHHHHhhccccchhHH---HHHHHhcchh-hHHHHHHHH
Q 026849 88 SLLLVVLGGSYILLFIS----G--KGGHSHSHNQPMEKMAVAGLVLVPALSPCATTL---PVFLAVGNSS-SMMVLAIIV 157 (232)
Q Consensus 88 G~~LI~lG~~yl~~~~~----~--~~~h~H~H~~~~~k~~~~~Lv~~l~lsPc~a~l---pl~L~a~~~~-~~~~lyilv 157 (232)
|++++.+|. .++-..+ . +|.....-..+..++...|+..+++-.||..-+ ++.+++.++. ..+.++.++
T Consensus 92 gi~li~~Gl-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~~~~~~g~~ll~~ 170 (220)
T COG0785 92 GILLILLGL-LFLGVLRLPLLLRFARFQLKGKSVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGALLLAA 170 (220)
T ss_pred HHHHHHHHH-HHHHHHhhhhhhhcchhhhccCCCcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999994 5433332 1 111110001223455777888889999998433 4455555554 778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHHHhhh
Q 026849 158 LLLSTITVMTSLVALSFYGASQ--LKFHWVERYDKLLVGSVLCLVGIL 203 (232)
Q Consensus 158 F~~gti~gM~~~t~l~~~g~~~--~~~~~~ery~~~i~G~v~i~~Gi~ 203 (232)
|++|-.+-..++..+..+..++ .+.+|..|..+.+.|..++.+|+.
T Consensus 171 Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~ 218 (220)
T COG0785 171 YALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLL 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888887773 224455555668999999999975
No 8
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00032 Score=62.30 Aligned_cols=168 Identities=18% Similarity=0.100 Sum_probs=106.6
Q ss_pred cCChhhHHHHHHHHHHhhhhccc-CCCch-hhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccc--
Q 026849 5 GLSAEDLSTIGGIATVSLLHSFI-PTHWL-PFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGE-- 80 (232)
Q Consensus 5 ~m~~~~~sil~~gf~Lg~lHAl~-PdH~~-pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~-- 80 (232)
+|+.+.++ +.....+|..|-+- =+=.. +++..-.+++ +.+ ..+..+.-=+|-+.|=.++|.+.-.+|.+....
T Consensus 1 ~~~~~~l~-~~~~g~lg~gHC~gMCGGi~~afs~~~~~~~-~~~-~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~ 77 (232)
T COG2836 1 MMSISFLG-IFLLGLLGGGHCLGMCGGIVLAFSLLIPSKV-SSS-RLKLHLLYNLGRILSYALLGAILGALGVSLGQSAG 77 (232)
T ss_pred CcchhHHH-HHHHHHhcCccHHHhcchHHHHHHHhccccc-hHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888 66666777767655 22111 3332222222 222 377888889999999999999988888666533
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHhccC----C----CCCCCCCc----chhHHHHHHHHhh--ccccchhHHHHHHHh
Q 026849 81 --DTVHKLASLLLVVLGGSYILLFISGKG----G----HSHSHNQP----MEKMAVAGLVLVP--ALSPCATTLPVFLAV 144 (232)
Q Consensus 81 --~~~e~~vG~~LI~lG~~yl~~~~~~~~----~----h~H~H~~~----~~k~~~~~Lv~~l--~lsPc~a~lpl~L~a 144 (232)
..+..++|++||.+|+.++.+...++. + .-+++-.| +.|..-.+.++|+ ++-||.-.-+-...+
T Consensus 78 ~~~~l~i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~lPCGlVYs~l~~A 157 (232)
T COG2836 78 LRGVLFIIAGALLIALGLYLLARGGMWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGLLPCGLVYSALAYA 157 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHhhchhcchHHHHhhhhhhccccCcchHHHHHHHHhcccchHHHHHHHHHH
Confidence 334689999999999966322111100 0 01111111 1123344666664 899999776555534
Q ss_pred cchh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026849 145 GNSS--SMMVLAIIVLLLSTITVMTSLVALSFY 175 (232)
Q Consensus 145 ~~~~--~~~~lyilvF~~gti~gM~~~t~l~~~ 175 (232)
..++ +++.++.+.|++||.=.|+.+.....+
T Consensus 158 ~~tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~ 190 (232)
T COG2836 158 LSTGSAFEGALVMLAFGLGTLPNLLAMGIFSSK 190 (232)
T ss_pred HHcCCHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 4333 788889999999999999999887775
No 9
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.92 E-value=0.0016 Score=64.65 Aligned_cols=194 Identities=18% Similarity=0.119 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhhhhcccCCCc--hhhh--hhcc-ccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc---chh
Q 026849 11 LSTIGGIATVSLLHSFIPTHW--LPFS--IVGR-AQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG---EDT 82 (232)
Q Consensus 11 ~sil~~gf~Lg~lHAl~PdH~--~pv~--~i~~-~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~---~~~ 82 (232)
+-.+...|..|+.=.+.|=-. .|+. .+.+ +++-+.+|.+..++.-.+|=.++-.++|.++..+|..+.. ..+
T Consensus 166 ~~~l~~afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~ 245 (571)
T PRK00293 166 PWSLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPY 245 (571)
T ss_pred hHHHHHHHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 335667777777777777544 3432 2322 2222556778888888999999999999988887765531 234
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHh-----ccC---CCCCCCCCcchhHHHHHHHHhhccccchh-HH-HHHHH-hcc-hhh
Q 026849 83 VHKLASLLLVVLGGSYIL-LFIS-----GKG---GHSHSHNQPMEKMAVAGLVLVPALSPCAT-TL-PVFLA-VGN-SSS 149 (232)
Q Consensus 83 ~e~~vG~~LI~lG~~yl~-~~~~-----~~~---~h~H~H~~~~~k~~~~~Lv~~l~lsPc~a-~l-pl~L~-a~~-~~~ 149 (232)
+....+++++++|+..+- .+++ +++ ..........-.+.+.|+..++..+||.+ ++ ..+.. +.+ +..
T Consensus 246 ~~~~~~~l~v~lgL~~~G~~~l~lp~~~~~~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~~~ 325 (571)
T PRK00293 246 VLIGLSILFVLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALLYIAQSGDLL 325 (571)
T ss_pred HHHHHHHHHHHHHHHHhcceeccCcHHHHHHhhhhhhcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCcHH
Confidence 567788999999995531 1110 000 00000001112345567777778889973 33 33322 222 226
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhh
Q 026849 150 MMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLI 206 (232)
Q Consensus 150 ~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~ 206 (232)
.+.+...+|++|+.+-++++.....+-.. |..++-+..+.+.|.+++++|+....
T Consensus 326 ~g~~~l~~~gLG~~~Plll~~~~~~~~lp--k~g~wm~~~k~~~G~~ll~~~~~ll~ 380 (571)
T PRK00293 326 LGGLTLYLLALGMGLPLILITTFGNKLLP--KSGPWMNQVKTAFGFVLLALPVFLLE 380 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777789999998888888876543222 23344445666778888888776543
No 10
>PRK11469 hypothetical protein; Provisional
Probab=97.76 E-value=0.0055 Score=52.80 Aligned_cols=180 Identities=16% Similarity=0.062 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHhhhhcccCCCchhhhhhc-cccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 026849 10 DLSTIGGIATVSLLHSFIPTHWLPFSIVG-RAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLAS 88 (232)
Q Consensus 10 ~~sil~~gf~Lg~lHAl~PdH~~pv~~i~-~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG 88 (232)
.++++..++.+++- =-..=.+.+ |.+|-+.++.+...+.-|.-+.+.+++=-...-.+...+ .++-++++.
T Consensus 3 ~~~i~llaialsmD------aF~v~ia~G~~~~~~~~~~~~~~~l~~g~~q~~m~~~g~~~G~~l~~~i--~~~~~~i~~ 74 (188)
T PRK11469 3 ITATVLLAFGMSMD------AFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGMLASRFV--LEWNHWIAF 74 (188)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 45667777776652 111111222 233446677778888888888776665444444444554 345589999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCcchhHHHHHHHHhhccccchhHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Q 026849 89 LLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTS 168 (232)
Q Consensus 89 ~~LI~lG~~yl~~~~~~~~~h~H~H~~~~~k~~~~~Lv~~l~lsPc~a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~ 168 (232)
.+|+.+|+|.+...++++++.+ .+.+.+.+..-.+.++.+.|=++ +.+=++..-.+...+...++.++.|. +.
T Consensus 75 ~lL~~lG~~mi~e~~~~~~~~~--~~~~~~~~~~~~l~LaiAtSiDA--lavGi~~~~~g~~~~~~~~~ig~~s~---~~ 147 (188)
T PRK11469 75 VLLIFLGGRMIIEGFRGADDED--EEPRRRHGFWLLVTTAIATSLDA--MAVGVGLAFLQVNIIATALAIGCATL---IM 147 (188)
T ss_pred HHHHHHHHHHHHHHHhcccccc--cccccCCCHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHH---HH
Confidence 9999999988755554332211 11011111111222222221111 11111111111112122222111111 11
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhh
Q 026849 169 LVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLI 206 (232)
Q Consensus 169 ~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~ 206 (232)
...-...|. +.. +++.||.+.+.|++++++|+....
T Consensus 148 ~~~G~~lG~-~~g-~~~g~~a~~lgG~iLI~iGi~il~ 183 (188)
T PRK11469 148 STLGMMVGR-FIG-SIIGKKAEILGGLVLIGIGVQILW 183 (188)
T ss_pred HHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112343 232 478899999999999999998654
No 11
>COG3376 HoxN High-affinity nickel permease [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.00013 Score=67.24 Aligned_cols=93 Identities=19% Similarity=0.138 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHhhhhcccCCCchhhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHH----HHHhhccc----
Q 026849 8 AEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAI----TMANTIAG---- 79 (232)
Q Consensus 8 ~~~~sil~~gf~Lg~lHAl~PdH~~pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i----~lg~~i~~---- 79 (232)
++.++.-.++-++|.+||+++||.+++=...|+=-..-.+...+|.+-.+||.-..+++.+++. .+.+.+|.
T Consensus 46 ~~~~~~~~laYtfGlRHA~DADHIAAIDN~tRKLmQqgK~p~~VG~fFSlGHStVViL~~l~~~~~~~~~~n~~~~l~~i 125 (342)
T COG3376 46 ASLLGAGLLAYTLGLRHAFDADHIAAIDNVTRKLMQQGKNPLGVGFFFSLGHSTVVILLSLALAAASKAFKNRLPMLEEI 125 (342)
T ss_pred hhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhCCCCCceeeEEEecCchHHHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 4667778888999999999999999987666642222233466889999999988887777653 44466662
Q ss_pred chhHH-HHHHHHHHHHHHHHHH
Q 026849 80 EDTVH-KLASLLLVVLGGSYIL 100 (232)
Q Consensus 80 ~~~~e-~~vG~~LI~lG~~yl~ 100 (232)
+...+ .++|..|..+|+.+++
T Consensus 126 GglIgTlVSg~FLllig~lNli 147 (342)
T COG3376 126 GGLIGTLVSGFFLLLIGLLNLI 147 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 34444 6888889888887664
No 12
>COG1971 Predicted membrane protein [Function unknown]
Probab=97.60 E-value=0.0067 Score=52.68 Aligned_cols=178 Identities=20% Similarity=0.262 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHhhhhcccCCCchhhh-hhc---cccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHH
Q 026849 9 EDLSTIGGIATVSLLHSFIPTHWLPFS-IVG---RAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVH 84 (232)
Q Consensus 9 ~~~sil~~gf~Lg~lHAl~PdH~~pv~-~i~---~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e 84 (232)
+.+|++..++.+++- +|+ .++ +.+|-..++.+.++..-|+-+.++-++=-....++...+ .++-+
T Consensus 2 ~~~sllllA~alsmD---------AFav~l~~G~~~~k~~~~~~L~ia~~fG~f~~i~pliG~~~g~~~s~~i--~~~~~ 70 (190)
T COG1971 2 NIISLLLLAIALSMD---------AFAVSLGKGLAKHKIRFKEALVIALIFGVFQAIMPLIGWFIGKFLSTFI--AEWAH 70 (190)
T ss_pred cHHHHHHHHHHHhhH---------HHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 356788888887763 333 222 234444578899999999999888765443333343333 66778
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcchhHHH--H-HHHHhhccccchhHHHHHHHhcchhhHHHHHHHHHHHH
Q 026849 85 KLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAV--A-GLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLS 161 (232)
Q Consensus 85 ~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~~~~k~~~--~-~Lv~~l~lsPc~a~lpl~L~a~~~~~~~~lyilvF~~g 161 (232)
|+++++|+.+|.+++...++++. . ++.++.||... - ....+.+. +--.+++=++....+.......+..++-
T Consensus 71 wigf~lL~~lG~~mI~e~f~~~~-~--~~~~~~~~~~~~~~~~~~laiat--Sidal~vG~~~a~lgv~i~~~av~iG~~ 145 (190)
T COG1971 71 WIGFVLLIILGLKMIIEGFKNEE-D--EFVDPAEKHDLNFKELILLAIAT--SIDALAVGVGLAFLGVNILLAAVAIGLI 145 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhchhh-c--chhcccccchhhHHHHHHHHHHH--HHHHHHHhhhHHHhcchHHHHHHHHHHH
Confidence 99999999999988865565432 2 22222222211 0 11111222 1111222111111221222222221111
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhhc
Q 026849 162 TITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIF 207 (232)
Q Consensus 162 ti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~~ 207 (232)
|. .|..+.. ..| +++ -+.+++|...+.|+++|++|......
T Consensus 146 T~-il~~~G~--~IG-~~~-g~~~g~~ae~lgGiiLI~~G~~iL~~ 186 (190)
T COG1971 146 TL-ILSALGA--IIG-RKL-GKFLGKYAEILGGIILIGIGVKILLE 186 (190)
T ss_pred HH-HHHHHHH--HHH-HHH-HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111111 123 233 36899999999999999999876543
No 13
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=96.80 E-value=0.11 Score=43.46 Aligned_cols=150 Identities=14% Similarity=0.135 Sum_probs=75.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHH-HHH---hhcc-cchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcchhHHHHHH
Q 026849 51 VTAFGAVLHVLSTSLLGITAI-TMA---NTIA-GEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAVAGL 125 (232)
Q Consensus 51 ~~~~~GlGHtls~~llGl~~i-~lg---~~i~-~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~~~~k~~~~~L 125 (232)
.++...+|+.+.-.+...+.. .++ .+.| ....++++.+..|+++|...+ ++-.+.... +.++..+++..-+.
T Consensus 25 ~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~-~~~~~~~~~--~~~~~~~~~~~~~f 101 (191)
T PF01810_consen 25 AGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLL-RSKFSSKSS--TQSEAKKQSKSKSF 101 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH-hcccCcchh--hhhhhccccHHHHH
Confidence 455566777777776665553 222 2233 256778999999999999444 332221111 11111101111122
Q ss_pred HHhh---ccccch-----hHHHHHHHhcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 026849 126 VLVP---ALSPCA-----TTLPVFLAVGNSS-SMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSV 196 (232)
Q Consensus 126 v~~l---~lsPc~-----a~lpl~L~a~~~~-~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v 196 (232)
..|+ ..-|=. ++.|.+... +.. .....+.+.+..++..-...+..+..+..++++.++.. +.+.++|.+
T Consensus 102 ~~g~~~~~~NPk~il~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~i~~~~g~~ 179 (191)
T PF01810_consen 102 LTGFLLNLLNPKAILFWLAVFPQFISP-EYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIR-WINRISGLL 179 (191)
T ss_pred HHHHHHHHHhHHHHHHHHHhhhcccCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHH
Confidence 2222 222200 111222221 222 33333334444555555555555555555566544444 899999999
Q ss_pred HHHHhhhhh
Q 026849 197 LCLVGILTL 205 (232)
Q Consensus 197 ~i~~Gi~~~ 205 (232)
++++|+...
T Consensus 180 li~~av~l~ 188 (191)
T PF01810_consen 180 LIGFAVYLL 188 (191)
T ss_pred HHHHHHHHH
Confidence 999998654
No 14
>PF13795 HupE_UreJ_2: HupE / UreJ protein
Probab=96.71 E-value=0.02 Score=48.12 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=87.5
Q ss_pred HHHhhhhccc-CCCchhhhhhcc---ccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 026849 18 ATVSLLHSFI-PTHWLPFSIVGR---AQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVV 93 (232)
Q Consensus 18 f~Lg~lHAl~-PdH~~pv~~i~~---~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~LI~ 93 (232)
|-+|+.|-+. .||.+=+..+.- .+ +.+|.+..--.-.+||++|+.+-..-.+ ++ +...+|.+.+.-.++
T Consensus 2 ~~~G~~HIl~G~DHlLFll~L~l~~~~~--~~~~ll~~vTaFTlgHSiTL~L~~~~~v----~~-~~~~VE~lIAlSI~~ 74 (151)
T PF13795_consen 2 FKLGIEHILTGYDHLLFLLALVLPFLFR--SWKRLLKLVTAFTLGHSITLALAALGIV----SV-PSRLVEALIALSIAF 74 (151)
T ss_pred hHhHHHHHHhhHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccc----CC-ChHHHHHHHHHHHHH
Confidence 4579999999 899996553332 33 3445666655668999999876554332 22 478899999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCcchhHHHHHHHHhhccccchhHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026849 94 LGGSYILLFISGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALS 173 (232)
Q Consensus 94 lG~~yl~~~~~~~~~h~H~H~~~~~k~~~~~Lv~~l~lsPc~a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~ 173 (232)
..+.++ ++++ .. .+.+.--....|++||+++|- ++--+ .-.+.+.+.-.+-|.+|.=+|.+.++.+.
T Consensus 75 ~A~~nl----~~~~-~~--~~~~~~v~~~FGLiHGlGFA~--~l~~~----~~~~~~~~~~Ll~FNlGVElgQl~iv~~~ 141 (151)
T PF13795_consen 75 VALENL----RRPK-RS--ARRRWLVAFGFGLIHGLGFAS--ALKEL----GLPSDQLLLALLSFNLGVELGQLAIVLLV 141 (151)
T ss_pred HHHHHh----hccc-cc--cccHHHHHHHHHHHHHHHHHH--HHHHh----CCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999666 1110 00 000111236669999999855 43322 11123455566789999999998888755
Q ss_pred H
Q 026849 174 F 174 (232)
Q Consensus 174 ~ 174 (232)
.
T Consensus 142 l 142 (151)
T PF13795_consen 142 L 142 (151)
T ss_pred H
Confidence 4
No 15
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=96.63 E-value=0.17 Score=44.18 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=32.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 026849 51 VTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGK 106 (232)
Q Consensus 51 ~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~LI~lG~~yl~~~~~~~ 106 (232)
..+..|+-+.+.+.+=-.+.-.++..++ .++.+++.+.+|+.+|++.++..++++
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~-~~~~~~ig~~iLi~iG~~mi~~~~~~~ 86 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLP-PKVTEILGAFILIAIGIWIIYNAFRPK 86 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555444332222233444442 236789999999999998885555543
No 16
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=96.34 E-value=0.57 Score=40.45 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=87.9
Q ss_pred HhhhhcccCCCchhhh-hhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc-c--------chhHHHHHHH
Q 026849 20 VSLLHSFIPTHWLPFS-IVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIA-G--------EDTVHKLASL 89 (232)
Q Consensus 20 Lg~lHAl~PdH~~pv~-~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~-~--------~~~~e~~vG~ 89 (232)
+++.=+++|......+ .+.| +| ..++. ...-.|..+..+..|.+.......++ . ...++.+.|+
T Consensus 4 LAl~~a~sP~~i~~~vlll~~-~r-~~~~~----~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv 77 (214)
T PF11139_consen 4 LALVDALSPLPIVIAVLLLSR-PR-PRRNL----LAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGV 77 (214)
T ss_pred HHHHHHhChHHHHHHHHHhcC-CC-ccchh----HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHH
Confidence 3444456777776544 4554 33 22332 23345777778888877765554433 1 2444667777
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCC----------cchhHHHHHHHHhhccccch----hHHHHHHHhcchhhHHHHHH
Q 026849 90 LLVVLGGSYILLFISGKGGHSHSHNQ----------PMEKMAVAGLVLVPALSPCA----TTLPVFLAVGNSSSMMVLAI 155 (232)
Q Consensus 90 ~LI~lG~~yl~~~~~~~~~h~H~H~~----------~~~k~~~~~Lv~~l~lsPc~----a~lpl~L~a~~~~~~~~lyi 155 (232)
.|+++|. +..++++....+-.. +.-++...|+..+..-.++. +..-...++..+......+.
T Consensus 78 ~ll~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~~l 153 (214)
T PF11139_consen 78 LLLLLAV----RVWRRRPRPDPPSRPPRWLARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVVAL 153 (214)
T ss_pred HHHHHHH----HHhhcccccCCCCCchhhhhhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7777777 333322111100000 01134555666664332321 11122212222324444555
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHhhccchhHHHHHHHHHHHHHHHHHhhhhhh
Q 026849 156 IVLLLSTITVMTSLVALSF-------YGASQLKFHWVERYDKLLVGSVLCLVGILTLI 206 (232)
Q Consensus 156 lvF~~gti~gM~~~t~l~~-------~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~ 206 (232)
++|.+-............. .-++|. .+|++|+.+.+.+.+..++|+....
T Consensus 154 ~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~-~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 154 VVYCLIASLPALLPLLAYLVAPERAEPWLERL-RSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHccHHHHHHHHHHHHHHHHH
Confidence 5665554444333333222 122344 4788888889999999999986543
No 17
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=96.19 E-value=0.45 Score=39.62 Aligned_cols=150 Identities=11% Similarity=0.102 Sum_probs=69.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH-HHH---hhcc-cchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC---CCcchhHH
Q 026849 50 FVTAFGAVLHVLSTSLLGITAI-TMA---NTIA-GEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSH---NQPMEKMA 121 (232)
Q Consensus 50 ~~~~~~GlGHtls~~llGl~~i-~lg---~~i~-~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H---~~~~~k~~ 121 (232)
+.++...+|..+..++...+.. .++ .+.| ....++++.+..|+.+|...+ +.+....++. +.+.+++.
T Consensus 19 ~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~----~~~~~~~~~~~~~~~~~~~~~ 94 (185)
T TIGR00949 19 RAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKML----RKKSKKQSPAAQVELAEQTTW 94 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HccccccccccccccccCccH
Confidence 3455556777777666655442 232 2333 256678889999999998322 2211111111 11111111
Q ss_pred HHHHHHhh---cccc-----chhHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 026849 122 VAGLVLVP---ALSP-----CATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLV 193 (232)
Q Consensus 122 ~~~Lv~~l---~lsP-----c~a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~ 193 (232)
..+..-|+ .+-| ..++.|-+.....+..+.+.+...+...........+.+..+..++.+.++..|+.+.+.
T Consensus 95 ~~~f~~g~~~~~~NPk~ilf~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~ 174 (185)
T TIGR00949 95 KKSFRRGLLTNLSNPKAVLFFISIFSQFINPNTPTWQLIVLGLTIIVETILWFYVLSLIFSRPAVRRKYSKQQKWIDGIT 174 (185)
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 11222222 2222 112233332211111222222222223333333333333333223334567888999999
Q ss_pred HHHHHHHhhh
Q 026849 194 GSVLCLVGIL 203 (232)
Q Consensus 194 G~v~i~~Gi~ 203 (232)
|.+++++|+.
T Consensus 175 g~~l~~~~v~ 184 (185)
T TIGR00949 175 GALFVGFGIR 184 (185)
T ss_pred HHHHHHHHhc
Confidence 9999988863
No 18
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=96.14 E-value=0.22 Score=43.34 Aligned_cols=148 Identities=19% Similarity=0.274 Sum_probs=78.6
Q ss_pred chhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC-----cchh
Q 026849 45 LSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQ-----PMEK 119 (232)
Q Consensus 45 ~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~-----~~~k 119 (232)
.+|-..+|=+.|.+=.+...+++ .++..+-+.++.=.+-|++=+++|++.+ .++++..-+..+ +..+
T Consensus 24 ~~~~I~~GqylG~~~Lv~~Sl~~----~~~l~~ip~~wiLGlLGliPI~lGi~~l----~~~~~~~e~~~~~~~~~~~~~ 95 (191)
T PF03596_consen 24 RRRQIVIGQYLGFTILVLASLLG----AFGLLFIPPEWILGLLGLIPIYLGIKAL----FSGEDDDEEEAEEKLNSPKSN 95 (191)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHH----HHHHHhCCHHHHHHHHHHHHHHHHHHHH----HcCCCcccccccccccccccc
Confidence 34456666666654333333333 2332222345665567899999999555 332211111111 1112
Q ss_pred HHHHHHHHh-hccccch--hHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHH
Q 026849 120 MAVAGLVLV-PALSPCA--TTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLK--FHWVERYDKLLVG 194 (232)
Q Consensus 120 ~~~~~Lv~~-l~lsPc~--a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~--~~~~ery~~~i~G 194 (232)
+.+.....- .+-++|. -.+|++ +..+..+...++++|.+. +.+-....+-..+.+ .+.+|||.+.+.-
T Consensus 96 ~~i~~Va~iTiAnGgDNigIYiP~F--a~~s~~~l~v~l~vF~il-----v~v~c~la~~l~~~p~i~~~leryg~~l~p 168 (191)
T PF03596_consen 96 SLILTVAAITIANGGDNIGIYIPLF--ASLSLAELIVILIVFLIL-----VGVWCFLAYKLARIPIIAEFLERYGRWLVP 168 (191)
T ss_pred chhHHhhhhhhhcCCCeEEEeehhh--hcCCHHHHHHHHHHHHHH-----HHHHHHHHHHHhCChHHHHHHHHhcccHHH
Confidence 223222111 4556676 456876 444555666666666432 223333333332222 6899999999999
Q ss_pred HHHHHHhhhhhhc
Q 026849 195 SVLCLVGILTLIF 207 (232)
Q Consensus 195 ~v~i~~Gi~~~~~ 207 (232)
.+.+++|+....+
T Consensus 169 ~v~I~LGi~Il~e 181 (191)
T PF03596_consen 169 IVYIGLGIYILIE 181 (191)
T ss_pred HHHHHhCceeeEe
Confidence 9999999865443
No 19
>PRK09304 arginine exporter protein; Provisional
Probab=95.77 E-value=1.1 Score=38.44 Aligned_cols=183 Identities=13% Similarity=-0.029 Sum_probs=84.6
Q ss_pred HHHHHHHHhhhhcccCCCchhhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHH-HHHHH---hhcc-cchhHHHHH
Q 026849 13 TIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGIT-AITMA---NTIA-GEDTVHKLA 87 (232)
Q Consensus 13 il~~gf~Lg~lHAl~PdH~~pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~-~i~lg---~~i~-~~~~~e~~v 87 (232)
....|+.+|+.=++.||=-.-++ ++++-+ .++ ++..++|-.....+.... .+.++ .+.| ....++++.
T Consensus 4 ~~~~g~~~g~~~~~tPGP~~~~v-~~~~~~--~~~----~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~G 76 (207)
T PRK09304 4 YYFQGFALGAAMILPLGPQNAFV-MNQGIR--RQY----HLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGG 76 (207)
T ss_pred HHHHHHHHHHHHHhccChHHHHH-HHHHHc--ccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999987433322 222222 122 334444444444443332 12222 3334 356678888
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCc--c-hhHHHHHHHHhhccccchh-----HHHHHHHhcchh-hHHHHHHHHH
Q 026849 88 SLLLVVLGGSYILLFISGKGGHSHSHNQP--M-EKMAVAGLVLVPALSPCAT-----TLPVFLAVGNSS-SMMVLAIIVL 158 (232)
Q Consensus 88 G~~LI~lG~~yl~~~~~~~~~h~H~H~~~--~-~k~~~~~Lv~~l~lsPc~a-----~lpl~L~a~~~~-~~~~lyilvF 158 (232)
+.-|+++|.-.+ |+-+++....++++.. . .+....|+..- ..-|=.. +.+-++.+.+.. .+..... .+
T Consensus 77 a~YLlyLg~~~~-rs~~~~~~~~~~~~~~~~~~~~~f~~G~~~~-l~NPKa~lf~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (207)
T PRK09304 77 VAFLLWYGFGAF-KTAMSSNIELASAEVMKQGRWKIIATMLAVT-WLNPHVYLDTFVVLGSLGGQLDVEPKRWFALG-TI 153 (207)
T ss_pred HHHHHHHHHHHH-HHhcccccccccccccCccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHhccCcchhHHHHHH-HH
Confidence 999999998333 3211011111111111 1 11122222221 2222211 122222222221 2221221 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhh
Q 026849 159 LLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLI 206 (232)
Q Consensus 159 ~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~ 206 (232)
+.+.......+.+..+..++++.++..|+.+.+.|.+++.+|+....
T Consensus 154 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~in~~~g~~l~~~~~~l~~ 200 (207)
T PRK09304 154 -SASFLWFFGLALLAAWLAPRLRTAKAQRIINLFVGCVMWFIALQLAR 200 (207)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444444444445555678889999999999999986643
No 20
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.53 E-value=0.044 Score=49.26 Aligned_cols=24 Identities=17% Similarity=-0.063 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026849 151 MVLAIIVLLLSTITVMTSLVALSF 174 (232)
Q Consensus 151 ~~lyilvF~~gti~gM~~~t~l~~ 174 (232)
...+..+|+++.+.||........
T Consensus 176 ~~~~~~~~~~~f~~Gm~p~~~a~~ 199 (282)
T PF03824_consen 176 PISWILLLGLGFAAGMVPCPGALG 199 (282)
T ss_pred CchHHHHHHHHHHhhccccHHHHH
Confidence 445667888888888887666333
No 21
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.025 Score=49.05 Aligned_cols=138 Identities=18% Similarity=0.293 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHHHH---HhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc-ch------hHHHHHHH
Q 026849 57 VLHVLSTSLLGITAITM---ANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQP-ME------KMAVAGLV 126 (232)
Q Consensus 57 lGHtls~~llGl~~i~l---g~~i~~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~~-~~------k~~~~~Lv 126 (232)
+||-+.++.+-++.+.+ ++.+ +++++-.+-|++=+.+|+++++..-+ + -+++ ++ +.....-+
T Consensus 41 ~GQyLGs~~lilaSL~~a~v~~fv-p~e~I~glLGLIPi~LGik~l~~~d~-d------~e~~~~e~L~~~~~k~lv~tV 112 (205)
T COG4300 41 LGQYLGSVILILASLLFAFVLNFV-PEEWILGLLGLIPIYLGIKVLILGDD-D------GEEEAKEELAFKKNKNLVGTV 112 (205)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhC-cHHHHHHHHhHHHHHHhhHHhhcccC-c------CchhhhHHHHhccccceEEEE
Confidence 35555555544444322 3333 47777778899999999977743322 1 1111 11 11122333
Q ss_pred Hhhccccchh-----HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHH
Q 026849 127 LVPALSPCAT-----TLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLK--FHWVERYDKLLVGSVLCL 199 (232)
Q Consensus 127 ~~l~lsPc~a-----~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~--~~~~ery~~~i~G~v~i~ 199 (232)
....++-|-+ +.|++. ..+....++++++|.+. +..++++ .+-.+++. .+.+|||.+.+...+.++
T Consensus 113 ~~vT~AscG~DNIgvyvP~F~--tl~~~~llv~l~vF~v~--I~iL~~~---a~~la~ip~I~evlEk~sr~i~~~V~I~ 185 (205)
T COG4300 113 AIVTFASCGADNIGVFVPYFA--TLNLANLLVALLVFLVM--IYILVFL---AQKLAQIPPIGEVLEKYSRWIVAFVYIG 185 (205)
T ss_pred EEEEEeccCCcceEEEeeeee--cccHHHHHHHHHHHHHH--HHHHHHH---HHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 3445555654 468773 33345566677777543 2222222 22223332 689999999999999999
Q ss_pred HhhhhhhccC
Q 026849 200 VGILTLIFHD 209 (232)
Q Consensus 200 ~Gi~~~~~~~ 209 (232)
+|+.......
T Consensus 186 LGlfIl~E~g 195 (205)
T COG4300 186 LGLFILYENG 195 (205)
T ss_pred hhheeEEeCC
Confidence 9987655443
No 22
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=95.11 E-value=1.3 Score=37.71 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=21.2
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhhhhh
Q 026849 178 SQLKFHWVERYDKLLVGSVLCLVGILTL 205 (232)
Q Consensus 178 ~~~~~~~~ery~~~i~G~v~i~~Gi~~~ 205 (232)
++.+.++..|+.+.+.|.+.+.+|+...
T Consensus 174 ~~~~~~~~~~~i~~~~g~~li~~~~~l~ 201 (205)
T PRK10520 174 RWIKGPKQMKALNKIFGSLFMLVGALLA 201 (205)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567778889999999999997653
No 23
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=94.94 E-value=0.2 Score=43.08 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=56.1
Q ss_pred hccccch-hHHHHHHHhcchh------hH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 026849 129 PALSPCA-TTLPVFLAVGNSS------SM---MVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLC 198 (232)
Q Consensus 129 l~lsPc~-a~lpl~L~a~~~~------~~---~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i 198 (232)
..++||. +++|++++..... .+ .+...+.|..|..+....+.......-+..+ ...+|...+.|.+.+
T Consensus 8 ~~~sPC~lp~lp~~l~~~~~~~~~~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~--~~~~~~~~i~g~~~i 85 (211)
T PF02683_consen 8 SSFSPCVLPVLPLYLSYIAGSGASSRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFG--QISPWLYIIAGVLLI 85 (211)
T ss_pred HhcCcHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5789998 7888888443332 11 4677788888888888888776665544443 567888999999999
Q ss_pred HHhhhhhhc
Q 026849 199 LVGILTLIF 207 (232)
Q Consensus 199 ~~Gi~~~~~ 207 (232)
++|+.....
T Consensus 86 ~~Gl~~l~~ 94 (211)
T PF02683_consen 86 LFGLSLLGL 94 (211)
T ss_pred HHHHHHHHh
Confidence 999976543
No 24
>PRK10958 leucine export protein LeuE; Provisional
Probab=94.92 E-value=2.2 Score=36.82 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 026849 182 FHWVERYDKLLVGSVLCLVGILT 204 (232)
Q Consensus 182 ~~~~ery~~~i~G~v~i~~Gi~~ 204 (232)
.++..|+.+.+.|.+++.+|+..
T Consensus 185 ~~~~~~~i~~~~g~~l~~~~i~l 207 (212)
T PRK10958 185 RKKLAAGGNSLVGLLFVGFAAKL 207 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999765
No 25
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=94.77 E-value=2.3 Score=36.21 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q 026849 183 HWVERYDKLLVGSVLCLVGILT 204 (232)
Q Consensus 183 ~~~ery~~~i~G~v~i~~Gi~~ 204 (232)
++.+|+.+.+.|.+++.+|+..
T Consensus 172 ~~~~~~i~~~~g~~l~~~a~~l 193 (195)
T PRK10323 172 RQYGRQLNIVLALLLVYCAVRI 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999998753
No 26
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=92.48 E-value=6.5 Score=33.96 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=69.6
Q ss_pred HHHHHhhhHHHHHHHHHHHH-HHHH---hhcc-cchhHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCCCc-ch---hH
Q 026849 51 VTAFGAVLHVLSTSLLGITA-ITMA---NTIA-GEDTVHKLASLLLVVLGGSYILLFISGKGGHS-HSHNQP-ME---KM 120 (232)
Q Consensus 51 ~~~~~GlGHtls~~llGl~~-i~lg---~~i~-~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~-H~H~~~-~~---k~ 120 (232)
.+...++||.....+.-... ..++ .+.| ....+.++.+.-|+++|+ +.+|.++... .+.... .. |.
T Consensus 38 ~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~----~~~ra~~~~~~~~~~~~~~~~~~~~ 113 (208)
T COG1280 38 AGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGW----KALRAGGAALAEEAAGAPSSSRRKA 113 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHhcccccccccccccccchhHHH
Confidence 44555667665554444333 1222 2222 245667888888888888 3333321111 111111 11 12
Q ss_pred HHHHHHHhhcccc-----chhHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 026849 121 AVAGLVLVPALSP-----CATTLPVFLAVGNSS--SMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLV 193 (232)
Q Consensus 121 ~~~~Lv~~l~lsP-----c~a~lpl~L~a~~~~--~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~ 193 (232)
...|+..-+ +=| -.++.|-+.....+. .+.+....++.+-....+..........-+.++.++..|+.+.+.
T Consensus 114 f~~G~~~~l-~NPK~~lf~la~~pqfv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 192 (208)
T COG1280 114 FRRGLLVNL-LNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFILVGFVVLALYALLAARLRRLLRRPRASRIINRLF 192 (208)
T ss_pred HHHHHHHHh-hCcHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 222333321 111 123444444333322 222222233333333333333333222223333356899999999
Q ss_pred HHHHHHHhhhhhh
Q 026849 194 GSVLCLVGILTLI 206 (232)
Q Consensus 194 G~v~i~~Gi~~~~ 206 (232)
|.+++.+|+....
T Consensus 193 G~~li~~g~~l~~ 205 (208)
T COG1280 193 GVLLIGFGVKLAL 205 (208)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 27
>PRK11111 hypothetical protein; Provisional
Probab=92.45 E-value=7.1 Score=34.34 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 026849 81 DTVHKLASLLLVVLGGSYI 99 (232)
Q Consensus 81 ~~~e~~vG~~LI~lG~~yl 99 (232)
+.++...|++|..+|+-.+
T Consensus 76 ~afrIaGGiiL~~ial~Ml 94 (214)
T PRK11111 76 DSFRIAGGILVVTIAMSMI 94 (214)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6678999999999999443
No 28
>COG4280 Predicted membrane protein [Function unknown]
Probab=91.67 E-value=3.9 Score=36.35 Aligned_cols=181 Identities=18% Similarity=0.165 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhhhcccCCCchhhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc--cchhHHHHHH
Q 026849 11 LSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIA--GEDTVHKLAS 88 (232)
Q Consensus 11 ~sil~~gf~Lg~lHAl~PdH~~pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~--~~~~~e~~vG 88 (232)
+|+...+|..++.--.|..=. +.++++.++|+. ..++...|+.=+ -...+.+|..+. +-+++++++|
T Consensus 3 wsi~lAAl~sSlvElvEa~aI--a~avg~~~~wr~---al~ga~lglalv------l~l~lvlGk~L~lvPln~lqiv~g 71 (236)
T COG4280 3 WSIFLAALGSSLVELVEAGAI--AAAVGNIYKWRL---ALIGAVLGLALV------LILTLVLGKLLYLVPLNYLQIVSG 71 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhhhhhccccH---HHHHHHHHHHHH------HHHHHHHccceeeeechHHHHHHH
Confidence 677777777777666664322 346777788874 344554444322 233446664443 4688999999
Q ss_pred HHHHHHHHHHHHHHHhc--cCCCCCCCCC-------cc-hh--HHHHHHHHh--hccccch-hHHHHHHHhcchhhHHHH
Q 026849 89 LLLVVLGGSYILLFISG--KGGHSHSHNQ-------PM-EK--MAVAGLVLV--PALSPCA-TTLPVFLAVGNSSSMMVL 153 (232)
Q Consensus 89 ~~LI~lG~~yl~~~~~~--~~~h~H~H~~-------~~-~k--~~~~~Lv~~--l~lsPc~-a~lpl~L~a~~~~~~~~l 153 (232)
++|+.+|--......|| ++...|..+. ++ +. +....++.+ .++=.-| .++.+.+.+.++++.-..
T Consensus 72 vLLllFG~rw~Rsavrr~ag~rkg~~ee~leE~~~ldq~e~g~~~la~l~~fk~v~LeglEv~~iVialgaa~sqwleAi 151 (236)
T COG4280 72 VLLLLFGYRWIRSAVRRFAGIRKGGGEEKLEEGIVLDQEEEGFSKLALLVVFKVVALEGLEVSLIVIALGAASSQWLEAI 151 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhchhccCchhhHhhhhhcccccccchhhhHHHHhHHHHHhhheeeeeeeeechhhhHHHHHH
Confidence 99999998666433333 1223332221 11 11 122112222 2222222 333455555555532222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC
Q 026849 154 AIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIFHD 209 (232)
Q Consensus 154 yilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~~~~ 209 (232)
.-..| .+++.| .++.++-.-..|++ |+..|...|..+..+|........
T Consensus 152 ~gagf--A~vlvl-vl~~~lh~plarvp----e~~lKfvag~lL~sfGtfWlgegv 200 (236)
T COG4280 152 MGAGF--ASVLVL-VLTAILHSPLARVP----EPHLKFVAGALLFSFGTFWLGEGV 200 (236)
T ss_pred HHHHH--HHHHHH-HHHHHhccHHhhCC----chhHHHHHHHHHHHhhHHHhcccc
Confidence 22222 222222 23333333444553 566789999999999987765544
No 29
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=90.20 E-value=11 Score=32.64 Aligned_cols=19 Identities=5% Similarity=0.202 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 026849 81 DTVHKLASLLLVVLGGSYI 99 (232)
Q Consensus 81 ~~~e~~vG~~LI~lG~~yl 99 (232)
+.++...|++|...|+-.+
T Consensus 70 ~af~IaGGiiL~~ia~~ml 88 (203)
T PF01914_consen 70 PAFRIAGGIILFLIALEML 88 (203)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6678999999999999444
No 30
>TIGR00948 2a75 L-lysine exporter.
Probab=89.17 E-value=12 Score=31.09 Aligned_cols=45 Identities=13% Similarity=0.022 Sum_probs=29.9
Q ss_pred HHHHhhhHHHHHHHHHHHH-HHHH---hhcc-cchhHHHHHHHHHHHHHH
Q 026849 52 TAFGAVLHVLSTSLLGITA-ITMA---NTIA-GEDTVHKLASLLLVVLGG 96 (232)
Q Consensus 52 ~~~~GlGHtls~~llGl~~-i~lg---~~i~-~~~~~e~~vG~~LI~lG~ 96 (232)
++..++|+.....+...+. +.++ .+.| ..+.+.++.+.-|+++|.
T Consensus 22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~ 71 (177)
T TIGR00948 22 VLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGF 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 6667788887777665544 2232 2233 256678888999999998
No 31
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=4.2 Score=35.94 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=45.2
Q ss_pred HHHHHh--hccccch-hHHHHHHHhcchh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 026849 123 AGLVLV--PALSPCA-TTLPVFLAVGNSS-----SMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVG 194 (232)
Q Consensus 123 ~~Lv~~--l~lsPc~-a~lpl~L~a~~~~-----~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G 194 (232)
.+...| -++|||. +++|.+++..... +....-.+.|..|.......+......--+.+. .+.+ |.+.+.|
T Consensus 15 ~aflaGlls~lSPCilpllP~~l~~~~~~~~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~-~~~~-~l~~i~g 92 (220)
T COG0785 15 LAFLAGLLSFLSPCVLPLLPAYLSYLAGGSLGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLP-LNRL-YLRYIAG 92 (220)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHH
Confidence 344444 3899998 8889988554443 123333344444444443333332222212222 2233 8889999
Q ss_pred HHHHHHhhhhh
Q 026849 195 SVLCLVGILTL 205 (232)
Q Consensus 195 ~v~i~~Gi~~~ 205 (232)
.+++++|....
T Consensus 93 i~li~~Gl~~l 103 (220)
T COG0785 93 ILLILLGLLFL 103 (220)
T ss_pred HHHHHHHHHHH
Confidence 99999995433
No 32
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=87.68 E-value=4.3 Score=34.42 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Q 026849 81 DTVHKLASLLLVVLGGSYILLFISG 105 (232)
Q Consensus 81 ~~~e~~vG~~LI~lG~~yl~~~~~~ 105 (232)
.++-.+++++|+++++.-+.+..+.
T Consensus 32 ~~~~~~a~i~l~ilai~q~~~~~~~ 56 (182)
T PF09323_consen 32 IPLLYFAAILLLILAIVQLWRWFRP 56 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456789999999999777444443
No 33
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=87.29 E-value=21 Score=31.83 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=17.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 026849 80 EDTVHKLASLLLVVLGGSYILLFI 103 (232)
Q Consensus 80 ~~~~e~~vG~~LI~lG~~yl~~~~ 103 (232)
...++.+.+..+++.|+ |.+|+.
T Consensus 67 g~~~h~imal~li~~Gi-~ti~~W 89 (224)
T PF09930_consen 67 GMVIHLIMALLLIYAGI-YTIKKW 89 (224)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHH
Confidence 45568899999999999 554554
No 34
>COG2119 Predicted membrane protein [Function unknown]
Probab=87.12 E-value=20 Score=31.36 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=66.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcchhHHHHHHHHhhccc--cchhHH-HHHHHhcchhhHHHHHH
Q 026849 79 GEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAVAGLVLVPALS--PCATTL-PVFLAVGNSSSMMVLAI 155 (232)
Q Consensus 79 ~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~~~~k~~~~~Lv~~l~ls--Pc~a~l-pl~L~a~~~~~~~~lyi 155 (232)
++.+..+..+..-+++|+|-+ +.-+..++..+ .+.+|+...--+...+++ ++-.=+ -+.|++..+....
T Consensus 63 ~~~~~~~~~~~~Flafav~~l-~edk~~~~e~~---~~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~---- 134 (190)
T COG2119 63 PERPLAWASGVLFLAFAVWML-IEDKEDDEEAQ---AASPRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWA---- 134 (190)
T ss_pred chhHHHHHHHHHHHHHHHHHh-ccccccccccc---ccccccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCcee----
Confidence 578899999999999999666 22221111110 123344332222221110 111112 2334444333211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhhc
Q 026849 156 IVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIF 207 (232)
Q Consensus 156 lvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~~ 207 (232)
|| +||.+||++-+.+...+=+....+-=+|..+.+.|+...++|+.....
T Consensus 135 -V~-~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~ 184 (190)
T COG2119 135 -VF-AGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ 184 (190)
T ss_pred -ee-hhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 789999999998776533333223347888899999999999765443
No 35
>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins. They contain many conserved histidines that are likely to be involved in nickel binding.
Probab=86.19 E-value=21 Score=30.62 Aligned_cols=71 Identities=23% Similarity=0.189 Sum_probs=40.2
Q ss_pred HHHHHhhhhccc-CCCchhhhhhc---cccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 026849 16 GIATVSLLHSFI-PTHWLPFSIVG---RAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLL 91 (232)
Q Consensus 16 ~gf~Lg~lHAl~-PdH~~pv~~i~---~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~L 91 (232)
.+|.=|+.|=+. +||..+...++ .+++-+.++..-.++ ....++|...-..+..+ ...|..+..=+
T Consensus 20 ~gf~sGl~HPl~GlDHLl~mlavGl~aa~~~~~~~~~~p~~f-------~~~m~~G~~lg~~g~~~---p~~E~~Ia~Sv 89 (180)
T PF04955_consen 20 GGFLSGLLHPLTGLDHLLAMLAVGLWAAQQGGRARWALPLAF-------VAAMLVGAALGLAGVPL---PGVETGIAASV 89 (180)
T ss_pred hhHHHHhhcccccHHHHHHHHHHHHHHHHhccchHHHHHHHH-------HHHHHHHHHHHhccCCc---hHHHHHHHHHH
Confidence 489999999999 99999866432 222111111121221 12233344333333444 56787777777
Q ss_pred HHHHH
Q 026849 92 VVLGG 96 (232)
Q Consensus 92 I~lG~ 96 (232)
+++|+
T Consensus 90 ~~~G~ 94 (180)
T PF04955_consen 90 LVLGL 94 (180)
T ss_pred HHHHH
Confidence 88888
No 36
>PRK10995 inner membrane protein; Provisional
Probab=85.79 E-value=24 Score=30.95 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 026849 81 DTVHKLASLLLVVLGGSY 98 (232)
Q Consensus 81 ~~~e~~vG~~LI~lG~~y 98 (232)
..++...|++|..+|+-.
T Consensus 74 ~a~rIaGGilL~~igi~m 91 (221)
T PRK10995 74 PGLRIAGGLIVAFIGFRM 91 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678999999999999933
No 37
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=85.64 E-value=29 Score=31.88 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=37.5
Q ss_pred cccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc---chhHH----HHHHHHHHHHHHHHH
Q 026849 39 RAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG---EDTVH----KLASLLLVVLGGSYI 99 (232)
Q Consensus 39 ~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~---~~~~e----~~vG~~LI~lG~~yl 99 (232)
|+++.+.+|.+..|+..|+ +.++++|.++......++. .|.+| .++-+++...+.|..
T Consensus 31 k~~~~~~~~~V~~G~~~gl---~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~ 95 (283)
T TIGR00145 31 RAQRTRLRGWVWVGVLAGF---AACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWML 95 (283)
T ss_pred hcCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567788888886664 3444666666555544442 34444 677788888898777
No 38
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=85.26 E-value=7.2 Score=38.94 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=52.4
Q ss_pred HHHHh--hccccch-hHHHHHHHhcc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccchhHHHHHHHHHH
Q 026849 124 GLVLV--PALSPCA-TTLPVFLAVGN------SSSMMVLAIIVLLLSTITVMTSLVALSFY-GASQLKFHWVERYDKLLV 193 (232)
Q Consensus 124 ~Lv~~--l~lsPc~-a~lpl~L~a~~------~~~~~~lyilvF~~gti~gM~~~t~l~~~-g~~~~~~~~~ery~~~i~ 193 (232)
.+..| +.++||- +++|++.+... +....+...+.|.+|.+++.+++..+... |.. ++...-..+...+.
T Consensus 172 afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~-~~~~~q~~~~~~~~ 250 (571)
T PRK00293 172 FFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQ-FQAALQHPYVLIGL 250 (571)
T ss_pred HHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHH
Confidence 44444 5899998 77888764321 12345666788999999888877775553 421 11111135677888
Q ss_pred HHHHHHHhhhhh
Q 026849 194 GSVLCLVGILTL 205 (232)
Q Consensus 194 G~v~i~~Gi~~~ 205 (232)
+++++++|+...
T Consensus 251 ~~l~v~lgL~~~ 262 (571)
T PRK00293 251 SILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHh
Confidence 899999998764
No 39
>PRK10229 threonine efflux system; Provisional
Probab=82.97 E-value=28 Score=29.49 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q 026849 183 HWVERYDKLLVGSVLCLVGILT 204 (232)
Q Consensus 183 ~~~ery~~~i~G~v~i~~Gi~~ 204 (232)
++..|+.+.+.|.+++.+|+..
T Consensus 181 ~~~~~~in~~~g~~li~~~i~l 202 (206)
T PRK10229 181 QRLAKWIDGFAGALFAGFGIHL 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788899999999998754
No 40
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=77.21 E-value=1.9 Score=37.64 Aligned_cols=143 Identities=22% Similarity=0.255 Sum_probs=72.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc--hhHHHHHH-
Q 026849 49 LFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPM--EKMAVAGL- 125 (232)
Q Consensus 49 l~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~~~--~k~~~~~L- 125 (232)
..+|=+.|.+=.+...++|.. -...+| +++.=.+-|++=+++|++.+ +++++...+...+. +++..-+.
T Consensus 27 IviGqylGf~~Lv~~Sl~~a~---gl~~iP-~~wIlGlLGliPI~lGi~~l----~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (193)
T TIGR00779 27 IYIGQYLGSIILILVSLLLAF---GVNLIP-EKWVLGLLGLIPIYLGIKVA----IKGECDEDERAILSLNESGKLNKLF 98 (193)
T ss_pred EEEeHHHHHHHHHHHHHHHHH---HHHhCC-HHHHHhHHhHHHHHHHHHHH----hcccccccccccccccccccCCCce
Confidence 445555554433333333221 123444 45665667889999999544 43321110000000 00000011
Q ss_pred --HHh--hccccch--hHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHH
Q 026849 126 --VLV--PALSPCA--TTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLK--FHWVERYDKLLVGSVL 197 (232)
Q Consensus 126 --v~~--l~lsPc~--a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~--~~~~ery~~~i~G~v~ 197 (232)
+.. .+-++|. -.+|++ +..+..+...++++|.+. +.+-.+..+-..+.+ .+.+|||.+.+.-.+.
T Consensus 99 ~~Va~iTiAnGgDNIgIYvPlF--a~~s~~~l~v~livF~il-----v~vwc~~a~~l~~~p~I~~~leryg~~lvp~Vl 171 (193)
T TIGR00779 99 LTVAFITIASGADNIGIYVPYF--VTLSMTNLLLTLIVFLIM-----VFFLCFTAYRLANFPGISETVEKYSRWIMPIVF 171 (193)
T ss_pred EEEEEEEEeccCceeEEEeeec--cCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCchHHHHHHHhCCeeeeeeE
Confidence 111 2445565 346876 445556666676676432 222223333333333 6899999999999999
Q ss_pred HHHhhhhhh
Q 026849 198 CLVGILTLI 206 (232)
Q Consensus 198 i~~Gi~~~~ 206 (232)
+++|+....
T Consensus 172 IgLGi~Il~ 180 (193)
T TIGR00779 172 IGLGIYIII 180 (193)
T ss_pred hhcCeeeeE
Confidence 999976543
No 41
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=75.72 E-value=14 Score=25.96 Aligned_cols=48 Identities=6% Similarity=0.251 Sum_probs=29.7
Q ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc--cchhHHHHHHHHHHHHH
Q 026849 44 TLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIA--GEDTVHKLASLLLVVLG 95 (232)
Q Consensus 44 s~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~--~~~~~e~~vG~~LI~lG 95 (232)
+.++.....+.-|+-+.+.+ .+...+|+++. ..++.|++.|.+|+.+|
T Consensus 18 ~~~~~~~~~~~ig~~~~~~~----~~G~~~G~~~~~~~~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 18 SRRIILLIALIIGIFQFIMP----LLGLLLGRRLGRFIGSYAEWIGGIILIFIG 67 (67)
T ss_pred ChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34445556665555544443 33345554444 26778999999999987
No 42
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=75.01 E-value=55 Score=28.37 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 026849 81 DTVHKLASLLLVVLGGSYI 99 (232)
Q Consensus 81 ~~~e~~vG~~LI~lG~~yl 99 (232)
+.++...|++|...|+-.+
T Consensus 73 ~afrIaGGiiL~~ia~~ml 91 (201)
T TIGR00427 73 DAFRIAGGILLFTIAMDML 91 (201)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6678999999999999443
No 43
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=73.49 E-value=37 Score=33.15 Aligned_cols=71 Identities=14% Similarity=0.082 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcchhH----HHHHHHHhhccccchhHHHHHHHhcchh-hHHHHHHHHH
Q 026849 84 HKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKM----AVAGLVLVPALSPCATTLPVFLAVGNSS-SMMVLAIIVL 158 (232)
Q Consensus 84 e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~~~~k~----~~~~Lv~~l~lsPc~a~lpl~L~a~~~~-~~~~lyilvF 158 (232)
+.+++.-|..+|+-.++-++. ++++. ...-+++|+ +.||-+...++..+..+. ...++|++.+
T Consensus 46 S~Iia~yl~amGlGs~~sry~-----------~dd~~~~~Fv~vElllgl-igg~Sa~~ly~~FA~~~~~~~~Vly~lt~ 113 (508)
T COG4262 46 SLIIAGYLAAMGLGSLLSRYV-----------LDDAALARFVDVELLLGL-IGGVSAAALYLLFALESAPSRLVLYALTA 113 (508)
T ss_pred HHHHHHHHHHhchhhhhhccc-----------cCchHHHHHHHHHHHHHH-hccchHHHHHHHHHhccchHHHHHHHHHH
Confidence 467777888888855533332 23332 112333443 345777777766666665 8899999999
Q ss_pred HHHHHHHH
Q 026849 159 LLSTITVM 166 (232)
Q Consensus 159 ~~gti~gM 166 (232)
.+|..+||
T Consensus 114 vIG~LVG~ 121 (508)
T COG4262 114 VIGVLVGA 121 (508)
T ss_pred HHHHHHhc
Confidence 99999887
No 44
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=73.41 E-value=32 Score=29.53 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=49.8
Q ss_pred HHHHhhccccchhHHHHHHHhcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----c--cchhHHHHHHHHHHHHH
Q 026849 124 GLVLVPALSPCATTLPVFLAVGNSS-SMMVLAIIVLLLSTITVMTSLVALSFYGAS----Q--LKFHWVERYDKLLVGSV 196 (232)
Q Consensus 124 ~Lv~~l~lsPc~a~lpl~L~a~~~~-~~~~lyilvF~~gti~gM~~~t~l~~~g~~----~--~~~~~~ery~~~i~G~v 196 (232)
++.++.+++|-+=.+++++-..+.+ ...+.|. .|..++-...+.....+.+ . ...+..-++.+.+.|.+
T Consensus 3 ~LAl~~a~sP~~i~~~vlll~~~r~~~~~~af~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ 78 (214)
T PF11139_consen 3 PLALVDALSPLPIVIAVLLLSRPRPRRNLLAFL----AGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVL 78 (214)
T ss_pred HHHHHHHhChHHHHHHHHHhcCCCccchhHHHH----HHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHH
Confidence 5666778899776666666554555 4454443 3333333333332222211 1 11577888999999999
Q ss_pred HHHHhhhhhhcc
Q 026849 197 LCLVGILTLIFH 208 (232)
Q Consensus 197 ~i~~Gi~~~~~~ 208 (232)
++++|.......
T Consensus 79 ll~~a~~~~~~~ 90 (214)
T PF11139_consen 79 LLLLAVRVWRRR 90 (214)
T ss_pred HHHHHHHHhhcc
Confidence 999999887776
No 45
>PF14007 YtpI: YtpI-like protein
Probab=73.10 E-value=9.1 Score=29.48 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHH--hhcccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 026849 63 TSLLGITAITMA--NTIAGEDTVHKLASLLLVVLGGSYILLFISG 105 (232)
Q Consensus 63 ~~llGl~~i~lg--~~i~~~~~~e~~vG~~LI~lG~~yl~~~~~~ 105 (232)
...+|..++.+| +.+.....+..++|.+.+++|+..++.++|+
T Consensus 36 ~ialG~fl~~fgiNQ~~~~~st~~~iV~~ifl~lG~~n~~~G~r~ 80 (89)
T PF14007_consen 36 NIALGIFLILFGINQMFLFGSTVRLIVGAIFLVLGLFNLFAGIRA 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445566555554 2222467789999999999999999877764
No 46
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=73.07 E-value=39 Score=31.14 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=23.8
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhhhhhhc
Q 026849 178 SQLKFHWVERYDKLLVGSVLCLVGILTLIF 207 (232)
Q Consensus 178 ~~~~~~~~ery~~~i~G~v~i~~Gi~~~~~ 207 (232)
+.++.+..++|.+.+++..++++|+.....
T Consensus 79 ~~~~~~~~~~~le~~S~~lii~lGl~ll~r 108 (279)
T PRK10019 79 RRFTAQSAEPWLQLISAVIIISTAFWMFWR 108 (279)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446789999999999999999876643
No 47
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=72.46 E-value=25 Score=29.12 Aligned_cols=80 Identities=23% Similarity=0.150 Sum_probs=56.9
Q ss_pred ccccchhHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-c-hhHHHHHHHHHHHHHHHHHhhhhhhc
Q 026849 130 ALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQL-K-FHWVERYDKLLVGSVLCLVGILTLIF 207 (232)
Q Consensus 130 ~lsPc~a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~-~-~~~~ery~~~i~G~v~i~~Gi~~~~~ 207 (232)
..+|-|..+-+.=.+.+.+ .-..+.+.+|..++-.....+...|.+.+ + .++++++.+.+.+..++-+|......
T Consensus 4 ~~~PGP~~~~~i~~~~~~G---~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~ 80 (191)
T PF01810_consen 4 AIPPGPVNLLVISNGLRKG---FKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRS 80 (191)
T ss_pred EecCCHHHHHHHHHHHHhC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566665554443444444 22234556788888888888888887654 3 78999999999999999999888766
Q ss_pred cCCCC
Q 026849 208 HDHHH 212 (232)
Q Consensus 208 ~~~~~ 212 (232)
.....
T Consensus 81 ~~~~~ 85 (191)
T PF01810_consen 81 KFSSK 85 (191)
T ss_pred ccCcc
Confidence 55544
No 48
>PRK11469 hypothetical protein; Provisional
Probab=68.05 E-value=11 Score=32.32 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=21.6
Q ss_pred HHHhhcc--cchhHHHHHHHHHHHHHHHHHHH
Q 026849 72 TMANTIA--GEDTVHKLASLLLVVLGGSYILL 101 (232)
Q Consensus 72 ~lg~~i~--~~~~~e~~vG~~LI~lG~~yl~~ 101 (232)
++|.++. ..+..|.+.|++|+.+|+..++.
T Consensus 153 ~lG~~~g~~~g~~a~~lgG~iLI~iGi~il~~ 184 (188)
T PRK11469 153 MVGRFIGSIIGKKAEILGGLVLIGIGVQILWT 184 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555443 25678999999999999965533
No 49
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=66.12 E-value=26 Score=25.96 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=33.4
Q ss_pred chhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 026849 45 LSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLG 95 (232)
Q Consensus 45 ~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~LI~lG 95 (232)
..+.+.+|. .+|+.+.+.+-..+.-++...+| .+++++++|.+.+.+|
T Consensus 31 ~~~~V~~G~--~~al~~~~~lav~~G~~l~~~ip-~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 31 NPWPVFAGA--TLALALATGLAVLLGSWLASRIP-ERYIKWVAGALFLLFG 78 (78)
T ss_pred chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHC
Confidence 344566666 45666666655555556667776 5889999999998886
No 50
>COG2119 Predicted membrane protein [Function unknown]
Probab=63.32 E-value=19 Score=31.48 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=40.7
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 026849 47 RTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFI 103 (232)
Q Consensus 47 rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~LI~lG~~yl~~~~ 103 (232)
..+.+|. .+||.+.+.+-.+..-++..++| ...++.++|++...+|+.|+ |+.
T Consensus 133 ~~V~~Gt--~lg~~l~s~laVl~G~~ia~ki~-~r~l~~~aallFl~fal~~~-~~~ 185 (190)
T COG2119 133 WAVFAGT--TLGMILASVLAVLLGKLIAGKLP-ERLLRFIAALLFLIFALVLL-WQV 185 (190)
T ss_pred eeeehhh--HHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3455666 78999988877766667777776 58889999999999999666 543
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=61.80 E-value=8.9 Score=31.16 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 026849 85 KLASLLLVVLGGSYILLFISGK 106 (232)
Q Consensus 85 ~~vG~~LI~lG~~yl~~~~~~~ 106 (232)
.++|++++.+.++|++||+|+|
T Consensus 73 v~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 73 VMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4678888888999998888765
No 52
>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function.
Probab=60.59 E-value=1.1e+02 Score=26.49 Aligned_cols=136 Identities=20% Similarity=0.117 Sum_probs=76.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhccc--------chhHHHHHHHHHHHHHHHHHHHHHhccC-CCCC-------C
Q 026849 49 LFVTAFGAVLHVLSTSLLGITAITMANTIAG--------EDTVHKLASLLLVVLGGSYILLFISGKG-GHSH-------S 112 (232)
Q Consensus 49 l~~~~~~GlGHtls~~llGl~~i~lg~~i~~--------~~~~e~~vG~~LI~lG~~yl~~~~~~~~-~h~H-------~ 112 (232)
...+..-..|-.+.=...|++...+...+.. ......+.|.+|++-|+|-+ -.++++- +|=| +
T Consensus 36 ~~~~~~f~~GYl~vW~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~Ll~AG~yQ~-sp~K~~cL~~Cr~p~~f~~~ 114 (191)
T PF09948_consen 36 ARSTALFVAGYLAVWLAFGLVATALQWALHQLALLSPMMASASPWLAGAVLLAAGLYQF-SPLKQACLNHCRSPLSFLAF 114 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHHHHHHhc-cHHHHHHHHHCCCcchHhhc
Confidence 4444555678888878888877666533321 12234788999999999655 3333210 0110 1
Q ss_pred CCCcch-hHHHHHHHHhhcccc-chhHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 026849 113 HNQPME-KMAVAGLVLVPALSP-CATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDK 190 (232)
Q Consensus 113 H~~~~~-k~~~~~Lv~~l~lsP-c~a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~ 190 (232)
|-.+.+ .+.-.|+-+|.--.. |-++..+. .+.++..+.-|..+|.+.. ++|.. -.+|+..
T Consensus 115 ~wr~g~~~alr~Gl~hG~~CvGCCWaLMllm--------------fv~G~mnl~wMa~lt~~~~--~EK~~--p~g~~l~ 176 (191)
T PF09948_consen 115 HWRAGARGALRMGLRHGLYCVGCCWALMLLM--------------FVVGVMNLAWMAALTALMF--AEKLL--PWGRRLS 176 (191)
T ss_pred CCCcccchHHHHHHHHccHHHHHHHHHHHHH--------------HHhccccHHHHHHHHHHHH--HHHhC--CcchHHH
Confidence 222222 345568888843222 54543332 2444555677777777655 23321 2356666
Q ss_pred HHHHHHHHHHhhh
Q 026849 191 LLVGSVLCLVGIL 203 (232)
Q Consensus 191 ~i~G~v~i~~Gi~ 203 (232)
...|.++++.|+.
T Consensus 177 r~~G~~l~~~g~~ 189 (191)
T PF09948_consen 177 RAVGVALIVWGVL 189 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888764
No 53
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=58.07 E-value=22 Score=23.74 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 026849 156 IVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKL 191 (232)
Q Consensus 156 lvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~ 191 (232)
...+++|++-+++|.....+.+++.|.++.|++.+.
T Consensus 9 ~~~~~~~v~~~~~F~gi~~w~~~~~~k~~~e~aa~l 44 (49)
T PF05545_consen 9 FARSIGTVLFFVFFIGIVIWAYRPRNKKRFEEAANL 44 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHcc
Confidence 355677888888999988999888888888887654
No 54
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=54.19 E-value=35 Score=26.26 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 026849 161 STITVMTSLVALSFYGASQLKFHWVERYDKLLVGSV 196 (232)
Q Consensus 161 gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v 196 (232)
|+++||+.+-.++. .+..|.+|+|+..+.+..-.
T Consensus 18 gsviGmllL~~~L~--~~~vk~~~i~~~a~~Ll~~m 51 (96)
T PF03788_consen 18 GSVIGMLLLFLLLM--FKIVKLEWIEPAANFLLKNM 51 (96)
T ss_pred hHHHHHHHHHHHHH--cCCccHHHHHHHHHHHHHHH
Confidence 67889988888777 45566678888777555433
No 55
>PRK10739 putative antibiotic transporter; Provisional
Probab=51.49 E-value=1.6e+02 Score=25.50 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 026849 81 DTVHKLASLLLVVLGGSYI 99 (232)
Q Consensus 81 ~~~e~~vG~~LI~lG~~yl 99 (232)
..++...|++|..+|+-.+
T Consensus 70 ~afrIAGGilL~~ial~ml 88 (197)
T PRK10739 70 ETVSISGGIILFLIAIKMI 88 (197)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6678999999999999443
No 56
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=47.79 E-value=2.5e+02 Score=29.37 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=20.8
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 026849 72 TMANTIAGEDTVHKLASLLLVVLGGSYILL 101 (232)
Q Consensus 72 ~lg~~i~~~~~~e~~vG~~LI~lG~~yl~~ 101 (232)
++|..+ ...+..+..+||.+|+-|-+.
T Consensus 243 llG~pl---t~~s~~~~~llIgiGidy~vh 269 (727)
T COG1033 243 LLGIPL---TITTSAVPPLLIGIGIDYGVH 269 (727)
T ss_pred HhCCCc---hhHHHHHHHHHhhhhhhHHHH
Confidence 555443 566789999999999999863
No 57
>COG1971 Predicted membrane protein [Function unknown]
Probab=47.77 E-value=42 Score=29.34 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 026849 80 EDTVHKLASLLLVVLGGSYI 99 (232)
Q Consensus 80 ~~~~e~~vG~~LI~lG~~yl 99 (232)
+.+.|.+.|++||.+|.+.+
T Consensus 165 g~~ae~lgGiiLI~~G~~iL 184 (190)
T COG1971 165 GKYAEILGGIILIGIGVKIL 184 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999555
No 58
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=47.08 E-value=2.8e+02 Score=26.96 Aligned_cols=32 Identities=9% Similarity=-0.270 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026849 149 SMMVLAIIVLLLSTITVMTSLVALSFYGASQL 180 (232)
Q Consensus 149 ~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~ 180 (232)
.+-.-.-..++.|+.+||..-..+..++.++.
T Consensus 244 ~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~ 275 (403)
T PF03209_consen 244 GETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK 275 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 34444567899999999998877766554443
No 59
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=43.91 E-value=77 Score=26.79 Aligned_cols=14 Identities=0% Similarity=0.002 Sum_probs=8.1
Q ss_pred cchhHHHHHHHHhh
Q 026849 44 TLSRTLFVTAFGAV 57 (232)
Q Consensus 44 s~~rtl~~~~~~Gl 57 (232)
+..+....|+++|+
T Consensus 117 ~~~~~~~lG~l~gl 130 (199)
T PF13386_consen 117 GPWGAFLLGFLNGL 130 (199)
T ss_pred CccHHHHHHHHHHH
Confidence 34445666666665
No 60
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=37.80 E-value=1.4e+02 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.637 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 026849 183 HWVERYDKLLVGSVLCLVG 201 (232)
Q Consensus 183 ~~~ery~~~i~G~v~i~~G 201 (232)
+++++|.+.+.|.+++.+|
T Consensus 49 ~~~~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 49 RFIGSYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 4788999999999999887
No 61
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=33.79 E-value=3.5e+02 Score=24.24 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhcccchhH----HHHHHHHHHHHHHHHHHHHHh
Q 026849 61 LSTSLLGITAITMANTIAGEDTV----HKLASLLLVVLGGSYILLFIS 104 (232)
Q Consensus 61 ls~~llGl~~i~lg~~i~~~~~~----e~~vG~~LI~lG~~yl~~~~~ 104 (232)
+..+++|++.++.+..++....+ -...|+++.++-+.|+..++.
T Consensus 14 ~~~~v~Gi~Lf~~A~~LS~s~~FyY~sg~~lGv~~s~li~~~~~~k~l 61 (249)
T PF10225_consen 14 VAQFVLGIVLFFLAPSLSRSVLFYYSSGISLGVLASLLILLFQLSKLL 61 (249)
T ss_pred HHHHHHHHHHHHHhHHhccChhHHHhhhHHHHHHHHHHHHHHHHHHHc
Confidence 45678899888888877643333 356777777777766655554
No 62
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.85 E-value=1.8e+02 Score=24.22 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH
Q 026849 85 KLASLLLVVLGGSYI 99 (232)
Q Consensus 85 ~~vG~~LI~lG~~yl 99 (232)
.+.|.+|+..|+.++
T Consensus 46 lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 46 LALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455888888888655
No 63
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=31.97 E-value=2e+02 Score=27.93 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhcc
Q 026849 90 LLVVLGGSYILLFISGK 106 (232)
Q Consensus 90 ~LI~lG~~yl~~~~~~~ 106 (232)
=||+-++.|.+|.-.++
T Consensus 187 SLIaAavlyvmWknigr 203 (441)
T PF03189_consen 187 SLIAAAVLYVMWKNIGR 203 (441)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 47788888998876655
No 64
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=31.05 E-value=1.3e+02 Score=24.21 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccC
Q 026849 81 DTVHKLASLLLVVLGGSYILLFISGKG 107 (232)
Q Consensus 81 ~~~e~~vG~~LI~lG~~yl~~~~~~~~ 107 (232)
.....++|++++..|+.|+..++...+
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l~~~~~~ 111 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIILGFFCPI 111 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 667899999999999999988777643
No 65
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=30.61 E-value=92 Score=22.20 Aligned_cols=26 Identities=12% Similarity=-0.092 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhc
Q 026849 80 EDTVHKLASLLLVVLGGSYILLFISG 105 (232)
Q Consensus 80 ~~~~e~~vG~~LI~lG~~yl~~~~~~ 105 (232)
+..+=.++|+.|+..|+|.+.+.+++
T Consensus 46 G~~ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 46 GRWLLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555689999999999888777664
No 66
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=29.12 E-value=1.6e+02 Score=23.26 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhh
Q 026849 150 MMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGI 202 (232)
Q Consensus 150 ~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi 202 (232)
..+++++.|-+|+.+| +.++|+|.+....||....+.=.+.++=|+
T Consensus 4 ~~li~~i~fiiGs~~G-------L~ySYkKy~~P~v~k~iD~~ALv~aiiG~~ 49 (99)
T PF09877_consen 4 ILLIYIILFIIGSFLG-------LEYSYKKYREPFVEKKIDKLALVLAIIGGL 49 (99)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHhccchhhhcccHHHHHHHHHHHH
Confidence 4567888888888887 457888888888888877665555554444
No 67
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=28.08 E-value=1.5e+02 Score=21.83 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 026849 160 LSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVG 201 (232)
Q Consensus 160 ~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~G 201 (232)
.|+.+++.+.+.+....=+.+...-=+|+.+.++|...+++|
T Consensus 37 ~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 37 AGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 566666666666554321222112236778888888888776
No 68
>PRK01821 hypothetical protein; Provisional
Probab=26.75 E-value=1.7e+02 Score=24.05 Aligned_cols=14 Identities=29% Similarity=0.169 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 026849 161 STITVMTSLVALSF 174 (232)
Q Consensus 161 gti~gM~~~t~l~~ 174 (232)
|+++||+++-.++.
T Consensus 38 GsViGmlLLf~~L~ 51 (133)
T PRK01821 38 GSIIGMLILFVLLA 51 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555444443
No 69
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=24.32 E-value=4.3e+02 Score=22.17 Aligned_cols=79 Identities=14% Similarity=0.051 Sum_probs=56.2
Q ss_pred HhhccccchhHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHhhhh
Q 026849 127 LVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQL--KFHWVERYDKLLVGSVLCLVGILT 204 (232)
Q Consensus 127 ~~l~lsPc~a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~--~~~~~ery~~~i~G~v~i~~Gi~~ 204 (232)
.....+|-|..+.+.=.+.+.+. -....+.+|...|..+...+...|...+ ..+++....+.+.+.-++-+|+..
T Consensus 14 ~~~~~sPGP~~~~v~~~~~~~G~---r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~ 90 (205)
T PRK10520 14 IILSLSPGSGAINTMSTSISHGY---RGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQ 90 (205)
T ss_pred HHHhcCCchhHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33688898887766545555552 2224455788888888888777766532 357888899999999999999987
Q ss_pred hhcc
Q 026849 205 LIFH 208 (232)
Q Consensus 205 ~~~~ 208 (232)
....
T Consensus 91 ~~s~ 94 (205)
T PRK10520 91 WRAA 94 (205)
T ss_pred HhCC
Confidence 7653
No 70
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=22.70 E-value=1.1e+02 Score=21.28 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q 026849 183 HWVERYDKLLVGSVLCLVGILT 204 (232)
Q Consensus 183 ~~~ery~~~i~G~v~i~~Gi~~ 204 (232)
...||..+.+.|++++..|+..
T Consensus 6 g~~dR~~R~~~G~~l~~~~~~~ 27 (66)
T PF11127_consen 6 GTTDRIVRIIIGIVLLALGLLG 27 (66)
T ss_pred chHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555443
No 71
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=22.27 E-value=1.8e+02 Score=23.83 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 026849 161 STITVMTSLVALSFYGASQLKFHWVERYDK 190 (232)
Q Consensus 161 gti~gM~~~t~l~~~g~~~~~~~~~ery~~ 190 (232)
|+++||+++-.++..+ ..+.+|+|+-..
T Consensus 34 GsIiGmvLLfllL~~~--iv~l~wv~~~a~ 61 (128)
T COG1380 34 GSIIGMVLLFLLLALK--IVKLEWVERGAT 61 (128)
T ss_pred hhHHHHHHHHHHHHhC--CccHHHHHHHHH
Confidence 4566666665554433 333445555444
No 72
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=21.66 E-value=2.1e+02 Score=22.48 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhh
Q 026849 182 FHWVERYDKLLVGSVLCLVGILTL 205 (232)
Q Consensus 182 ~~~~ery~~~i~G~v~i~~Gi~~~ 205 (232)
-...+||.+.++|+++++.=+...
T Consensus 26 ~~~~kkYvr~v~Gl~Li~~il~Pi 49 (106)
T TIGR02896 26 NSSLKKYVKFVVGLILMVVILNPI 49 (106)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999986654444
No 73
>PRK01658 holin-like protein; Validated
Probab=21.38 E-value=2.1e+02 Score=23.02 Aligned_cols=12 Identities=25% Similarity=0.177 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 026849 162 TITVMTSLVALS 173 (232)
Q Consensus 162 ti~gM~~~t~l~ 173 (232)
+++||+++-.++
T Consensus 34 sViGmlLL~~~L 45 (122)
T PRK01658 34 SIIGIFLLLLLL 45 (122)
T ss_pred HHHHHHHHHHHH
Confidence 444554444433
No 74
>COG2370 HupE Hydrogenase/urease accessory protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.17 E-value=5.8e+02 Score=22.55 Aligned_cols=70 Identities=19% Similarity=0.116 Sum_probs=38.7
Q ss_pred HHHHhhhhccc-CCCchhhhhhcc----ccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 026849 17 IATVSLLHSFI-PTHWLPFSIVGR----AQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLL 91 (232)
Q Consensus 17 gf~Lg~lHAl~-PdH~~pv~~i~~----~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~L 91 (232)
||.-|+.|=+. +||....++++- +++ .+ .+.++-+.=+ .+.++|...=..+.++| .+|.....-.
T Consensus 37 gF~aG~~HPl~GlDHL~~mvAVGlw~a~aag--~~----~~~~~p~aFV-~~mi~G~llgl~gv~LP---fvE~~Ia~Sv 106 (201)
T COG2370 37 GFLAGVAHPLTGLDHLLAMVAVGLWAALAAG--IR----AGWLVPLAFV-ATMILGALLGLSGVHLP---FVEPGIAASV 106 (201)
T ss_pred hhhhhccCccccHHHHHHHHHHHHHHHHhcc--hh----hhHHhHHHHH-HHHHHHHHHhhccCCCC---cchHHHHHHH
Confidence 48888999888 999988776653 111 11 1122222222 23344444445556665 3455555556
Q ss_pred HHHHH
Q 026849 92 VVLGG 96 (232)
Q Consensus 92 I~lG~ 96 (232)
+.+|+
T Consensus 107 ~~~Gl 111 (201)
T COG2370 107 LGLGL 111 (201)
T ss_pred HHHHH
Confidence 67777
No 75
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=20.93 E-value=4.7e+02 Score=21.35 Aligned_cols=52 Identities=25% Similarity=0.197 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHhhhhhhc
Q 026849 156 IVLLLSTITVMTSLVALSFYGASQL--KFHWVERYDKLLVGSVLCLVGILTLIF 207 (232)
Q Consensus 156 lvF~~gti~gM~~~t~l~~~g~~~~--~~~~~ery~~~i~G~v~i~~Gi~~~~~ 207 (232)
+.+.+|..+|......+...|.+.+ ..+++..+.+.+.+.-++-+|......
T Consensus 22 ~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 22 VLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455778888888887777766532 257888999999999999999876653
No 76
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=20.83 E-value=2.7e+02 Score=18.65 Aligned_cols=25 Identities=8% Similarity=0.111 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh
Q 026849 80 EDTVHKLASLLLVVLGGSYILLFIS 104 (232)
Q Consensus 80 ~~~~e~~vG~~LI~lG~~yl~~~~~ 104 (232)
......+.|+.++.-|+..+...++
T Consensus 21 ~~~~~~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 21 LAALAIILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556789999999999988855554
Done!