Query 026849
Match_columns 232
No_of_seqs 108 out of 120
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:43:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jo1_A Phospholemman; FXYD1, N 30.4 55 0.0019 23.3 3.7 34 85-118 21-55 (72)
2 2l9u_A Receptor tyrosine-prote 28.3 51 0.0017 20.5 2.8 12 92-103 21-32 (40)
3 2l8s_A Integrin alpha-1; trans 27.5 70 0.0024 21.5 3.7 18 83-101 14-31 (54)
4 2xq2_A Sodium/glucose cotransp 20.6 74 0.0025 30.2 3.8 24 84-107 549-579 (593)
5 2ks1_B Epidermal growth factor 15.9 1E+02 0.0035 19.7 2.5 14 86-99 21-34 (44)
6 3rlb_A THIT; S-component, ECF 15.4 2.2E+02 0.0076 23.3 5.1 33 131-163 45-78 (192)
7 2l2t_A Receptor tyrosine-prote 15.3 1E+02 0.0034 19.8 2.3 13 87-99 21-33 (44)
8 3dh4_A Sodium/glucose cotransp 14.6 94 0.0032 29.0 2.9 23 85-107 498-520 (530)
9 4fc4_A Nitrite transporter NIR 14.3 87 0.003 27.1 2.4 10 46-55 151-160 (261)
10 2jp3_A FXYD domain-containing 12.7 1E+02 0.0036 21.6 2.0 30 85-114 22-52 (67)
No 1
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=30.45 E-value=55 Score=23.28 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCCCCCCCCcch
Q 026849 85 KLASLLLVVLGGSYILLFISG-KGGHSHSHNQPME 118 (232)
Q Consensus 85 ~~vG~~LI~lG~~yl~~~~~~-~~~h~H~H~~~~~ 118 (232)
.+.+.+|.++|+..++..-.+ +.+++|++..|++
T Consensus 21 LifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~ 55 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRCRCKFNQQQRTGEPDE 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCT
T ss_pred hHHHHHHHHHHHHHHHcCccccCCCCCCCCCCCcc
Confidence 577888999999777655444 5556667765543
No 2
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=28.31 E-value=51 Score=20.52 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 026849 92 VVLGGSYILLFI 103 (232)
Q Consensus 92 I~lG~~yl~~~~ 103 (232)
..+|-.++.|+=
T Consensus 21 ~~lg~tflywrg 32 (40)
T 2l9u_A 21 MMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhCceeEEEcc
Confidence 346666664543
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=27.53 E-value=70 Score=21.53 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026849 83 VHKLASLLLVVLGGSYILL 101 (232)
Q Consensus 83 ~e~~vG~~LI~lG~~yl~~ 101 (232)
...++|++|.++-+ |++|
T Consensus 14 ~svl~GLLLL~Lii-~~Lw 31 (54)
T 2l8s_A 14 LSAFAGLLLLMLLI-LALW 31 (54)
T ss_dssp HHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHH-HHHH
Confidence 35667777766655 4444
No 4
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=20.59 E-value=74 Score=30.18 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHhccC
Q 026849 84 HKLASLLLVVLGGS-------YILLFISGKG 107 (232)
Q Consensus 84 e~~vG~~LI~lG~~-------yl~~~~~~~~ 107 (232)
.....+.++..|++ |-++++++++
T Consensus 549 ~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (593)
T 2xq2_A 549 EITLIIFGVMAGVIGTILLISYGIKKLIKAS 579 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444555555554 4446666654
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.92 E-value=1e+02 Score=19.70 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 026849 86 LASLLLVVLGGSYI 99 (232)
Q Consensus 86 ~vG~~LI~lG~~yl 99 (232)
++++.++++++|++
T Consensus 21 v~~~~ii~~~~~~~ 34 (44)
T 2ks1_B 21 LLLLLVVALGIGLF 34 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555555
No 6
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=15.36 E-value=2.2e+02 Score=23.34 Aligned_cols=33 Identities=6% Similarity=0.116 Sum_probs=22.5
Q ss_pred cccchhHHHHHHHhcchh-hHHHHHHHHHHHHHH
Q 026849 131 LSPCATTLPVFLAVGNSS-SMMVLAIIVLLLSTI 163 (232)
Q Consensus 131 lsPc~a~lpl~L~a~~~~-~~~~lyilvF~~gti 163 (232)
++.....+|+++.+...+ ..+++..+++++-..
T Consensus 45 ~~it~~~iPiii~a~~~Gp~~G~~~g~i~gll~~ 78 (192)
T 3rlb_A 45 IIVEIACIPILLLSLRRGLTAGLVGGLIWGILSM 78 (192)
T ss_dssp EECCGGGHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 344456789999888888 666666666665544
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=15.32 E-value=1e+02 Score=19.82 Aligned_cols=13 Identities=23% Similarity=0.043 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 026849 87 ASLLLVVLGGSYI 99 (232)
Q Consensus 87 vG~~LI~lG~~yl 99 (232)
+++.+++++.|++
T Consensus 21 ~~v~ii~~~~~~~ 33 (44)
T 2l2t_A 21 FILVIVGLTFAVY 33 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555455
No 8
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=14.61 E-value=94 Score=29.00 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 026849 85 KLASLLLVVLGGSYILLFISGKG 107 (232)
Q Consensus 85 ~~vG~~LI~lG~~yl~~~~~~~~ 107 (232)
....++++...++.+.|++++.+
T Consensus 498 ~~~~~~~~~~~~y~~f~~~~~~~ 520 (530)
T 3dh4_A 498 AAYGIMIVLAVLYTLFWVLYKSG 520 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45556666677766668877643
No 9
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=14.26 E-value=87 Score=27.08 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=4.1
Q ss_pred hhHHHHHHHH
Q 026849 46 SRTLFVTAFG 55 (232)
Q Consensus 46 ~rtl~~~~~~ 55 (232)
.++..-++.|
T Consensus 151 ~~~f~~gIlc 160 (261)
T 4fc4_A 151 TVLFFKGALC 160 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=12.67 E-value=1e+02 Score=21.57 Aligned_cols=30 Identities=20% Similarity=0.089 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCCCCCCC
Q 026849 85 KLASLLLVVLGGSYILLFISG-KGGHSHSHN 114 (232)
Q Consensus 85 ~~vG~~LI~lG~~yl~~~~~~-~~~h~H~H~ 114 (232)
.+.+.+|.++|+..++..-.+ ++++++++.
T Consensus 22 LifA~vLfi~GI~iilS~kcrCk~~qk~~~~ 52 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCKCRRNHTPSSL 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHTCCTTTS
T ss_pred hhhHHHHHHHHHHHHHcCcccccCCCCCCCC
Confidence 577888999999777643222 444444443
Done!