Query 026849
Match_columns 232
No_of_seqs 108 out of 120
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 23:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026849.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026849hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 23.4 51 0.0037 18.4 3.6 17 158-174 4-20 (34)
2 d1iwga8 f.35.1.1 (A:513-566,A: 9.8 3.3E+02 0.024 20.1 7.4 15 134-148 169-183 (222)
3 d2axtj1 f.23.32.1 (J:7-40) Pho 8.4 1.8E+02 0.013 16.2 3.4 16 159-174 6-21 (34)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 5.2 2.9E+02 0.021 20.1 3.9 18 81-98 92-109 (199)
5 d1ljra1 a.45.1.1 (A:80-244) Cl 3.3 1.2E+02 0.0084 21.2 -0.1 11 28-38 2-12 (165)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 3.3 1.3E+02 0.0094 19.8 0.2 10 98-107 38-47 (91)
7 d1v54c_ f.25.1.1 (C:) Mitochon 2.3 1.2E+03 0.084 17.4 11.7 25 83-107 39-63 (259)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 2.1 5.6E+02 0.041 13.1 2.5 9 172-180 13-21 (27)
9 d1pu6a_ a.96.1.5 (A:) 3-Methyl 1.7 4.3E+02 0.031 19.6 1.4 22 27-48 19-49 (217)
10 d2axtz1 f.17.5.1 (Z:1-62) Phot 1.7 9.5E+02 0.069 14.6 3.8 16 37-52 27-42 (62)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=23.43 E-value=51 Score=18.38 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026849 158 LLLSTITVMTSLVALSF 174 (232)
Q Consensus 158 F~~gti~gM~~~t~l~~ 174 (232)
|-.||...|..++.+..
T Consensus 4 fiagta~tmig~tl~gl 20 (34)
T d1q90m_ 4 FIAGTALTMVGMTLVGL 20 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHHH
Confidence 55778877777777554
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.84 E-value=3.3e+02 Score=20.14 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=9.1
Q ss_pred chhHHHHHHHhcchh
Q 026849 134 CATTLPVFLAVGNSS 148 (232)
Q Consensus 134 c~a~lpl~L~a~~~~ 148 (232)
..+++|+.++.+..+
T Consensus 169 i~gf~pl~~~~~~g~ 183 (222)
T d1iwga8 169 ILGVMPLVISTGAGS 183 (222)
T ss_dssp HHHHHHHHTTCSSSC
T ss_pred HHHHHHHHhccccHH
Confidence 446777877655533
No 3
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.45 E-value=1.8e+02 Score=16.15 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026849 159 LLSTITVMTSLVALSF 174 (232)
Q Consensus 159 ~~gti~gM~~~t~l~~ 174 (232)
-++|+.||..++.+..
T Consensus 6 lv~tv~G~~vi~~vG~ 21 (34)
T d2axtj1 6 IVATVAGMGVIVIVGL 21 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheee
Confidence 3678888888777433
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.16 E-value=2.9e+02 Score=20.11 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 026849 81 DTVHKLASLLLVVLGGSY 98 (232)
Q Consensus 81 ~~~e~~vG~~LI~lG~~y 98 (232)
.........+++.+++-|
T Consensus 92 ~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 92 NTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 345556666666666655
No 5
>d1ljra1 a.45.1.1 (A:80-244) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.28 E-value=1.2e+02 Score=21.21 Aligned_cols=11 Identities=36% Similarity=1.057 Sum_probs=7.3
Q ss_pred CCCchhhhhhc
Q 026849 28 PTHWLPFSIVG 38 (232)
Q Consensus 28 PdH~~pv~~i~ 38 (232)
||||-|--...
T Consensus 2 Pdh~YP~D~~~ 12 (165)
T d1ljra1 2 PDHWYPSDLQA 12 (165)
T ss_dssp CGGGSCCSHHH
T ss_pred CCCCCCcCHHH
Confidence 88988854433
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.27 E-value=1.3e+02 Score=19.76 Aligned_cols=10 Identities=0% Similarity=-0.267 Sum_probs=6.0
Q ss_pred HHHHHHhccC
Q 026849 98 YILLFISGKG 107 (232)
Q Consensus 98 yl~~~~~~~~ 107 (232)
|++++||+++
T Consensus 38 ~~~~ryR~~~ 47 (91)
T d1fftb2 38 GFAWKYRASN 47 (91)
T ss_dssp TTTTTTTTST
T ss_pred hhheeeeccC
Confidence 4457777654
No 7
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.27 E-value=1.2e+03 Score=17.36 Aligned_cols=25 Identities=8% Similarity=-0.161 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Q 026849 83 VHKLASLLLVVLGGSYILLFISGKG 107 (232)
Q Consensus 83 ~e~~vG~~LI~lG~~yl~~~~~~~~ 107 (232)
.-..+|..++.+..+.-.|+..++.
T Consensus 39 ~~~~~gl~~~~~~~~~W~rdvi~E~ 63 (259)
T d1v54c_ 39 TLLMIGLTTNMLTMYQWWRDVIRES 63 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456677777777744445555543
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.06 E-value=5.6e+02 Score=13.07 Aligned_cols=9 Identities=22% Similarity=0.198 Sum_probs=3.8
Q ss_pred HHHHHhhcc
Q 026849 172 LSFYGASQL 180 (232)
Q Consensus 172 l~~~g~~~~ 180 (232)
++++.|++.
T Consensus 13 lf~aayqqy 21 (27)
T d2e74g1 13 LFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 334444433
No 9
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}
Probab=1.71 E-value=4.3e+02 Score=19.57 Aligned_cols=22 Identities=23% Similarity=0.644 Sum_probs=13.2
Q ss_pred cCCCchh----h----h-hhccccCccchhH
Q 026849 27 IPTHWLP----F----S-IVGRAQKWTLSRT 48 (232)
Q Consensus 27 ~PdH~~p----v----~-~i~~~~kws~~rt 48 (232)
-|-||+| | + .++++.+|+..+.
T Consensus 19 ~P~~W~~~~~pfe~lv~aIL~Qqts~~~a~~ 49 (217)
T d1pu6a_ 19 APAWWWPNALKFEALLGAVLTQNTKFEAVLK 49 (217)
T ss_dssp SCTTSSTTTTSHHHHHHHHHTTTSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 4899986 2 2 4666666654433
No 10
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.69 E-value=9.5e+02 Score=14.62 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=10.4
Q ss_pred hccccCccchhHHHHH
Q 026849 37 VGRAQKWTLSRTLFVT 52 (232)
Q Consensus 37 i~~~~kws~~rtl~~~ 52 (232)
.++.++|+.+|-+..+
T Consensus 27 ~ASP~gW~~sK~lvfs 42 (62)
T d2axtz1 27 YASPQDWDRSKQLIFL 42 (62)
T ss_dssp HHCCTTTTHHHHHHHH
T ss_pred EECCCcccccCceEEE
Confidence 4457778887766543
Done!