Query 026853
Match_columns 232
No_of_seqs 168 out of 1195
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 13:38:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02940 riboflavin kinase 100.0 2.5E-36 5.4E-41 235.7 21.8 222 7-228 9-230 (382)
2 PRK10826 2-deoxyglucose-6-phos 100.0 7.6E-35 1.6E-39 213.6 20.8 210 7-217 5-218 (222)
3 COG0546 Gph Predicted phosphat 100.0 4.3E-35 9.4E-40 213.8 18.0 211 7-219 2-218 (220)
4 TIGR03351 PhnX-like phosphonat 100.0 9.3E-35 2E-39 213.0 17.8 208 9-217 1-218 (220)
5 TIGR01449 PGP_bact 2-phosphogl 100.0 1.7E-34 3.7E-39 210.8 18.6 205 12-217 1-212 (213)
6 PRK13288 pyrophosphatase PpaX; 100.0 9.9E-35 2.2E-39 211.9 17.2 205 8-218 2-210 (214)
7 PLN02770 haloacid dehalogenase 100.0 2E-34 4.3E-39 214.0 18.4 205 7-214 20-231 (248)
8 PRK13226 phosphoglycolate phos 100.0 1.6E-34 3.5E-39 212.3 16.7 211 6-218 9-224 (229)
9 PLN03243 haloacid dehalogenase 100.0 3.6E-34 7.8E-39 212.7 17.9 209 8-219 23-235 (260)
10 TIGR01422 phosphonatase phosph 100.0 4.1E-34 8.9E-39 213.6 17.6 209 9-218 2-252 (253)
11 PRK10563 6-phosphogluconate ph 100.0 1.6E-33 3.4E-38 206.6 19.6 208 8-219 3-213 (221)
12 PLN02575 haloacid dehalogenase 100.0 1.5E-33 3.1E-38 216.2 19.1 207 8-216 130-339 (381)
13 PRK13478 phosphonoacetaldehyde 100.0 4.7E-34 1E-38 214.6 16.0 213 7-220 2-256 (267)
14 PRK11587 putative phosphatase; 100.0 1.7E-33 3.6E-38 205.7 18.3 202 8-217 2-206 (218)
15 COG0637 Predicted phosphatase/ 100.0 1.9E-33 4.1E-38 204.6 18.0 209 8-217 1-215 (221)
16 PRK13222 phosphoglycolate phos 100.0 9.1E-33 2E-37 203.5 19.5 212 7-219 4-222 (226)
17 PRK13223 phosphoglycolate phos 100.0 3.7E-33 8.1E-38 209.4 17.7 212 7-219 11-230 (272)
18 TIGR02253 CTE7 HAD superfamily 100.0 2.1E-33 4.6E-38 206.1 16.0 207 8-215 1-221 (221)
19 PRK10725 fructose-1-P/6-phosph 100.0 3.4E-32 7.4E-37 194.8 20.4 183 7-192 3-186 (188)
20 TIGR01454 AHBA_synth_RP 3-amin 100.0 1.4E-32 2.9E-37 199.3 16.5 200 12-219 1-204 (205)
21 PRK13225 phosphoglycolate phos 100.0 5.1E-32 1.1E-36 202.4 16.7 204 8-219 61-268 (273)
22 TIGR02254 YjjG/YfnB HAD superf 100.0 9.5E-32 2.1E-36 197.8 17.2 204 9-218 1-224 (224)
23 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 4.5E-31 9.7E-36 188.6 19.6 180 9-191 1-185 (185)
24 TIGR01990 bPGM beta-phosphoglu 100.0 4.2E-31 9E-36 188.8 19.0 179 11-192 1-185 (185)
25 PRK09449 dUMP phosphatase; Pro 100.0 2E-31 4.2E-36 196.0 16.4 202 8-218 2-222 (224)
26 PRK06698 bifunctional 5'-methy 100.0 3.3E-31 7.1E-36 212.9 16.6 213 2-219 234-454 (459)
27 PLN02811 hydrolase 100.0 2.5E-30 5.3E-35 189.2 19.7 203 16-218 1-210 (220)
28 PLN02779 haloacid dehalogenase 100.0 4.1E-30 8.9E-35 194.1 19.2 208 7-217 38-271 (286)
29 TIGR01428 HAD_type_II 2-haloal 100.0 2.6E-30 5.7E-35 186.4 17.3 180 9-195 1-195 (198)
30 PRK10748 flavin mononucleotide 100.0 2.5E-30 5.5E-35 191.0 14.8 205 7-218 8-238 (238)
31 PF13419 HAD_2: Haloacid dehal 100.0 3.4E-30 7.5E-35 182.5 14.2 175 12-191 1-176 (176)
32 PRK14988 GMP/IMP nucleotidase; 100.0 1.8E-30 3.8E-35 189.9 12.4 108 88-196 90-198 (224)
33 PLN02919 haloacid dehalogenase 100.0 2.1E-29 4.6E-34 217.7 20.8 211 6-217 72-288 (1057)
34 TIGR02252 DREG-2 REG-2-like, H 100.0 3.9E-29 8.4E-34 181.1 17.2 178 10-190 1-203 (203)
35 KOG2914 Predicted haloacid-hal 100.0 3.8E-28 8.3E-33 173.2 19.5 212 5-216 6-220 (222)
36 COG1011 Predicted hydrolase (H 100.0 3.1E-28 6.7E-33 179.7 16.1 129 89-219 97-227 (229)
37 TIGR01548 HAD-SF-IA-hyp1 haloa 100.0 3.3E-27 7.2E-32 169.9 17.6 173 10-184 1-197 (197)
38 TIGR01509 HAD-SF-IA-v3 haloaci 100.0 4E-27 8.7E-32 168.0 16.5 175 11-191 1-183 (183)
39 TIGR02247 HAD-1A3-hyp Epoxide 100.0 3E-27 6.4E-32 172.2 15.7 179 9-193 2-197 (211)
40 PRK09456 ?-D-glucose-1-phospha 100.0 4.4E-27 9.5E-32 169.5 15.8 177 10-194 1-187 (199)
41 PHA02597 30.2 hypothetical pro 99.9 5.6E-27 1.2E-31 168.9 13.9 189 8-216 1-196 (197)
42 TIGR01993 Pyr-5-nucltdase pyri 99.9 8.9E-27 1.9E-31 166.1 13.4 168 10-191 1-184 (184)
43 TIGR00338 serB phosphoserine p 99.9 8.4E-26 1.8E-30 165.5 12.6 192 6-216 11-217 (219)
44 KOG3085 Predicted hydrolase (H 99.9 2.1E-25 4.6E-30 159.6 13.9 187 6-194 4-215 (237)
45 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 6.3E-25 1.4E-29 152.2 15.7 154 11-185 1-154 (154)
46 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 1.9E-25 4.1E-30 158.1 11.0 161 11-184 1-175 (175)
47 PLN02954 phosphoserine phospha 99.9 2.3E-24 4.9E-29 158.5 12.9 196 6-217 9-222 (224)
48 TIGR01691 enolase-ppase 2,3-di 99.9 5.1E-23 1.1E-27 148.6 18.7 184 9-195 1-199 (220)
49 KOG3109 Haloacid dehalogenase- 99.9 3.4E-23 7.4E-28 143.2 15.2 211 7-223 13-235 (244)
50 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 2.4E-23 5.3E-28 150.6 14.1 106 87-193 76-191 (201)
51 PRK11133 serB phosphoserine ph 99.9 2.7E-23 5.9E-28 158.2 12.6 184 7-209 108-304 (322)
52 PRK06769 hypothetical protein; 99.9 1.4E-23 3.1E-28 147.3 9.7 128 90-218 27-171 (173)
53 PRK08942 D,D-heptose 1,7-bisph 99.9 1.2E-23 2.6E-28 149.3 9.4 127 90-219 28-177 (181)
54 TIGR00213 GmhB_yaeD D,D-heptos 99.9 2.8E-23 6.1E-28 146.6 10.7 123 90-215 25-175 (176)
55 TIGR01656 Histidinol-ppas hist 99.9 2.3E-22 5E-27 137.7 9.1 103 91-194 27-147 (147)
56 TIGR01672 AphA HAD superfamily 99.9 3.6E-21 7.9E-26 140.0 14.3 147 11-197 65-216 (237)
57 TIGR01685 MDP-1 magnesium-depe 99.9 4.3E-22 9.4E-27 138.1 8.4 107 89-196 43-161 (174)
58 PRK09552 mtnX 2-hydroxy-3-keto 99.9 8.8E-22 1.9E-26 143.9 9.4 192 9-219 3-213 (219)
59 TIGR01261 hisB_Nterm histidino 99.9 2.3E-21 5E-26 133.8 10.4 102 90-194 28-149 (161)
60 PRK13582 thrH phosphoserine ph 99.9 3.1E-21 6.8E-26 139.9 11.2 189 9-219 1-196 (205)
61 TIGR01662 HAD-SF-IIIA HAD-supe 99.9 1.5E-20 3.3E-25 126.7 13.4 97 91-192 25-131 (132)
62 cd01427 HAD_like Haloacid deha 99.8 2.1E-20 4.5E-25 127.0 10.4 103 88-191 21-139 (139)
63 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 1.5E-19 3.3E-24 129.4 13.8 94 89-186 70-183 (188)
64 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 2.3E-20 5.1E-25 129.6 9.0 97 91-190 42-160 (166)
65 TIGR02137 HSK-PSP phosphoserin 99.8 3.7E-19 7.9E-24 127.6 14.5 181 10-219 2-196 (203)
66 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.8 6.9E-21 1.5E-25 141.9 5.0 125 93-218 122-254 (257)
67 TIGR01452 PGP_euk phosphoglyco 99.8 1.9E-20 4.2E-25 141.5 6.3 122 92-214 144-279 (279)
68 COG0560 SerB Phosphoserine pho 99.8 6.8E-19 1.5E-23 126.8 12.7 115 90-209 76-200 (212)
69 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.8 7.2E-18 1.6E-22 122.0 15.1 120 70-191 67-197 (202)
70 TIGR01668 YqeG_hyp_ppase HAD s 99.8 6.5E-18 1.4E-22 118.3 12.6 99 91-199 43-143 (170)
71 PF00702 Hydrolase: haloacid d 99.8 1.4E-18 3E-23 127.0 9.2 90 90-185 126-215 (215)
72 TIGR03333 salvage_mtnX 2-hydro 99.8 8.6E-18 1.9E-22 122.4 13.3 190 12-219 2-209 (214)
73 TIGR01488 HAD-SF-IB Haloacid D 99.8 8.6E-18 1.9E-22 119.1 12.5 96 88-184 70-177 (177)
74 TIGR01681 HAD-SF-IIIC HAD-supe 99.8 1.8E-18 3.9E-23 115.3 8.0 88 91-183 29-126 (128)
75 PRK05446 imidazole glycerol-ph 99.8 9.3E-18 2E-22 128.7 12.3 101 90-193 29-149 (354)
76 PRK10530 pyridoxal phosphate ( 99.7 7.4E-18 1.6E-22 127.5 9.5 118 93-213 139-260 (272)
77 PRK11009 aphA acid phosphatase 99.7 4.3E-17 9.3E-22 118.7 12.9 98 89-196 112-215 (237)
78 PRK10444 UMP phosphatase; Prov 99.7 3.7E-18 8E-23 126.2 7.2 73 142-214 168-245 (248)
79 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.7 2.1E-18 4.4E-23 128.2 5.4 79 136-214 166-249 (249)
80 PLN02645 phosphoglycolate phos 99.7 2.8E-18 6E-23 131.5 5.3 110 109-219 188-308 (311)
81 PRK11590 hypothetical protein; 99.7 6.5E-16 1.4E-20 112.2 15.9 178 8-193 5-203 (211)
82 KOG1615 Phosphoserine phosphat 99.7 8.1E-16 1.8E-20 104.9 11.3 193 7-216 14-223 (227)
83 PRK01158 phosphoglycolate phos 99.7 2.7E-17 5.9E-22 121.4 4.5 97 111-213 119-218 (230)
84 PF06888 Put_Phosphatase: Puta 99.7 4.1E-15 8.9E-20 107.7 15.3 169 11-193 2-197 (234)
85 COG4229 Predicted enolase-phos 99.7 1.3E-14 2.7E-19 98.0 14.3 121 89-212 101-224 (229)
86 TIGR01482 SPP-subfamily Sucros 99.7 1.4E-16 2.9E-21 117.3 5.3 100 110-213 110-210 (225)
87 COG0647 NagD Predicted sugar p 99.6 3.2E-15 6.9E-20 110.3 11.7 75 145-219 187-266 (269)
88 TIGR02726 phenyl_P_delta pheny 99.6 4.3E-16 9.3E-21 108.0 6.5 98 99-209 42-139 (169)
89 PHA02530 pseT polynucleotide k 99.6 2.9E-15 6.4E-20 114.9 9.9 104 90-194 186-298 (300)
90 COG0561 Cof Predicted hydrolas 99.6 4.6E-16 9.9E-21 117.2 5.2 69 142-213 182-250 (264)
91 PF13242 Hydrolase_like: HAD-h 99.6 1.8E-15 3.9E-20 91.2 5.3 69 146-214 2-75 (75)
92 smart00577 CPDc catalytic doma 99.6 2.6E-15 5.6E-20 102.8 6.6 95 89-188 43-138 (148)
93 PRK08238 hypothetical protein; 99.6 5.5E-14 1.2E-18 112.8 15.1 98 89-194 70-167 (479)
94 TIGR01686 FkbH FkbH-like domai 99.6 2.5E-15 5.5E-20 115.7 7.1 90 92-187 32-125 (320)
95 TIGR01670 YrbI-phosphatas 3-de 99.6 9.9E-16 2.2E-20 105.5 4.2 101 99-212 36-136 (154)
96 TIGR01487 SPP-like sucrose-pho 99.6 7.4E-16 1.6E-20 112.5 3.5 98 110-212 110-207 (215)
97 TIGR01545 YfhB_g-proteo haloac 99.6 2.3E-13 5E-18 98.4 15.7 102 89-193 92-202 (210)
98 PRK15126 thiamin pyrimidine py 99.6 9.8E-16 2.1E-20 115.9 3.4 66 142-210 181-248 (272)
99 PRK10513 sugar phosphate phosp 99.6 2.2E-15 4.8E-20 113.9 5.1 69 142-213 189-257 (270)
100 TIGR01456 CECR5 HAD-superfamil 99.6 6.4E-14 1.4E-18 107.9 13.1 75 145-219 230-321 (321)
101 TIGR01544 HAD-SF-IE haloacid d 99.6 3.8E-13 8.2E-18 99.7 16.0 95 89-184 119-230 (277)
102 TIGR02244 HAD-IG-Ncltidse HAD 99.6 7.6E-13 1.7E-17 101.1 18.0 104 89-193 182-324 (343)
103 TIGR01460 HAD-SF-IIA Haloacid 99.6 2.3E-14 5E-19 105.8 8.7 50 145-194 185-236 (236)
104 TIGR01663 PNK-3'Pase polynucle 99.5 3.6E-14 7.9E-19 114.3 8.8 92 92-186 198-305 (526)
105 PRK10976 putative hydrolase; P 99.5 5.8E-14 1.3E-18 105.9 9.4 68 142-212 183-252 (266)
106 PLN02887 hydrolase family prot 99.5 6.4E-15 1.4E-19 120.2 4.0 69 142-213 500-568 (580)
107 COG2179 Predicted hydrolase of 99.5 1.2E-13 2.6E-18 92.4 8.8 95 89-193 44-139 (175)
108 PRK00192 mannosyl-3-phosphogly 99.5 3.8E-13 8.3E-18 101.7 12.8 54 144-201 186-240 (273)
109 PF12689 Acid_PPase: Acid Phos 99.5 9.6E-14 2.1E-18 95.6 7.9 105 88-198 42-157 (169)
110 KOG3040 Predicted sugar phosph 99.5 9.4E-14 2E-18 96.0 7.5 211 7-220 5-258 (262)
111 PRK09484 3-deoxy-D-manno-octul 99.5 3.6E-14 7.9E-19 100.6 5.1 108 99-219 56-169 (183)
112 PTZ00445 p36-lilke protein; Pr 99.5 5.6E-13 1.2E-17 93.4 10.7 136 57-193 32-206 (219)
113 KOG2882 p-Nitrophenyl phosphat 99.5 3.5E-13 7.5E-18 98.8 9.3 76 144-219 220-304 (306)
114 PRK03669 mannosyl-3-phosphogly 99.4 2.7E-13 5.8E-18 102.4 6.3 46 142-187 180-228 (271)
115 TIGR02471 sucr_syn_bact_C sucr 99.4 1.2E-12 2.6E-17 97.0 8.6 61 142-205 152-212 (236)
116 COG0241 HisB Histidinol phosph 99.4 3.6E-12 7.8E-17 88.2 10.0 123 90-215 30-173 (181)
117 PF12710 HAD: haloacid dehalog 99.4 2.7E-12 5.9E-17 92.1 10.0 87 94-182 92-192 (192)
118 TIGR00099 Cof-subfamily Cof su 99.4 4.4E-13 9.4E-18 100.6 5.1 68 143-213 182-249 (256)
119 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.4 6.9E-13 1.5E-17 98.5 5.0 99 93-193 140-242 (242)
120 KOG3120 Predicted haloacid deh 99.4 1.7E-11 3.7E-16 85.7 11.1 172 8-193 12-210 (256)
121 TIGR02463 MPGP_rel mannosyl-3- 99.3 2.1E-12 4.5E-17 94.8 6.0 46 144-189 174-219 (221)
122 PF08282 Hydrolase_3: haloacid 99.3 2.1E-13 4.6E-18 102.0 0.5 67 144-213 181-247 (254)
123 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.3 9.6E-12 2.1E-16 92.4 8.8 90 91-186 24-116 (242)
124 TIGR01533 lipo_e_P4 5'-nucleot 99.3 1.7E-10 3.7E-15 85.7 13.8 85 89-181 116-204 (266)
125 PF08645 PNK3P: Polynucleotide 99.3 3.4E-11 7.5E-16 83.0 8.9 94 92-188 30-152 (159)
126 TIGR01486 HAD-SF-IIB-MPGP mann 99.3 4.8E-12 1E-16 94.9 4.3 66 142-210 169-242 (256)
127 TIGR01485 SPP_plant-cyano sucr 99.3 1.8E-10 4E-15 86.0 12.5 52 142-193 160-211 (249)
128 TIGR01512 ATPase-IB2_Cd heavy 99.2 1.1E-11 2.4E-16 102.0 5.6 115 89-218 360-478 (536)
129 PF09419 PGP_phosphatase: Mito 99.2 1.7E-10 3.7E-15 79.3 10.2 92 92-194 60-166 (168)
130 TIGR01525 ATPase-IB_hvy heavy 99.2 1.4E-11 3.1E-16 101.9 5.7 113 90-217 383-498 (556)
131 COG4359 Uncharacterized conser 99.2 6.8E-10 1.5E-14 75.6 12.4 161 11-193 5-184 (220)
132 PF06941 NT5C: 5' nucleotidase 99.2 5.7E-11 1.2E-15 85.0 7.5 173 10-219 2-186 (191)
133 TIGR01684 viral_ppase viral ph 99.2 1.7E-10 3.6E-15 85.5 8.3 59 93-152 148-206 (301)
134 TIGR02461 osmo_MPG_phos mannos 99.1 1.2E-10 2.7E-15 85.2 5.7 44 146-189 178-223 (225)
135 PLN02382 probable sucrose-phos 99.1 9E-10 2E-14 87.5 10.7 61 142-204 168-231 (413)
136 TIGR02251 HIF-SF_euk Dullard-l 99.1 5.3E-11 1.2E-15 82.6 3.3 100 89-193 40-140 (162)
137 TIGR01511 ATPase-IB1_Cu copper 99.1 1.2E-10 2.6E-15 96.4 5.7 112 90-217 404-517 (562)
138 TIGR01522 ATPase-IIA2_Ca golgi 99.1 2.2E-10 4.7E-15 99.5 6.2 124 91-218 528-670 (884)
139 COG4087 Soluble P-type ATPase 99.1 1.7E-09 3.6E-14 69.5 8.0 121 90-221 29-149 (152)
140 COG1778 Low specificity phosph 99.0 3.3E-10 7.2E-15 75.1 4.9 98 99-209 43-140 (170)
141 TIGR01484 HAD-SF-IIB HAD-super 99.0 2.3E-09 5E-14 77.7 6.9 47 143-189 157-203 (204)
142 PF05116 S6PP: Sucrose-6F-phos 99.0 1E-08 2.3E-13 76.2 10.4 50 143-193 159-208 (247)
143 PRK10671 copA copper exporting 99.0 1.9E-09 4.2E-14 93.4 7.4 113 91-218 650-764 (834)
144 KOG2630 Enolase-phosphatase E- 98.9 6E-08 1.3E-12 68.7 12.8 122 90-214 122-248 (254)
145 PHA03398 viral phosphatase sup 98.9 1E-08 2.2E-13 76.3 9.3 85 93-178 150-266 (303)
146 PF05761 5_nucleotid: 5' nucle 98.9 7.3E-08 1.6E-12 76.9 14.6 103 90-193 182-325 (448)
147 PTZ00174 phosphomannomutase; P 98.9 5.6E-10 1.2E-14 83.2 2.1 48 142-193 181-232 (247)
148 PRK14502 bifunctional mannosyl 98.8 1E-08 2.2E-13 84.5 7.8 45 146-190 610-656 (694)
149 COG4996 Predicted phosphatase 98.8 1.4E-08 3.1E-13 65.2 5.9 90 89-183 39-134 (164)
150 PRK10187 trehalose-6-phosphate 98.8 6.8E-09 1.5E-13 78.0 5.2 69 144-219 169-241 (266)
151 TIGR01675 plant-AP plant acid 98.8 4.3E-07 9.4E-12 65.9 13.1 101 89-193 118-223 (229)
152 PRK11033 zntA zinc/cadmium/mer 98.8 1.7E-08 3.6E-13 86.2 6.7 110 91-217 568-679 (741)
153 TIGR01116 ATPase-IIA1_Ca sarco 98.7 1.4E-08 3.1E-13 88.7 5.8 124 91-218 537-682 (917)
154 smart00775 LNS2 LNS2 domain. T 98.7 2.3E-07 5E-12 64.0 9.7 92 93-187 29-141 (157)
155 COG3700 AphA Acid phosphatase 98.6 1.5E-07 3.3E-12 64.0 6.9 96 91-193 114-212 (237)
156 PRK12702 mannosyl-3-phosphogly 98.6 3.1E-07 6.8E-12 68.6 8.7 46 147-193 206-253 (302)
157 PLN02177 glycerol-3-phosphate 98.6 2.5E-06 5.3E-11 69.4 14.5 96 92-193 111-215 (497)
158 PF03767 Acid_phosphat_B: HAD 98.6 1.9E-07 4.2E-12 68.4 7.4 89 91-184 115-211 (229)
159 TIGR01497 kdpB K+-transporting 98.6 1.2E-07 2.5E-12 79.4 6.7 102 91-207 446-547 (675)
160 PLN02423 phosphomannomutase 98.6 2.6E-08 5.6E-13 74.0 2.4 47 142-193 182-232 (245)
161 PF11019 DUF2608: Protein of u 98.6 2.7E-06 5.8E-11 63.3 12.4 106 88-193 78-210 (252)
162 PRK01122 potassium-transportin 98.6 1.9E-07 4.1E-12 78.3 7.1 103 91-208 445-547 (679)
163 PRK14010 potassium-transportin 98.6 2.3E-07 4.9E-12 77.8 7.5 103 91-208 441-543 (673)
164 COG5663 Uncharacterized conser 98.6 7.6E-07 1.7E-11 60.0 8.4 96 88-197 69-166 (194)
165 PRK14501 putative bifunctional 98.5 1.2E-07 2.5E-12 81.3 5.7 69 145-219 653-721 (726)
166 TIGR01680 Veg_Stor_Prot vegeta 98.5 5.4E-06 1.2E-10 61.3 12.1 103 89-193 143-250 (275)
167 TIGR01517 ATPase-IIB_Ca plasma 98.5 1.6E-07 3.6E-12 82.5 5.0 122 91-216 579-719 (941)
168 COG2217 ZntA Cation transport 98.5 5.1E-07 1.1E-11 76.0 7.1 111 91-216 537-649 (713)
169 KOG0207 Cation transport ATPas 98.4 2.6E-06 5.6E-11 71.9 10.0 85 91-187 723-807 (951)
170 TIGR01523 ATPase-IID_K-Na pota 98.4 8.2E-07 1.8E-11 78.6 7.2 122 91-216 646-796 (1053)
171 TIGR01524 ATPase-IIIB_Mg magne 98.4 7.4E-07 1.6E-11 77.7 6.7 112 91-208 515-642 (867)
172 TIGR01647 ATPase-IIIA_H plasma 98.4 5.2E-07 1.1E-11 77.5 5.7 110 91-207 442-573 (755)
173 PRK10517 magnesium-transportin 98.4 6.1E-07 1.3E-11 78.3 6.1 112 91-208 550-677 (902)
174 PRK15122 magnesium-transportin 98.4 7.9E-07 1.7E-11 77.7 6.6 120 91-216 550-687 (903)
175 PF03031 NIF: NLI interacting 98.4 1.6E-07 3.5E-12 65.2 1.6 92 89-185 34-126 (159)
176 KOG2470 Similar to IMP-GMP spe 98.3 3.5E-05 7.6E-10 58.4 12.8 101 92-193 241-376 (510)
177 TIGR01106 ATPase-IIC_X-K sodiu 98.3 1.8E-06 4E-11 76.4 6.9 122 91-216 568-734 (997)
178 PLN02645 phosphoglycolate phos 98.2 1.4E-05 2.9E-10 61.8 9.9 90 91-190 44-136 (311)
179 COG0474 MgtA Cation transport 98.2 3.7E-06 8.1E-11 73.7 6.8 101 90-194 546-664 (917)
180 KOG0202 Ca2+ transporting ATPa 98.1 9.3E-06 2E-10 68.1 7.2 114 91-208 584-718 (972)
181 COG2503 Predicted secreted aci 98.1 3.7E-05 8E-10 55.4 8.7 86 89-182 120-210 (274)
182 TIGR00685 T6PP trehalose-phosp 98.1 1.8E-06 4E-11 64.3 1.9 69 147-219 165-240 (244)
183 TIGR02250 FCP1_euk FCP1-like p 98.1 1.8E-05 3.8E-10 54.5 6.4 87 88-181 55-143 (156)
184 TIGR01652 ATPase-Plipid phosph 98.0 9.1E-06 2E-10 72.6 6.1 125 91-218 631-819 (1057)
185 PF13344 Hydrolase_6: Haloacid 98.0 4E-05 8.7E-10 48.7 7.4 87 88-186 11-100 (101)
186 TIGR01657 P-ATPase-V P-type AT 97.9 4.5E-05 9.7E-10 68.3 8.6 41 91-132 656-696 (1054)
187 COG5610 Predicted hydrolase (H 97.9 6E-05 1.3E-09 59.2 7.2 99 92-191 100-201 (635)
188 PF05152 DUF705: Protein of un 97.7 0.00017 3.7E-09 53.5 7.1 86 92-178 143-260 (297)
189 TIGR01494 ATPase_P-type ATPase 97.7 0.00021 4.5E-09 59.1 8.3 82 91-187 347-428 (499)
190 PLN03190 aminophospholipid tra 97.7 5.5E-05 1.2E-09 68.0 4.4 52 166-219 872-923 (1178)
191 TIGR02245 HAD_IIID1 HAD-superf 97.6 0.00023 5.1E-09 50.6 6.7 90 91-186 45-150 (195)
192 PF08235 LNS2: LNS2 (Lipin/Ned 97.5 0.00074 1.6E-08 46.1 7.6 93 92-187 28-141 (157)
193 COG0647 NagD Predicted sugar p 97.5 0.0014 3E-08 49.2 9.0 55 88-142 21-78 (269)
194 TIGR01452 PGP_euk phosphoglyco 97.4 0.0017 3.8E-08 49.4 9.3 88 91-189 18-108 (279)
195 PF05822 UMPH-1: Pyrimidine 5' 97.3 0.0036 7.8E-08 46.1 9.0 94 89-184 88-198 (246)
196 COG2216 KdpB High-affinity K+ 97.2 0.00095 2.1E-08 53.7 6.1 87 92-193 448-534 (681)
197 KOG2961 Predicted hydrolase (H 97.2 0.0078 1.7E-07 40.5 9.1 104 90-199 60-174 (190)
198 PLN02499 glycerol-3-phosphate 97.1 0.024 5.1E-07 46.1 13.0 83 99-185 101-192 (498)
199 KOG1618 Predicted phosphatase 97.1 0.0045 9.8E-08 46.8 7.9 49 146-194 269-342 (389)
200 COG3769 Predicted hydrolase (H 97.1 0.01 2.3E-07 42.6 9.2 27 165-192 208-235 (274)
201 COG4030 Uncharacterized protei 97.0 0.04 8.6E-07 39.9 12.0 41 89-131 81-121 (315)
202 KOG2469 IMP-GMP specific 5'-nu 97.0 0.018 3.9E-07 45.2 10.8 101 94-194 201-335 (424)
203 PF13344 Hydrolase_6: Haloacid 97.0 0.0011 2.5E-08 42.1 3.7 58 12-72 1-60 (101)
204 KOG0206 P-type ATPase [General 96.8 0.026 5.7E-07 50.6 11.7 52 71-122 624-682 (1151)
205 KOG0204 Calcium transporting A 96.8 0.0041 8.8E-08 53.1 6.3 110 91-207 647-778 (1034)
206 KOG3128 Uncharacterized conser 96.6 0.031 6.7E-07 41.0 9.0 94 90-184 137-247 (298)
207 TIGR01658 EYA-cons_domain eyes 96.5 0.024 5.2E-07 41.4 7.7 81 108-193 176-258 (274)
208 COG4502 5'(3')-deoxyribonucleo 96.4 0.012 2.5E-07 39.0 5.4 90 87-199 64-158 (180)
209 TIGR01457 HAD-SF-IIA-hyp2 HAD- 96.3 0.051 1.1E-06 40.7 9.1 102 91-193 17-144 (249)
210 PLN02205 alpha,alpha-trehalose 96.1 0.0033 7.2E-08 55.1 2.3 77 144-226 757-849 (854)
211 COG1877 OtsB Trehalose-6-phosp 96.1 0.076 1.7E-06 39.9 8.9 68 147-214 180-251 (266)
212 TIGR01689 EcbF-BcbF capsule bi 96.0 0.0044 9.5E-08 40.9 1.7 31 91-121 24-54 (126)
213 PLN02580 trehalose-phosphatase 95.9 0.0076 1.6E-07 47.7 3.2 69 147-220 299-375 (384)
214 PF06189 5-nucleotidase: 5'-nu 95.9 0.17 3.6E-06 37.6 9.7 76 107-195 186-261 (264)
215 PRK10444 UMP phosphatase; Prov 95.8 0.11 2.4E-06 38.9 8.9 102 91-193 17-143 (248)
216 TIGR01460 HAD-SF-IIA Haloacid 95.7 0.12 2.7E-06 38.3 8.8 53 89-141 12-67 (236)
217 PLN02580 trehalose-phosphatase 95.7 0.024 5.3E-07 44.9 5.1 34 91-125 141-174 (384)
218 COG3882 FkbH Predicted enzyme 95.3 0.091 2E-06 42.5 7.1 92 95-193 259-354 (574)
219 KOG0210 P-type ATPase [Inorgan 95.3 0.037 8E-07 46.7 4.9 121 92-219 712-833 (1051)
220 PRK09484 3-deoxy-D-manno-octul 95.2 0.0091 2E-07 42.5 1.3 16 8-23 20-35 (183)
221 TIGR01670 YrbI-phosphatas 3-de 95.2 0.0093 2E-07 41.1 1.2 14 9-22 1-14 (154)
222 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.1 0.038 8.2E-07 41.6 4.4 49 92-141 22-73 (257)
223 COG1778 Low specificity phosph 94.9 0.014 2.9E-07 39.6 1.4 18 6-23 5-22 (170)
224 TIGR02468 sucrsPsyn_pln sucros 94.9 0.74 1.6E-05 41.6 12.1 72 119-193 924-1002(1050)
225 PLN02205 alpha,alpha-trehalose 94.9 0.057 1.2E-06 47.6 5.4 34 92-125 617-651 (854)
226 KOG0209 P-type ATPase [Inorgan 94.5 0.15 3.3E-06 44.1 6.7 103 90-194 674-835 (1160)
227 TIGR01456 CECR5 HAD-superfamil 94.4 0.25 5.3E-06 38.6 7.3 90 88-190 13-109 (321)
228 TIGR02726 phenyl_P_delta pheny 94.3 0.024 5.1E-07 39.7 1.5 17 7-23 5-21 (169)
229 KOG0203 Na+/K+ ATPase, alpha s 93.7 0.04 8.6E-07 47.4 1.9 104 91-200 590-737 (1019)
230 KOG3040 Predicted sugar phosph 92.0 1.5 3.3E-05 31.6 7.4 87 91-189 23-113 (262)
231 KOG4549 Magnesium-dependent ph 91.9 1.5 3.2E-05 28.9 6.6 87 89-177 42-134 (144)
232 KOG2116 Protein involved in pl 91.7 1.4 3.1E-05 37.2 8.1 20 168-187 653-672 (738)
233 PRK00192 mannosyl-3-phosphogly 91.7 0.42 9.2E-06 36.3 5.0 41 94-135 24-64 (273)
234 PLN03017 trehalose-phosphatase 91.6 0.1 2.2E-06 41.1 1.5 71 147-221 281-358 (366)
235 PRK10513 sugar phosphate phosp 91.1 0.58 1.3E-05 35.4 5.2 39 94-133 23-61 (270)
236 KOG2882 p-Nitrophenyl phosphat 91.0 2 4.3E-05 32.9 7.6 44 89-132 36-81 (306)
237 PLN03064 alpha,alpha-trehalose 91.0 0.49 1.1E-05 42.3 5.2 35 91-125 622-657 (934)
238 TIGR02461 osmo_MPG_phos mannos 90.8 0.61 1.3E-05 34.4 4.9 39 94-133 18-56 (225)
239 PF02358 Trehalose_PPase: Treh 90.3 0.48 1E-05 35.2 4.0 65 146-211 162-234 (235)
240 PLN03063 alpha,alpha-trehalose 90.1 0.54 1.2E-05 41.5 4.7 35 91-125 532-567 (797)
241 PLN03017 trehalose-phosphatase 90.1 0.13 2.8E-06 40.6 0.9 30 9-38 111-145 (366)
242 TIGR00685 T6PP trehalose-phosp 90.1 0.16 3.6E-06 37.9 1.4 15 9-23 3-17 (244)
243 TIGR01487 SPP-like sucrose-pho 90.1 0.59 1.3E-05 34.1 4.3 41 92-133 19-59 (215)
244 TIGR02463 MPGP_rel mannosyl-3- 89.9 0.71 1.5E-05 33.8 4.7 36 96-132 21-56 (221)
245 PLN02151 trehalose-phosphatase 89.8 0.18 3.9E-06 39.6 1.5 71 147-221 267-344 (354)
246 PRK01158 phosphoglycolate phos 89.7 0.76 1.6E-05 33.8 4.7 41 92-133 21-61 (230)
247 TIGR01689 EcbF-BcbF capsule bi 89.5 1.3 2.7E-05 29.4 5.0 14 10-23 2-15 (126)
248 KOG3107 Predicted haloacid deh 89.4 3.1 6.6E-05 32.9 7.6 81 107-193 370-452 (468)
249 PRK11840 bifunctional sulfur c 89.2 9.2 0.0002 29.9 11.0 100 90-199 177-285 (326)
250 COG2179 Predicted hydrolase of 89.0 0.57 1.2E-05 32.4 3.2 17 7-23 26-42 (175)
251 TIGR00099 Cof-subfamily Cof su 88.9 0.95 2.1E-05 34.0 4.8 39 93-132 18-56 (256)
252 PRK15126 thiamin pyrimidine py 88.4 0.89 1.9E-05 34.5 4.4 41 93-134 21-61 (272)
253 PTZ00445 p36-lilke protein; Pr 88.3 0.41 8.9E-06 34.6 2.3 16 7-22 41-56 (219)
254 PLN02151 trehalose-phosphatase 88.3 0.33 7.1E-06 38.2 2.0 30 9-38 98-132 (354)
255 PRK00994 F420-dependent methyl 88.3 8.6 0.00019 28.4 9.3 82 106-193 30-117 (277)
256 PF05690 ThiG: Thiazole biosyn 88.2 5 0.00011 29.6 7.7 97 90-194 103-206 (247)
257 CHL00162 thiG thiamin biosynth 88.1 9.1 0.0002 28.7 9.0 99 90-197 117-223 (267)
258 PRK10976 putative hydrolase; P 88.1 1 2.2E-05 34.0 4.5 39 94-133 22-60 (266)
259 TIGR01486 HAD-SF-IIB-MPGP mann 87.9 1.3 2.8E-05 33.3 4.9 37 95-132 20-56 (256)
260 TIGR01482 SPP-subfamily Sucros 87.9 1.1 2.3E-05 32.9 4.4 39 93-132 17-55 (225)
261 COG0561 Cof Predicted hydrolas 87.7 1.2 2.6E-05 33.6 4.7 41 92-133 21-61 (264)
262 PRK10530 pyridoxal phosphate ( 87.4 1.3 2.7E-05 33.6 4.7 40 93-133 22-61 (272)
263 PRK12702 mannosyl-3-phosphogly 86.7 1.6 3.6E-05 33.4 4.8 39 94-133 21-59 (302)
264 COG4850 Uncharacterized conser 86.3 14 0.0003 28.8 9.6 86 89-181 194-294 (373)
265 PF08282 Hydrolase_3: haloacid 86.1 1.4 2.9E-05 32.6 4.2 40 92-132 16-55 (254)
266 cd04728 ThiG Thiazole synthase 85.4 13 0.00029 27.7 9.7 99 90-197 103-209 (248)
267 COG0731 Fe-S oxidoreductases [ 84.7 2.2 4.8E-05 32.7 4.6 37 89-125 90-127 (296)
268 PRK03669 mannosyl-3-phosphogly 84.4 2 4.3E-05 32.6 4.4 38 94-132 27-64 (271)
269 smart00577 CPDc catalytic doma 84.1 0.67 1.5E-05 31.6 1.6 15 10-24 3-17 (148)
270 KOG3189 Phosphomannomutase [Li 83.4 0.78 1.7E-05 32.7 1.7 49 130-181 174-226 (252)
271 KOG0208 Cation transport ATPas 83.0 1.6 3.5E-05 38.9 3.6 41 91-132 705-745 (1140)
272 KOG0323 TFIIF-interacting CTD 82.7 3.2 7E-05 35.4 5.2 55 89-145 199-255 (635)
273 PF06014 DUF910: Bacterial pro 82.6 0.99 2.1E-05 25.5 1.6 26 153-182 6-31 (62)
274 TIGR02251 HIF-SF_euk Dullard-l 81.9 0.87 1.9E-05 31.7 1.5 14 10-23 2-15 (162)
275 TIGR00190 thiC thiamine biosyn 81.6 8.4 0.00018 30.9 6.8 56 70-125 137-193 (423)
276 PRK00208 thiG thiazole synthas 81.5 20 0.00043 26.9 9.5 98 91-197 104-209 (250)
277 PRK13352 thiamine biosynthesis 81.5 8.5 0.00018 31.0 6.8 56 70-125 140-196 (431)
278 PF02358 Trehalose_PPase: Treh 81.4 1 2.2E-05 33.4 1.8 11 13-23 1-11 (235)
279 KOG2134 Polynucleotide kinase 80.4 7.1 0.00015 31.1 6.0 94 91-187 104-228 (422)
280 PF04413 Glycos_transf_N: 3-De 79.9 5 0.00011 28.6 4.8 95 71-178 82-184 (186)
281 TIGR01484 HAD-SF-IIB HAD-super 78.5 3.5 7.6E-05 29.6 3.8 36 92-128 18-53 (204)
282 cd00733 GlyRS_alpha_core Class 78.4 4.3 9.3E-05 30.2 4.0 43 151-193 88-133 (279)
283 TIGR02250 FCP1_euk FCP1-like p 78.2 1.6 3.5E-05 30.1 1.9 17 8-24 5-21 (156)
284 COG5083 SMP2 Uncharacterized p 77.5 1.6 3.5E-05 35.2 1.8 17 8-24 374-390 (580)
285 PRK09348 glyQ glycyl-tRNA synt 77.4 4.8 0.0001 30.0 4.0 42 151-193 92-136 (283)
286 COG2022 ThiG Uncharacterized e 76.7 28 0.00061 25.8 8.9 98 90-196 110-215 (262)
287 TIGR00388 glyQ glycyl-tRNA syn 76.2 5.4 0.00012 29.9 4.1 42 151-193 89-133 (293)
288 PF03332 PMM: Eukaryotic phosp 76.0 4.5 9.9E-05 29.5 3.6 43 96-140 1-43 (220)
289 PF14336 DUF4392: Domain of un 75.2 17 0.00038 28.0 6.8 28 94-121 63-90 (291)
290 KOG1618 Predicted phosphatase 74.6 23 0.00051 27.7 7.1 90 88-190 48-144 (389)
291 PRK10187 trehalose-6-phosphate 74.6 6.3 0.00014 29.9 4.3 39 91-130 36-75 (266)
292 TIGR01485 SPP_plant-cyano sucr 74.2 6.9 0.00015 29.3 4.4 38 94-132 24-61 (249)
293 PF01993 MTD: methylene-5,6,7, 74.0 17 0.00037 27.0 6.0 81 107-193 30-116 (276)
294 COG0422 ThiC Thiamine biosynth 73.9 42 0.00091 26.9 8.5 58 68-125 136-194 (432)
295 COG0241 HisB Histidinol phosph 73.6 2.3 5.1E-05 30.1 1.7 15 9-23 5-19 (181)
296 KOG2134 Polynucleotide kinase 73.4 2 4.4E-05 34.0 1.4 17 8-24 74-90 (422)
297 TIGR02329 propionate_PrpR prop 72.1 28 0.00061 29.5 7.8 88 95-194 85-172 (526)
298 PF06506 PrpR_N: Propionate ca 72.0 6.4 0.00014 27.7 3.6 84 96-194 66-152 (176)
299 COG4483 Uncharacterized protei 71.6 5 0.00011 22.8 2.3 26 153-182 6-31 (68)
300 PTZ00174 phosphomannomutase; P 71.0 8.2 0.00018 28.9 4.2 34 92-125 23-56 (247)
301 PF03332 PMM: Eukaryotic phosp 69.7 1.8 4E-05 31.5 0.5 49 142-193 155-207 (220)
302 PHA02530 pseT polynucleotide k 68.8 28 0.00061 26.8 6.9 15 9-23 158-172 (300)
303 KOG0205 Plasma membrane H+-tra 68.5 13 0.00028 32.1 5.0 96 91-187 492-606 (942)
304 PRK13762 tRNA-modifying enzyme 67.9 11 0.00023 29.7 4.3 31 89-119 140-170 (322)
305 COG3882 FkbH Predicted enzyme 67.5 3.5 7.6E-05 33.9 1.6 16 8-23 221-236 (574)
306 PRK15424 propionate catabolism 67.2 37 0.00081 28.9 7.6 88 95-194 95-182 (538)
307 PF13580 SIS_2: SIS domain; PD 67.2 35 0.00076 22.9 8.3 99 94-192 22-137 (138)
308 PLN02887 hydrolase family prot 66.8 10 0.00022 32.4 4.3 41 91-132 325-365 (580)
309 PF06437 ISN1: IMP-specific 5' 66.5 8.9 0.00019 30.6 3.6 40 152-193 352-400 (408)
310 smart00540 LEM in nuclear memb 65.1 8.9 0.00019 20.1 2.3 29 97-125 9-37 (44)
311 COG0752 GlyQ Glycyl-tRNA synth 64.9 12 0.00026 27.8 3.7 41 152-193 94-137 (298)
312 PRK14502 bifunctional mannosyl 63.9 15 0.00032 32.1 4.6 40 93-133 435-474 (694)
313 PF02091 tRNA-synt_2e: Glycyl- 63.4 6.4 0.00014 29.5 2.2 42 151-193 87-131 (284)
314 PF04413 Glycos_transf_N: 3-De 62.9 53 0.0012 23.4 7.8 87 96-194 37-127 (186)
315 TIGR00236 wecB UDP-N-acetylglu 62.7 55 0.0012 26.0 7.7 96 96-194 16-119 (365)
316 PF10113 Fibrillarin_2: Fibril 62.2 23 0.00049 28.7 5.0 44 151-194 208-255 (505)
317 KOG1605 TFIIF-interacting CTD 60.3 5.5 0.00012 30.1 1.5 95 90-189 130-225 (262)
318 TIGR02471 sucr_syn_bact_C sucr 59.8 24 0.00051 26.1 4.8 32 99-132 23-54 (236)
319 TIGR01858 tag_bisphos_ald clas 59.4 81 0.0017 24.4 7.9 95 96-195 4-105 (282)
320 cd01766 Ufm1 Urm1-like ubiquit 58.2 29 0.00063 20.4 3.8 39 147-185 25-63 (82)
321 COG1834 N-Dimethylarginine dim 57.6 33 0.00071 26.1 5.0 86 97-183 41-146 (267)
322 cd06537 CIDE_N_B CIDE_N domain 57.1 12 0.00026 22.6 2.2 18 10-27 40-57 (81)
323 KOG2832 TFIIF-interacting CTD 56.1 62 0.0013 25.9 6.4 82 91-177 214-295 (393)
324 PF14213 DUF4325: Domain of un 55.8 31 0.00067 20.2 3.9 30 10-39 18-47 (74)
325 smart00266 CAD Domains present 55.6 13 0.00028 22.0 2.1 19 9-27 38-56 (74)
326 cd06539 CIDE_N_A CIDE_N domain 55.5 13 0.00028 22.2 2.2 19 9-27 40-58 (78)
327 KOG2670 Enolase [Carbohydrate 54.9 62 0.0013 25.4 6.1 58 135-193 313-373 (433)
328 TIGR02826 RNR_activ_nrdG3 anae 54.5 28 0.00061 23.8 4.0 29 92-120 73-101 (147)
329 PF09269 DUF1967: Domain of un 52.3 16 0.00036 21.2 2.3 22 153-174 44-65 (69)
330 TIGR02495 NrdG2 anaerobic ribo 51.4 41 0.00088 23.9 4.7 31 90-120 73-103 (191)
331 PF02593 dTMP_synthase: Thymid 51.0 70 0.0015 23.6 5.8 92 91-187 59-156 (217)
332 PF03671 Ufm1: Ubiquitin fold 51.0 12 0.00025 21.9 1.4 39 147-185 25-63 (76)
333 cd01615 CIDE_N CIDE_N domain, 50.7 17 0.00037 21.8 2.1 18 10-27 41-58 (78)
334 KOG1605 TFIIF-interacting CTD 49.9 2.7 5.8E-05 31.7 -1.6 17 8-24 88-104 (262)
335 PF02350 Epimerase_2: UDP-N-ac 49.8 37 0.00081 27.0 4.6 88 103-194 3-100 (346)
336 cd06536 CIDE_N_ICAD CIDE_N dom 49.6 18 0.00039 21.8 2.2 18 10-27 43-60 (80)
337 COG0761 lytB 4-Hydroxy-3-methy 49.1 1.2E+02 0.0027 23.4 7.1 47 148-198 224-270 (294)
338 COG3769 Predicted hydrolase (H 48.3 38 0.00082 25.1 4.0 35 97-132 29-63 (274)
339 TIGR03365 Bsubt_queE 7-cyano-7 48.3 20 0.00043 26.8 2.8 30 91-120 84-113 (238)
340 TIGR03595 Obg_CgtA_exten Obg f 47.8 29 0.00062 20.2 2.8 22 153-174 44-65 (69)
341 PRK03692 putative UDP-N-acetyl 47.3 1.2E+02 0.0026 22.8 6.7 71 97-175 95-167 (243)
342 cd05008 SIS_GlmS_GlmD_1 SIS (S 46.6 29 0.00063 22.5 3.1 31 92-122 58-88 (126)
343 cd06538 CIDE_N_FSP27 CIDE_N do 46.4 22 0.00047 21.4 2.2 18 10-27 40-57 (79)
344 cd00947 TBP_aldolase_IIB Tagat 46.3 1.4E+02 0.0029 23.1 6.9 94 97-194 2-101 (276)
345 cd01445 TST_Repeats Thiosulfat 46.3 72 0.0015 21.4 5.0 48 146-193 75-130 (138)
346 COG0191 Fba Fructose/tagatose 45.5 1.4E+02 0.0031 23.1 7.2 98 95-196 5-109 (286)
347 COG2099 CobK Precorrin-6x redu 45.1 1.4E+02 0.0029 22.7 7.0 97 92-194 113-231 (257)
348 PRK14908 glycyl-tRNA synthetas 44.9 36 0.00077 31.3 4.1 42 151-193 93-137 (1000)
349 cd01480 vWA_collagen_alpha_1-V 44.1 36 0.00078 24.1 3.5 71 149-219 89-180 (186)
350 TIGR00262 trpA tryptophan synt 43.7 1.4E+02 0.0031 22.6 8.4 94 92-193 125-228 (256)
351 PRK12738 kbaY tagatose-bisphos 43.5 1.5E+02 0.0033 22.9 7.9 97 95-195 5-107 (286)
352 COG1208 GCD1 Nucleoside-diphos 43.3 1.7E+02 0.0037 23.4 8.3 80 94-178 33-113 (358)
353 PF01964 ThiC: ThiC family; I 43.2 14 0.00031 29.7 1.4 56 70-125 136-192 (420)
354 COG0381 WecB UDP-N-acetylgluco 43.2 99 0.0022 25.0 5.9 85 97-184 20-112 (383)
355 PF05240 APOBEC_C: APOBEC-like 42.7 21 0.00046 19.7 1.6 31 94-124 2-32 (55)
356 PLN02444 HMP-P synthase 42.0 1.2E+02 0.0026 25.9 6.3 54 70-125 297-351 (642)
357 COG1877 OtsB Trehalose-6-phosp 41.8 56 0.0012 25.0 4.3 36 90-125 39-75 (266)
358 cd05014 SIS_Kpsf KpsF-like pro 41.7 31 0.00066 22.5 2.7 31 92-122 59-89 (128)
359 PF03603 DNA_III_psi: DNA poly 41.7 61 0.0013 21.6 4.0 85 101-193 7-91 (128)
360 PRK12737 gatY tagatose-bisphos 41.4 1.7E+02 0.0036 22.7 7.7 96 95-195 5-107 (284)
361 PF06901 FrpC: RTX iron-regula 41.1 16 0.00034 26.1 1.2 14 10-23 59-72 (271)
362 PRK07709 fructose-bisphosphate 40.8 1.7E+02 0.0037 22.7 8.5 98 95-195 5-110 (285)
363 PLN02591 tryptophan synthase 40.4 1.6E+02 0.0035 22.3 8.3 98 92-193 116-219 (250)
364 TIGR00167 cbbA ketose-bisphosp 40.3 1.8E+02 0.0038 22.7 7.9 99 94-195 4-110 (288)
365 COG1911 RPL30 Ribosomal protei 40.1 91 0.002 19.6 4.2 38 91-129 19-56 (100)
366 PF13700 DUF4158: Domain of un 40.1 97 0.0021 21.5 5.1 79 29-107 70-149 (166)
367 PF03020 LEM: LEM domain; Int 40.1 5.7 0.00012 20.7 -0.8 28 98-125 10-37 (43)
368 PRK10076 pyruvate formate lyas 39.5 75 0.0016 23.3 4.5 29 91-119 50-79 (213)
369 TIGR00221 nagA N-acetylglucosa 39.4 2.1E+02 0.0045 23.3 8.8 82 91-176 174-279 (380)
370 cd05710 SIS_1 A subgroup of th 39.3 42 0.00092 21.8 3.0 30 92-121 59-88 (120)
371 PRK09195 gatY tagatose-bisphos 39.0 1.8E+02 0.004 22.5 7.3 97 95-195 5-107 (284)
372 PRK14021 bifunctional shikimat 38.6 2.6E+02 0.0055 24.1 9.4 35 159-193 263-303 (542)
373 COG0378 HypB Ni2+-binding GTPa 38.6 90 0.002 22.7 4.6 63 150-216 26-92 (202)
374 PRK08304 stage V sporulation p 38.5 1.2E+02 0.0025 24.2 5.5 67 127-193 30-109 (337)
375 smart00455 RBD Raf-like Ras-bi 37.4 41 0.00088 19.6 2.4 28 144-171 16-43 (70)
376 PLN02334 ribulose-phosphate 3- 37.3 1.7E+02 0.0037 21.6 9.6 98 94-194 102-204 (229)
377 PF07453 NUMOD1: NUMOD1 domain 37.3 36 0.00077 16.7 1.9 27 10-40 2-28 (37)
378 PF08620 RPAP1_C: RPAP1-like, 37.3 13 0.00029 21.9 0.3 9 13-21 4-12 (73)
379 PRK01395 V-type ATP synthase s 37.1 63 0.0014 20.6 3.4 27 166-193 4-30 (104)
380 PRK07998 gatY putative fructos 37.0 1.9E+02 0.0042 22.4 6.5 31 95-125 5-35 (283)
381 TIGR03278 methan_mark_10 putat 36.7 2.4E+02 0.0052 23.2 8.9 54 64-117 48-113 (404)
382 COG4018 Uncharacterized protei 36.6 42 0.00092 26.4 2.9 42 152-193 209-254 (505)
383 TIGR03572 WbuZ glycosyl amidat 36.2 1.8E+02 0.0038 21.5 7.4 42 149-193 184-228 (232)
384 cd01948 EAL EAL domain. This d 36.1 1.6E+02 0.0036 21.3 6.1 86 96-189 134-227 (240)
385 KOG3483 Uncharacterized conser 35.3 86 0.0019 18.5 3.4 41 145-185 34-74 (94)
386 PRK06856 DNA polymerase III su 35.2 78 0.0017 21.1 3.7 103 102-214 7-110 (128)
387 PF04358 DsrC: DsrC like prote 35.0 1.3E+02 0.0027 19.5 4.8 35 9-43 6-40 (109)
388 PF05116 S6PP: Sucrose-6F-phos 34.7 75 0.0016 23.8 4.1 41 99-141 27-67 (247)
389 COG0019 LysA Diaminopimelate d 34.6 68 0.0015 26.1 4.0 33 161-193 92-126 (394)
390 PRK09284 thiamine biosynthesis 34.6 1.5E+02 0.0033 25.3 5.9 54 70-125 292-346 (607)
391 COG2897 SseA Rhodanese-related 34.5 71 0.0015 24.7 3.9 50 145-194 69-124 (285)
392 KOG0208 Cation transport ATPas 34.3 1.2E+02 0.0025 28.1 5.5 89 93-186 649-744 (1140)
393 PF01380 SIS: SIS domain SIS d 34.3 69 0.0015 20.7 3.5 31 92-122 65-95 (131)
394 PF13911 AhpC-TSA_2: AhpC/TSA 34.1 1.2E+02 0.0025 19.4 4.4 33 98-131 4-36 (115)
395 PF00578 AhpC-TSA: AhpC/TSA fa 33.6 75 0.0016 20.3 3.6 35 95-130 47-81 (124)
396 TIGR03127 RuMP_HxlB 6-phospho 33.3 56 0.0012 22.9 3.1 31 92-122 84-114 (179)
397 TIGR03470 HpnH hopanoid biosyn 33.3 53 0.0012 25.7 3.2 30 89-118 82-111 (318)
398 PF04007 DUF354: Protein of un 33.3 1.2E+02 0.0026 24.1 5.1 89 96-193 16-111 (335)
399 PF02571 CbiJ: Precorrin-6x re 33.2 2.1E+02 0.0046 21.6 9.1 118 91-218 113-247 (249)
400 TIGR03840 TMPT_Se_Te thiopurin 33.2 1.8E+02 0.0039 21.3 5.7 46 147-193 17-64 (213)
401 PRK13256 thiopurine S-methyltr 33.2 1.8E+02 0.0039 21.7 5.7 47 146-193 25-73 (226)
402 KOG4779 Predicted membrane pro 32.3 36 0.00078 19.8 1.5 25 155-179 25-49 (82)
403 PRK05301 pyrroloquinoline quin 32.3 1.2E+02 0.0025 24.4 5.0 29 89-117 72-100 (378)
404 PRK13790 phosphoribosylamine-- 32.2 1.8E+02 0.0039 23.5 6.1 55 15-69 27-81 (379)
405 PF02017 CIDE-N: CIDE-N domain 32.1 35 0.00076 20.5 1.5 16 10-25 41-56 (78)
406 PLN02588 glycerol-3-phosphate 31.6 27 0.00059 29.3 1.3 33 99-132 138-170 (525)
407 TIGR03568 NeuC_NnaA UDP-N-acet 31.5 2.7E+02 0.0059 22.3 7.3 34 163-196 92-128 (365)
408 TIGR00288 conserved hypothetic 31.3 1.8E+02 0.004 20.3 6.5 30 10-39 25-54 (160)
409 PRK12857 fructose-1,6-bisphosp 31.1 2.5E+02 0.0055 21.8 7.6 96 95-195 5-107 (284)
410 PF03102 NeuB: NeuB family; I 30.7 2.2E+02 0.0048 21.4 5.9 88 96-188 102-197 (241)
411 PRK10812 putative DNAse; Provi 30.7 2.4E+02 0.0053 21.5 6.8 32 94-125 20-51 (265)
412 TIGR03859 PQQ_PqqD coenzyme PQ 30.7 1.1E+02 0.0024 18.3 3.6 44 62-108 36-79 (81)
413 COG5190 FCP1 TFIIF-interacting 30.3 1.6E+02 0.0034 24.0 5.2 81 91-176 252-332 (390)
414 cd05013 SIS_RpiR RpiR-like pro 30.1 63 0.0014 21.0 2.8 28 94-121 74-101 (139)
415 PLN02423 phosphomannomutase 29.9 95 0.0021 23.2 3.9 33 92-125 25-57 (245)
416 PF00875 DNA_photolyase: DNA p 29.8 1.1E+02 0.0023 21.2 3.9 46 93-143 52-97 (165)
417 PRK05835 fructose-bisphosphate 29.8 2.8E+02 0.006 21.8 7.2 96 95-195 4-107 (307)
418 PHA03050 glutaredoxin; Provisi 29.8 1.5E+02 0.0034 18.9 8.4 83 97-185 3-93 (108)
419 PF02698 DUF218: DUF218 domain 29.5 1.8E+02 0.0039 19.6 5.6 27 147-173 52-78 (155)
420 TIGR00715 precor6x_red precorr 29.5 57 0.0012 24.7 2.6 59 153-219 188-252 (256)
421 PRK13789 phosphoribosylamine-- 29.4 2.9E+02 0.0063 22.8 6.8 16 95-110 131-146 (426)
422 COG2875 CobM Precorrin-4 methy 29.4 2.5E+02 0.0054 21.2 6.2 74 97-176 149-232 (254)
423 KOG0391 SNF2 family DNA-depend 29.3 2E+02 0.0044 27.6 6.1 86 97-193 1266-1354(1958)
424 PF03808 Glyco_tran_WecB: Glyc 29.1 2E+02 0.0044 20.1 7.1 73 96-175 37-111 (172)
425 PRK14129 heat shock protein Hs 29.1 57 0.0012 20.7 2.1 20 7-26 17-36 (105)
426 COG2241 CobL Precorrin-6B meth 29.0 2.4E+02 0.0051 20.8 7.3 76 107-193 68-148 (210)
427 cd04795 SIS SIS domain. SIS (S 28.9 67 0.0014 18.9 2.5 23 92-114 59-81 (87)
428 smart00481 POLIIIAc DNA polyme 28.9 95 0.0021 17.5 3.0 23 95-117 16-38 (67)
429 COG0378 HypB Ni2+-binding GTPa 28.7 2.3E+02 0.0051 20.6 7.5 74 96-176 30-107 (202)
430 smart00497 IENR1 Intron encode 28.7 63 0.0014 17.1 2.2 27 10-40 3-29 (53)
431 TIGR02109 PQQ_syn_pqqE coenzym 28.6 80 0.0017 25.1 3.5 29 89-117 63-91 (358)
432 cd05007 SIS_Etherase N-acetylm 28.6 2.6E+02 0.0057 21.2 9.1 93 99-193 42-153 (257)
433 TIGR00664 DNA_III_psi DNA poly 28.5 1.1E+02 0.0024 20.6 3.5 84 102-193 8-91 (133)
434 PF10307 DUF2410: Hypothetical 28.2 2.4E+02 0.0051 20.5 8.7 75 106-184 70-152 (197)
435 TIGR03151 enACPred_II putative 28.2 2.9E+02 0.0064 21.6 8.6 87 98-194 100-192 (307)
436 COG3453 Uncharacterized protei 28.1 1.5E+02 0.0033 19.6 4.0 59 135-193 29-95 (130)
437 PRK06100 DNA polymerase III su 28.1 1.7E+02 0.0037 19.7 4.4 87 101-193 7-94 (132)
438 PRK07084 fructose-bisphosphate 27.9 3.1E+02 0.0067 21.8 7.8 99 94-195 10-118 (321)
439 TIGR02845 spore_V_AD stage V s 27.4 2.3E+02 0.005 22.5 5.6 67 127-193 24-103 (327)
440 cd01773 Faf1_like1_UBX Faf1 ik 27.3 67 0.0014 19.5 2.2 18 157-174 64-81 (82)
441 TIGR00640 acid_CoA_mut_C methy 27.3 1.9E+02 0.0041 19.3 4.6 20 97-116 43-62 (132)
442 PRK01018 50S ribosomal protein 27.3 1.7E+02 0.0036 18.4 4.2 35 91-125 16-50 (99)
443 PRK13255 thiopurine S-methyltr 27.2 2.6E+02 0.0055 20.6 5.8 47 146-193 19-67 (218)
444 PRK06801 hypothetical protein; 27.2 3E+02 0.0065 21.4 7.8 96 94-193 4-105 (286)
445 cd05015 SIS_PGI_1 Phosphogluco 27.0 2.1E+02 0.0046 19.6 7.0 85 106-193 48-138 (158)
446 PRK00748 1-(5-phosphoribosyl)- 26.9 2.6E+02 0.0056 20.5 7.7 42 149-193 177-221 (233)
447 PRK13937 phosphoheptose isomer 26.9 82 0.0018 22.4 3.0 30 92-121 118-147 (188)
448 KOG0780 Signal recognition par 26.6 3.7E+02 0.008 22.2 8.0 45 135-180 184-229 (483)
449 cd05017 SIS_PGI_PMI_1 The memb 26.6 79 0.0017 20.4 2.7 26 92-117 55-80 (119)
450 PF02196 RBD: Raf-like Ras-bin 26.4 83 0.0018 18.4 2.4 28 144-171 17-44 (71)
451 PRK11303 DNA-binding transcrip 26.3 3.1E+02 0.0066 21.2 8.8 21 95-115 166-187 (328)
452 cd01454 vWA_norD_type norD typ 26.3 2.2E+02 0.0047 19.7 5.1 50 147-196 83-153 (174)
453 COG3010 NanE Putative N-acetyl 26.2 2.7E+02 0.0059 20.5 6.3 80 138-219 101-184 (229)
454 COG0052 RpsB Ribosomal protein 25.8 3E+02 0.0065 20.9 8.8 35 166-200 157-194 (252)
455 PRK13125 trpA tryptophan synth 25.7 2.9E+02 0.0063 20.7 8.5 94 94-193 116-215 (244)
456 cd05006 SIS_GmhA Phosphoheptos 25.7 75 0.0016 22.2 2.6 30 91-120 112-141 (177)
457 cd05005 SIS_PHI Hexulose-6-pho 25.7 84 0.0018 22.0 2.9 31 92-122 87-117 (179)
458 PF01990 ATP-synt_F: ATP synth 25.6 1.2E+02 0.0025 18.8 3.2 24 168-192 1-24 (95)
459 COG1058 CinA Predicted nucleot 25.5 80 0.0017 23.9 2.8 46 148-194 20-69 (255)
460 cd04732 HisA HisA. Phosphorib 25.5 2.8E+02 0.006 20.4 7.6 42 149-193 177-220 (234)
461 PRK08610 fructose-bisphosphate 25.5 3.3E+02 0.0071 21.2 8.0 98 95-195 5-110 (286)
462 PF05402 PqqD: Coenzyme PQQ sy 25.5 98 0.0021 17.4 2.7 16 93-108 51-66 (68)
463 PRK02228 V-type ATP synthase s 25.4 1.1E+02 0.0024 19.2 3.1 26 167-193 2-27 (100)
464 KOG0023 Alcohol dehydrogenase, 25.2 1E+02 0.0022 24.5 3.2 57 155-211 171-234 (360)
465 COG1117 PstB ABC-type phosphat 25.1 1.1E+02 0.0023 22.9 3.2 25 95-120 187-211 (253)
466 TIGR01101 V_ATP_synt_F vacuola 24.9 2.1E+02 0.0045 18.7 5.1 36 94-130 46-82 (115)
467 PRK00075 cbiD cobalt-precorrin 24.9 3.8E+02 0.0082 21.7 7.3 41 153-193 212-253 (361)
468 PF11071 DUF2872: Protein of u 24.8 2.3E+02 0.0049 19.1 4.9 113 98-219 13-137 (141)
469 PRK00994 F420-dependent methyl 24.7 1.5E+02 0.0032 22.4 3.8 40 91-131 71-110 (277)
470 PF01116 F_bP_aldolase: Fructo 24.4 99 0.0021 24.0 3.2 95 96-194 5-105 (287)
471 cd03018 PRX_AhpE_like Peroxire 24.3 1.6E+02 0.0036 19.5 4.1 36 95-131 50-85 (149)
472 cd06533 Glyco_transf_WecG_TagA 24.2 2.6E+02 0.0056 19.6 6.1 21 97-117 36-56 (171)
473 cd01820 PAF_acetylesterase_lik 24.2 70 0.0015 23.2 2.3 24 154-177 21-44 (214)
474 PF13426 PAS_9: PAS domain; PD 24.1 99 0.0021 18.5 2.8 21 11-31 4-24 (104)
475 PRK11449 putative deoxyribonuc 24.1 3.2E+02 0.007 20.7 8.3 31 95-125 20-50 (258)
476 cd04906 ACT_ThrD-I_1 First of 24.0 1.1E+02 0.0024 18.4 2.8 26 94-119 53-78 (85)
477 TIGR00441 gmhA phosphoheptose 24.0 83 0.0018 21.5 2.5 29 92-120 91-119 (154)
478 PRK11070 ssDNA exonuclease Rec 24.0 4.9E+02 0.011 22.7 10.1 98 91-193 50-159 (575)
479 PF09949 DUF2183: Uncharacteri 23.8 2E+02 0.0043 18.2 6.3 30 151-182 52-82 (100)
480 COG3655 Predicted transcriptio 23.7 1.2E+02 0.0027 17.9 2.8 24 152-175 46-69 (73)
481 PF08444 Gly_acyl_tr_C: Aralky 23.5 1.9E+02 0.0042 17.9 3.9 34 97-131 42-75 (89)
482 PF13188 PAS_8: PAS domain; PD 23.3 1.1E+02 0.0025 16.7 2.7 23 8-31 11-33 (64)
483 cd03017 PRX_BCP Peroxiredoxin 23.3 1.8E+02 0.0039 19.0 4.1 34 97-131 47-80 (140)
484 KOG1461 Translation initiation 23.2 5.2E+02 0.011 22.8 7.4 84 94-178 56-140 (673)
485 KOG2900 Biotin synthase [Coenz 23.1 2.3E+02 0.0051 21.5 4.7 77 93-187 153-229 (380)
486 PF14824 Sirohm_synth_M: Siroh 23.1 1E+02 0.0022 14.6 2.4 19 107-125 4-22 (30)
487 COG0859 RfaF ADP-heptose:LPS h 22.8 3.9E+02 0.0084 21.1 8.5 85 93-193 194-278 (334)
488 PF14026 DUF4242: Protein of u 22.7 1.3E+02 0.0029 17.9 2.9 24 146-169 52-75 (77)
489 COG0263 ProB Glutamate 5-kinas 22.3 99 0.0022 24.7 2.8 24 96-119 33-56 (369)
490 PF05724 TPMT: Thiopurine S-me 22.0 2.2E+02 0.0048 20.9 4.5 48 145-193 18-67 (218)
491 cd06589 GH31 The enzymes of gl 22.0 1.1E+02 0.0025 23.1 3.1 28 91-118 63-90 (265)
492 COG3785 Uncharacterized conser 22.0 54 0.0012 20.8 1.1 21 7-27 26-46 (116)
493 COG2920 DsrC Dissimilatory sul 21.9 2.3E+02 0.0049 18.1 5.5 67 8-80 7-73 (111)
494 PRK00414 gmhA phosphoheptose i 21.8 1.3E+02 0.0027 21.6 3.2 29 92-120 123-151 (192)
495 PRK10518 alkaline phosphatase; 21.8 67 0.0015 26.9 1.9 59 167-225 72-144 (476)
496 PF13588 HSDR_N_2: Type I rest 21.7 1.1E+02 0.0025 19.3 2.7 26 94-119 68-93 (112)
497 PRK13602 putative ribosomal pr 21.7 2E+02 0.0043 17.3 4.0 35 91-125 11-45 (82)
498 PF01888 CbiD: CbiD; InterPro 21.7 3.8E+02 0.0082 20.6 6.3 40 153-192 209-249 (261)
499 PF04273 DUF442: Putative phos 21.6 1.1E+02 0.0023 19.8 2.5 14 180-193 52-65 (110)
500 PF06616 BsuBI_PstI_RE: BsuBI/ 21.5 1.2E+02 0.0026 23.7 3.1 37 150-186 163-207 (306)
No 1
>PLN02940 riboflavin kinase
Probab=100.00 E-value=2.5e-36 Score=235.75 Aligned_cols=222 Identities=76% Similarity=1.203 Sum_probs=195.7
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHhh
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 86 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
..+++|+||+||||+|+...+..++..+++++|...+.+......+.+....+..+++.++.....+++...+.+.+.+.
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLLSEQ 88 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999988777777788888888888888888887766666666666666665
Q ss_pred hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCC
Q 026853 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (232)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 166 (232)
+....++||+.++|+.|+++|++++|+||.....+...+.++.++..+|+.+++++++...||+|+.|..++++++++|+
T Consensus 89 ~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~ 168 (382)
T PLN02940 89 WCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPS 168 (382)
T ss_pred HccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChh
Confidence 66778999999999999999999999999999988888833789999999999999999999999999999999999999
Q ss_pred cEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCccccCCCCCCCCC
Q 026853 167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDCK 228 (232)
Q Consensus 167 ~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~~~~~~~~~~ 228 (232)
+|++|||+.+|+.+|+++|+.++++.++.........+++++.+++|+...-.++|.|++|+
T Consensus 169 ~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~~~~~~~~~~~~~ 230 (382)
T PLN02940 169 NCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEKWGLPPFNDWI 230 (382)
T ss_pred HEEEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHcCHHHcCCCCccccc
Confidence 99999999999999999999999999865444445678999999999998888899999876
No 2
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=100.00 E-value=7.6e-35 Score=213.56 Aligned_cols=210 Identities=21% Similarity=0.375 Sum_probs=171.4
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCc-chhhhhcCCChHHHHHHHHHHcCCC-ccHHhHHHHHHHHHH
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG-REKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFS 84 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (232)
.++++|+||+||||+|+...+..++..++.+++...+. ..+....+.........+....+.. .........+.+.+.
T Consensus 5 ~~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIARVI 84 (222)
T ss_pred ccCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999987655 4455666766555555554444322 223344444444443
Q ss_pred hh-hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCC
Q 026853 85 DH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (232)
Q Consensus 85 ~~-~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 163 (232)
+. .....++||+.++|+.|+++|++++|+||+....+...+ +++++..+|+.+++++..+.+||+|+.++.+++++|+
T Consensus 85 ~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 163 (222)
T PRK10826 85 SLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVL-TMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGV 163 (222)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-HhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCC
Confidence 33 345789999999999999999999999999999999888 8899999999999999999999999999999999999
Q ss_pred CCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccc-cchhhhHhhhhccCcCcc
Q 026853 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINSLLDLRPE 217 (232)
Q Consensus 164 ~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~l~el~~~ 217 (232)
+|++|++|||+.+|+.+|+++|++++++..+....+ ....++.++.++.|+...
T Consensus 164 ~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~~ 218 (222)
T PRK10826 164 DPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAA 218 (222)
T ss_pred CHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhhh
Confidence 999999999999999999999999999998654432 245689999999998553
No 3
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=100.00 E-value=4.3e-35 Score=213.81 Aligned_cols=211 Identities=25% Similarity=0.396 Sum_probs=178.3
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCC-CCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHh
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
+++++|+||+||||+|+...+..++..++++++.. .+.+.+....+......+............. +....+.+.+..
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAA-ELVERLREEFLT 80 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHH-HHHHHHHHHHHH
Confidence 57899999999999999999999999999999988 6777888888888877766665443333211 344444444443
Q ss_pred hhcc---CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcC
Q 026853 86 HLCK---VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (232)
Q Consensus 86 ~~~~---~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~ 162 (232)
.+.. ..++||+.++|.+|++.|++++|+||.+...+...+ +++|+..+|+.+++.+.....||+|..+..+++.++
T Consensus 81 ~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l-~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~ 159 (220)
T COG0546 81 AYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILL-KALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLG 159 (220)
T ss_pred HHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhC
Confidence 3322 579999999999999999999999999999999999 889999999999998888999999999999999999
Q ss_pred CCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCC-cc-ccchhhhHhhhhccCcCcccc
Q 026853 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK-QT-HRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 163 ~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~-~~-~~~~~~~~~~~~l~el~~~l~ 219 (232)
++|++++||||+.+|+.+|+++|+.+++|.+|+. .. .....++++++++.|+...+.
T Consensus 160 ~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~~~l~ 218 (220)
T COG0546 160 LDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELLALLA 218 (220)
T ss_pred CChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHHHHHh
Confidence 9988999999999999999999999999999864 22 226779999999999987664
No 4
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=100.00 E-value=9.3e-35 Score=213.01 Aligned_cols=208 Identities=24% Similarity=0.364 Sum_probs=171.6
Q ss_pred ccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhh-hcCCChHHHHHHHHHHcCCCc-cHHhHHHHHHHHHHhh
Q 026853 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK-IVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMFSDH 86 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 86 (232)
+|+|+||+||||+|+...+..++..++++++.+.+...... ..+......+..++...+.+. ...++...+.+.+.+.
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAEA 80 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999998776666655 677777777777777666431 1222334444444433
Q ss_pred hc--cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc--cccceeecccccCCCCCCHHHHHHHHHhcC
Q 026853 87 LC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (232)
Q Consensus 87 ~~--~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~--~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~ 162 (232)
+. ..+++||+.++|++|+++|++++|+||+....+...+ +++++. .+|+.++++++....||+|..+..++++++
T Consensus 81 ~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l-~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~ 159 (220)
T TIGR03351 81 YDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLL-EKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTG 159 (220)
T ss_pred hcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcC
Confidence 32 4589999999999999999999999999999999999 888998 999999999999899999999999999999
Q ss_pred CC-CCcEEEEeCchhhhhhhhhcCCEE-EEeCCCCCcccc--chhhhHhhhhccCcCcc
Q 026853 163 ME-PSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHR--YTAADEVINSLLDLRPE 217 (232)
Q Consensus 163 ~~-~~~~~~vgD~~~Di~~a~~~G~~~-i~v~~~~~~~~~--~~~~~~~~~~l~el~~~ 217 (232)
+. |+++++|||+.+|+.+|+++|+.+ +++..|...... ...+++++++++|+...
T Consensus 160 ~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l~~~ 218 (220)
T TIGR03351 160 VQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADLPAL 218 (220)
T ss_pred CCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHHHHh
Confidence 97 799999999999999999999999 899876544332 35688888999887654
No 5
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=100.00 E-value=1.7e-34 Score=210.76 Aligned_cols=205 Identities=22% Similarity=0.297 Sum_probs=168.2
Q ss_pred EEEeCCCcccccHHHHHHHHHHHHHHcCCC-CCcchhhhhcCCChHHHHHHHHHHcCCCccH---HhHHHHHHHHHHhhh
Q 026853 12 VILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAK---HEFVNEVYSMFSDHL 87 (232)
Q Consensus 12 i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 87 (232)
|+||+||||+|+...+..++..++++++.. .+.+.+....+......+..++..++..... .++.+.+.+.+.+..
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEEVA 80 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHHhc
Confidence 689999999999888889999999999885 4555666667777666667766666544332 223333444443332
Q ss_pred -ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCC
Q 026853 88 -CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (232)
Q Consensus 88 -~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 166 (232)
....++||+.++|+.|+++|++++|+||+....+...+ +++++..+|+.++++++....||+|+.|..+++++|++|+
T Consensus 81 ~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~ 159 (213)
T TIGR01449 81 GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLL-ELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQ 159 (213)
T ss_pred cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChh
Confidence 24679999999999999999999999999999899888 8899999999999999988999999999999999999999
Q ss_pred cEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc--chhhhHhhhhccCcCcc
Q 026853 167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPE 217 (232)
Q Consensus 167 ~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~~~~~~~~l~el~~~ 217 (232)
++++|||+.+|+.+|+++|+.++++.+|...... ...++++++++.|+..+
T Consensus 160 ~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~~~ 212 (213)
T TIGR01449 160 QMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELPPL 212 (213)
T ss_pred HeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHHHhh
Confidence 9999999999999999999999999886543322 35788999999988654
No 6
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=100.00 E-value=9.9e-35 Score=211.85 Aligned_cols=205 Identities=23% Similarity=0.341 Sum_probs=166.3
Q ss_pred cccEEEEeCCCcccccHHHHHHHHHHHHHHcCCC-CCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHhh
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 86 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
++++|+||+||||+|+...+..++..++++++.. .+.+.+....|.+....+..+ . ....+.+...+...+...
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~ 76 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKI----D-ESKVEEMITTYREFNHEH 76 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhc----C-HHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999998753 455566677777655544332 1 112233333333333322
Q ss_pred -hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCC
Q 026853 87 -LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (232)
Q Consensus 87 -~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (232)
.....++||+.++|+.|+++|++++|+||.....+...+ +.+|+..+|+.++++++....||+|..+.++++++++++
T Consensus 77 ~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l-~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~ 155 (214)
T PRK13288 77 HDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGL-KLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKP 155 (214)
T ss_pred hhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCH
Confidence 235679999999999999999999999999999999899 999999999999999999999999999999999999999
Q ss_pred CcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc--chhhhHhhhhccCcCccc
Q 026853 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEK 218 (232)
Q Consensus 166 ~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~~~~~~~~l~el~~~l 218 (232)
+++++|||+.+|+.+|+++|+.++++.++...... ...++++++++.|+.+.+
T Consensus 156 ~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~i 210 (214)
T PRK13288 156 EEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAIV 210 (214)
T ss_pred HHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHHH
Confidence 99999999999999999999999999986543322 346889999999987754
No 7
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=2e-34 Score=214.03 Aligned_cols=205 Identities=26% Similarity=0.350 Sum_probs=162.7
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHHHHHHHcCC----CCCcchh-hhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHH
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGK----EWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYS 81 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (232)
.++++|+||+||||+|+...+..++..++++++. +.+.+.+ ....|.+....+..++.. ... ...++...+..
T Consensus 20 ~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~-~~~~~~~~~~~ 97 (248)
T PLN02770 20 APLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPD-DLE-RGLKFTDDKEA 97 (248)
T ss_pred CccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCc-chh-hHHHHHHHHHH
Confidence 4689999999999999999999999999999864 3333332 345666655554443321 111 11122223333
Q ss_pred HHHhhh-ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHh
Q 026853 82 MFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (232)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~ 160 (232)
.+.+.. ....++||+.++|++|+++|++++|+||.....+...+ +++++..+|+.++++++....||+|+.|..++++
T Consensus 98 ~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~ 176 (248)
T PLN02770 98 LFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMI-SLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEV 176 (248)
T ss_pred HHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCChhhCcEEEecCcCCCCCCChHHHHHHHHH
Confidence 333332 35789999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc-chhhhHhhhhccCc
Q 026853 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDL 214 (232)
Q Consensus 161 ~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~~~~~~~~l~el 214 (232)
++++|+++++|||+.+|+.+|+++|+.++++.+++..... ...++++++++.|+
T Consensus 177 ~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~ 231 (248)
T PLN02770 177 LKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDP 231 (248)
T ss_pred hCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhh
Confidence 9999999999999999999999999999999986543333 45789999999983
No 8
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=1.6e-34 Score=212.33 Aligned_cols=211 Identities=21% Similarity=0.345 Sum_probs=166.6
Q ss_pred cccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCC-CCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHH
Q 026853 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS 84 (232)
Q Consensus 6 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
..|+|+|+||+||||+|+...+..++..+++++|.+ .+.+.+....+.+............. ....+++...+.+.+.
T Consensus 9 ~~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 87 (229)
T PRK13226 9 VRFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELD-AAARDALIPEFLQRYE 87 (229)
T ss_pred cccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCC-hHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999975 34445555555554443333222111 1112334444554444
Q ss_pred hhh-ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCC
Q 026853 85 DHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (232)
Q Consensus 85 ~~~-~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 163 (232)
... ....++||+.++|+.|++.|++++++||+........+ +++++..+|+.+++++.....||+|+.+.++++++|+
T Consensus 88 ~~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~ 166 (229)
T PRK13226 88 ALIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLIL-PQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGV 166 (229)
T ss_pred HhhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCC
Confidence 432 35689999999999999999999999999988888788 8899999999999888888899999999999999999
Q ss_pred CCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcc-cc--chhhhHhhhhccCcCccc
Q 026853 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT-HR--YTAADEVINSLLDLRPEK 218 (232)
Q Consensus 164 ~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~-~~--~~~~~~~~~~l~el~~~l 218 (232)
+|+++++|||+.+|+.+|+++|+.++++.+|.... .. ...+++++++++|+...+
T Consensus 167 ~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~~ 224 (229)
T PRK13226 167 APTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLWNPA 224 (229)
T ss_pred ChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHHHHh
Confidence 99999999999999999999999999998876422 22 356899999999986654
No 9
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=100.00 E-value=3.6e-34 Score=212.71 Aligned_cols=209 Identities=22% Similarity=0.306 Sum_probs=165.5
Q ss_pred cccEEEEeCCCcccccH-HHHHHHHHHHHHHcCCCCCcchh-hhhcCCChHHHHHHHHHHcCCCc-cHHhHHHHHHHHHH
Q 026853 8 LMSCVILDLDGTLLNTD-GMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMFS 84 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 84 (232)
.+|+|+||+||||+|+. ..+..++..+++++|........ ....|.+....+..++.. .... ....+...+...+.
T Consensus 23 ~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~ 101 (260)
T PLN03243 23 GWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCW-SRDFLQMKRLAIRKEDLYE 101 (260)
T ss_pred CceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Confidence 57999999999999995 56677999999999987655544 567787776666555431 1111 11222333333332
Q ss_pred hhh-ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCC
Q 026853 85 DHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (232)
Q Consensus 85 ~~~-~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 163 (232)
... ....++||+.++|+.|+++|++++|+||.....+...+ +++|+..+|+.++++++....||+|+.|..+++++|+
T Consensus 102 ~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~ 180 (260)
T PLN03243 102 YMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAI-EAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGF 180 (260)
T ss_pred HHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHH-HHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCC
Confidence 221 24678999999999999999999999999999999888 9899999999999999999999999999999999999
Q ss_pred CCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 164 ~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
++++|++|||+.+|+.+|+++|+.++++.+ .........+++++++++|+....+
T Consensus 181 ~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g-~~~~~~l~~ad~vi~~~~el~~~~~ 235 (260)
T PLN03243 181 IPERCIVFGNSNSSVEAAHDGCMKCVAVAG-KHPVYELSAGDLVVRRLDDLSVVDL 235 (260)
T ss_pred ChHHeEEEcCCHHHHHHHHHcCCEEEEEec-CCchhhhccCCEEeCCHHHHHHHHH
Confidence 999999999999999999999999999974 3333334467888899988876655
No 10
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=100.00 E-value=4.1e-34 Score=213.60 Aligned_cols=209 Identities=17% Similarity=0.236 Sum_probs=163.7
Q ss_pred ccEEEEeCCCcccccHH-HHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHH----------HHHHHcCCCccHHh---
Q 026853 9 MSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA----------IIVEDYGLPCAKHE--- 74 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--- 74 (232)
+++|+||+||||+|+.. .+..++.++++++|...+.+.+....|.+....+. .+.+.++.....+.
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPTEADIEA 81 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHHHH
Confidence 68999999999999854 34678888999999876666666666665443322 23344454332222
Q ss_pred HHHHHHHHHHhh-hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcccc-ceeecccccCCCCCCHH
Q 026853 75 FVNEVYSMFSDH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSPD 152 (232)
Q Consensus 75 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~-~~~~~~~~~~~~kp~~~ 152 (232)
+...+...+.+. .....++||+.++|+.|+++|++++|+||.....+...+ +++|+..+| +.++++++....||+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l-~~~gl~~~f~d~ii~~~~~~~~KP~p~ 160 (253)
T TIGR01422 82 IYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVA-PEAALQGYRPDYNVTTDDVPAGRPAPW 160 (253)
T ss_pred HHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HHHHhcCCCCceEEccccCCCCCCCHH
Confidence 223333333222 245789999999999999999999999999999999888 888999986 89999999999999999
Q ss_pred HHHHHHHhcCCC-CCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCc------------------------ccc-chhhhH
Q 026853 153 IFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ------------------------THR-YTAADE 206 (232)
Q Consensus 153 ~~~~~~~~~~~~-~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~------------------------~~~-~~~~~~ 206 (232)
.|..+++++|+. |+++++|||+.+|+.+|+++|+.+|+|.+|... ... ..+|++
T Consensus 161 ~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (253)
T TIGR01422 161 MALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGAHY 240 (253)
T ss_pred HHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 999999999995 999999999999999999999999999987642 122 457899
Q ss_pred hhhhccCcCccc
Q 026853 207 VINSLLDLRPEK 218 (232)
Q Consensus 207 ~~~~l~el~~~l 218 (232)
+++++.|+.+.+
T Consensus 241 v~~~~~el~~~~ 252 (253)
T TIGR01422 241 VIDTLAELPAVI 252 (253)
T ss_pred ehhcHHHHHHhh
Confidence 999999986553
No 11
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=100.00 E-value=1.6e-33 Score=206.60 Aligned_cols=208 Identities=23% Similarity=0.344 Sum_probs=170.8
Q ss_pred cccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcch-hhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHhh
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 86 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
++++|+||+||||+|+...+.+++.++++++|...+.+. .....+.+....+..+...++.....+++...+...+...
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRAEVARL 82 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999998888999999999998766544 3455667777888888888877655555555555444332
Q ss_pred -hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccc-eeecccccCCCCCCHHHHHHHHHhcCCC
Q 026853 87 -LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (232)
Q Consensus 87 -~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (232)
.....++||+.++|+.|+ ++++|+||+....+...+ +++++..+|+ .++++++.+..||+|+.|..+++++|++
T Consensus 83 ~~~~~~~~~gv~~~L~~L~---~~~~ivTn~~~~~~~~~l-~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~ 158 (221)
T PRK10563 83 FDSELEPIAGANALLESIT---VPMCVVSNGPVSKMQHSL-GKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVN 158 (221)
T ss_pred HHccCCcCCCHHHHHHHcC---CCEEEEeCCcHHHHHHHH-HhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCC
Confidence 245789999999999983 899999999998888888 8899999996 6777878889999999999999999999
Q ss_pred CCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 165 ~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
|++|++|||+.+|+.+|+++|++++++..+.........++.++.++.|+.+.+.
T Consensus 159 p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (221)
T PRK10563 159 VENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQLPELWK 213 (221)
T ss_pred HHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997643333334566778899999887654
No 12
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=100.00 E-value=1.5e-33 Score=216.19 Aligned_cols=207 Identities=25% Similarity=0.288 Sum_probs=168.4
Q ss_pred cccEEEEeCCCcccccHH-HHHHHHHHHHHHcCCCCCcch-hhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHh
Q 026853 8 LMSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
..++|+||+||||+|+.. .+..++..+++++|....... .....|.+....+..++.........+++...+.+.+.+
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~y~~ 209 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEEIYQA 209 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999976 555688889999998765554 467788888777766654322111223344444444443
Q ss_pred hh-ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCC
Q 026853 86 HL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (232)
Q Consensus 86 ~~-~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (232)
.. ....++||+.++|+.|+++|++++|+||.....+...+ +++|+..+|+.++++++....||+|+.|..+++++|+.
T Consensus 210 ~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L-~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~ 288 (381)
T PLN02575 210 LQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAI-GSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFI 288 (381)
T ss_pred HhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCC
Confidence 33 34678999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCc
Q 026853 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (232)
Q Consensus 165 ~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~ 216 (232)
|++|++|||+..|+++|+++|+.+|+|.+++...+ ...++++++++.||..
T Consensus 289 Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~~-l~~Ad~iI~s~~EL~~ 339 (381)
T PLN02575 289 PERCIVFGNSNQTVEAAHDARMKCVAVASKHPIYE-LGAADLVVRRLDELSI 339 (381)
T ss_pred cccEEEEcCCHHHHHHHHHcCCEEEEECCCCChhH-hcCCCEEECCHHHHHH
Confidence 99999999999999999999999999987543332 3458888999999844
No 13
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=100.00 E-value=4.7e-34 Score=214.61 Aligned_cols=213 Identities=18% Similarity=0.240 Sum_probs=165.0
Q ss_pred ccccEEEEeCCCcccccHHH-HHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHH----------HHHcCCCccHH--
Q 026853 7 KLMSCVILDLDGTLLNTDGM-FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAII----------VEDYGLPCAKH-- 73 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-- 73 (232)
+++|+|+||+||||+|+... +..++.++++++|.+.+.+......|......+..+ ...++......
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 81 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRLPTEADV 81 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCCCCHHHH
Confidence 46899999999999998543 367888999999987666666666666554433322 23344432222
Q ss_pred -hHHHHHHHHHHhh-hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcccc-ceeecccccCCCCCC
Q 026853 74 -EFVNEVYSMFSDH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPS 150 (232)
Q Consensus 74 -~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~-~~~~~~~~~~~~kp~ 150 (232)
++...+...+.+. .....++||+.++|+.|+++|++++|+||.....+...+ +.+++..+| +.++++++....||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l-~~~~l~~~~~d~i~~~~~~~~~KP~ 160 (267)
T PRK13478 82 DALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVV-PLAAAQGYRPDHVVTTDDVPAGRPY 160 (267)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHHhhcCCCceEEEcCCcCCCCCCC
Confidence 2233333333322 235689999999999999999999999999999888888 777887774 888999998899999
Q ss_pred HHHHHHHHHhcCCC-CCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCc------------------------ccc-chhh
Q 026853 151 PDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ------------------------THR-YTAA 204 (232)
Q Consensus 151 ~~~~~~~~~~~~~~-~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~------------------------~~~-~~~~ 204 (232)
|..|..+++++|+. ++++++|||+.+|+.+|+++|+.+|+|.+|... ... ...+
T Consensus 161 p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a 240 (267)
T PRK13478 161 PWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAGA 240 (267)
T ss_pred hHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999996 699999999999999999999999999987642 122 4578
Q ss_pred hHhhhhccCcCccccC
Q 026853 205 DEVINSLLDLRPEKWG 220 (232)
Q Consensus 205 ~~~~~~l~el~~~l~~ 220 (232)
+++++++.|+.+.+..
T Consensus 241 ~~vi~~~~~l~~~l~~ 256 (267)
T PRK13478 241 HYVIDTIADLPAVIAD 256 (267)
T ss_pred CeehhhHHHHHHHHHH
Confidence 9999999999877643
No 14
>PRK11587 putative phosphatase; Provisional
Probab=100.00 E-value=1.7e-33 Score=205.72 Aligned_cols=202 Identities=27% Similarity=0.403 Sum_probs=157.0
Q ss_pred cccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHH--HH-
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM--FS- 84 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 84 (232)
++|+|+||+||||+|+...+..++..+++++|.+. .+......|.+....++.+... ...+.+...+... +.
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP-DEVLNFIHGKQAITSLRHFMAG----ASEAEIQAEFTRLEQIEA 76 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH-HHHHHHHcCCCHHHHHHHHhcc----CCcHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999754 2223333466655554444321 1223333333221 11
Q ss_pred hhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCC
Q 026853 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (232)
.......++||+.++|+.|+++|++++++||+........+ +..++ .+++.++++++....||+|..|..+++++|+.
T Consensus 77 ~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l-~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~ 154 (218)
T PRK11587 77 TDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARH-KAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLA 154 (218)
T ss_pred hhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHH-HhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCC
Confidence 12345689999999999999999999999999887777677 77777 45788888888888999999999999999999
Q ss_pred CCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCcc
Q 026853 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (232)
Q Consensus 165 ~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~ 217 (232)
|+++++|||+.+|+.+|+++|+.++++.++.... ....+++++++++|+...
T Consensus 155 p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~~-~~~~~~~~~~~~~el~~~ 206 (218)
T PRK11587 155 PQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTP-RLDEVDLVLHSLEQLTVT 206 (218)
T ss_pred cccEEEEecchhhhHHHHHCCCEEEEECCCCchh-hhccCCEEecchhheeEE
Confidence 9999999999999999999999999998865332 345688999999998644
No 15
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=204.63 Aligned_cols=209 Identities=33% Similarity=0.488 Sum_probs=173.6
Q ss_pred cccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCc--cHHhHHHHHHHHHHh
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSD 85 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 85 (232)
++++++||+||||+|+...+..+|.++++++|+..+.+......+.........+.+...... +..............
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEAL 80 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999988888878888777777777777665432 222333333333334
Q ss_pred hhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCC
Q 026853 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (232)
......+.||+.++|++|+++|+++++.|++.+..+.+.+ ...|+.++|+.+++++++..+||+|..|..+++++|+.|
T Consensus 81 ~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L-~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P 159 (221)
T COG0637 81 ELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVL-ARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDP 159 (221)
T ss_pred hhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHH-HHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCCh
Confidence 4467899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CcEEEEeCchhhhhhhhhcCCEEEEeCCCCCc----cccchhhhHhhhhccCcCcc
Q 026853 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ----THRYTAADEVINSLLDLRPE 217 (232)
Q Consensus 166 ~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~----~~~~~~~~~~~~~l~el~~~ 217 (232)
++|++|+|+.+.+.+++++||.++++..++.. ......++....++.++...
T Consensus 160 ~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (221)
T COG0637 160 EECVVVEDSPAGIQAAKAAGMRVVGVPAGHDRPHLDPLDAHGADTVLLDLAELPAL 215 (221)
T ss_pred HHeEEEecchhHHHHHHHCCCEEEEecCCCCccccchhhhhhcchhhccHHHHHHH
Confidence 99999999999999999999999999985443 22245555666666655433
No 16
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=9.1e-33 Score=203.47 Aligned_cols=212 Identities=22% Similarity=0.295 Sum_probs=170.8
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCC-CcchhhhhcCCChHHHHHHHHHHcCCCccHHh---HHHHHHHH
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW-DGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVYSM 82 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 82 (232)
+++++|+||+||||+++...+..++..++++++.+. +...+....+......+...+...+.....++ ....+.+.
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGREPDEELLEKLRELFDRH 83 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Confidence 568999999999999998888889999999998753 45556666777666666666554433332222 22333333
Q ss_pred HHhhh-ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhc
Q 026853 83 FSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (232)
Q Consensus 83 ~~~~~-~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~ 161 (232)
+.... ....++||+.++++.|++.|++++++||+........+ +++++..+|+.+++++.....||+|.+++.+++++
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 162 (226)
T PRK13222 84 YAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLL-EALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKL 162 (226)
T ss_pred HHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHc
Confidence 33322 24679999999999999999999999999999888888 88999999999999998889999999999999999
Q ss_pred CCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc--chhhhHhhhhccCcCcccc
Q 026853 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 162 ~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~~~~~~~~l~el~~~l~ 219 (232)
+++++++++|||+.+|+++|+++|+.++++.+|...... ...+++++++++|+...+.
T Consensus 163 ~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~~l~ 222 (226)
T PRK13222 163 GLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLPLLG 222 (226)
T ss_pred CCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHHHHHH
Confidence 999999999999999999999999999999986543222 4578899999999877654
No 17
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=3.7e-33 Score=209.40 Aligned_cols=212 Identities=25% Similarity=0.298 Sum_probs=168.1
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCC-cchhhhhcCCChHHHHHHHHHH----cCCC-ccHHhHHHHHH
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD-GREKHKIVGKTPLEEAAIIVED----YGLP-CAKHEFVNEVY 80 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~ 80 (232)
.++|+|+||+||||+|+...+..++..++++++.... .+.+....+.+.......++.. .+.+ ...++....+.
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALFM 90 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998653 3445566666655544444321 1222 11222333333
Q ss_pred HHHHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHh
Q 026853 81 SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (232)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~ 160 (232)
+.+........++||+.++|+.|++.|++++++||.+...+...+ +++++..+|+.+++++.....||+|..++.++++
T Consensus 91 ~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l-~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~ 169 (272)
T PRK13223 91 EAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLL-DQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKM 169 (272)
T ss_pred HHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHH-HHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHH
Confidence 333333334678999999999999999999999999998888888 8889999999999999888899999999999999
Q ss_pred cCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc--chhhhHhhhhccCcCcccc
Q 026853 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 161 ~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~~~~~~~~l~el~~~l~ 219 (232)
+|+.++++++|||+.+|+.+|+++|+.+++|..|...... ...++++++++.||...+.
T Consensus 170 ~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~~~~~ 230 (272)
T PRK13223 170 AGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALLPGCA 230 (272)
T ss_pred hCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHHHHHh
Confidence 9999999999999999999999999999999987544333 4579999999999986543
No 18
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=100.00 E-value=2.1e-33 Score=206.08 Aligned_cols=207 Identities=21% Similarity=0.311 Sum_probs=150.4
Q ss_pred cccEEEEeCCCcccccHHHHHHHHHHH---HHHcCCCCCcchhhhhcC-------CChHHHHHHHHHHcCCCccHHhHHH
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVLKTF---LVKYGKEWDGREKHKIVG-------KTPLEEAAIIVEDYGLPCAKHEFVN 77 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (232)
|+++|+||+||||+++...+..++..+ +.+++.+.+.+.+..... ..............+.....+....
T Consensus 1 ~~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T TIGR02253 1 MIKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEEYNPKLVAA 80 (221)
T ss_pred CceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhhcCHHHHHH
Confidence 378999999999999977766665544 455666555443322111 1000011111222222111222222
Q ss_pred HHHHHHHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHH
Q 026853 78 EVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA 157 (232)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~ 157 (232)
..............++||+.++|+.|+++|++++++||+....+...+ +++|+..+|+.++++++.+..||+|..|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~ 159 (221)
T TIGR02253 81 FVYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKL-ERLGVRDFFDAVITSEEEGVEKPHPKIFYAA 159 (221)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HhCChHHhccEEEEeccCCCCCCCHHHHHHH
Confidence 222333333345689999999999999999999999999988888888 8899999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEEeCCCCCcc---ccchhhhHhhhhccCcC
Q 026853 158 AKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT---HRYTAADEVINSLLDLR 215 (232)
Q Consensus 158 ~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~---~~~~~~~~~~~~l~el~ 215 (232)
++++|++++++++|||+. +|+.+|+++|+.++++..+.... .....++++++++.|++
T Consensus 160 ~~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el~ 221 (221)
T TIGR02253 160 LKRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLRELL 221 (221)
T ss_pred HHHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhhC
Confidence 999999999999999998 89999999999999999865433 12345788888888763
No 19
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=100.00 E-value=3.4e-32 Score=194.81 Aligned_cols=183 Identities=28% Similarity=0.458 Sum_probs=156.0
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHhh
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 86 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
.++++|+||+||||+|+...+..++..+++++|...+........|.+....+..++..++.....+++...+...+...
T Consensus 3 ~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (188)
T PRK10725 3 DRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVKSM 82 (188)
T ss_pred CcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999987666667777888877777777777766555555555444444333
Q ss_pred -hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCC
Q 026853 87 -LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (232)
Q Consensus 87 -~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (232)
.....++|+ .++|..|++. ++++|+||+....+...+ +++++..+|+.++++++....||+|+.|..++++++++|
T Consensus 83 ~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~ 159 (188)
T PRK10725 83 LLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALL-AHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQP 159 (188)
T ss_pred HhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHH-HhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCH
Confidence 345567886 5899999876 899999999999999899 999999999999999999999999999999999999999
Q ss_pred CcEEEEeCchhhhhhhhhcCCEEEEeC
Q 026853 166 SSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (232)
Q Consensus 166 ~~~~~vgD~~~Di~~a~~~G~~~i~v~ 192 (232)
+++++|||+.+|+++|+++|+++|+|.
T Consensus 160 ~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 160 TQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred HHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 999999999999999999999999885
No 20
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=100.00 E-value=1.4e-32 Score=199.32 Aligned_cols=200 Identities=24% Similarity=0.316 Sum_probs=159.3
Q ss_pred EEEeCCCcccccHHHHHHHHHHHHHHc-CCC-CCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHhhhcc
Q 026853 12 VILDLDGTLLNTDGMFSEVLKTFLVKY-GKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK 89 (232)
Q Consensus 12 i~fDlDGTL~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (232)
|+||+||||+|+...+..++..+++++ +.. .+.+.+....+...... ++..+.+.. ....+..........
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~ 73 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDI----MRIMGLPLE---MEEPFVRESYRLAGE 73 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHH----HHHcCCCHH---HHHHHHHHHHHhhcc
Confidence 689999999999999999999998874 653 34555666666554433 333443311 111111112222346
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEE
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 169 (232)
..++||+.++|++|++.|++++++||+....+...+ +++|+..+|+.++++++....||++..+..+++++++++++++
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLL-EALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 789999999999999999999999999999888888 8999999999999999888899999999999999999999999
Q ss_pred EEeCchhhhhhhhhcCCEEEEeCCCCCcccc--chhhhHhhhhccCcCcccc
Q 026853 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~~~~~~~~l~el~~~l~ 219 (232)
+|||+.+|+.+|+++|+.++++.+|...... ...++++++++.|+...+.
T Consensus 153 ~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~~~~ 204 (205)
T TIGR01454 153 MVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLALCR 204 (205)
T ss_pred EEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHHHhh
Confidence 9999999999999999999999987644433 4578999999998876543
No 21
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=5.1e-32 Score=202.43 Aligned_cols=204 Identities=20% Similarity=0.301 Sum_probs=162.8
Q ss_pred cccEEEEeCCCcccccHHHHHHHHHHHHHHcCCC-CCcchhhhhcCCChHHHHHHHHHHcCCC-ccHHhHHHHHHHHHHh
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD 85 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (232)
++++++||+||||+|+...+..++.++++++|.. .+.+.+....+..... +++.++.+ ...+++...+.+.+..
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~ 136 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRT----IVRRAGLSPWQQARLLQRVQRQLGD 136 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHH----HHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999975 4444455555554433 33444443 1223344445554444
Q ss_pred hhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCC
Q 026853 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (232)
.....+++||+.++|+.|+++|++++|+||+....+...+ +++|+..+|+.+++.+.. .+++..+..++++++++|
T Consensus 137 ~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L-~~~gl~~~F~~vi~~~~~---~~k~~~~~~~l~~~~~~p 212 (273)
T PRK13225 137 CLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFL-QRQGLRSLFSVVQAGTPI---LSKRRALSQLVAREGWQP 212 (273)
T ss_pred hcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhheEEEEecCCC---CCCHHHHHHHHHHhCcCh
Confidence 4456789999999999999999999999999999999999 999999999988877654 345789999999999999
Q ss_pred CcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccc-c-chhhhHhhhhccCcCcccc
Q 026853 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-R-YTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 166 ~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~-~-~~~~~~~~~~l~el~~~l~ 219 (232)
+++++|||+.+|+.+|+++|+.+++|..|..... . ...|+++++++.|+.+++.
T Consensus 213 ~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~~~~ 268 (273)
T PRK13225 213 AAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQAVT 268 (273)
T ss_pred hHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHHHHHH
Confidence 9999999999999999999999999998755443 2 4578999999999977653
No 22
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=100.00 E-value=9.5e-32 Score=197.81 Aligned_cols=204 Identities=20% Similarity=0.239 Sum_probs=155.3
Q ss_pred ccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCC-------------ChH----HHHHHHHHHcCCCcc
Q 026853 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGK-------------TPL----EEAAIIVEDYGLPCA 71 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~----~~~~~~~~~~~~~~~ 71 (232)
+|+|+||+||||+|+......++..++++++...+.......... ... ..+..+++..+....
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEAD 80 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCc
Confidence 589999999999999888888889888888876543322111110 000 112223333443221
Q ss_pred HHhHHHHHHHHHHhhh-ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCC
Q 026853 72 KHEFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS 150 (232)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~ 150 (232)
.+. +...+.... ....++||+.++|++|++. ++++++||+....+...+ +.+++..+|+.++++++.+..||+
T Consensus 81 ~~~----~~~~~~~~~~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~ 154 (224)
T TIGR02254 81 EAL----LNQKYLRFLEEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRL-RKSGLFPFFDDIFVSEDAGIQKPD 154 (224)
T ss_pred HHH----HHHHHHHHHhccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHH-HHCCcHhhcCEEEEcCccCCCCCC
Confidence 111 222222222 2467899999999999999 999999999999888888 889999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCCCcEEEEeCch-hhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCccc
Q 026853 151 PDIFLEAAKRL-NMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (232)
Q Consensus 151 ~~~~~~~~~~~-~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l 218 (232)
|.+|..+++++ +++|+++++|||+. +|+.+|+++|++++++.++.........+++++++++||.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el~~~~ 224 (224)
T TIGR02254 155 KEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEELYEIL 224 (224)
T ss_pred HHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHHHhhC
Confidence 99999999999 99999999999998 8999999999999999875443333456788899998887643
No 23
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=100.00 E-value=4.5e-31 Score=188.63 Aligned_cols=180 Identities=30% Similarity=0.497 Sum_probs=149.3
Q ss_pred ccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHh---HHHHHHHHHHh
Q 026853 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVYSMFSD 85 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 85 (232)
+++|+||+||||+|+...+..++..++++++...+........+......+..++..++...+..+ +...+...+.+
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYRE 80 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999899999999999987655445566777777777888777643333332 22333344443
Q ss_pred hh--ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCC
Q 026853 86 HL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (232)
Q Consensus 86 ~~--~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 163 (232)
.. ....++||+.++|+.|++.|++++++|++ ..+...+ +++++..+|+.+++++..+..||+|..+..+++++++
T Consensus 81 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l-~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~ 157 (185)
T TIGR02009 81 LLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRIL-AKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGV 157 (185)
T ss_pred HHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHH-HHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCC
Confidence 32 34789999999999999999999999998 5567777 8899999999999999999999999999999999999
Q ss_pred CCCcEEEEeCchhhhhhhhhcCCEEEEe
Q 026853 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (232)
Q Consensus 164 ~~~~~~~vgD~~~Di~~a~~~G~~~i~v 191 (232)
+++++++|||+.+|+.+|+++|+++++|
T Consensus 158 ~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 158 SPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 9999999999999999999999999875
No 24
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=100.00 E-value=4.2e-31 Score=188.79 Aligned_cols=179 Identities=30% Similarity=0.449 Sum_probs=148.8
Q ss_pred EEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHh---HHHHHHHHHHhhh
Q 026853 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVYSMFSDHL 87 (232)
Q Consensus 11 ~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 87 (232)
+|+||+||||+|+...+..++.++++.++.+.+........+.+....+..++...+...+.+. +...+...+.+..
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYVELL 80 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999988766666777787788888888887776544332 2222223333222
Q ss_pred ---ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCC
Q 026853 88 ---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (232)
Q Consensus 88 ---~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (232)
....++||+.++|+.|+++|++++++||+.. ....+ +++++..+|+.++++++....||+|+.|..++++++++
T Consensus 81 ~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~ 157 (185)
T TIGR01990 81 KELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVL-EKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVS 157 (185)
T ss_pred HhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHH-HhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCC
Confidence 2347899999999999999999999998753 34567 88999999999999999999999999999999999999
Q ss_pred CCcEEEEeCchhhhhhhhhcCCEEEEeC
Q 026853 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (232)
Q Consensus 165 ~~~~~~vgD~~~Di~~a~~~G~~~i~v~ 192 (232)
++++++|||+.+|+.+|+++|+++++|.
T Consensus 158 ~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 158 PSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred HHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 9999999999999999999999999873
No 25
>PRK09449 dUMP phosphatase; Provisional
Probab=99.98 E-value=2e-31 Score=195.96 Aligned_cols=202 Identities=21% Similarity=0.303 Sum_probs=147.1
Q ss_pred cccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhh--cCCC-----------hHHH----HHHHHHHcCCCc
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI--VGKT-----------PLEE----AAIIVEDYGLPC 70 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------~~~~----~~~~~~~~~~~~ 70 (232)
++|+|+||+||||+|.. ...++.++++++|...+.+..... .+.. .... +..+.+.++.+
T Consensus 2 ~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (224)
T PRK09449 2 KYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFTAEDFQDYQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNVT- 78 (224)
T ss_pred CccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCC-
Confidence 58999999999999854 256677888888876544433222 1110 0000 11122222221
Q ss_pred cHHhHHHHHHHHHHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCC
Q 026853 71 AKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS 150 (232)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~ 150 (232)
..+....+.+. ......++||+.++|+.|+ .|++++++||+....+...+ +++|+..+|+.++++++.+..||+
T Consensus 79 -~~~~~~~~~~~---~~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP~ 152 (224)
T PRK09449 79 -PGELNSAFLNA---MAEICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRL-ERTGLRDYFDLLVISEQVGVAKPD 152 (224)
T ss_pred -HHHHHHHHHHH---HhhcCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHH-HhCChHHHcCEEEEECccCCCCCC
Confidence 12222222211 1224678999999999999 57999999999999888888 889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCC-CcEEEEeCch-hhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCccc
Q 026853 151 PDIFLEAAKRLNMEP-SSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (232)
Q Consensus 151 ~~~~~~~~~~~~~~~-~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l 218 (232)
|.+|..+++++|+.+ +++++|||+. +|+.+|+++|+.++++.++.........+++++++++|+...+
T Consensus 153 p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el~~~l 222 (224)
T PRK09449 153 VAIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSELEQLL 222 (224)
T ss_pred HHHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHHHHHH
Confidence 999999999999854 7999999998 7999999999999999863222222335788999999887654
No 26
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.98 E-value=3.3e-31 Score=212.87 Aligned_cols=213 Identities=15% Similarity=0.192 Sum_probs=167.7
Q ss_pred CccccccccEEEEeCCCcccccHHHHHHHHHHHHHHcC------CCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhH
Q 026853 2 AQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYG------KEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEF 75 (232)
Q Consensus 2 ~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (232)
++...+|+++|+||+||||+|+...+..++.+++++++ ...+.+.+....|.+....+..+....+.. ..++.
T Consensus 234 ~~~~~~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~-~~~~~ 312 (459)
T PRK06698 234 SKGENEMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLE-IREQT 312 (459)
T ss_pred ccchHHhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchh-HHHHH
Confidence 33344678999999999999999999999999988874 222345566778888777777766544322 11223
Q ss_pred HHHHHHHHHhhh--ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHH
Q 026853 76 VNEVYSMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153 (232)
Q Consensus 76 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~ 153 (232)
...+.+.+.+.. ...+++||+.++|++|+++|++++|+||+....+...+ +++++..+|+.++++++.. .+|+|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l-~~~~l~~~f~~i~~~d~v~-~~~kP~~ 390 (459)
T PRK06698 313 DAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIV-SYYDLDQWVTETFSIEQIN-SLNKSDL 390 (459)
T ss_pred HHHHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHCCcHhhcceeEecCCCC-CCCCcHH
Confidence 333333333322 24688999999999999999999999999999999999 8999999999999988764 4678889
Q ss_pred HHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 154 ~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
+..++++++ +++|++|||+.+|+.+|+++|+.++++.++.........+++++++++|+...+.
T Consensus 391 ~~~al~~l~--~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el~~~l~ 454 (459)
T PRK06698 391 VKSILNKYD--IKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLELKGILS 454 (459)
T ss_pred HHHHHHhcC--cceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHHHHHHH
Confidence 999998875 6899999999999999999999999999876544445578999999999877654
No 27
>PLN02811 hydrolase
Probab=99.97 E-value=2.5e-30 Score=189.20 Aligned_cols=203 Identities=40% Similarity=0.670 Sum_probs=164.6
Q ss_pred CCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCc--cHHhHHHHHHHHHHhhhccCCCC
Q 026853 16 LDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSDHLCKVKAL 93 (232)
Q Consensus 16 lDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 93 (232)
+||||+|+...+..++..+++++++..+.+......|.+....+..+.+..+.+. ..+++................++
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTSDLM 80 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 6999999999999999999999998776666667788877777777777766542 23344443333444434567889
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeeccc--ccCCCCCCHHHHHHHHHhcC---CCCCcE
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--EVRTGKPSPDIFLEAAKRLN---MEPSSS 168 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~--~~~~~kp~~~~~~~~~~~~~---~~~~~~ 168 (232)
||+.++|+.|++.|++++|+||.........+.+..++..+|+.+++++ ++...||+|+.|..++++++ +.+++|
T Consensus 81 ~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~ 160 (220)
T PLN02811 81 PGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKV 160 (220)
T ss_pred ccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCccce
Confidence 9999999999999999999999987655544425557888999999999 88889999999999999996 999999
Q ss_pred EEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCccc
Q 026853 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (232)
Q Consensus 169 ~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l 218 (232)
++|||+..|+.+|+++|+.+|++.++.........++++++++.|+...=
T Consensus 161 v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~~~ 210 (220)
T PLN02811 161 LVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKPEE 210 (220)
T ss_pred EEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCHHH
Confidence 99999999999999999999999886544334557899999999875543
No 28
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.97 E-value=4.1e-30 Score=194.06 Aligned_cols=208 Identities=26% Similarity=0.396 Sum_probs=152.5
Q ss_pred ccccEEEEeCCCcccccH-HHHHHHHHHHHHHcCCC-C--Ccchhh--hhcCCChHHHHHHHHHHcCCC--------ccH
Q 026853 7 KLMSCVILDLDGTLLNTD-GMFSEVLKTFLVKYGKE-W--DGREKH--KIVGKTPLEEAAIIVEDYGLP--------CAK 72 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~-~~~~~~~~~~~~~~~~~-~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~ 72 (232)
..+++|+||+||||+|+. ..+..++..+++++|.+ . +.+.+. ...+.+....... +...+.. ...
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 116 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWY-FNENGWPTSTIEKAPKDE 116 (286)
T ss_pred cCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHH-HHHcCCCccccccCCccc
Confidence 457999999999999999 99899999999999983 2 222221 1144443333322 2222221 011
Q ss_pred ---HhHHH----HHHHHHHhhhc--cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc---cccceeec
Q 026853 73 ---HEFVN----EVYSMFSDHLC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN---ESFSVIVG 140 (232)
Q Consensus 73 ---~~~~~----~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~---~~~~~~~~ 140 (232)
++... .....+.+.+. .+.++||+.++|+.|++.|++++|+||.....+...+ +..+.. ..|+.+ +
T Consensus 117 e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l-~~~~~~~~~~~~~~v-~ 194 (286)
T PLN02779 117 EERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIV-NTLLGPERAQGLDVF-A 194 (286)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhccccccCceEEE-e
Confidence 11111 22233333332 2579999999999999999999999999998888777 555333 334444 7
Q ss_pred ccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCcc
Q 026853 141 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (232)
Q Consensus 141 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~ 217 (232)
++++...||+|.+|..+++++|++|+++++|||+.+|+.+|+++|+.+|+|..|.........++++++++.++...
T Consensus 195 ~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~~ 271 (286)
T PLN02779 195 GDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPLE 271 (286)
T ss_pred ccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcchh
Confidence 77788899999999999999999999999999999999999999999999998765544446789999999988654
No 29
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.97 E-value=2.6e-30 Score=186.42 Aligned_cols=180 Identities=18% Similarity=0.323 Sum_probs=134.7
Q ss_pred ccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCc---------chhhhhcCC--C----hHHHHHHHHHHcCCCccHH
Q 026853 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG---------REKHKIVGK--T----PLEEAAIIVEDYGLPCAKH 73 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~ 73 (232)
+|+|+||+||||+|+... ..++.+.+...+..... .......+. . ....+..+++.++......
T Consensus 1 ik~viFD~dgTLiD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSV-VERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGRLGLEDDES 79 (198)
T ss_pred CcEEEEeCCCcCccHHHH-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHcCCCCCHH
Confidence 478999999999998764 33444333222111100 000011111 1 1234455666676653322
Q ss_pred hHHHHHHHHHHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHH
Q 026853 74 EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153 (232)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~ 153 (232)
.... +.+.+....++||+.++|++|+++|++++++||+....+...+ +++|+..+|+.++++++++..||+|.+
T Consensus 80 -~~~~----~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~gl~~~fd~i~~s~~~~~~KP~~~~ 153 (198)
T TIGR01428 80 -AADR----LAEAYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLV-KHAGLDDPFDAVLSADAVRAYKPAPQV 153 (198)
T ss_pred -HHHH----HHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHCCChhhhheeEehhhcCCCCCCHHH
Confidence 1222 2233345678999999999999999999999999999999888 889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCC
Q 026853 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 154 ~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~ 195 (232)
|..+++++|++|+++++|||+.+|+.+|+++|+.+++++++.
T Consensus 154 ~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 154 YQLALEALGVPPDEVLFVASNPWDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred HHHHHHHhCCChhhEEEEeCCHHHHHHHHHCCCcEEEecCCC
Confidence 999999999999999999999999999999999999999843
No 30
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.97 E-value=2.5e-30 Score=191.04 Aligned_cols=205 Identities=16% Similarity=0.176 Sum_probs=146.6
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCC------C---cchhhhhcCC-----------ChHHHHHHHHHHc
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW------D---GREKHKIVGK-----------TPLEEAAIIVEDY 66 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~-----------~~~~~~~~~~~~~ 66 (232)
.++|+|+||+||||+|+...+..++..+++.++... . ...+....+. .....+..+++.+
T Consensus 8 ~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (238)
T PRK10748 8 GRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLDA 87 (238)
T ss_pred CCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHHc
Confidence 467999999999999998888887777665442110 0 0111110000 0112344556666
Q ss_pred CCCccHHh-HHHHHHHHHHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccC
Q 026853 67 GLPCAKHE-FVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (232)
Q Consensus 67 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 145 (232)
+.+....+ ........+........++||+.++|++|++. ++++++||+... + +..|+..+|+.++++++.+
T Consensus 88 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~-~~~gl~~~fd~i~~~~~~~ 160 (238)
T PRK10748 88 GLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----P-ELFGLGDYFEFVLRAGPHG 160 (238)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----H-HHCCcHHhhceeEecccCC
Confidence 66522211 11122222333234578999999999999876 999999998765 3 6679999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEEeCCCCCcc----ccchhhhHhhhhccCcCccc
Q 026853 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT----HRYTAADEVINSLLDLRPEK 218 (232)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~----~~~~~~~~~~~~l~el~~~l 218 (232)
..||+|.+|..+++++|++|+++++|||+. .|+.+|+++|+.+++++.+.... .....++.++.+++||.+.+
T Consensus 161 ~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el~~~~ 238 (238)
T PRK10748 161 RSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASLTSLI 238 (238)
T ss_pred cCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHHHhhC
Confidence 999999999999999999999999999995 99999999999999999843221 11245788889988886653
No 31
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.97 E-value=3.4e-30 Score=182.54 Aligned_cols=175 Identities=31% Similarity=0.531 Sum_probs=147.2
Q ss_pred EEEeCCCcccccHHHHHHHHHH-HHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHhhhccC
Q 026853 12 VILDLDGTLLNTDGMFSEVLKT-FLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV 90 (232)
Q Consensus 12 i~fDlDGTL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (232)
|+||+||||+++...+.+++.. +.+.++...+...++...+......+..++..++.. .....+.+.+. ......
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~ 76 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGID--PEEIQELFREY--NLESKL 76 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHGGE
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchh--HHHHHHHhhhh--hhhhcc
Confidence 7899999999998877788876 477888766666666777777777777777766433 22233333332 112567
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
.++||+.++|+.|++.|++++++||.....+...+ +++|+..+|+.++++++.+..||++..|+.++++++++|+++++
T Consensus 77 ~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l-~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~ 155 (176)
T PF13419_consen 77 QPYPGVRELLERLKAKGIPLVIVSNGSRERIERVL-ERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILF 155 (176)
T ss_dssp EESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHH-HHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEE
T ss_pred chhhhhhhhhhhcccccceeEEeecCCcccccccc-cccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEE
Confidence 89999999999999999999999999999999899 88999999999999999999999999999999999999999999
Q ss_pred EeCchhhhhhhhhcCCEEEEe
Q 026853 171 IEDSVIGVVAGKAAGMEVVAV 191 (232)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v 191 (232)
|||+..|+.+|+++|+.+|+|
T Consensus 156 vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 156 VGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EESSHHHHHHHHHTTSEEEEE
T ss_pred EeCCHHHHHHHHHcCCeEEeC
Confidence 999999999999999999986
No 32
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.97 E-value=1.8e-30 Score=189.86 Aligned_cols=108 Identities=15% Similarity=0.230 Sum_probs=100.0
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCc
Q 026853 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (232)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (232)
....++||+.++|+.|+++|++++++||+....+...+ +++|+..+|+.++++++.+..||+|+.|..+++++|++|++
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKL-EHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHH-HHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence 45789999999999999999999999999999888888 88999999999999999999999999999999999999999
Q ss_pred EEEEeCchhhhhhhhhcCCEE-EEeCCCCC
Q 026853 168 SLVIEDSVIGVVAGKAAGMEV-VAVPSLPK 196 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G~~~-i~v~~~~~ 196 (232)
|++|||+.+|+.+|+++|+.+ ++|..+..
T Consensus 169 ~l~igDs~~di~aA~~aG~~~~~~v~~~~~ 198 (224)
T PRK14988 169 TLFIDDSEPILDAAAQFGIRYCLGVTNPDS 198 (224)
T ss_pred EEEEcCCHHHHHHHHHcCCeEEEEEeCCCC
Confidence 999999999999999999985 66766443
No 33
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.97 E-value=2.1e-29 Score=217.68 Aligned_cols=211 Identities=24% Similarity=0.349 Sum_probs=173.5
Q ss_pred cccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCC-ccHHhHHHHHHHHHH
Q 026853 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFS 84 (232)
Q Consensus 6 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (232)
.+++++|+||+||||+|+...+..++.++++++|.+.+.+.+....+......+..+...++.. ...++....+.+.+.
T Consensus 72 ~~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (1057)
T PLN02919 72 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRFFEIYL 151 (1057)
T ss_pred CCCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999887777777778877777766666655543 233333334443333
Q ss_pred hhh---ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc-cccceeecccccCCCCCCHHHHHHHHHh
Q 026853 85 DHL---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (232)
Q Consensus 85 ~~~---~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~kp~~~~~~~~~~~ 160 (232)
+.+ ....++||+.++|++|+++|++++|+||.....+...+ +++++. .+|+.++++++....||+|++|..++++
T Consensus 152 ~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L-~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~ 230 (1057)
T PLN02919 152 EKYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANL-AAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKI 230 (1057)
T ss_pred HHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHcCCChhHCCEEEECcccccCCCCHHHHHHHHHH
Confidence 322 12347999999999999999999999999999998888 889996 7899999999999999999999999999
Q ss_pred cCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc-chhhhHhhhhccCcCcc
Q 026853 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDLRPE 217 (232)
Q Consensus 161 ~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~~~~~~~~l~el~~~ 217 (232)
+++.|+++++|||+.+|+++|+++|+.+|+|.++....+. ...++++++++.|+...
T Consensus 231 lgv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~~~ 288 (1057)
T PLN02919 231 LGVPTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNISLS 288 (1057)
T ss_pred cCcCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCCHH
Confidence 9999999999999999999999999999999997544333 46778899999998433
No 34
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.97 E-value=3.9e-29 Score=181.05 Aligned_cols=178 Identities=28% Similarity=0.352 Sum_probs=136.1
Q ss_pred cEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhh------------------cCCChHHH----HHHHHHHcC
Q 026853 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI------------------VGKTPLEE----AAIIVEDYG 67 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~----~~~~~~~~~ 67 (232)
|+|+||+||||+|+...+..++..+++++|.+.+....... .+.+.... ....+...+
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999888889999999999987654332110 13343322 233333344
Q ss_pred CCccHHhHHHHHHHHHHhhh--ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccC
Q 026853 68 LPCAKHEFVNEVYSMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (232)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 145 (232)
.. ...++...+...+.... ....++||+.++|+.|++.|++++|+||.... ....+ +++++..+|+.++++++.+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l-~~~~l~~~fd~i~~s~~~~ 157 (203)
T TIGR02252 81 VP-DPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLL-EALGLLEYFDFVVTSYEVG 157 (203)
T ss_pred CC-CchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHH-HHCCcHHhcceEEeecccC
Confidence 21 22223323333322221 23578999999999999999999999998765 46677 8889999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEE
Q 026853 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVA 190 (232)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~ 190 (232)
..||+|..|..+++++|++|+++++|||+. +|+.+|+++|+.+|+
T Consensus 158 ~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 158 AEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred CCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 999999999999999999999999999998 899999999999875
No 35
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.96 E-value=3.8e-28 Score=173.17 Aligned_cols=212 Identities=38% Similarity=0.593 Sum_probs=187.6
Q ss_pred ccccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHH
Q 026853 5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS 84 (232)
Q Consensus 5 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
....+.+++||+||||+++...+.+++..++.++|...++.......|....+..+.++..+..+.+.+++.....+...
T Consensus 6 ~~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~ 85 (222)
T KOG2914|consen 6 LSLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILD 85 (222)
T ss_pred cccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999988888888999999999999999888888899999999888888
Q ss_pred hhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeec--ccccCCCCCCHHHHHHHHHhcC
Q 026853 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG--SDEVRTGKPSPDIFLEAAKRLN 162 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~--~~~~~~~kp~~~~~~~~~~~~~ 162 (232)
+.+....+.||+.+++..|+..|++++++|+.........+..+.++...|+.++. ..++..+||+|.+|..+++++|
T Consensus 86 ~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~ 165 (222)
T KOG2914|consen 86 RLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLG 165 (222)
T ss_pred HhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcC
Confidence 88888999999999999999999999999999888888888333337777888777 6678889999999999999999
Q ss_pred CCC-CcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCc
Q 026853 163 MEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (232)
Q Consensus 163 ~~~-~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~ 216 (232)
..+ +.|++|+|+++.+.+|+.+|+++|+++...-.......++.+++++.++..
T Consensus 166 ~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (222)
T KOG2914|consen 166 VPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLILESLEDFKP 220 (222)
T ss_pred CCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceecccccccCc
Confidence 999 999999999999999999999999999955555556778888888777643
No 36
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.96 E-value=3.1e-28 Score=179.73 Aligned_cols=129 Identities=27% Similarity=0.358 Sum_probs=115.1
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcE
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (232)
..+++|++.++|+.++.. ++++++||+....+...+ .++|+..+||.++++++.+..||+|++|+.+++++|++|+++
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l-~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKL-RQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHH-HHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 478999999999999999 999999999998899899 889999999999999999999999999999999999999999
Q ss_pred EEEeCch-hhhhhhhhcCCEEEEeCCCCCcc-ccchhhhHhhhhccCcCcccc
Q 026853 169 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT-HRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 169 ~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~-~~~~~~~~~~~~l~el~~~l~ 219 (232)
+||||+. ||+.+|+++||.++|++.+.... .....+++.+.++.++.+.+.
T Consensus 175 l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l~~~~~ 227 (229)
T COG1011 175 LFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAELLDLLE 227 (229)
T ss_pred EEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHHHHHHh
Confidence 9999999 88899999999999999854432 112567888888888876654
No 37
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.96 E-value=3.3e-27 Score=169.94 Aligned_cols=173 Identities=16% Similarity=0.231 Sum_probs=132.3
Q ss_pred cEEEEeCCCcccccHHHHHHHHHHHHHHcC-CCCCcchhhhhcCCChH--------HHHHHHHHHcC-----CCccHHhH
Q 026853 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYG-KEWDGREKHKIVGKTPL--------EEAAIIVEDYG-----LPCAKHEF 75 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~ 75 (232)
++|+||+||||+|+...+..++..++++++ ...+.+.+....+.+.. ..+...+.... .....+.+
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAV 80 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHH
Confidence 468999999999999999999999999997 55565666666554321 11122222111 12233444
Q ss_pred HHHHHHHHHhhh----------ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccC
Q 026853 76 VNEVYSMFSDHL----------CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (232)
Q Consensus 76 ~~~~~~~~~~~~----------~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 145 (232)
...+.+.+.... ....+.++..++|+.|++.|++++|+||.....+...+ +++|+..+|+.++++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~ 159 (197)
T TIGR01548 81 TAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFL-TTHGLEILFPVQIWMEDCP 159 (197)
T ss_pred HHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHH-HHcCchhhCCEEEeecCCC
Confidence 444544444311 12234556799999999999999999999999999999 9999999999999998877
Q ss_pred CCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhc
Q 026853 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (232)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~ 184 (232)
. ||+|+.+..++++++++++++++|||+.+|+.+|+++
T Consensus 160 ~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 160 P-KPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred C-CcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 6 9999999999999999999999999999999999874
No 38
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.95 E-value=4e-27 Score=167.96 Aligned_cols=175 Identities=30% Similarity=0.436 Sum_probs=123.9
Q ss_pred EEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHH------HHHHHH
Q 026853 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNE------VYSMFS 84 (232)
Q Consensus 11 ~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 84 (232)
+++||+||||+++...+..... ................ .........+...++........... ....+.
T Consensus 1 ~vlFDlDgtLv~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (183)
T TIGR01509 1 AILFDLDGVLVDTSSAIEKLVN---REEFPLVPDELGVSAV-GKLELALRRWKEKYGRTMSAEDFYLLYENADIKQLFYD 76 (183)
T ss_pred CeeeccCCceechHHHHHHHHH---HHhCCCCcHHHHHHHH-HHHHHHhhccccccCCCCCcHHHHHHHhHHHHHHHHHH
Confidence 4899999999999776554211 1222111111111111 11222233333334444333332222 222233
Q ss_pred hhhcc--CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcC
Q 026853 85 DHLCK--VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (232)
Q Consensus 85 ~~~~~--~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~ 162 (232)
..... .+++||+.++|+.|++.|++++++||+.... ...+ .++|+..+|+.++++++.+..||+|..|+.++++++
T Consensus 77 ~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~ 154 (183)
T TIGR01509 77 AILDEEKLKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLV-QELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLG 154 (183)
T ss_pred HHHhccCCccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHH-HhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcC
Confidence 32233 6889999999999999999999999999887 5555 568999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCchhhhhhhhhcCCEEEEe
Q 026853 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (232)
Q Consensus 163 ~~~~~~~~vgD~~~Di~~a~~~G~~~i~v 191 (232)
++|+++++|||+..|+.+|+++|+.+|+|
T Consensus 155 ~~~~~~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 155 LKPEECLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred CCcceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence 99999999999999999999999999875
No 39
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.95 E-value=3e-27 Score=172.17 Aligned_cols=179 Identities=22% Similarity=0.262 Sum_probs=123.0
Q ss_pred ccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHH--------------HHHHHHHHcCCCccHHh
Q 026853 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLE--------------EAAIIVEDYGLPCAKHE 74 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 74 (232)
+|+|+||+||||+++.. ....+.......+.+ ..+......+..... ....+.+.++.......
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK-DFIVTVNITGPDFNPWARTFERGELTAEAFDGLFRHEYGLRLGHDV 79 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc-cHHHHHHhcCCCCChHHHHHHcCCCCHHHHHHHHHHHhccccCCCc
Confidence 57999999999999966 555555544444432 111122222222111 11122222222111000
Q ss_pred HHHHHHHHHHhhh-ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHH--HHHHHhhhcCCccccceeecccccCCCCCCH
Q 026853 75 FVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRAT--IESKISYQHGWNESFSVIVGSDEVRTGKPSP 151 (232)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~--~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~ 151 (232)
....+ +.... ....++||+.++|+.|+++|++++++||+.... ....+ ...++..+|+.++++++.+..||+|
T Consensus 80 ~~~~~---~~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~-~~~~l~~~fd~v~~s~~~~~~KP~p 155 (211)
T TIGR02247 80 RIAPV---FPLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEAL-LPGDIMALFDAVVESCLEGLRKPDP 155 (211)
T ss_pred Cchhh---HHHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHh-hhhhhHhhCCEEEEeeecCCCCCCH
Confidence 01111 11111 246789999999999999999999999986543 22233 4457888999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
.+|..+++++|++|++++||||+..|+.+|+++|+.++++.+
T Consensus 156 ~~~~~~~~~~g~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 156 RIYQLMLERLGVAPEECVFLDDLGSNLKPAAALGITTIKVSD 197 (211)
T ss_pred HHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 999999999999999999999999999999999999999987
No 40
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.95 E-value=4.4e-27 Score=169.51 Aligned_cols=177 Identities=15% Similarity=0.174 Sum_probs=130.2
Q ss_pred cEEEEeCCCcccccHHHHH-HHHHH--------HHHHcCCCCCcchhhhhcC-CChHHHHHHHHHHcCCCccHHhHHHHH
Q 026853 10 SCVILDLDGTLLNTDGMFS-EVLKT--------FLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYGLPCAKHEFVNEV 79 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (232)
.+|+||+||||++.+.... ..+.. +...+. ..........| ....+....+.+.++.+.+.+.+...+
T Consensus 1 ~~viFDldgvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (199)
T PRK09456 1 MLYIFDLGNVIVDIDFNRVLGVWSDLSRVPLATLKKRFT--MGEAFHQHERGEISDEAFAEALCHEMALSLSYEQFAHGW 78 (199)
T ss_pred CEEEEeCCCccccCcHHHHHHHHHHhcCCCHHHHHHHHh--cCcHHHHHhcCCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3799999999999753211 11111 111111 01111122233 445566677778777765544444333
Q ss_pred HHHHHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHH
Q 026853 80 YSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 159 (232)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~ 159 (232)
.+.+ ..++||+.++|+.|++.|++++|+||+........+....++..+|+.++++++.+..||+|+.|+.+++
T Consensus 79 ~~~~------~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 152 (199)
T PRK09456 79 QAVF------VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQ 152 (199)
T ss_pred HHHH------hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHH
Confidence 3222 3589999999999999999999999998887665552334788899999999999999999999999999
Q ss_pred hcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCC
Q 026853 160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 160 ~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (232)
++|++|+++++|||+..|+.+|+++|+.++++..+
T Consensus 153 ~~~~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 153 AEGFSAADAVFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred HcCCChhHeEEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 99999999999999999999999999999999874
No 41
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.95 E-value=5.6e-27 Score=168.90 Aligned_cols=189 Identities=14% Similarity=0.164 Sum_probs=130.3
Q ss_pred cccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHh-h
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD-H 86 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 86 (232)
|+|+|+||+||||+|+. .++..+++++|++. +.+....+......... .++. +.......+..+... .
T Consensus 1 m~k~viFDlDGTLiD~~----~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~ 69 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQ----SGLPYFAQKYNIPT--DHILKMIQDERFRDPGE---LFGC--DQELAKKLIEKYNNSDF 69 (197)
T ss_pred CCcEEEEecCCceEchh----hccHHHHHhcCCCH--HHHHHHHhHhhhcCHHH---Hhcc--cHHHHHHHhhhhhHHHH
Confidence 47999999999999953 34567777888643 34434444322222211 2221 122222222222212 2
Q ss_pred hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc----ccceeecccccCCCCCCHHHHHHHHHhcC
Q 026853 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE----SFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (232)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~----~~~~~~~~~~~~~~kp~~~~~~~~~~~~~ 162 (232)
.....++||+.++|+.|++. ++++++||.........+ +.+++.. +|+.+++++. .+|+|+.+..+++++|
T Consensus 70 ~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~-~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~~~ 144 (197)
T PHA02597 70 IRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLN-RQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEKYG 144 (197)
T ss_pred HHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHH-hhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHHhC
Confidence 24567999999999999987 578888987666554455 6666654 4566666665 3677899999999999
Q ss_pred CCCCcEEEEeCchhhhhhhhhc--CCEEEEeCCCCCccccchhhhHhhhhccCcCc
Q 026853 163 MEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (232)
Q Consensus 163 ~~~~~~~~vgD~~~Di~~a~~~--G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~ 216 (232)
+++++||||+.+|+.+|+++ |++++++++++. .....+++.+.++.|+..
T Consensus 145 --~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~~~ 196 (197)
T PHA02597 145 --DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDIEN 196 (197)
T ss_pred --CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHHhc
Confidence 88899999999999999999 999999999754 333466699999988753
No 42
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.95 E-value=8.9e-27 Score=166.05 Aligned_cols=168 Identities=22% Similarity=0.270 Sum_probs=123.8
Q ss_pred cEEEEeCCCcccccHHHHHHHHHHHHH-----HcCCCCCcch-hhh----hcCCChHHHHHHHHHHcCCCccHHhHHHHH
Q 026853 10 SCVILDLDGTLLNTDGMFSEVLKTFLV-----KYGKEWDGRE-KHK----IVGKTPLEEAAIIVEDYGLPCAKHEFVNEV 79 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (232)
.+|+||+||||+|+...+..++.+.+. +++++..... +.. ..+.. ...++..... ..+. +
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~~----~~~~~~~~~~--~~~~----~ 70 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGTT----LAGLMILHEI--DADE----Y 70 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHchH----HHHHHHhhCC--CHHH----H
Confidence 369999999999997666666655443 5565332211 110 11211 1112222222 2222 2
Q ss_pred HHHHHhh--hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCC----CCCCHHH
Q 026853 80 YSMFSDH--LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT----GKPSPDI 153 (232)
Q Consensus 80 ~~~~~~~--~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~----~kp~~~~ 153 (232)
.+.+.+. .....+++|+.++|++|+ .+++++||+....+...+ +.+|+..+|+.++++++.+. .||+|..
T Consensus 71 ~~~~~~~~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l-~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~ 146 (184)
T TIGR01993 71 LRYVHGRLPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRAL-NRLGIEDCFDGIFCFDTANPDYLLPKPSPQA 146 (184)
T ss_pred HHHHhccCCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHH-HHcCcHhhhCeEEEeecccCccCCCCCCHHH
Confidence 2233321 235678999999999997 479999999999999999 88999999999999988876 5999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEe
Q 026853 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (232)
Q Consensus 154 ~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v 191 (232)
|..+++++|++|+++++|||+..|+.+|+++|+++++|
T Consensus 147 ~~~~~~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 147 YEKALREAGVDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred HHHHHHHhCCCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 99999999999999999999999999999999999875
No 43
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.94 E-value=8.4e-26 Score=165.52 Aligned_cols=192 Identities=19% Similarity=0.218 Sum_probs=129.2
Q ss_pred cccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchh-hh-hcC-CChHHHHHHHHHHcCCCccHHhHHHHHHHH
Q 026853 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HK-IVG-KTPLEEAAIIVEDYGLPCAKHEFVNEVYSM 82 (232)
Q Consensus 6 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (232)
+.++++++||+||||++++. +..+++.++........ .. ..+ ..........+..+. ... .+ .
T Consensus 11 ~~~~k~iiFD~DGTL~~~~~-----~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~-~~-------~ 76 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAET-----IDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLK-GLP-VE-------L 76 (219)
T ss_pred hccCCEEEEeCcccCCCchH-----HHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC-CCC-HH-------H
Confidence 45789999999999999742 34555666653222211 11 111 122222222222221 111 11 1
Q ss_pred HHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeec-------cc---ccCCCCCCHH
Q 026853 83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG-------SD---EVRTGKPSPD 152 (232)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~-------~~---~~~~~kp~~~ 152 (232)
+.+.....+++||+.++|+.|+++|++++|+|++....+...+ +.+++..+|+..+. +. ....++|++.
T Consensus 77 ~~~~~~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 155 (219)
T TIGR00338 77 LKEVRENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVK-DKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGK 155 (219)
T ss_pred HHHHHhcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceEeeEEEEECCEEEEEecCcccCCcccHH
Confidence 2222345679999999999999999999999999999888888 88898887754321 11 1223567899
Q ss_pred HHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhh--hccCcCc
Q 026853 153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLRP 216 (232)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~l~el~~ 216 (232)
.++.++++++++++++++|||+.+|+.+|+.+|+.++ ++. .+.....|++++. ++.+++.
T Consensus 156 ~~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~-~~~---~~~~~~~a~~~i~~~~~~~~~~ 217 (219)
T TIGR00338 156 TLLILLRKEGISPENTVAVGDGANDLSMIKAAGLGIA-FNA---KPKLQQKADICINKKDLTDILP 217 (219)
T ss_pred HHHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEE-eCC---CHHHHHhchhccCCCCHHHHHh
Confidence 9999999999999999999999999999999999854 432 3444567888866 4455544
No 44
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.94 E-value=2.1e-25 Score=159.61 Aligned_cols=187 Identities=26% Similarity=0.303 Sum_probs=138.7
Q ss_pred cccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhh------------------hhcC-CChHHHHHHHHH-H
Q 026853 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH------------------KIVG-KTPLEEAAIIVE-D 65 (232)
Q Consensus 6 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~-~~~~~~~~~~~~-~ 65 (232)
.+++|+|+||++|||+...+...+.+..+.+.+|+..+..... ...+ .+...++..+.. .
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~ 83 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVEST 83 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHH
Confidence 4679999999999999876666777888888888774443321 1112 244455553333 3
Q ss_pred cCCCcc--HHhHHHHHH-HHHHhh-hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecc
Q 026853 66 YGLPCA--KHEFVNEVY-SMFSDH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 141 (232)
Q Consensus 66 ~~~~~~--~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~ 141 (232)
++.... .++....+. ..+... .......+++.++++.||+.|..++++||.+...- ..+ ..+++..+||.++.|
T Consensus 84 f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l-~~~~l~~~fD~vv~S 161 (237)
T KOG3085|consen 84 FGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LLL-LPLGLSAYFDFVVES 161 (237)
T ss_pred hccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHh-hccCHHHhhhhhhhh
Confidence 322211 111111111 111111 12456677888999999999999999999987754 455 778999999999999
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEEeCCC
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~ 194 (232)
+..+..||+|.+|+.+++++++.|++|++|||+. ||+++|+++||.++.|.+.
T Consensus 162 ~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~ 215 (237)
T KOG3085|consen 162 CEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNS 215 (237)
T ss_pred hhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEccc
Confidence 9999999999999999999999999999999999 9999999999999999873
No 45
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.93 E-value=6.3e-25 Score=152.18 Aligned_cols=154 Identities=25% Similarity=0.407 Sum_probs=119.5
Q ss_pred EEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHhhhccC
Q 026853 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV 90 (232)
Q Consensus 11 ~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (232)
+|+||+||||+|+...+..++..++++++. +.+.+....+...... ..... .+.+. .......
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~-~~~~~-------------~~~~~-~~~~~~~ 63 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE--DFQALKALRGLAEELL-YRIAT-------------SFEEL-LGYDAEE 63 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcc--cHHHHHHHHccChHHH-HHHHH-------------HHHHH-hCcchhh
Confidence 489999999999988889999999998874 3233333333321111 11111 11111 1122344
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
...+|+.++|+.|+++|++++++||+....+...+ +++ +..+|+.++++++.. .||+|..+..+++++++++ ++++
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~-~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLL-RKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHH-HHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEE
Confidence 56799999999999999999999999999998888 666 788899999988887 9999999999999999999 9999
Q ss_pred EeCchhhhhhhhhcC
Q 026853 171 IEDSVIGVVAGKAAG 185 (232)
Q Consensus 171 vgD~~~Di~~a~~~G 185 (232)
|||+..|+.+|+++|
T Consensus 140 iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 140 VGDNLNDIEGARNAG 154 (154)
T ss_pred EeCCHHHHHHHHHcc
Confidence 999999999999987
No 46
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.93 E-value=1.9e-25 Score=158.06 Aligned_cols=161 Identities=17% Similarity=0.266 Sum_probs=121.7
Q ss_pred EEEEeCCCcccccHHHHHHHHHHHHHHcCCC--------CCcchhhhhcC--CChHH----HHHHHHHHcCCCccHHhHH
Q 026853 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE--------WDGREKHKIVG--KTPLE----EAAIIVEDYGLPCAKHEFV 76 (232)
Q Consensus 11 ~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (232)
+|+||+||||+|+...+..++..++.+.+.. ..........+ ..... .+..+.+.++.....+ .
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~- 78 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDAEPK-Y- 78 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCCCHH-H-
Confidence 4899999999999888888887777664321 01111112222 11112 4566667777664332 1
Q ss_pred HHHHHHHHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHH
Q 026853 77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE 156 (232)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~ 156 (232)
.+.+.+.+....++||+.++|+ +++|+||+....+...+ +++++..+|+.++++++++..||+|+.|..
T Consensus 79 ---~~~~~~~~~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~ 147 (175)
T TIGR01493 79 ---GERLRDAYKNLPPWPDSAAALA-------RVAILSNASHWAFDQFA-QQAGLPWYFDRAFSVDTVRAYKPDPVVYEL 147 (175)
T ss_pred ---HHHHHHHHhcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHH-HHCCCHHHHhhhccHhhcCCCCCCHHHHHH
Confidence 2223333345679999999998 37899999999999888 889999999999999998999999999999
Q ss_pred HHHhcCCCCCcEEEEeCchhhhhhhhhc
Q 026853 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (232)
Q Consensus 157 ~~~~~~~~~~~~~~vgD~~~Di~~a~~~ 184 (232)
+++++|++|++|++|||+..|+.+|+++
T Consensus 148 ~~~~~~~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 148 VFDTVGLPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHHHHCCCHHHeEeEecChhhHHHHhcC
Confidence 9999999999999999999999999864
No 47
>PLN02954 phosphoserine phosphatase
Probab=99.92 E-value=2.3e-24 Score=158.47 Aligned_cols=196 Identities=17% Similarity=0.156 Sum_probs=131.9
Q ss_pred cccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchh-hhhcC--CChHHHHHHHHHHcCCCccHHhHHHHHHHH
Q 026853 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIVG--KTPLEEAAIIVEDYGLPCAKHEFVNEVYSM 82 (232)
Q Consensus 6 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (232)
.+++|+|+||+||||++++. +..+++.+|........ ....+ ....+.+...+..... .. ..+...
T Consensus 9 ~~~~k~viFDfDGTL~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~----~~~~~~ 77 (224)
T PLN02954 9 WRSADAVCFDVDSTVCVDEG-----IDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKP--SL----SQVEEF 77 (224)
T ss_pred HccCCEEEEeCCCcccchHH-----HHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCC--CH----HHHHHH
Confidence 35789999999999999743 46677778764333332 22222 2333333333333321 11 122222
Q ss_pred HHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc--cccceeec--------ccc----cCCCC
Q 026853 83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSVIVG--------SDE----VRTGK 148 (232)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~--~~~~~~~~--------~~~----~~~~k 148 (232)
+.. ....++||+.++++.|+++|++++|+|++....++..+ +.+|+. .+|+..+. +.. ....+
T Consensus 78 ~~~--~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l-~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 154 (224)
T PLN02954 78 LEK--RPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVA-AILGIPPENIFANQILFGDSGEYAGFDENEPTSRSG 154 (224)
T ss_pred HHH--ccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCc
Confidence 222 13468999999999999999999999999999999888 888886 35543111 111 12356
Q ss_pred CCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCc-cccchhhhHhhhhccCcCcc
Q 026853 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ-THRYTAADEVINSLLDLRPE 217 (232)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~-~~~~~~~~~~~~~l~el~~~ 217 (232)
+++..++.+++.++. +++++|||+.+|+.+++.+|+.++...++... ......+++++.++.|+..+
T Consensus 155 ~K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~~ 222 (224)
T PLN02954 155 GKAEAVQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDLIEV 222 (224)
T ss_pred cHHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHHHHh
Confidence 788999999998885 68999999999999999988876554443322 22355688999999888664
No 48
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.92 E-value=5.1e-23 Score=148.64 Aligned_cols=184 Identities=13% Similarity=0.087 Sum_probs=124.7
Q ss_pred ccEEEEeCCCcccccHHHH-------HHHHHHHHHHcCCCCCcchhhhhcCCCh-HHHHHHHHHHcCCC---ccHHhHHH
Q 026853 9 MSCVILDLDGTLLNTDGMF-------SEVLKTFLVKYGKEWDGREKHKIVGKTP-LEEAAIIVEDYGLP---CAKHEFVN 77 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~ 77 (232)
+++|++|+.||+.+-.-.. .+.+..++....-......++...+... ......+......+ ...+.+..
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~lk~lqg 80 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFVNDNYESTIVENLRELGKTPEELILLRKLHAEMDKDRKATPLKTLQG 80 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHHhCCCHHHHHHHHhccCCcHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 5789999999999763221 2223333333221111222222222211 22222333333333 23444444
Q ss_pred H-HHHHHHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhc---CCccccceeecccccCCCCCCHHH
Q 026853 78 E-VYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH---GWNESFSVIVGSDEVRTGKPSPDI 153 (232)
Q Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~---~l~~~~~~~~~~~~~~~~kp~~~~ 153 (232)
. |.+.+........++||+.++|++|+++|++++|+||++...+...+ ++. ++..+|+.++.. . ...||+|+.
T Consensus 81 ~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~-~~~~~~~L~~~f~~~fd~-~-~g~KP~p~~ 157 (220)
T TIGR01691 81 LIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLF-GHSDAGNLTPYFSGYFDT-T-VGLKTEAQS 157 (220)
T ss_pred HHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-hhccccchhhhcceEEEe-C-cccCCCHHH
Confidence 4 44444444445679999999999999999999999999988777666 654 566777776642 2 337999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCC
Q 026853 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 154 ~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~ 195 (232)
|..+++++|++|++++||||+..|+.+|+++|+.++++.++.
T Consensus 158 y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 158 YVKIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred HHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEECCC
Confidence 999999999999999999999999999999999999998844
No 49
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.91 E-value=3.4e-23 Score=143.19 Aligned_cols=211 Identities=19% Similarity=0.227 Sum_probs=147.9
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHH-----HHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHH
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLK-----TFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYS 81 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (232)
+++++++||+|+||+.....+....+ .+..++|+..+........-...+...-.-+...+...+..+....+..
T Consensus 13 ~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL~~~~~~~d~deY~~~V~~ 92 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGLKAVGYIFDADEYHRFVHG 92 (244)
T ss_pred ccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHhhc
Confidence 47899999999999987555544433 3445778765554432222222222222223334444344433322211
Q ss_pred HHHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccC------CCCCCHHHHH
Q 026853 82 MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR------TGKPSPDIFL 155 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~------~~kp~~~~~~ 155 (232)
.. -++.+.|.+..+++|-.|+.++ .+++||+...++.+.| +++|+.++|+.+++.+... ..||.+++|+
T Consensus 93 ~L--Plq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~L-k~LGieDcFegii~~e~~np~~~~~vcKP~~~afE 167 (244)
T KOG3109|consen 93 RL--PLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRIL-KKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFE 167 (244)
T ss_pred cC--cHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHH-HHhChHHhccceeEeeccCCCCCceeecCCHHHHH
Confidence 11 1245788899999999988763 8999999999999999 9999999999999876544 4699999999
Q ss_pred HHHHhcCCC-CCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCccccCCCC
Q 026853 156 EAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPP 223 (232)
Q Consensus 156 ~~~~~~~~~-~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~~~~~ 223 (232)
.+++..|+. |.+++||+||.++|..|++.|+.++++...+.. ..-..+-..+....+..+.++..+.
T Consensus 168 ~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~~~-~~~d~~l~~ih~~k~a~p~l~~~~~ 235 (244)
T KOG3109|consen 168 KAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREHKI-KGVDYALEQIHNNKEALPELWEILE 235 (244)
T ss_pred HHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEEeeecc-cchHHHHHHhhchhhhchHHhhccc
Confidence 999999998 999999999999999999999999999883322 2223444455566666777776544
No 50
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.91 E-value=2.4e-23 Score=150.60 Aligned_cols=106 Identities=13% Similarity=0.058 Sum_probs=88.5
Q ss_pred hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCC----------CCHHHHHH
Q 026853 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGK----------PSPDIFLE 156 (232)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~k----------p~~~~~~~ 156 (232)
+...+++||+.++|+.|+++|++++|+|++....+...+ +.+|+..+|+..+..++.+..+ +++..++.
T Consensus 76 ~~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~ 154 (201)
T TIGR01491 76 FKEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVA-EKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVER 154 (201)
T ss_pred HHhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHH
Confidence 345689999999999999999999999999999999888 8889888877665554333222 33468889
Q ss_pred HHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 157 ~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
++++++++++++++|||+.+|+.+++.+|+.++....
T Consensus 155 ~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~ 191 (201)
T TIGR01491 155 LKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDE 191 (201)
T ss_pred HHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCC
Confidence 9999999999999999999999999999998666554
No 51
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.90 E-value=2.7e-23 Score=158.23 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=126.1
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhh--hhcC-CChHHHHHHHHHHcCCCccHHhHHHHHHHHH
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH--KIVG-KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF 83 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
..+++++||+||||+.. +.+.++++.+|.......+. ...+ ...............- ..++. +
T Consensus 108 ~~~~LvvfDmDGTLI~~-----e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g--~~~~i-------l 173 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQI-----ECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKG--ADANI-------L 173 (322)
T ss_pred cCCCEEEEECCCCCcch-----HHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCC--CCHHH-------H
Confidence 46899999999999943 44566666676644333221 1222 1222222222221110 11111 1
Q ss_pred HhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccc-------eeeccc---ccCCCCCCHHH
Q 026853 84 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-------VIVGSD---EVRTGKPSPDI 153 (232)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~-------~~~~~~---~~~~~kp~~~~ 153 (232)
+......++.||+.++++.|++.|++++|+|++........+ +++++...+. ..+++. +....+|++..
T Consensus 174 ~~v~~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~-~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~ 252 (322)
T PRK11133 174 QQVRENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLR-DKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADT 252 (322)
T ss_pred HHHHHhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHH-HHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHH
Confidence 222245789999999999999999999999999988777666 7788865443 112121 23356899999
Q ss_pred HHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhh
Q 026853 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (232)
Q Consensus 154 ~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~ 209 (232)
++++++++|+++++|++|||+.||+.|++.+|+.+++ +..+..+..|++.++
T Consensus 253 L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~----nAkp~Vk~~Ad~~i~ 304 (322)
T PRK11133 253 LTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY----HAKPKVNEQAQVTIR 304 (322)
T ss_pred HHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe----CCCHHHHhhCCEEec
Confidence 9999999999999999999999999999999977665 346777888888875
No 52
>PRK06769 hypothetical protein; Validated
Probab=99.90 E-value=1.4e-23 Score=147.27 Aligned_cols=128 Identities=14% Similarity=0.182 Sum_probs=102.6
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchH--------HHHHHHhhhcCCccccceee-cccccCCCCCCHHHHHHHHHh
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRA--------TIESKISYQHGWNESFSVIV-GSDEVRTGKPSPDIFLEAAKR 160 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~--------~~~~~l~~~~~l~~~~~~~~-~~~~~~~~kp~~~~~~~~~~~ 160 (232)
..++||+.++|++|++.|++++|+||.... .....+ +.+|+..+|.... .++.....||+|..|.+++++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQEL-KGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHH-HhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 368999999999999999999999998641 123335 5666655543332 455667899999999999999
Q ss_pred cCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcc-------cc-chhhhHhhhhccCcCccc
Q 026853 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT-------HR-YTAADEVINSLLDLRPEK 218 (232)
Q Consensus 161 ~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~-------~~-~~~~~~~~~~l~el~~~l 218 (232)
++++|++++||||+.+|+.+|+++|+.++++.++.... .. ...++++++++.|+...+
T Consensus 106 l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~l 171 (173)
T PRK06769 106 HGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVNWI 171 (173)
T ss_pred cCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHHHH
Confidence 99999999999999999999999999999999865332 11 346889999999987654
No 53
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.90 E-value=1.2e-23 Score=149.26 Aligned_cols=127 Identities=28% Similarity=0.313 Sum_probs=102.0
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCch---------------HHHHHHHhhhcCCccccceeecc-----cccCCCCC
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----DEVRTGKP 149 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~~~l~~~~~~~~~~-----~~~~~~kp 149 (232)
+.++||+.++|++|++.|++++|+||... ..+...+ +++++ .|+.++.+ +.....||
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~--~f~~i~~~~~~~~~~~~~~KP 104 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSL-ADRGG--RLDGIYYCPHHPEDGCDCRKP 104 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCcCCCC
Confidence 46899999999999999999999999863 2233345 55565 47766543 34567999
Q ss_pred CHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc-chhh--hHhhhhccCcCcccc
Q 026853 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAA--DEVINSLLDLRPEKW 219 (232)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~~--~~~~~~l~el~~~l~ 219 (232)
+|..|..+++++|++++++++|||+.+|+.+|+++|+.++++..|...... ...+ +++++++.|+..++.
T Consensus 105 ~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~~~l~ 177 (181)
T PRK08942 105 KPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLPQALK 177 (181)
T ss_pred CHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999886543222 3345 889999998877654
No 54
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.90 E-value=2.8e-23 Score=146.58 Aligned_cols=123 Identities=24% Similarity=0.309 Sum_probs=99.3
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCch---------------HHHHHHHhhhcCCccccceeecc-----------cc
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----------DE 143 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~~~l~~~~~~~~~~-----------~~ 143 (232)
..++||+.++|++|+++|++++++||.+. ..+...+ ...++. |+.++.+ +.
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~--~~~i~~~~~~~~~~~~~~~~ 101 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSL-AERDVD--LDGIYYCPHHPEGVEEFRQV 101 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCCC--ccEEEECCCCCcccccccCC
Confidence 46899999999999999999999999974 2233344 444553 6665432 24
Q ss_pred cCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEE-EEeCCCCCcccc-chhhhHhhhhccCcC
Q 026853 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHR-YTAADEVINSLLDLR 215 (232)
Q Consensus 144 ~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~-i~v~~~~~~~~~-~~~~~~~~~~l~el~ 215 (232)
....||+|..|..+++++++++++++||||+.+|+.+|+++|+.+ +++.+|...... ...|+++++++.||.
T Consensus 102 ~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 102 CDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred CCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence 557899999999999999999999999999999999999999998 798887554333 346899999999885
No 55
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.88 E-value=2.3e-22 Score=137.71 Aligned_cols=103 Identities=26% Similarity=0.359 Sum_probs=85.1
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCch---------------HHHHHHHhhhcCCccc--ccee-ecccccCCCCCCHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNES--FSVI-VGSDEVRTGKPSPD 152 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~~~l~~~--~~~~-~~~~~~~~~kp~~~ 152 (232)
.++||+.++|+.|+++|++++|+||... ..+...+ +++++... |... .+++.....||+|+
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~KP~~~ 105 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELL-RQLGVAVDGVLFCPHHPADNCSCRKPKPG 105 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHH-HhCCCceeEEEECCCCCCCCCCCCCCCHH
Confidence 6899999999999999999999999873 3445556 77777521 1111 12455566899999
Q ss_pred HHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCC
Q 026853 153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (232)
+++.++++++++++++++|||+..|+.+|+++|+.++++++|
T Consensus 106 ~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 106 LILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 999999999999999999999999999999999999999874
No 56
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.87 E-value=3.6e-21 Score=140.02 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=106.1
Q ss_pred EEEEeCCCcccccHHHHHHHHHHHHHHcCCCC-CcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHhhhcc
Q 026853 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW-DGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK 89 (232)
Q Consensus 11 ~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (232)
+|+||+||||+|+...+ .+|... +...+..+.+.. .+..+.+.. -..
T Consensus 65 aViFDlDgTLlDSs~~~---------~~G~~~~s~~~~~~l~g~~--------------------~w~~~~~~~---~~~ 112 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGF---------WRGKKTFSPGSEDYLKNQV--------------------FWEKVNNGW---DEF 112 (237)
T ss_pred EEEEeCCCccccCcHHH---------hCCcccCCHHHhhhhcChH--------------------HHHHHHHhc---ccC
Confidence 89999999999997655 144332 222222222221 122222221 123
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCC----chHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCC
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNS----HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~----~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (232)
..+.+++.++|++++++|++++++||. ....+...+ +++|+..+|+.+++++.....||++. .+++++++
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll-~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i-- 186 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLA-KNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI-- 186 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHH-HHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC--
Confidence 456777999999999999999999998 445566666 88999999999998888777777764 35566776
Q ss_pred CcEEEEeCchhhhhhhhhcCCEEEEeCCCCCc
Q 026853 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ 197 (232)
Q Consensus 166 ~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~ 197 (232)
++||||+.+|+.+|+++|+.++.|.++...
T Consensus 187 --~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s 216 (237)
T TIGR01672 187 --RIHYGDSDNDITAAKEAGARGIRILRASNS 216 (237)
T ss_pred --eEEEeCCHHHHHHHHHCCCCEEEEEecCCC
Confidence 799999999999999999999999885433
No 57
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.87 E-value=4.3e-22 Score=138.08 Aligned_cols=107 Identities=16% Similarity=0.072 Sum_probs=95.4
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCC-chHHHHHHHhhhcCCc---------cccceeecccccCCCCCCHHHHHHHH
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWN---------ESFSVIVGSDEVRTGKPSPDIFLEAA 158 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~~~l~---------~~~~~~~~~~~~~~~kp~~~~~~~~~ 158 (232)
...++||+.++|+.|+++|++++++||. ....++..+ +.+++. .+|+.+++++.....||.+.+++.+.
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L-~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~ 121 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEIL-GTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVN 121 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHH-HhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhh
Confidence 4678999999999999999999999998 788788888 888988 99999999887666777777777777
Q ss_pred Hhc--CCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCC
Q 026853 159 KRL--NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (232)
Q Consensus 159 ~~~--~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~ 196 (232)
+.+ +++|++|+||||+..|+.+|+++|+.++++..|..
T Consensus 122 ~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~ 161 (174)
T TIGR01685 122 KVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMD 161 (174)
T ss_pred hcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCcc
Confidence 777 89999999999999999999999999999988543
No 58
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.87 E-value=8.8e-22 Score=143.92 Aligned_cols=192 Identities=13% Similarity=0.117 Sum_probs=124.1
Q ss_pred ccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhh---cCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHh
Q 026853 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI---VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
-++|+||+||||++.+... . ++++++. ..++.+... -.....+.+...++.+.... .+.+.+.+.
T Consensus 3 ~~~vifDfDgTi~~~d~~~-~----~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~- 70 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII-A----IMKKFAP-PEWEELKDDILSQELSIQEGVGQMFQLLPSNL-----KEEIIQFLL- 70 (219)
T ss_pred CcEEEEcCCCCCCcchhhH-H----HHHHhCH-HHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCc-----hHHHHHHHH-
Confidence 3589999999999987643 2 3334432 222222211 11234455566666543221 122222222
Q ss_pred hhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc--cc--ceeecccccCCCCCCHHH--------
Q 026853 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SF--SVIVGSDEVRTGKPSPDI-------- 153 (232)
Q Consensus 86 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~--~~--~~~~~~~~~~~~kp~~~~-------- 153 (232)
...+++||+.++|+.|+++|++++|+|++....+...+ +++ +.. .+ +..+.++.....||.|..
T Consensus 71 --~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~ 146 (219)
T PRK09552 71 --ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLL-QGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCG 146 (219)
T ss_pred --hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHH-HHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCC
Confidence 34689999999999999999999999999999999888 665 533 22 333444555556666543
Q ss_pred --HHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCC--CccccchhhhHhhhhccCcCcccc
Q 026853 154 --FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP--KQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 154 --~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~--~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
...++++++..++++++|||+.+|+.+|+.+|+..+ .+. ...+....+...++++.|+.+.+.
T Consensus 147 ~~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a---~~~l~~~~~~~~~~~~~~~~f~ei~~~l~ 213 (219)
T PRK09552 147 CCKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA---RDFLITKCEELGIPYTPFETFHDVQTELK 213 (219)
T ss_pred CchHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee---HHHHHHHHHHcCCCccccCCHHHHHHHHH
Confidence 357888999999999999999999999999997333 211 111123446666777777766543
No 59
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.86 E-value=2.3e-21 Score=133.76 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=90.0
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCc---------------hHHHHHHHhhhcCCccccceee-c----ccccCCCCC
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSH---------------RATIESKISYQHGWNESFSVIV-G----SDEVRTGKP 149 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~---------------~~~~~~~l~~~~~l~~~~~~~~-~----~~~~~~~kp 149 (232)
+.++||+.++|++|+++|++++|+||.. ...+...+ +.+|+. |+.++ + +++....||
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l-~~~gl~--fd~ii~~~~~~~~~~~~~KP 104 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIF-RSQGII--FDDVLICPHFPDDNCDCRKP 104 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHCCCc--eeEEEECCCCCCCCCCCCCC
Confidence 5789999999999999999999999963 34556666 888885 77554 4 477888999
Q ss_pred CHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCC
Q 026853 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (232)
++..+..+++++++++++++||||+.+|+.+|+++|+.++++..+
T Consensus 105 ~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~ 149 (161)
T TIGR01261 105 KIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEE 149 (161)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChh
Confidence 999999999999999999999999999999999999999999883
No 60
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.86 E-value=3.1e-21 Score=139.95 Aligned_cols=189 Identities=17% Similarity=0.117 Sum_probs=118.6
Q ss_pred ccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcC-CChHHHHHHHHHHcC-CCccHHhHHHHHHHHHHhh
Q 026853 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYG-LPCAKHEFVNEVYSMFSDH 86 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 86 (232)
+++|+||+||||++ +.+..+.+++|.+.... + ..+ ......+........ ...+.+++ ...
T Consensus 1 ~~~v~FD~DGTL~~------~~~~~~~~~~g~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i--------~~~ 63 (205)
T PRK13582 1 MEIVCLDLEGVLVP------EIWIAFAEKTGIPELRA-T--TRDIPDYDVLMKQRLDILDEHGLGLADI--------QEV 63 (205)
T ss_pred CeEEEEeCCCCChh------hHHHHHHHHcCChHHHH-H--hcCCCCHHHHHHHHHHHHHHcCCCHHHH--------HHH
Confidence 37899999999993 23455667777642111 0 001 112222221221111 01112211 222
Q ss_pred hccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccc----cCCCCCCHHHHHHHHHhcC
Q 026853 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----VRTGKPSPDIFLEAAKRLN 162 (232)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~----~~~~kp~~~~~~~~~~~~~ 162 (232)
....+++||+.++|+.|+++ ++++|+|++....+...+ +++++..+|+..+...+ .+..++.|.....+++.++
T Consensus 64 ~~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~ 141 (205)
T PRK13582 64 IATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLM-RQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALK 141 (205)
T ss_pred HHhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHH-HHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHH
Confidence 34567899999999999999 999999999999999888 88999887765432211 1122233444556666777
Q ss_pred CCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhH-hhhhccCcCcccc
Q 026853 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE-VINSLLDLRPEKW 219 (232)
Q Consensus 163 ~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~-~~~~l~el~~~l~ 219 (232)
..++++++||||.+|+.+++.+|+.. .++. ........+++ +++++.|+...+.
T Consensus 142 ~~~~~~v~iGDs~~D~~~~~aa~~~v-~~~~--~~~~~~~~~~~~~~~~~~el~~~l~ 196 (205)
T PRK13582 142 SLGYRVIAAGDSYNDTTMLGEADAGI-LFRP--PANVIAEFPQFPAVHTYDELLAAID 196 (205)
T ss_pred HhCCeEEEEeCCHHHHHHHHhCCCCE-EECC--CHHHHHhCCcccccCCHHHHHHHHH
Confidence 77899999999999999999999754 3433 11111234454 7899998877655
No 61
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.86 E-value=1.5e-20 Score=126.71 Aligned_cols=97 Identities=24% Similarity=0.445 Sum_probs=84.6
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCc--------hHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhc-
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSH--------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL- 161 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~--------~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~- 161 (232)
.++|++.++|+.|++.|++++++||.. ...+...+ +++++. ++..+.+. ...||+++.|+.+++++
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l-~~~~l~--~~~~~~~~--~~~KP~~~~~~~~~~~~~ 99 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRL-EELGVP--IDVLYACP--HCRKPKPGMFLEALKRFN 99 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHH-HHCCCC--EEEEEECC--CCCCCChHHHHHHHHHcC
Confidence 588999999999999999999999998 77777777 888885 33333333 56799999999999999
Q ss_pred CCCCCcEEEEeC-chhhhhhhhhcCCEEEEeC
Q 026853 162 NMEPSSSLVIED-SVIGVVAGKAAGMEVVAVP 192 (232)
Q Consensus 162 ~~~~~~~~~vgD-~~~Di~~a~~~G~~~i~v~ 192 (232)
++++++++|||| +.+|+.+|+.+|+.+++++
T Consensus 100 ~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 100 EIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 599999999999 6899999999999999986
No 62
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.84 E-value=2.1e-20 Score=127.00 Aligned_cols=103 Identities=31% Similarity=0.466 Sum_probs=92.8
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCC----------------CCCH
Q 026853 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG----------------KPSP 151 (232)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~----------------kp~~ 151 (232)
....+++++.++++.|+++|++++++|++....+...+ +..++...++.+++....... ||++
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELL-EELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNP 99 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHH-HHcCCchhhhheeccchhhhhcccccccccccccccCCCCH
Confidence 45689999999999999999999999999999998888 888888888888877655444 9999
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEe
Q 026853 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (232)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v 191 (232)
..+..+++.++.+++++++|||+.+|+.+++.+|+.+++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 100 DKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 9999999999999999999999999999999999998875
No 63
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.83 E-value=1.5e-19 Score=129.40 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=79.5
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccc--------------------cCCCC
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE--------------------VRTGK 148 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~--------------------~~~~k 148 (232)
..++.|++.++++.|++.|++++++|++....+...+ +++++..+|+.+++.+. ...+.
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 148 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVL-EGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGC 148 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH-HHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCC
Confidence 4689999999999999999999999999999998888 88899999998886532 12334
Q ss_pred CCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCC
Q 026853 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186 (232)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~ 186 (232)
+|+..++++.+.. +++++||||+.+|+++|+++++
T Consensus 149 ~K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~ 183 (188)
T TIGR01489 149 CKGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDV 183 (188)
T ss_pred CHHHHHHHHHhhc---CceEEEECCCcchhchHhcCCc
Confidence 5677888777665 7999999999999999999983
No 64
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.83 E-value=2.3e-20 Score=129.65 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=82.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchH------------HHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRA------------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~------------~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~ 158 (232)
.++||+.++|+.|++.|++++|+||.+.. .+...+ +++|+.. +.+++++.....||+|..+..++
T Consensus 42 ~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l-~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~ 118 (166)
T TIGR01664 42 FLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFL-EKLKVPI--QVLAATHAGLYRKPMTGMWEYLQ 118 (166)
T ss_pred EecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHH-HHcCCCE--EEEEecCCCCCCCCccHHHHHHH
Confidence 37899999999999999999999998653 355667 8888843 56666666567899999999999
Q ss_pred HhcC--CCCCcEEEEeCch--------hhhhhhhhcCCEEEE
Q 026853 159 KRLN--MEPSSSLVIEDSV--------IGVVAGKAAGMEVVA 190 (232)
Q Consensus 159 ~~~~--~~~~~~~~vgD~~--------~Di~~a~~~G~~~i~ 190 (232)
++++ +++++++||||+. +|+.+|+++|+.+++
T Consensus 119 ~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 119 SQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 9999 9999999999996 699999999988754
No 65
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.83 E-value=3.7e-19 Score=127.62 Aligned_cols=181 Identities=16% Similarity=0.120 Sum_probs=113.1
Q ss_pred cEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCC-ChHHHHHHHH---HHcCCCccHHhHHHHHHHHHHh
Q 026853 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGK-TPLEEAAIIV---EDYGLPCAKHEFVNEVYSMFSD 85 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
++++||+||||++. .|.++..+.|... .. .. ..+. .........+ +..|.+ .+.+ ++
T Consensus 2 ~la~FDlD~TLi~~------~w~~~~~~~g~~~-~~-~~-~~~~~~~~~~~~~r~~ll~~~g~~--~~~i--------~~ 62 (203)
T TIGR02137 2 EIACLDLEGVLVPE------IWIAFAEKTGIDA-LK-AT-TRDIPDYDVLMKQRLRILDEHGLK--LGDI--------QE 62 (203)
T ss_pred eEEEEeCCcccHHH------HHHHHHHHcCCcH-HH-HH-hcCCcCHHHHHHHHHHHHHHCCCC--HHHH--------HH
Confidence 56999999999964 3566777777422 11 11 1111 1122222111 112333 2222 22
Q ss_pred hhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccce--------eecccccCCCCCCHHHHHHH
Q 026853 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV--------IVGSDEVRTGKPSPDIFLEA 157 (232)
Q Consensus 86 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~--------~~~~~~~~~~kp~~~~~~~~ 157 (232)
....++++||+.++++.+++.+ +++|+|++....+...+ +++|+..+|.. .+++... ..++.+..+...
T Consensus 63 ~~~~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il-~~lgi~~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~ 139 (203)
T TIGR02137 63 VIATLKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLM-RQLGFPTLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVIA 139 (203)
T ss_pred HHHhCCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHH-HHcCCchhhceeeEEecCCeeECeee-cCcchHHHHHHH
Confidence 2345689999999999999975 99999999999999888 89999887753 2222211 234444444444
Q ss_pred HHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchh-h-hHhhhhccCcCcccc
Q 026853 158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA-A-DEVINSLLDLRPEKW 219 (232)
Q Consensus 158 ~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~-~-~~~~~~l~el~~~l~ 219 (232)
+++.+. ++++||||.||+.|++.+|...++... +..... + -.++.+++|++..+.
T Consensus 140 l~~~~~---~~v~vGDs~nDl~ml~~Ag~~ia~~ak----~~~~~~~~~~~~~~~~~~~~~~~~ 196 (203)
T TIGR02137 140 FKSLYY---RVIAAGDSYNDTTMLSEAHAGILFHAP----ENVIREFPQFPAVHTYEDLKREFL 196 (203)
T ss_pred HHhhCC---CEEEEeCCHHHHHHHHhCCCCEEecCC----HHHHHhCCCCCcccCHHHHHHHHH
Confidence 455553 799999999999999999988666655 222221 2 234566777766554
No 66
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.82 E-value=6.9e-21 Score=141.93 Aligned_cols=125 Identities=19% Similarity=0.168 Sum_probs=100.5
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeeccccc---CCCCCCHHHHHHHHHhcCCCCCcEE
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV---RTGKPSPDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~---~~~kp~~~~~~~~~~~~~~~~~~~~ 169 (232)
++++.+.++.|+..+.++++.||.......... ...++..+|+.+..+... ..+||+|..++.+++++++++++++
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~ 200 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDG-LALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAV 200 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCC-CCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEE
Confidence 567788888898888999999998776655455 566777778766544332 2479999999999999999999999
Q ss_pred EEeCch-hhhhhhhhcCCEEEEeCCCCCc-c---ccchhhhHhhhhccCcCccc
Q 026853 170 VIEDSV-IGVVAGKAAGMEVVAVPSLPKQ-T---HRYTAADEVINSLLDLRPEK 218 (232)
Q Consensus 170 ~vgD~~-~Di~~a~~~G~~~i~v~~~~~~-~---~~~~~~~~~~~~l~el~~~l 218 (232)
||||+. +|+.+|+.+|+.+++|.+|... . .....|+++++++.|+.+++
T Consensus 201 ~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~~~l 254 (257)
T TIGR01458 201 MIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAVDLI 254 (257)
T ss_pred EECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHHHHHH
Confidence 999997 9999999999999999987432 2 12456889999999987654
No 67
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.82 E-value=1.9e-20 Score=141.51 Aligned_cols=122 Identities=25% Similarity=0.332 Sum_probs=93.3
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceee---cccccCCCCCCHHHHHHHHHhcCCCCCcE
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV---GSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~---~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (232)
.++++.+.++.|++.|. ++++||.+............++..+|+.+. ..+....+||+|..+..++++++++++++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 36788999999998886 789998876443111113445555665543 23455678999999999999999999999
Q ss_pred EEEeCch-hhhhhhhhcCCEEEEeCCCCCcccc-c---------hhhhHhhhhccCc
Q 026853 169 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR-Y---------TAADEVINSLLDL 214 (232)
Q Consensus 169 ~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~-~---------~~~~~~~~~l~el 214 (232)
+||||+. .||.+|+++|+.+++|.+|....+. . ..|+++++++.|+
T Consensus 223 lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred EEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 9999996 9999999999999999997654333 1 3588999988875
No 68
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.81 E-value=6.8e-19 Score=126.78 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=90.8
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccc----------cCCCCCCHHHHHHHHH
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----------VRTGKPSPDIFLEAAK 159 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~----------~~~~kp~~~~~~~~~~ 159 (232)
.++.||+.++++.+++.|++++|+|++....++... +.+|+...+......++ ...++.+...+.++++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia-~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIA-ERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHH-HHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 789999999999999999999999999999888777 99999887765544433 1123446678889999
Q ss_pred hcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhh
Q 026853 160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (232)
Q Consensus 160 ~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~ 209 (232)
.+|+++++++++|||.||+.|.+.+|.+ +.++. .+.....++....
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpml~~ag~~-ia~n~---~~~l~~~a~~~~~ 200 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPMLEAAGLP-IAVNP---KPKLRALADVRIW 200 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHHHHhCCCC-eEeCc---CHHHHHHHHHhcC
Confidence 9999999999999999999999999977 44443 2334444444333
No 69
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.79 E-value=7.2e-18 Score=122.03 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=90.9
Q ss_pred ccHHhHHHHHHHHHHhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccce-eec-------c
Q 026853 70 CAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV-IVG-------S 141 (232)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~-~~~-------~ 141 (232)
.+.+++.....+.+.+.. ...++|++.++++.++++|++++|+|++....++..+ +++|+...|.. +.. +
T Consensus 67 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~-~~lg~~~~~~~~l~~~~~g~~~g 144 (202)
T TIGR01490 67 LLEEDVRAIVEEFVNQKI-ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLA-RILGIDNAIGTRLEESEDGIYTG 144 (202)
T ss_pred CCHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHcCCcceEecceEEcCCCEEeC
Confidence 334555444444444332 3468999999999999999999999999999888888 88898877654 221 1
Q ss_pred c---ccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEe
Q 026853 142 D---EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (232)
Q Consensus 142 ~---~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v 191 (232)
. ....++++...+++++++.++++++++++|||.+|+.+++.+|..++..
T Consensus 145 ~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 145 NIDGNNCKGEGKVHALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred CccCCCCCChHHHHHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 1 1123456677789999999999999999999999999999999775443
No 70
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.78 E-value=6.5e-18 Score=118.30 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=83.3
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCc-hHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSH-RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 169 (232)
.++|++.++|+.|++.|++++++||.. ...+...+ +.+++..+ ....||+|..+..+++++++++++++
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~-~~~gl~~~---------~~~~KP~p~~~~~~l~~~~~~~~~~l 112 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVE-KALGIPVL---------PHAVKPPGCAFRRAHPEMGLTSEQVA 112 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHH-HHcCCEEE---------cCCCCCChHHHHHHHHHcCCCHHHEE
Confidence 568899999999999999999999998 45555444 66665322 13469999999999999999999999
Q ss_pred EEeCch-hhhhhhhhcCCEEEEeCCCCCccc
Q 026853 170 VIEDSV-IGVVAGKAAGMEVVAVPSLPKQTH 199 (232)
Q Consensus 170 ~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~ 199 (232)
+|||+. .|+.+|+++|+.+++|.+|....+
T Consensus 113 ~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~ 143 (170)
T TIGR01668 113 VVGDRLFTDVMGGNRNGSYTILVEPLVHPDQ 143 (170)
T ss_pred EECCcchHHHHHHHHcCCeEEEEccCcCCcc
Confidence 999998 799999999999999998764443
No 71
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.77 E-value=1.4e-18 Score=127.04 Aligned_cols=90 Identities=31% Similarity=0.438 Sum_probs=77.8
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEE
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 169 (232)
.++.|++.++|+.|++.|++++++|+.....+.... +.+|+.. ..+.+... +||.+.++..+++.+++++++|+
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~-~~lgi~~---~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIA-KQLGIFD---SIVFARVI--GKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHH-HHTTSCS---EEEEESHE--TTTHHHHHHHHHHHHTCTGGGEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccccc-ccccccc---cccccccc--ccccchhHHHHHHHHhcCCCEEE
Confidence 368899999999999999999999999999888888 8889833 22222221 79999999999999999999999
Q ss_pred EEeCchhhhhhhhhcC
Q 026853 170 VIEDSVIGVVAGKAAG 185 (232)
Q Consensus 170 ~vgD~~~Di~~a~~~G 185 (232)
||||+.||+.|+++||
T Consensus 200 ~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 200 MVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEESSGGHHHHHHHSS
T ss_pred EEccCHHHHHHHHhCc
Confidence 9999999999999987
No 72
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.77 E-value=8.6e-18 Score=122.42 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=115.8
Q ss_pred EEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhh---cCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHhhhc
Q 026853 12 VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI---VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC 88 (232)
Q Consensus 12 i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (232)
|+||+||||++.+... .+++.+.. ..+..+... -..+..+.+...++...... . ..+.+.+. .
T Consensus 2 ~~fDFDgTit~~d~~~-----~~~~~~~~-~~~~~~~~~~~~g~~~~~e~~~~~~~~~~~~~-~----~~~~~~~~---~ 67 (214)
T TIGR03333 2 IICDFDGTITNNDNII-----SIMKQFAP-PEWEALKDGVLSKTLSIQEGVGRMFGLLPSSL-K----EEITSFVL---E 67 (214)
T ss_pred EEeccCCCCCcchhHH-----HHHHHhCc-HHHHHHHHHHHcCCccHHHHHHHHHhhCCCch-H----HHHHHHHH---h
Confidence 7999999999775421 22222221 111112111 12335555566665543331 1 12222222 2
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcccc---ceeecccccCCCCCCHHHH----------H
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF---SVIVGSDEVRTGKPSPDIF----------L 155 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~---~~~~~~~~~~~~kp~~~~~----------~ 155 (232)
..+++||+.++++.|++.|++++|+|++....+...+ +.++....+ +..+.++.....+|.+..+ .
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~ 146 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLL-EGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKP 146 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHH
Confidence 4689999999999999999999999999999888888 665433333 2334444445556665543 4
Q ss_pred HHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCC--CccccchhhhHhhhhccCcCcccc
Q 026853 156 EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP--KQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 156 ~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~--~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
.++++++..++++++|||+.+|+.+|+.+|+ .+.++. ...+....+.....++.|+...|.
T Consensus 147 ~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~---~~ar~~l~~~~~~~~~~~~~~~~f~di~~~l~ 209 (214)
T TIGR03333 147 SLIRKLSEPNDYHIVIGDSVTDVEAAKQSDL---CFARDYLLNECEELGLNHAPFQDFYDVRKELE 209 (214)
T ss_pred HHHHHHhhcCCcEEEEeCCHHHHHHHHhCCe---eEehHHHHHHHHHcCCCccCcCCHHHHHHHHH
Confidence 6677777788999999999999999999995 444421 111112234455566666655543
No 73
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.77 E-value=8.6e-18 Score=119.12 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=78.2
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeeccc------------ccCCCCCCHHHHH
Q 026853 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD------------EVRTGKPSPDIFL 155 (232)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~------------~~~~~kp~~~~~~ 155 (232)
..+++.|++.++++.++++|++++|+|++....++..+ +++|+...+...+..+ ....+..|+..++
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~-~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~ 148 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVA-EKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLK 148 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHH
Confidence 34568999999999999999999999999999999888 8888887665433221 1223445667888
Q ss_pred HHHHhcCCCCCcEEEEeCchhhhhhhhhc
Q 026853 156 EAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (232)
Q Consensus 156 ~~~~~~~~~~~~~~~vgD~~~Di~~a~~~ 184 (232)
..+++++++++++++||||.+|+.+++.+
T Consensus 149 ~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 149 ELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 88899999999999999999999999764
No 74
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.77 E-value=1.8e-18 Score=115.33 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=76.9
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCC-chHHHHHHHhhhcC-------CccccceeecccccCCCCCCHHHHHHHHHhcC
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHG-------WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~~~-------l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~ 162 (232)
.++||+.++|+.|+++|++++++||. ....+...+ +..+ +..+|+.+++++. +|+|+.+..+++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l-~~~~~~~~i~~l~~~f~~~~~~~~----~pkp~~~~~a~~~lg 103 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELL-KIFEDFGIIFPLAEYFDPLTIGYW----LPKSPRLVEIALKLN 103 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHH-HhccccccchhhHhhhhhhhhcCC----CcHHHHHHHHHHHhc
Confidence 58899999999999999999999999 777777777 7777 7888888877753 588999999999999
Q ss_pred --CCCCcEEEEeCchhhhhhhhh
Q 026853 163 --MEPSSSLVIEDSVIGVVAGKA 183 (232)
Q Consensus 163 --~~~~~~~~vgD~~~Di~~a~~ 183 (232)
++|++++||||+..|+...+.
T Consensus 104 ~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 104 GVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred CCCCcceEEEECCCHhHHHHHHh
Confidence 999999999999999877654
No 75
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.76 E-value=9.3e-18 Score=128.74 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=86.1
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCC---------------chHHHHHHHhhhcCCccccceee-c----ccccCCCCC
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNS---------------HRATIESKISYQHGWNESFSVIV-G----SDEVRTGKP 149 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~---------------~~~~~~~~l~~~~~l~~~~~~~~-~----~~~~~~~kp 149 (232)
..++||+.++|+.|++.|++++|+||. ....+...+ +.+++. |+.++ + +++....||
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL-~~~gl~--fd~i~i~~~~~sd~~~~rKP 105 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIF-ESQGIK--FDEVLICPHFPEDNCSCRKP 105 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHH-HHcCCc--eeeEEEeCCcCcccCCCCCC
Confidence 579999999999999999999999995 233344455 666773 66654 3 356678899
Q ss_pred CHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
+|..+..+++.+++.+++++||||+.+|+.+|+++|+.+++++.
T Consensus 106 ~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 106 KTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred CHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 99999999999999999999999999999999999999999976
No 76
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.75 E-value=7.4e-18 Score=127.53 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCch-H---HHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcE
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHR-A---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~-~---~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (232)
++++.+++..++..+..+.++++... . .....+.+.+++.......-..+....+..++.+++.+++.+|++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~ 218 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV 218 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence 45566677777666666666665432 1 1112221434432111100011344455668889999999999999999
Q ss_pred EEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccC
Q 026853 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (232)
Q Consensus 169 ~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~e 213 (232)
++|||+.||++|++.+|+ .|++++..+..+..|++++.+..+
T Consensus 219 i~~GD~~NDi~m~~~ag~---~vamgna~~~lk~~Ad~v~~~n~~ 260 (272)
T PRK10530 219 VAFGDNFNDISMLEAAGL---GVAMGNADDAVKARADLVIGDNTT 260 (272)
T ss_pred EEeCCChhhHHHHHhcCc---eEEecCchHHHHHhCCEEEecCCC
Confidence 999999999999999994 566666677778888888876544
No 77
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.75 E-value=4.3e-17 Score=118.69 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=78.7
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCc----hHHHHHHHhhhcCC--ccccceeecccccCCCCCCHHHHHHHHHhcC
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSH----RATIESKISYQHGW--NESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~~~~l--~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~ 162 (232)
...+.||++++|+.|+++|++++++||.. .......+ +.+|+ ..+|+.+++++.. .|+++.. .+++++
T Consensus 112 ~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Ll-k~~gip~~~~f~vil~gd~~--~K~~K~~---~l~~~~ 185 (237)
T PRK11009 112 FSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLA-DDFHIPADNMNPVIFAGDKP--GQYTKTQ---WLKKKN 185 (237)
T ss_pred cCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHH-HHcCCCcccceeEEEcCCCC--CCCCHHH---HHHhcC
Confidence 46789999999999999999999999964 33444444 67899 7888888877653 5666543 555666
Q ss_pred CCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCC
Q 026853 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (232)
Q Consensus 163 ~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~ 196 (232)
+ ++||||+.+|+.+|+++|+.++.+.+|..
T Consensus 186 i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~ 215 (237)
T PRK11009 186 I----RIFYGDSDNDITAAREAGARGIRILRAAN 215 (237)
T ss_pred C----eEEEcCCHHHHHHHHHcCCcEEEEecCCC
Confidence 5 89999999999999999999999998644
No 78
>PRK10444 UMP phosphatase; Provisional
Probab=99.74 E-value=3.7e-18 Score=126.22 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=63.3
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEEeCCCCCcccc----chhhhHhhhhccCc
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDL 214 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~l~el 214 (232)
+....+||+|..++.+++++++++++++||||+. +|+.+|+++|+.+++|.+|....+. ...++++++++.|+
T Consensus 168 ~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 168 KPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred CccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 3445689999999999999999999999999997 8999999999999999997665443 24688999999887
No 79
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.74 E-value=2.1e-18 Score=128.18 Aligned_cols=79 Identities=27% Similarity=0.376 Sum_probs=64.5
Q ss_pred ceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEEeCCCCCcccc--c--hhhhHhhhh
Q 026853 136 SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR--Y--TAADEVINS 210 (232)
Q Consensus 136 ~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~--~--~~~~~~~~~ 210 (232)
....+.+....+||+|..++.+++++++++++++||||+. +|+.+|+++|+.+++|.+|....+. . ..+++++++
T Consensus 166 ~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~ 245 (249)
T TIGR01457 166 EVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSS 245 (249)
T ss_pred HHHhCCCccccCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCC
Confidence 3344455666789999999999999999999999999997 8999999999999999987654332 1 357788888
Q ss_pred ccCc
Q 026853 211 LLDL 214 (232)
Q Consensus 211 l~el 214 (232)
++|+
T Consensus 246 l~~~ 249 (249)
T TIGR01457 246 LAEW 249 (249)
T ss_pred hhhC
Confidence 7764
No 80
>PLN02645 phosphoglycolate phosphatase
Probab=99.73 E-value=2.8e-18 Score=131.49 Aligned_cols=110 Identities=21% Similarity=0.201 Sum_probs=82.1
Q ss_pred CEEEEeCCchHH-HHHHHhhhcCCccccceeeccccc---CCCCCCHHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhhh
Q 026853 109 PMALASNSHRAT-IESKISYQHGWNESFSVIVGSDEV---RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKA 183 (232)
Q Consensus 109 ~~~i~s~~~~~~-~~~~l~~~~~l~~~~~~~~~~~~~---~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~ 183 (232)
.++++||.+... ....+ ...|...+|+.+...... ..+||+|..+..+++++++++++++||||+. +|+.+|++
T Consensus 188 ~~~i~tn~d~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~ 266 (311)
T PLN02645 188 CLFIATNRDAVTHLTDAQ-EWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLDTDILFGQN 266 (311)
T ss_pred CEEEEeCCCCCCCCCCCC-CccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHHHH
Confidence 577777776533 12222 344555566666544332 2469999999999999999999999999998 99999999
Q ss_pred cCCEEEEeCCCCCcccc------chhhhHhhhhccCcCcccc
Q 026853 184 AGMEVVAVPSLPKQTHR------YTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 184 ~G~~~i~v~~~~~~~~~------~~~~~~~~~~l~el~~~l~ 219 (232)
+|+.+++|.+|....+. ...|+++++++.++.+++.
T Consensus 267 aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~~ 308 (311)
T PLN02645 267 GGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTLKA 308 (311)
T ss_pred cCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHHhh
Confidence 99999999887554332 1468999999999877654
No 81
>PRK11590 hypothetical protein; Provisional
Probab=99.72 E-value=6.5e-16 Score=112.22 Aligned_cols=178 Identities=14% Similarity=0.108 Sum_probs=106.5
Q ss_pred cccEEEEeCCCcccccHHHHHHHHHHHH-HHcCCCCCc-chhhhhcCCChHHHHHH-------HHHH--cCCCccHHhHH
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVLKTFL-VKYGKEWDG-REKHKIVGKTPLEEAAI-------IVED--YGLPCAKHEFV 76 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~~~~ 76 (232)
..|+++||+||||++.+ ....+..++ ++++..... .......+.+....... ++-. .+.+ .+++.
T Consensus 5 ~~k~~iFD~DGTL~~~d--~~~~~~~~~~~~~g~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~~~ 80 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD--MFGSFLRYLLRRQPLNLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGHS--EARLQ 80 (211)
T ss_pred cceEEEEecCCCCcccc--hHHHHHHHHHHhcchhhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCCC--HHHHH
Confidence 45799999999999543 334444444 777754322 33444445433221111 1111 1222 22222
Q ss_pred HHHHHHHHhhh-ccCCCCCcHHHHH-HHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeeccc--------ccCC
Q 026853 77 NEVYSMFSDHL-CKVKALPGANRLI-KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--------EVRT 146 (232)
Q Consensus 77 ~~~~~~~~~~~-~~~~~~~~~~~~l-~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~--------~~~~ 146 (232)
.+.+.+.+.+ ....++||+.+.| +.+++.|++++|+|+.....++..+ ..+++.. .+.++++. ..+.
T Consensus 81 -~~~~~f~~~~~~~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il-~~l~~~~-~~~~i~t~l~~~~tg~~~g~ 157 (211)
T PRK11590 81 -ALEADFVRWFRDNVTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVY-FDTPWLP-RVNLIASQMQRRYGGWVLTL 157 (211)
T ss_pred -HHHHHHHHHHHHhCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHH-HHccccc-cCceEEEEEEEEEccEECCc
Confidence 2222232222 2256799999999 5688889999999999999998888 7777522 23333332 1111
Q ss_pred CCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
..-..+-..++.+.++.+...+.++|||.+|+.|+..+|-+ ++|+.
T Consensus 158 ~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~-~~vnp 203 (211)
T PRK11590 158 RCLGHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHR-WRVTP 203 (211)
T ss_pred cCCChHHHHHHHHHhCCCcceEEEecCCcccHHHHHhCCCC-EEECc
Confidence 11112334445555676777889999999999999999965 55654
No 82
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.68 E-value=8.1e-16 Score=104.85 Aligned_cols=193 Identities=16% Similarity=0.128 Sum_probs=119.3
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchh--hhhcCC-ChHHHHHHHHHHcCCCccHHhHHHHHHHHH
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK--HKIVGK-TPLEEAAIIVEDYGLPCAKHEFVNEVYSMF 83 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
...++++||+|.|++.. +.+.++.+..|+...-... +.+-|. +..+.+...+..+. .+...+.+..
T Consensus 14 ~~~~aVcFDvDSTvi~e-----EgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llq------p~~~qv~~~v 82 (227)
T KOG1615|consen 14 RSADAVCFDVDSTVIQE-----EGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQ------PLQVQVEQFV 82 (227)
T ss_pred HhcCeEEEecCcchhHH-----hhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhc------ccHHHHHHHH
Confidence 35689999999999954 3344444444543222222 112221 11222222222111 1111122111
Q ss_pred HhhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc--cccee--------ecc-c---ccCCCCC
Q 026853 84 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SFSVI--------VGS-D---EVRTGKP 149 (232)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~--~~~~~--------~~~-~---~~~~~kp 149 (232)
. -+...+.||+++++..|++.|..++++|++....+.... ..+|++. .+... +.+ + ....+-.
T Consensus 83 ~--~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va-~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsgg 159 (227)
T KOG1615|consen 83 I--KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVA-EQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGG 159 (227)
T ss_pred h--cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHH-HHhCCcHhhhhhheeeeccCCcccccccCCccccCCc
Confidence 1 135778999999999999999999999999999998877 8888875 22211 111 1 1122334
Q ss_pred CHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCc
Q 026853 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (232)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~ 216 (232)
+++.+..+.+ +.....++||||+.+|+++... |...++...-.-++..+..+.+.+.++..|..
T Consensus 160 Ka~~i~~lrk--~~~~~~~~mvGDGatDlea~~p-a~afi~~~g~~~r~~vk~nak~~~~~f~~L~~ 223 (227)
T KOG1615|consen 160 KAEVIALLRK--NYNYKTIVMVGDGATDLEAMPP-ADAFIGFGGNVIREGVKANAKWYVTDFYVLGG 223 (227)
T ss_pred cHHHHHHHHh--CCChheeEEecCCccccccCCc-hhhhhccCCceEcHhhHhccHHHHHHHHHHcc
Confidence 5677777777 7888899999999999999888 43344444434445557888888888877654
No 83
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.68 E-value=2.7e-17 Score=121.40 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=68.6
Q ss_pred EEEeCCchHHHHHHHhhhcCCccccceee---cccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCE
Q 026853 111 ALASNSHRATIESKISYQHGWNESFSVIV---GSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 187 (232)
Q Consensus 111 ~i~s~~~~~~~~~~l~~~~~l~~~~~~~~---~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~ 187 (232)
.+.++...+.+...+ +..+. .+..+. ..+....+.+++.+++.+++.+|++++++++|||+.||+.|++.+|+
T Consensus 119 ~~~~~~~~~~~~~~l-~~~~~--~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~- 194 (230)
T PRK01158 119 ALRRTVPVEEVRELL-EELGL--DLEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGF- 194 (230)
T ss_pred eecccccHHHHHHHH-HHcCC--cEEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCc-
Confidence 334444444455555 44442 122211 12444567788999999999999999999999999999999999994
Q ss_pred EEEeCCCCCccccchhhhHhhhhccC
Q 026853 188 VVAVPSLPKQTHRYTAADEVINSLLD 213 (232)
Q Consensus 188 ~i~v~~~~~~~~~~~~~~~~~~~l~e 213 (232)
.+.+++..++.+..+++++.+..+
T Consensus 195 --~vam~Na~~~vk~~a~~v~~~n~~ 218 (230)
T PRK01158 195 --GVAVANADEELKEAADYVTEKSYG 218 (230)
T ss_pred --eEEecCccHHHHHhcceEecCCCc
Confidence 455666677888888888876443
No 84
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.68 E-value=4.1e-15 Score=107.70 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=114.0
Q ss_pred EEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcC-CChHHHHHHHHHHcCCC-ccHHhHHHHHHHHHHhhhc
Q 026853 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSDHLC 88 (232)
Q Consensus 11 ~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 88 (232)
+++||+|+||++.+.. ..+++.++...-...+..... ..+...+..+++.+... ...++ +.+...
T Consensus 2 LvvfDFD~TIvd~dsd-----~~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~--------I~~~l~ 68 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSD-----DWVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPED--------IRDALR 68 (234)
T ss_pred EEEEeCCCCccCCccH-----HHHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHH--------HHHHHH
Confidence 6899999999987542 122344443322233333322 22334445555444211 12222 233346
Q ss_pred cCCCCCcHHHHHHHH--HhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccc--------------------cCC
Q 026853 89 KVKALPGANRLIKHL--SCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE--------------------VRT 146 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l--~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~--------------------~~~ 146 (232)
.+++.||+.++++.+ .+.|+.++|+|++....++..| ++.|+...|+.+++... .+.
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL-~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~ 147 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETIL-EHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPP 147 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHH-HhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCC
Confidence 789999999999999 4579999999999999999999 99999999888775421 011
Q ss_pred CCCCHHHHHHHHHh---cCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 147 GKPSPDIFLEAAKR---LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 147 ~kp~~~~~~~~~~~---~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
.-.|...+++.++. -|++..+++|||||.||+.++..++-.-+..++
T Consensus 148 NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R 197 (234)
T PF06888_consen 148 NMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPR 197 (234)
T ss_pred ccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecC
Confidence 12356777777766 377889999999999999999998866556655
No 85
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.65 E-value=1.3e-14 Score=97.99 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=91.9
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhc---CCccccceeecccccCCCCCCHHHHHHHHHhcCCCC
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH---GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~---~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (232)
..+++|++.+.|++.++.|.+++|.|.++-..+.-.. .+. .+..+|+..+-. ..-.|.....|.++++..|++|
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~F-ghs~agdL~~lfsGyfDt--tiG~KrE~~SY~kIa~~iGl~p 177 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFF-GHSDAGDLNSLFSGYFDT--TIGKKRESQSYAKIAGDIGLPP 177 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhh-cccccccHHhhhcceeec--cccccccchhHHHHHHhcCCCc
Confidence 4579999999999999999999999999877554333 332 355566665522 2235666678999999999999
Q ss_pred CcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhcc
Q 026853 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL 212 (232)
Q Consensus 166 ~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~ 212 (232)
.+++|..|..+.+.+|+.+|+.+..+.+....+-.......+.+|++
T Consensus 178 ~eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~d~~~~~~~~sf~ 224 (229)
T COG4229 178 AEILFLSDNPEELKAAAGVGLATGLAVRPGNAPVPDGQGFLVYKSFE 224 (229)
T ss_pred hheEEecCCHHHHHHHHhcchheeeeecCCCCCCCCCcCceeeechh
Confidence 99999999999999999999999999984444333333444455554
No 86
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.65 E-value=1.4e-16 Score=117.33 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=71.4
Q ss_pred EEEEeCCchHHHHHHHhhhcCCcccc-ceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEE
Q 026853 110 MALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188 (232)
Q Consensus 110 ~~i~s~~~~~~~~~~l~~~~~l~~~~-~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~ 188 (232)
..+.+....+.....+ +.++....+ ......+....+.+++.+++.+++.+|++++++++|||+.||+.|++.+|
T Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag--- 185 (225)
T TIGR01482 110 VKMRYGIDVDTVREII-KELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPG--- 185 (225)
T ss_pred EEEeecCCHHHHHHHH-HhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcC---
Confidence 3444444455555555 555542111 00112244566788899999999999999999999999999999999999
Q ss_pred EEeCCCCCccccchhhhHhhhhccC
Q 026853 189 VAVPSLPKQTHRYTAADEVINSLLD 213 (232)
Q Consensus 189 i~v~~~~~~~~~~~~~~~~~~~l~e 213 (232)
+.+.+++..++.+..|++++.+..+
T Consensus 186 ~~vam~Na~~~~k~~A~~vt~~~~~ 210 (225)
T TIGR01482 186 FGVAVANAQPELKEWADYVTESPYG 210 (225)
T ss_pred ceEEcCChhHHHHHhcCeecCCCCC
Confidence 5666777788888999998876544
No 87
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.64 E-value=3.2e-15 Score=110.25 Aligned_cols=75 Identities=27% Similarity=0.405 Sum_probs=66.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEEeCCCCCcccc----chhhhHhhhhccCcCcccc
Q 026853 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~l~el~~~l~ 219 (232)
..+||.+.+++.+++.++..+++++||||+. +||.+++++|+.+++|.+|....+. ...++++.+|+.|+...+.
T Consensus 187 ~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~~~~~~ 266 (269)
T COG0647 187 VIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAELITALK 266 (269)
T ss_pred ccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHHHhhhh
Confidence 5789999999999999999999999999999 8999999999999999998765444 4678999999999876554
No 88
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.64 E-value=4.3e-16 Score=108.03 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=83.5
Q ss_pred HHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhh
Q 026853 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (232)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di 178 (232)
.+..|++.|++++|+|+.....+...+ +++++..+|+.+ ||+|..++.++++++++++++++|||+.||+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l-~~lgi~~~f~~~---------kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi 111 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRA-EELKIKRFHEGI---------KKKTEPYAQMLEEMNISDAEVCYVGDDLVDL 111 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHH-HHCCCcEEEecC---------CCCHHHHHHHHHHcCcCHHHEEEECCCHHHH
Confidence 467788889999999999999999999 999998877642 7899999999999999999999999999999
Q ss_pred hhhhhcCCEEEEeCCCCCccccchhhhHhhh
Q 026853 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (232)
Q Consensus 179 ~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~ 209 (232)
.|++.+|+. +.+.+..+..+..|++++.
T Consensus 112 ~~~~~ag~~---~am~nA~~~lk~~A~~I~~ 139 (169)
T TIGR02726 112 SMMKRVGLA---VAVGDAVADVKEAAAYVTT 139 (169)
T ss_pred HHHHHCCCe---EECcCchHHHHHhCCEEcC
Confidence 999999955 4444446666777777764
No 89
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.62 E-value=2.9e-15 Score=114.87 Aligned_cols=104 Identities=17% Similarity=0.109 Sum_probs=94.2
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc-ccceeeccc-------ccCCCCCCHHHHHHHHHhc
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSD-------EVRTGKPSPDIFLEAAKRL 161 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~-~~~~~~~~~-------~~~~~kp~~~~~~~~~~~~ 161 (232)
..++|++.++++.|++.|++++++|+.+.......+ +++++.. +|+.+++.+ +...+||+|..+..+++++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l-~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~ 264 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTV-EWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK 264 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHH-HHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence 357899999999999999999999999999888888 8889886 899888877 3456899999999999999
Q ss_pred CC-CCCcEEEEeCchhhhhhhhhcCCEEEEeCCC
Q 026853 162 NM-EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 162 ~~-~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (232)
+. +++++++|||+.+|+.+|+++|+.+++|.+|
T Consensus 265 ~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 265 IAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred hccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence 88 6799999999999999999999999999774
No 90
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.62 E-value=4.6e-16 Score=117.17 Aligned_cols=69 Identities=20% Similarity=0.115 Sum_probs=58.9
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccC
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~e 213 (232)
+....+..+..+++.+++++|++++++++|||+.||++|.+.+| ..|++++..+..+..|++++.+..+
T Consensus 182 ei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag---~gvam~Na~~~~k~~A~~vt~~n~~ 250 (264)
T COG0561 182 DITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAG---LGVAMGNADEELKELADYVTTSNDE 250 (264)
T ss_pred EEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcC---eeeeccCCCHHHHhhCCcccCCccc
Confidence 34567788899999999999999999999999999999999999 7778877888888888876655443
No 91
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.60 E-value=1.8e-15 Score=91.21 Aligned_cols=69 Identities=32% Similarity=0.484 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHhcCCCCCcEEEEeCc-hhhhhhhhhcCCEEEEeCCCCCcccc----chhhhHhhhhccCc
Q 026853 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDL 214 (232)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~~~vgD~-~~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~l~el 214 (232)
.+||+|.++..++++++++++++++|||+ ..||.+|+++|+.+++|.+|....+. ...|+++++++.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 58999999999999999999999999999 69999999999999999998766654 35899999999875
No 92
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.60 E-value=2.6e-15 Score=102.79 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=85.3
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc-ccceeecccccCCCCCCHHHHHHHHHhcCCCCCc
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~-~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (232)
...++||+.++|++|+ .+++++|+|++....++..+ +++++.. +|+.+++++++...||. |.+++++++.+|++
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il-~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~ 117 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVL-DLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSN 117 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHH-HHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhc
Confidence 4578999999999998 56999999999999999888 8888854 46999999999988986 89999999999999
Q ss_pred EEEEeCchhhhhhhhhcCCEE
Q 026853 168 SLVIEDSVIGVVAGKAAGMEV 188 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G~~~ 188 (232)
|++|||+.+|+.++.++|+..
T Consensus 118 ~i~i~Ds~~~~~aa~~ngI~i 138 (148)
T smart00577 118 VIIIDDSPDSWPFHPENLIPI 138 (148)
T ss_pred EEEEECCHHHhhcCccCEEEe
Confidence 999999999999999999543
No 93
>PRK08238 hypothetical protein; Validated
Probab=99.59 E-value=5.5e-14 Score=112.78 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=80.8
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcE
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (232)
..+..|++.+.+++++++|++++++|++....++..+ +++|+ ||.++++++....||+++. ..+.+.++ .+++
T Consensus 70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~-~~lGl---Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~~ 142 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVA-AHLGL---FDGVFASDGTTNLKGAAKA-AALVEAFG--ERGF 142 (479)
T ss_pred hCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCC---CCEEEeCCCccccCCchHH-HHHHHHhC--ccCe
Confidence 4567899999999999999999999999999999888 88887 8999999887767666543 33445555 3568
Q ss_pred EEEeCchhhhhhhhhcCCEEEEeCCC
Q 026853 169 LVIEDSVIGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 169 ~~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (232)
+++||+.+|+.+++.+| ..+.|+.+
T Consensus 143 ~yvGDS~~Dlp~~~~A~-~av~Vn~~ 167 (479)
T PRK08238 143 DYAGNSAADLPVWAAAR-RAIVVGAS 167 (479)
T ss_pred eEecCCHHHHHHHHhCC-CeEEECCC
Confidence 99999999999999999 66788763
No 94
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.59 E-value=2.5e-15 Score=115.73 Aligned_cols=90 Identities=22% Similarity=0.152 Sum_probs=81.5
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhh----cCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCc
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ----HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~----~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (232)
+++++.++|..|+++|+.++|+|++....+...+ ++ +++..+|+.+... .||++..+..+++++|+.+++
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l-~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~~ 105 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVF-ERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNLGTDS 105 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH-HhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCCCcCc
Confidence 4789999999999999999999999999999888 77 7888888887544 579999999999999999999
Q ss_pred EEEEeCchhhhhhhhhcCCE
Q 026853 168 SLVIEDSVIGVVAGKAAGME 187 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G~~ 187 (232)
++||||+..|+.++++++..
T Consensus 106 ~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 106 FLFIDDNPAERANVKITLPV 125 (320)
T ss_pred EEEECCCHHHHHHHHHHCCC
Confidence 99999999999999997754
No 95
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.59 E-value=9.9e-16 Score=105.51 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=85.4
Q ss_pred HHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhh
Q 026853 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (232)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di 178 (232)
.+++|+++|++++|+||.....+...+ +++|+..+|+. .+|++..+.++++++++++++++||||+.||+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l-~~~gi~~~~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~ 105 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRC-KTLGITHLYQG---------QSNKLIAFSDILEKLALAPENVAYIGDDLIDW 105 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHH-HHcCCCEEEec---------ccchHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence 799999999999999999999888888 88998877653 36889999999999999999999999999999
Q ss_pred hhhhhcCCEEEEeCCCCCccccchhhhHhhhhcc
Q 026853 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL 212 (232)
Q Consensus 179 ~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~ 212 (232)
.+++.+|+. +.+.... +..+..+++++.+..
T Consensus 106 ~~~~~ag~~-~~v~~~~--~~~~~~a~~i~~~~~ 136 (154)
T TIGR01670 106 PVMEKVGLS-VAVADAH--PLLIPRADYVTRIAG 136 (154)
T ss_pred HHHHHCCCe-EecCCcC--HHHHHhCCEEecCCC
Confidence 999999987 6665532 345666777776554
No 96
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.59 E-value=7.4e-16 Score=112.49 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=70.0
Q ss_pred EEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEE
Q 026853 110 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189 (232)
Q Consensus 110 ~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i 189 (232)
+++++..........+ +..++...... ...+....+..+..+++.+++.+|++++++++|||+.||+.|++.+| +
T Consensus 110 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag---~ 184 (215)
T TIGR01487 110 VIMREGKDVDEVREII-KERGLNLVDSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVG---F 184 (215)
T ss_pred EEecCCccHHHHHHHH-HhCCeEEEecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCC---C
Confidence 3344554555555566 55554332221 11233456677888999999999999999999999999999999999 5
Q ss_pred EeCCCCCccccchhhhHhhhhcc
Q 026853 190 AVPSLPKQTHRYTAADEVINSLL 212 (232)
Q Consensus 190 ~v~~~~~~~~~~~~~~~~~~~l~ 212 (232)
.+.+++..++.+..|++++.+..
T Consensus 185 ~vam~na~~~~k~~A~~v~~~~~ 207 (215)
T TIGR01487 185 KVAVANADDQLKEIADYVTSNPY 207 (215)
T ss_pred eEEcCCccHHHHHhCCEEcCCCC
Confidence 56666668888888888886543
No 97
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.58 E-value=2.3e-13 Score=98.41 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=69.5
Q ss_pred cCCCCCcHHHHHH-HHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeeccc----ccC----CCCCCHHHHHHHHH
Q 026853 89 KVKALPGANRLIK-HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD----EVR----TGKPSPDIFLEAAK 159 (232)
Q Consensus 89 ~~~~~~~~~~~l~-~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~----~~~----~~kp~~~~~~~~~~ 159 (232)
...++|++.+.|+ .++++|++++|+|+.....++... +..++... +.++++. +.+ ...-..+-..++.+
T Consensus 92 ~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia-~~~~~~~~-~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~ 169 (210)
T TIGR01545 92 KVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVY-FDSNFIHR-LNLIASQIERGNGGWVLPLRCLGHEKVAQLEQ 169 (210)
T ss_pred hCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHH-Hhcccccc-CcEEEEEeEEeCCceEcCccCCChHHHHHHHH
Confidence 3468999999996 778889999999999999888777 65444222 2333332 101 11111233444445
Q ss_pred hcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 160 ~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
.++.+.+.+.++|||.+|+.|...+|.+ ++|+.
T Consensus 170 ~~~~~~~~~~aYsDS~~D~pmL~~a~~~-~~Vnp 202 (210)
T TIGR01545 170 KIGSPLKLYSGYSDSKQDNPLLAFCEHR-WRVSK 202 (210)
T ss_pred HhCCChhheEEecCCcccHHHHHhCCCc-EEECc
Confidence 5565667788999999999999999966 55554
No 98
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.58 E-value=9.8e-16 Score=115.86 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=56.9
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhH--hhhh
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE--VINS 210 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~--~~~~ 210 (232)
+....+-.|..+++.+++.+|++++++++|||+.||++|.+.+| ..|++++..++.+..|++ ++.+
T Consensus 181 eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag---~~vAm~Na~~~vK~~A~~~~v~~~ 248 (272)
T PRK15126 181 EVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVG---RGFIMGNAMPQLRAELPHLPVIGH 248 (272)
T ss_pred EeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcC---CceeccCChHHHHHhCCCCeecCC
Confidence 44567778899999999999999999999999999999999999 677777778888888875 5544
No 99
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.57 E-value=2.2e-15 Score=113.88 Aligned_cols=69 Identities=19% Similarity=0.118 Sum_probs=60.5
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccC
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~e 213 (232)
+....+..|..+++.+++.+|++++++++|||+.||++|.+.+| +.|++++..++.+..|++++.+..+
T Consensus 189 eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag---~~vAm~NA~~~vK~~A~~vt~~n~~ 257 (270)
T PRK10513 189 EILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAG---VGVAMGNAIPSVKEVAQFVTKSNLE 257 (270)
T ss_pred EEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCC---ceEEecCccHHHHHhcCeeccCCCc
Confidence 45567788899999999999999999999999999999999999 6677777888889999999876543
No 100
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.57 E-value=6.4e-14 Score=107.93 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=60.6
Q ss_pred CCCCCCHHHHHHHHHhc--------CC-----CCCcEEEEeCch-hhhhhhhhcCCEEEEeCCCCCccc-c--chhhhHh
Q 026853 145 RTGKPSPDIFLEAAKRL--------NM-----EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTH-R--YTAADEV 207 (232)
Q Consensus 145 ~~~kp~~~~~~~~~~~~--------~~-----~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~-~--~~~~~~~ 207 (232)
..+||++..|+.+++.+ +. ++++++||||+. +||.+|+++|+.+++|.+|..... . ...++++
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~v 309 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLI 309 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEE
Confidence 35999999999988877 43 457999999999 999999999999999998733322 2 3458899
Q ss_pred hhhccCcCcccc
Q 026853 208 INSLLDLRPEKW 219 (232)
Q Consensus 208 ~~~l~el~~~l~ 219 (232)
++|+.|+...++
T Consensus 310 v~~l~e~~~~i~ 321 (321)
T TIGR01456 310 VNDVFDAVTKIL 321 (321)
T ss_pred ECCHHHHHHHhC
Confidence 999999877653
No 101
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.56 E-value=3.8e-13 Score=99.67 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=79.7
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcccccee------ecccccCCCCCCH---------HH
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI------VGSDEVRTGKPSP---------DI 153 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~------~~~~~~~~~kp~~---------~~ 153 (232)
.+.+.||+.++++.|+++|++++|+|++....++..+ +++++...+..+ +..+....++|.| ..
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL-~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v 197 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVL-RQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDV 197 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH-HHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHH
Confidence 5789999999999999999999999999999999999 878886555555 3334444556666 56
Q ss_pred HHHHHHhcC--CCCCcEEEEeCchhhhhhhhhc
Q 026853 154 FLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAA 184 (232)
Q Consensus 154 ~~~~~~~~~--~~~~~~~~vgD~~~Di~~a~~~ 184 (232)
++.+.+.++ .++++|++||||.+|+.||..+
T Consensus 198 ~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 198 ALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred HHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 667888888 8999999999999999998876
No 102
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.56 E-value=7.6e-13 Score=101.12 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=85.8
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhc-C-------CccccceeecccccC---------------
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH-G-------WNESFSVIVGSDEVR--------------- 145 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~-~-------l~~~~~~~~~~~~~~--------------- 145 (232)
.+...|++.++|+.|+++|++++|+||+....+...+ +++ + |..+||.++++...+
T Consensus 182 yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im-~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGM-KYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred HhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCC
Confidence 3567999999999999999999999999999999888 764 6 899999988764211
Q ss_pred --CCCCC-------H-----HHHHHHHHhcCCCCCcEEEEeCch-hhhhhhh-hcCCEEEEeCC
Q 026853 146 --TGKPS-------P-----DIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS 193 (232)
Q Consensus 146 --~~kp~-------~-----~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~-~~G~~~i~v~~ 193 (232)
..++. + .-.....+.++++++++++|||+. .|+..++ .+||.+++|..
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 01111 1 125678888999999999999999 8999998 99999999976
No 103
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.55 E-value=2.3e-14 Score=105.76 Aligned_cols=50 Identities=28% Similarity=0.513 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcE-EEEeCch-hhhhhhhhcCCEEEEeCCC
Q 026853 145 RTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSV-IGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~-~~vgD~~-~Di~~a~~~G~~~i~v~~~ 194 (232)
..+||++..++.+++++++.++++ +||||+. +||.+|+++|+.+++|.+|
T Consensus 185 ~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 185 VVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred eecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 367999999999999999999887 9999999 8999999999999999764
No 104
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.53 E-value=3.6e-14 Score=114.29 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=78.8
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCch------------HHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHR------------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 159 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~------------~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~ 159 (232)
++|++.+.|+.|++.|++++|+||... ..+...+ +.+|+. |+.+++.......||++.++..+++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL-~~lgip--fdviia~~~~~~RKP~pGm~~~a~~ 274 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIV-AKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKE 274 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHH-HHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 689999999999999999999999765 3456666 777874 8888888777889999999999999
Q ss_pred hcC----CCCCcEEEEeCchhhhhhhhhcCC
Q 026853 160 RLN----MEPSSSLVIEDSVIGVVAGKAAGM 186 (232)
Q Consensus 160 ~~~----~~~~~~~~vgD~~~Di~~a~~~G~ 186 (232)
+++ +++++++||||...|+.+++.+|-
T Consensus 275 ~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 275 EANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred hcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 985 899999999999988877666663
No 105
>PRK10976 putative hydrolase; Provisional
Probab=99.53 E-value=5.8e-14 Score=105.91 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=57.6
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhh--Hhhhhcc
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD--EVINSLL 212 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~--~~~~~l~ 212 (232)
+.+..+-.|..+++.+++.+|++++++++|||+.||++|.+.+| +.|++++..++.+..|+ +++.+..
T Consensus 183 eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag---~~vAm~NA~~~vK~~A~~~~v~~~n~ 252 (266)
T PRK10976 183 EVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAG---KGCIMGNAHQRLKDLLPELEVIGSNA 252 (266)
T ss_pred EEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcC---CCeeecCCcHHHHHhCCCCeecccCc
Confidence 44556778899999999999999999999999999999999999 66777777888888876 6665543
No 106
>PLN02887 hydrolase family protein
Probab=99.52 E-value=6.4e-15 Score=120.20 Aligned_cols=69 Identities=16% Similarity=0.086 Sum_probs=60.8
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccC
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~e 213 (232)
+.+..+..|..+++.+++.+|++++++++|||+.||++|.+.+| +.|++++..++.+..|++++.+..|
T Consensus 500 EI~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG---~gVAMgNA~eeVK~~Ad~VT~sNdE 568 (580)
T PLN02887 500 EIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLAS---LGVALSNGAEKTKAVADVIGVSNDE 568 (580)
T ss_pred EEecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCC---CEEEeCCCCHHHHHhCCEEeCCCCc
Confidence 44567788899999999999999999999999999999999999 6777778889999999998876543
No 107
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=92.39 Aligned_cols=95 Identities=24% Similarity=0.384 Sum_probs=83.7
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcE
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (232)
.....|.+++-+..++..|++++|+||+....+.... +.+|+.- + ....||.+..++++++++++++++|
T Consensus 44 ~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~-~~l~v~f----i-----~~A~KP~~~~fr~Al~~m~l~~~~v 113 (175)
T COG2179 44 NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAA-EKLGVPF----I-----YRAKKPFGRAFRRALKEMNLPPEEV 113 (175)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhh-hhcCCce----e-----ecccCccHHHHHHHHHHcCCChhHE
Confidence 3456788888999999999999999999988888777 7777633 2 2458999999999999999999999
Q ss_pred EEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 169 LVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 169 ~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
+||||.. .|+.++..+|+.+|.|..
T Consensus 114 vmVGDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 114 VMVGDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred EEEcchhhhhhhcccccCcEEEEEEE
Confidence 9999999 899999999999999976
No 108
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.51 E-value=3.8e-13 Score=101.68 Aligned_cols=54 Identities=11% Similarity=-0.010 Sum_probs=43.9
Q ss_pred cCCCCCCHHHHHHHHHhcCCCC-CcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccc
Q 026853 144 VRTGKPSPDIFLEAAKRLNMEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 201 (232)
Q Consensus 144 ~~~~kp~~~~~~~~~~~~~~~~-~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~ 201 (232)
...+ .+..+++++++.+|+++ +++++|||+.||+.|++.+|+. +.+++..++.+
T Consensus 186 ~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~---vam~NA~~~~k 240 (273)
T PRK00192 186 LGGG-DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIA---VVVPGPDGPNP 240 (273)
T ss_pred eCCC-CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCee---EEeCCCCCCCc
Confidence 3445 67889999999999999 9999999999999999999944 44444455544
No 109
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.50 E-value=9.6e-14 Score=95.59 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=72.8
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCEEEEeCC-chHHHHHHHhhhcCCc----------cccceeecccccCCCCCCHHHHHH
Q 026853 88 CKVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWN----------ESFSVIVGSDEVRTGKPSPDIFLE 156 (232)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~~~l~----------~~~~~~~~~~~~~~~kp~~~~~~~ 156 (232)
..+.++|++..+|..|+..|+++++.|-. .++.+...| +.+++. .+|+..-.. .+ ++..-++.
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L-~~l~i~~~~~~~~~~~~~F~~~eI~----~g-sK~~Hf~~ 115 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELL-KLLEIDDADGDGVPLIEYFDYLEIY----PG-SKTTHFRR 115 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHH-HHTT-C----------CCECEEEES----SS--HHHHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHH-HhcCCCccccccccchhhcchhhee----cC-chHHHHHH
Confidence 45789999999999999999999999955 566777777 889998 677664222 22 66788999
Q ss_pred HHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcc
Q 026853 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT 198 (232)
Q Consensus 157 ~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~ 198 (232)
+.+..|++.++++||+|...++...+..|+.++.+.+|-...
T Consensus 116 i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~ 157 (169)
T PF12689_consen 116 IHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWD 157 (169)
T ss_dssp HHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HH
T ss_pred HHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHH
Confidence 999999999999999999999999999999999999865443
No 110
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.50 E-value=9.4e-14 Score=95.95 Aligned_cols=211 Identities=16% Similarity=0.190 Sum_probs=123.2
Q ss_pred ccccEEEEeCCCcccccHHHHHHHHHHHHHHcC-CCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHH---HHHHH
Q 026853 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYG-KEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVN---EVYSM 82 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 82 (232)
+.++.+++|+-|||..+......+.. +++++. .+..-.......+... ......+.++|++.+.+++.. ...++
T Consensus 5 ~~v~gvLlDlSGtLh~e~~avpga~e-Al~rLr~~~~kVkFvTNttk~Sk-~~l~~rL~rlgf~v~eeei~tsl~aa~~~ 82 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIEDAAVPGAVE-ALKRLRDQHVKVKFVTNTTKESK-RNLHERLQRLGFDVSEEEIFTSLPAARQY 82 (262)
T ss_pred cccceEEEeccceEecccccCCCHHH-HHHHHHhcCceEEEEecCcchhH-HHHHHHHHHhCCCccHHHhcCccHHHHHH
Confidence 46899999999999988655444333 333332 2222222223333333 333444567888877666543 22333
Q ss_pred HHhh--hccCCCCCcHHHHHHHHHhCCCCEEEEeCC-ch----HHHHHH---Hhhhc-------CCcccccee-------
Q 026853 83 FSDH--LCKVKALPGANRLIKHLSCHGVPMALASNS-HR----ATIESK---ISYQH-------GWNESFSVI------- 138 (232)
Q Consensus 83 ~~~~--~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~-~~----~~~~~~---l~~~~-------~l~~~~~~~------- 138 (232)
+.+. .....+.+++.+-+...... .+-+++-+- +. ..+.+. |.+.- |-..|+...
T Consensus 83 ~~~~~lrP~l~v~d~a~~dF~gidTs-~pn~VViglape~F~y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgp 161 (262)
T KOG3040|consen 83 LEENQLRPYLIVDDDALEDFDGIDTS-DPNCVVIGLAPEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGP 161 (262)
T ss_pred HHhcCCCceEEEcccchhhCCCccCC-CCCeEEEecCcccccHHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCc
Confidence 3321 12233445555555544444 222222221 11 111111 10100 000111111
Q ss_pred ----------ecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEEeCCCCCcc----ccchh
Q 026853 139 ----------VGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT----HRYTA 203 (232)
Q Consensus 139 ----------~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~----~~~~~ 203 (232)
...+....+||++..|+.++..+|++|++++||||.. .|+.+|+.+||..+.|.+|.-++ +....
T Consensus 162 G~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~ 241 (262)
T KOG3040|consen 162 GPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVP 241 (262)
T ss_pred hHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCC
Confidence 1112234789999999999999999999999999999 69999999999999999975444 22567
Q ss_pred hhHhhhhccCcCccccC
Q 026853 204 ADEVINSLLDLRPEKWG 220 (232)
Q Consensus 204 ~~~~~~~l~el~~~l~~ 220 (232)
|+.+.+++.|...++..
T Consensus 242 p~~~~d~f~~AVd~I~q 258 (262)
T KOG3040|consen 242 PDLTADNFADAVDLIIQ 258 (262)
T ss_pred cchhhhhHHHHHHHHHh
Confidence 88899999998887763
No 111
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.49 E-value=3.6e-14 Score=100.59 Aligned_cols=108 Identities=18% Similarity=0.224 Sum_probs=86.8
Q ss_pred HHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhh
Q 026853 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (232)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di 178 (232)
.++.|+++|++++|+|+.....+...+ +.+++..+|+ ..++++..+..+++++|+++++++||||+.+|+
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l-~~lgl~~~f~---------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~ 125 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRM-TTLGITHLYQ---------GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDW 125 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHH-HHcCCceeec---------CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 567777899999999999999888888 8888877664 135678999999999999999999999999999
Q ss_pred hhhhhcCCEEEEeCCCCCccccchhhhHhhh------hccCcCcccc
Q 026853 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVIN------SLLDLRPEKW 219 (232)
Q Consensus 179 ~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~------~l~el~~~l~ 219 (232)
.+++.+|+.+ .+. +..+.....+++++. .+.|+.+.++
T Consensus 126 ~~a~~aG~~~-~v~--~~~~~~~~~a~~v~~~~~g~g~~~el~~~i~ 169 (183)
T PRK09484 126 PVMEKVGLSV-AVA--DAHPLLLPRADYVTRIAGGRGAVREVCDLLL 169 (183)
T ss_pred HHHHHCCCeE-ecC--ChhHHHHHhCCEEecCCCCCCHHHHHHHHHH
Confidence 9999999984 343 233343566777775 5777766654
No 112
>PTZ00445 p36-lilke protein; Provisional
Probab=99.49 E-value=5.6e-13 Score=93.39 Aligned_cols=136 Identities=13% Similarity=0.206 Sum_probs=103.2
Q ss_pred HHHHHHHHHcCCCccHHhHHHHHHHHHHhhhccC---------CCCCcHHHHHHHHHhCCCCEEEEeCCchH--------
Q 026853 57 EEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV---------KALPGANRLIKHLSCHGVPMALASNSHRA-------- 119 (232)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~l~~~g~~~~i~s~~~~~-------- 119 (232)
..+-..+++.|+..-.-++...+.......+... .+.|+++.++..|++.|++++|||-++..
T Consensus 32 ~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~ 111 (219)
T PTZ00445 32 DKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRP 111 (219)
T ss_pred HHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCc
Confidence 4455566777777555555555555333333222 26788999999999999999999987664
Q ss_pred -------HHHHHHhhhcCCccccceeecccc-----------cCCCCCCHHH--H--HHHHHhcCCCCCcEEEEeCchhh
Q 026853 120 -------TIESKISYQHGWNESFSVIVGSDE-----------VRTGKPSPDI--F--LEAAKRLNMEPSSSLVIEDSVIG 177 (232)
Q Consensus 120 -------~~~~~l~~~~~l~~~~~~~~~~~~-----------~~~~kp~~~~--~--~~~~~~~~~~~~~~~~vgD~~~D 177 (232)
.++..| +..+....+..+++... ++..||+|+. | ++++++.|+.|++++||+|+..+
T Consensus 112 ~~Isg~~li~~~l-k~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~N 190 (219)
T PTZ00445 112 RYISGDRMVEAAL-KKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNN 190 (219)
T ss_pred ceechHHHHHHHH-HhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHH
Confidence 355566 65566666666654432 3677999999 8 99999999999999999999999
Q ss_pred hhhhhhcCCEEEEeCC
Q 026853 178 VVAGKAAGMEVVAVPS 193 (232)
Q Consensus 178 i~~a~~~G~~~i~v~~ 193 (232)
+.+|+++|+.++.+..
T Consensus 191 VeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 191 CKNALKEGYIALHVTG 206 (219)
T ss_pred HHHHHHCCCEEEEcCC
Confidence 9999999999999976
No 113
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.47 E-value=3.5e-13 Score=98.78 Aligned_cols=76 Identities=26% Similarity=0.341 Sum_probs=65.6
Q ss_pred cCCCCCCHHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEEeCCCCCcc--------ccchhhhHhhhhccCc
Q 026853 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT--------HRYTAADEVINSLLDL 214 (232)
Q Consensus 144 ~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~--------~~~~~~~~~~~~l~el 214 (232)
.-.+||++.++..+++++++.|++++||||+. .||..++++|+++++|-+|-... +.+..|||.++++.++
T Consensus 220 ~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d~ 299 (306)
T KOG2882|consen 220 IVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGDL 299 (306)
T ss_pred eecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHHH
Confidence 44789999999999999999999999999999 79999999999999999975432 2245689999999998
Q ss_pred Ccccc
Q 026853 215 RPEKW 219 (232)
Q Consensus 215 ~~~l~ 219 (232)
.+.+.
T Consensus 300 ~~~~~ 304 (306)
T KOG2882|consen 300 LPLLN 304 (306)
T ss_pred hhhcc
Confidence 77654
No 114
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.43 E-value=2.7e-13 Score=102.42 Aligned_cols=46 Identities=4% Similarity=-0.111 Sum_probs=41.6
Q ss_pred cccCCCCCCHHHHHHHHHhcCC---CCCcEEEEeCchhhhhhhhhcCCE
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNM---EPSSSLVIEDSVIGVVAGKAAGME 187 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~---~~~~~~~vgD~~~Di~~a~~~G~~ 187 (232)
+.+..+-.|..+++.+++.+|+ +++++++|||+.||++|.+.+|+.
T Consensus 180 Ei~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~g 228 (271)
T PRK03669 180 HVLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYA 228 (271)
T ss_pred EEecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEE
Confidence 4456778889999999999999 999999999999999999999944
No 115
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.41 E-value=1.2e-12 Score=96.96 Aligned_cols=61 Identities=11% Similarity=-0.087 Sum_probs=51.5
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhh
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD 205 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~ 205 (232)
+....+.+|+.+++.++++++++++++++|||+.||+.|++.+|.. +.+++..++.+..++
T Consensus 152 ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~---iav~na~~~~k~~a~ 212 (236)
T TIGR02471 152 DVLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLG---VVVGNHDPELEGLRH 212 (236)
T ss_pred EEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcE---EEEcCCcHHHHHhhc
Confidence 4566788999999999999999999999999999999999999944 445556777777777
No 116
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.40 E-value=3.6e-12 Score=88.24 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=93.6
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCc---------------hHHHHHHHhhhcCCccccceeecc-----cccCCCCC
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSH---------------RATIESKISYQHGWNESFSVIVGS-----DEVRTGKP 149 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~---------------~~~~~~~l~~~~~l~~~~~~~~~~-----~~~~~~kp 149 (232)
..+.|++.+.+..|++.|++++++||.. ...+...| +..|. .|+.++.. +.+..+||
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l-~~~gv--~id~i~~Cph~p~~~c~cRKP 106 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKIL-ASQGV--KIDGILYCPHHPEDNCDCRKP 106 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCcccCC
Confidence 4688999999999999999999999952 12233333 33343 56666544 23568999
Q ss_pred CHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc-chhhhHhhhhccCcC
Q 026853 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDLR 215 (232)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~~~~~~~~l~el~ 215 (232)
++..++.+++++++++++.++|||...|+++|.++|+..+.+.++...... ....+++.+++.++.
T Consensus 107 ~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (181)
T COG0241 107 KPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEFA 173 (181)
T ss_pred ChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHHH
Confidence 999999999999999999999999999999999999998888885333222 225566666666665
No 117
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.40 E-value=2.7e-12 Score=92.08 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=62.3
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcccc--ceeecccc-------cCCCC--CCHHHHHHH---HH
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF--SVIVGSDE-------VRTGK--PSPDIFLEA---AK 159 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~--~~~~~~~~-------~~~~k--p~~~~~~~~---~~ 159 (232)
+++.++++.+++.|++++|+|++....+...+ +.+++.... ..-+.... ..... -+...++.+ ..
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~-~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~ 170 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIA-ERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDE 170 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHH-HHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhh
Confidence 56669999999999999999999999998888 788876521 21110000 00000 245566666 44
Q ss_pred hcCCCCCcEEEEeCchhhhhhhh
Q 026853 160 RLNMEPSSSLVIEDSVIGVVAGK 182 (232)
Q Consensus 160 ~~~~~~~~~~~vgD~~~Di~~a~ 182 (232)
. +.....+++||||.+|+.|++
T Consensus 171 ~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 171 E-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp H-THTCCEEEEEESSGGGHHHHH
T ss_pred c-CCCCCeEEEEECCHHHHHHhC
Confidence 4 888999999999999999986
No 118
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.39 E-value=4.4e-13 Score=100.57 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=55.6
Q ss_pred ccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccC
Q 026853 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (232)
Q Consensus 143 ~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~e 213 (232)
....+..|..+++.+++.++++++++++|||+.||+.|++.+|+. +.+++..+..+..|++++.+..+
T Consensus 182 I~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~---~a~~na~~~~k~~a~~~~~~n~~ 249 (256)
T TIGR00099 182 ITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYG---VAMGNADEELKALADYVTDSNNE 249 (256)
T ss_pred ecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCce---eEecCchHHHHHhCCEEecCCCC
Confidence 445677889999999999999999999999999999999999965 34445566667788888766443
No 119
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.37 E-value=6.9e-13 Score=98.50 Aligned_cols=99 Identities=23% Similarity=0.389 Sum_probs=81.0
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcccccee--ecccccCCCCCCHHHHHHHHHhcCCC-CCcEE
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI--VGSDEVRTGKPSPDIFLEAAKRLNME-PSSSL 169 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~--~~~~~~~~~kp~~~~~~~~~~~~~~~-~~~~~ 169 (232)
++++.++++.+.++|+++ ++||.+.......+ ...+...++..+ .+.+....+||+|..++.++++++.. +++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~-~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGI-YRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCc-eEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 578888999998889987 88998877665455 666666666644 45556668999999999999999975 57899
Q ss_pred EEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 170 VIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 170 ~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
||||+. +|+.+|+++|+.+++|.+
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred EECCCcHHHHHHHHHCCCeEEEEeC
Confidence 999995 999999999999999853
No 120
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.36 E-value=1.7e-11 Score=85.74 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=108.6
Q ss_pred cccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcC-CChHHHHHHHHHHcCCC-ccHHhHHHHHHHHHHh
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD 85 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (232)
+-.+++||+|-|+++.+.. .++. ..++...-...++.... ..+.+.+.+++++++-. ...++ ..+
T Consensus 12 ~ril~~FDFD~TIid~dSD--~wVv---~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~--------ik~ 78 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSD--NWVV---DELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAE--------IKQ 78 (256)
T ss_pred CcEEEEEecCceeecCCcc--hHHH---HhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHH--------HHH
Confidence 4578999999999976431 1222 22332222222222222 22344555555555422 12222 233
Q ss_pred hhccCCCCCcHHHHHHHHHhCCC-CEEEEeCCchHHHHHHHhhhcCCccccceeeccccc------------C-------
Q 026853 86 HLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDEV------------R------- 145 (232)
Q Consensus 86 ~~~~~~~~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~------------~------- 145 (232)
.+..++..||+.++++.+++.|. .+.|+|+.....++..| +.+++...|+.+++.... .
T Consensus 79 ~~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~L-ea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~ 157 (256)
T KOG3120|consen 79 VLRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEIL-EAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNL 157 (256)
T ss_pred HHhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHH-HHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCc
Confidence 34568999999999999999985 99999999999999999 999999988877653211 0
Q ss_pred --CCCCCHHHHHHHHH---hcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 146 --TGKPSPDIFLEAAK---RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 146 --~~kp~~~~~~~~~~---~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
..-.++..+.+... +-|+..++.+|+||+.||+.........-+...+
T Consensus 158 CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampR 210 (256)
T KOG3120|consen 158 CPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPR 210 (256)
T ss_pred CchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceeccc
Confidence 11123344444332 2368888999999999999987665544444444
No 121
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.34 E-value=2.1e-12 Score=94.80 Aligned_cols=46 Identities=13% Similarity=-0.005 Sum_probs=40.1
Q ss_pred cCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEE
Q 026853 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189 (232)
Q Consensus 144 ~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i 189 (232)
...+..++.+++.+++.+|++++++++|||+.||+.|++.+|..++
T Consensus 174 ~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 174 LGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred ecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 3445557789999999999999999999999999999999997644
No 122
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.33 E-value=2.1e-13 Score=101.98 Aligned_cols=67 Identities=19% Similarity=0.113 Sum_probs=57.3
Q ss_pred cCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccC
Q 026853 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (232)
Q Consensus 144 ~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~e 213 (232)
...+-.+..+++.+++.+|++++++++|||+.||+.|++.+| ..+.+++..+..+..|++++.+-.+
T Consensus 181 ~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~---~~~am~na~~~~k~~a~~i~~~~~~ 247 (254)
T PF08282_consen 181 TPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAG---YSVAMGNATPELKKAADYITPSNND 247 (254)
T ss_dssp EETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSS---EEEEETTS-HHHHHHSSEEESSGTC
T ss_pred eeCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcC---eEEEEcCCCHHHHHhCCEEecCCCC
Confidence 346677889999999999999999999999999999999999 6666667788888899888877665
No 123
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.32 E-value=9.6e-12 Score=92.39 Aligned_cols=90 Identities=20% Similarity=0.311 Sum_probs=75.0
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHH--HHHhhhcCCcc-ccceeecccccCCCCCCHHHHHHHHHhcCCCCCc
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~--~~l~~~~~l~~-~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (232)
.++||+.++|++|+++|++++++||..+.... ..+ +++|+.. .|+.++++..... ..+..++++++.++++
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L-~~~gl~~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~~~ 97 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTL-KSLGINADLPEMIISSGEIAV-----QMILESKKRFDIRNGI 97 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHH-HHCCCCccccceEEccHHHHH-----HHHHhhhhhccCCCce
Confidence 47899999999999999999999999876654 667 8899987 8999998875432 4666777888899999
Q ss_pred EEEEeCchhhhhhhhhcCC
Q 026853 168 SLVIEDSVIGVVAGKAAGM 186 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G~ 186 (232)
+++|||+..|+.....+|.
T Consensus 98 ~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 98 IYLLGHLENDIINLMQCYT 116 (242)
T ss_pred EEEeCCcccchhhhcCCCc
Confidence 9999999999888766664
No 124
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.29 E-value=1.7e-10 Score=85.66 Aligned_cols=85 Identities=13% Similarity=0.188 Sum_probs=65.6
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHH---HHHHHhhhcCCcccc-ceeecccccCCCCCCHHHHHHHHHhcCCC
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~l~~~~-~~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (232)
...++||+.++++.|+++|++++++||..... ....+ +.+|+...+ +.++..+. .++++.....+.+.+++
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L-kk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I- 190 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL-KRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI- 190 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH-HHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE-
Confidence 45789999999999999999999999987433 44666 778887643 55555432 34566777777787777
Q ss_pred CCcEEEEeCchhhhhhh
Q 026853 165 PSSSLVIEDSVIGVVAG 181 (232)
Q Consensus 165 ~~~~~~vgD~~~Di~~a 181 (232)
+++|||..+|+..+
T Consensus 191 ---vl~vGD~~~Df~~~ 204 (266)
T TIGR01533 191 ---VLLFGDNLLDFDDF 204 (266)
T ss_pred ---EEEECCCHHHhhhh
Confidence 89999999999653
No 125
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.28 E-value=3.4e-11 Score=83.04 Aligned_cols=94 Identities=20% Similarity=0.318 Sum_probs=66.0
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCc---h-----------HHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSH---R-----------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA 157 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~---~-----------~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~ 157 (232)
..+++.+.|++|.+.|+.++|+||.. . ..+...+ +.+++. +....+...-..+||.+.++..+
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il-~~l~ip--~~~~~a~~~d~~RKP~~GM~~~~ 106 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENIL-KELGIP--IQVYAAPHKDPCRKPNPGMWEFA 106 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHH-HHCTS---EEEEECGCSSTTSTTSSHHHHHH
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHH-HHcCCc--eEEEecCCCCCCCCCchhHHHHH
Confidence 45689999999999999999999872 2 1123333 445554 33334444447899999999999
Q ss_pred HHhcC----CCCCcEEEEeCc-----------hhhhhhhhhcCCEE
Q 026853 158 AKRLN----MEPSSSLVIEDS-----------VIGVVAGKAAGMEV 188 (232)
Q Consensus 158 ~~~~~----~~~~~~~~vgD~-----------~~Di~~a~~~G~~~ 188 (232)
++.++ ++.++.+||||. ..|..-|.++|++.
T Consensus 107 ~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 107 LKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp CCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred HHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 99987 488999999996 57899999999764
No 126
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.26 E-value=4.8e-12 Score=94.88 Aligned_cols=66 Identities=9% Similarity=-0.068 Sum_probs=50.9
Q ss_pred cccCCCCCCHHHHHHHHHhcCCC--CCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCc---cccchh--h-hHhhhh
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNME--PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ---THRYTA--A-DEVINS 210 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~--~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~---~~~~~~--~-~~~~~~ 210 (232)
+....+..+..+++++++.++++ .+++++|||+.||+.|++.+| +.|.+++.. ++.+.. + ++++.+
T Consensus 169 ei~~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag---~~vam~Na~~~~~~lk~~~~a~~~vt~~ 242 (256)
T TIGR01486 169 HVLGAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVD---LAVVVPGPNGPNVSLKPGDPGSFLLTPA 242 (256)
T ss_pred EEecCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCC---EEEEeCCCCCCccccCccCCCcEEEcCC
Confidence 34456778889999999999999 999999999999999999999 455554444 345554 3 366654
No 127
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.25 E-value=1.8e-10 Score=85.97 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=45.1
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
+....+.+++.+++.+++.++++++++++|||+.||+.|++.+|..++.+.+
T Consensus 160 di~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~n 211 (249)
T TIGR01485 160 DILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSN 211 (249)
T ss_pred EEEeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECC
Confidence 4566788999999999999999999999999999999999996655566644
No 128
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.23 E-value=1.1e-11 Score=101.96 Aligned_cols=115 Identities=21% Similarity=0.232 Sum_probs=89.5
Q ss_pred cCCCCCcHHHHHHHHHhCCC-CEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCc
Q 026853 89 KVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (232)
..+++||+.+.+++|++.|+ +++++|+.....+...+ +++|+..+|..+. +.++ ..++++++...++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~-~~lgi~~~f~~~~-------p~~K----~~~i~~l~~~~~~ 427 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVA-RELGIDEVHAELL-------PEDK----LEIVKELREKYGP 427 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHH-HHcCChhhhhccC-------cHHH----HHHHHHHHhcCCE
Confidence 34688999999999999999 99999999999999888 8899987765432 1222 4455666666689
Q ss_pred EEEEeCchhhhhhhhhcCCEEEEeCCC-CCccccchhhhHhh--hhccCcCccc
Q 026853 168 SLVIEDSVIGVVAGKAAGMEVVAVPSL-PKQTHRYTAADEVI--NSLLDLRPEK 218 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G~~~i~v~~~-~~~~~~~~~~~~~~--~~l~el~~~l 218 (232)
++||||+.||+.+++.+| +.+.+| +.....+..+|.++ ++++++...+
T Consensus 428 v~~vGDg~nD~~al~~A~---vgia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i 478 (536)
T TIGR01512 428 VAMVGDGINDAPALAAAD---VGIAMGASGSDVAIETADVVLLNDDLSRLPQAI 478 (536)
T ss_pred EEEEeCCHHHHHHHHhCC---EEEEeCCCccHHHHHhCCEEEECCCHHHHHHHH
Confidence 999999999999999999 566665 33344466788887 7888876543
No 129
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.23 E-value=1.7e-10 Score=79.27 Aligned_cols=92 Identities=24% Similarity=0.228 Sum_probs=63.1
Q ss_pred CCCcHHHHHHHHHhCCC--CEEEEeCCc-------hHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcC
Q 026853 92 ALPGANRLIKHLSCHGV--PMALASNSH-------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~--~~~i~s~~~-------~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~ 162 (232)
+.|.+.+.++++++.+. .++|+||+. ...++ .+++.+|+.-. . ....|| ..+.++++.++
T Consensus 60 i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~-~~~~~lgIpvl----~----h~~kKP--~~~~~i~~~~~ 128 (168)
T PF09419_consen 60 IPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAE-ALEKALGIPVL----R----HRAKKP--GCFREILKYFK 128 (168)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHH-HHHHhhCCcEE----E----eCCCCC--ccHHHHHHHHh
Confidence 33444556666667654 499999983 33343 33366664321 1 113555 55666666665
Q ss_pred C-----CCCcEEEEeCch-hhhhhhhhcCCEEEEeCCC
Q 026853 163 M-----EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 163 ~-----~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~ 194 (232)
. .|+++++|||-. .|+-++..+|+.+|++..|
T Consensus 129 ~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g 166 (168)
T PF09419_consen 129 CQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG 166 (168)
T ss_pred hccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence 3 599999999999 9999999999999999875
No 130
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.22 E-value=1.4e-11 Score=101.89 Aligned_cols=113 Identities=21% Similarity=0.225 Sum_probs=85.8
Q ss_pred CCCCCcHHHHHHHHHhCC-CCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcE
Q 026853 90 VKALPGANRLIKHLSCHG-VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (232)
.+++||+.+.+++|++.| ++++++|+.....+...+ +++|+..+|+.+. +.++ ..++++++..++++
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~-~~lgi~~~f~~~~-------p~~K----~~~v~~l~~~~~~v 450 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVA-AELGIDEVHAELL-------PEDK----LAIVKELQEEGGVV 450 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHH-HHhCCCeeeccCC-------HHHH----HHHHHHHHHcCCEE
Confidence 468999999999999999 999999999999999888 9999977766431 1122 23455555567899
Q ss_pred EEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhh--hccCcCcc
Q 026853 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLRPE 217 (232)
Q Consensus 169 ~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~l~el~~~ 217 (232)
+||||+.||+.+++.+| +++.+|+..+..+..+|+++. +++.+...
T Consensus 451 ~~vGDg~nD~~al~~A~---vgia~g~~~~~~~~~Ad~vi~~~~~~~l~~~ 498 (556)
T TIGR01525 451 AMVGDGINDAPALAAAD---VGIAMGAGSDVAIEAADIVLLNDDLSSLPTA 498 (556)
T ss_pred EEEECChhHHHHHhhCC---EeEEeCCCCHHHHHhCCEEEeCCCHHHHHHH
Confidence 99999999999999999 666666433334566777775 55555444
No 131
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=6.8e-10 Score=75.58 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=96.8
Q ss_pred EEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhc--CCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHhhhc
Q 026853 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV--GKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC 88 (232)
Q Consensus 11 ~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (232)
.|+.|+|||+.-.+ ....+-..++.+.........+ ..+..+.+.+++...+.+ .++....+ ..
T Consensus 5 vi~sDFDGTITl~D-----s~~~itdtf~~~e~k~l~~~vls~tiS~rd~~g~mf~~i~~s--~~Eile~l-------lk 70 (220)
T COG4359 5 VIFSDFDGTITLND-----SNDYITDTFGPGEWKALKDGVLSKTISFRDGFGRMFGSIHSS--LEEILEFL-------LK 70 (220)
T ss_pred EEEecCCCceEecc-----hhHHHHhccCchHHHHHHHHHhhCceeHHHHHHHHHHhcCCC--HHHHHHHH-------Hh
Confidence 46779999998332 1222223444322111111111 123445566666665544 23333322 23
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccce-----------------eecccccCCCCCCH
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV-----------------IVGSDEVRTGKPSP 151 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~-----------------~~~~~~~~~~kp~~ 151 (232)
.+.+.||.++++++.++++++++++|++....+...+ +.+.-...++. +...++-..+..++
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lf-e~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~ 149 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLF-EGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKS 149 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHH-HhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcc
Confidence 4789999999999999999999999999999998888 55442211111 11112222233333
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
..++.+.-+++.++|.|||.+|+.+|+... ..++.
T Consensus 150 ----~vI~~l~e~~e~~fy~GDsvsDlsaaklsD---llFAK 184 (220)
T COG4359 150 ----SVIHELSEPNESIFYCGDSVSDLSAAKLSD---LLFAK 184 (220)
T ss_pred ----hhHHHhhcCCceEEEecCCcccccHhhhhh---hHhhH
Confidence 344555566777999999999999999988 44444
No 132
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=99.21 E-value=5.7e-11 Score=85.01 Aligned_cols=173 Identities=16% Similarity=0.278 Sum_probs=93.5
Q ss_pred cE-EEEeCCCcccccHHHHHHHHHHHHHHcCCC--CCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHH--
Q 026853 10 SC-VILDLDGTLLNTDGMFSEVLKTFLVKYGKE--WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS-- 84 (232)
Q Consensus 10 k~-i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 84 (232)
++ |++|+||||.|..+.+.+... +.++.. .+.+.. .+.... +.++.. ..+....+...+.
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n---~~~~~~~~~~~~~~---~~~~~~-------~~~g~~--~~e~~~~~~~~~~~~ 66 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFN---EEFGKNPELTPEDI---TGYWDW-------EKWGIT--EPEFYEKLWRFYEEP 66 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHH---HHTTTS----GGGG---TSSSHH-------HHHHHH--STTHHHHHHHHHTST
T ss_pred CcEEEEECCCCCcccHHHHHHHHH---HHcCCCCCCCHHHh---hhhhHH-------HHhCCC--CHHHHHHHHHHHhCh
Confidence 45 899999999998665444444 455554 333332 111111 111111 1122333333332
Q ss_pred hhhccCCCCCcHHHHHHHHHhCCCCEEEEeCCchH-------HHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHH
Q 026853 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRA-------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA 157 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~-------~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~ 157 (232)
..+...++.||+.+.+++|.+.|..++++|..+.. ....-+.++++...+-+.+++. . |.
T Consensus 67 ~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~-~----K~-------- 133 (191)
T PF06941_consen 67 GFFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG-D----KT-------- 133 (191)
T ss_dssp TTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES-S----GG--------
T ss_pred hhhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec-C----CC--------
Confidence 23567899999999999999999778888777543 2222343444432222333332 1 11
Q ss_pred HHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 158 ~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
.++.+ ++|+|++.++..+...|+.++++..++++... ....+.+.+|+...+.
T Consensus 134 --~v~~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~ei~~~i~ 186 (191)
T PF06941_consen 134 --LVGGD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEEIEDLIL 186 (191)
T ss_dssp --GC--S----EEEESSSHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTSHHHHHH
T ss_pred --eEecc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHHHHHHHH
Confidence 12222 89999999999999999999999986665544 5566678888766653
No 133
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.16 E-value=1.7e-10 Score=85.54 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=53.7
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHH
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPD 152 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~ 152 (232)
.|++.++|++|+++|++++|+|++.+..+...+ +.+|+..+|+.++++++....||+++
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L-~~lGLd~YFdvIIs~Gdv~~~kp~~e 206 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESM-RKVKLDRYFDIIISGGHKAEEYSTMS 206 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-HHcCCCcccCEEEECCccccCCCCcc
Confidence 489999999999999999999999999999888 99999999999999988887777664
No 134
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.11 E-value=1.2e-10 Score=85.25 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHhcCC--CCCcEEEEeCchhhhhhhhhcCCEEE
Q 026853 146 TGKPSPDIFLEAAKRLNM--EPSSSLVIEDSVIGVVAGKAAGMEVV 189 (232)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~--~~~~~~~vgD~~~Di~~a~~~G~~~i 189 (232)
.+-.++.+++.+++.+++ ++.++++|||+.||+.|++.+|+.++
T Consensus 178 ~~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 178 GGSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFL 223 (225)
T ss_pred CCCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence 356667888899888876 67789999999999999999997643
No 135
>PLN02382 probable sucrose-phosphatase
Probab=99.11 E-value=9e-10 Score=87.54 Aligned_cols=61 Identities=20% Similarity=0.071 Sum_probs=47.5
Q ss_pred cccCCCCCCHHHHHHHHHhc---CCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhh
Q 026853 142 DEVRTGKPSPDIFLEAAKRL---NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAA 204 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~---~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~ 204 (232)
+.+..+-.|..+++.+++++ |++++++++|||+.||++|.+.+|...+.+ ++..++.+..+
T Consensus 168 dI~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam--~NA~~elk~~a 231 (413)
T PLN02382 168 DVLPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMV--SNAQEELLQWY 231 (413)
T ss_pred EEEeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEE--cCCcHHHHHHH
Confidence 34556777889999999999 999999999999999999999999433333 44555555443
No 136
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.11 E-value=5.3e-11 Score=82.57 Aligned_cols=100 Identities=8% Similarity=0.055 Sum_probs=86.7
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc-ccceeecccccCCCCCCHHHHHHHHHhcCCCCCc
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~-~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (232)
.+...||+.++|++|++. +.++|+|++....+...+ +.++... +|+.+++.+.....+++ +.+.+..+|.++++
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il-~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~ 114 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVL-DILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSK 114 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHH-HHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhh
Confidence 457899999999999988 999999999999999998 8888765 88988888877666655 66778889999999
Q ss_pred EEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 168 SLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
+++|||++.++.++...|+.+..+..
T Consensus 115 vIiVDD~~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 115 VIIIDNSPYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred EEEEeCChhhhccCccCEeecCCCCC
Confidence 99999999999999999977666664
No 137
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.10 E-value=1.2e-10 Score=96.38 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=81.4
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEE
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 169 (232)
.+++|++.+++++|++.|++++++|+.....++... +++|+. +|.. . .++++. ..+++++.++++++
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia-~~lgi~-~~~~-----~--~p~~K~----~~v~~l~~~~~~v~ 470 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVA-KELGIN-VRAE-----V--LPDDKA----ALIKELQEKGRVVA 470 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHcCCc-EEcc-----C--ChHHHH----HHHHHHHHcCCEEE
Confidence 468899999999999999999999999999998888 888984 2211 1 122333 34444444678999
Q ss_pred EEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhh--hhccCcCcc
Q 026853 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPE 217 (232)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~l~el~~~ 217 (232)
||||+.||+.+++.+|+ .+.++...+.....+|+++ ++++++...
T Consensus 471 ~VGDg~nD~~al~~A~v---gia~g~g~~~a~~~Advvl~~~~l~~l~~~ 517 (562)
T TIGR01511 471 MVGDGINDAPALAQADV---GIAIGAGTDVAIEAADVVLMRNDLNDVATA 517 (562)
T ss_pred EEeCCCccHHHHhhCCE---EEEeCCcCHHHHhhCCEEEeCCCHHHHHHH
Confidence 99999999999999994 5555543333356677776 366655544
No 138
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.07 E-value=2.2e-10 Score=99.54 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=96.6
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCC----------------CCCCHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT----------------GKPSPDIF 154 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~----------------~kp~~~~~ 154 (232)
++.|++++.++.|++.|+++.++|+.....+.... +..|+....+.++++.+... ....|+.-
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia-~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K 606 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIA-RRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK 606 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence 67899999999999999999999999999998887 88999876666655543322 23566666
Q ss_pred HHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc-chhhhHhh--hhccCcCccc
Q 026853 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVI--NSLLDLRPEK 218 (232)
Q Consensus 155 ~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~~~~~~--~~l~el~~~l 218 (232)
..+.+.++...+.+.|+||+.||..+++.|+ +++++|....+. +..||+++ ++++.+...+
T Consensus 607 ~~iv~~lq~~g~~v~mvGDGvND~pAl~~Ad---VGia~g~~g~~va~~aaDivl~dd~~~~i~~~i 670 (884)
T TIGR01522 607 MKIVKALQKRGDVVAMTGDGVNDAPALKLAD---IGVAMGQTGTDVAKEAADMILTDDDFATILSAI 670 (884)
T ss_pred HHHHHHHHHCCCEEEEECCCcccHHHHHhCC---eeEecCCCcCHHHHHhcCEEEcCCCHHHHHHHH
Confidence 7777777777788999999999999999999 677776433333 56778877 5577766543
No 139
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.05 E-value=1.7e-09 Score=69.46 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=98.1
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEE
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 169 (232)
-.+++.+.+.+.+|++. ..++|.|+.......... +..|++. +.++. -.+++.-..+++.|+-+.+.++
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~la-e~~gi~~--~rv~a-------~a~~e~K~~ii~eLkk~~~k~v 97 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLA-EFVGIPV--ERVFA-------GADPEMKAKIIRELKKRYEKVV 97 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHH-HHcCCce--eeeec-------ccCHHHHHHHHHHhcCCCcEEE
Confidence 46789999999999999 999999999988888777 7777532 33332 2345777888999998889999
Q ss_pred EEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCccccCC
Q 026853 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGL 221 (232)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~~~ 221 (232)
||||+.||+.+.+++.....-+..++...+....||.+++++.|+++.+...
T Consensus 98 mVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e~ldl~~~~ 149 (152)
T COG4087 98 MVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEILDLLKDT 149 (152)
T ss_pred EecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHHHHHHhhcc
Confidence 9999999999999999776666666666666788999999999998887643
No 140
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.05 E-value=3.3e-10 Score=75.13 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=79.7
Q ss_pred HHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhh
Q 026853 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (232)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di 178 (232)
-++.|.+.|++++|+|+.....++... +.+|+...|..+ +.+..+++++++++++.++++.|+||..+|+
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra-~~LGI~~~~qG~---------~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dl 112 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRA-KDLGIKHLYQGI---------SDKLAAFEELLKKLNLDPEEVAYVGDDLVDL 112 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHH-HHcCCceeeech---------HhHHHHHHHHHHHhCCCHHHhhhhcCccccH
Confidence 366788889999999999999999998 889987655432 2356799999999999999999999999999
Q ss_pred hhhhhcCCEEEEeCCCCCccccchhhhHhhh
Q 026853 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (232)
Q Consensus 179 ~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~ 209 (232)
...+.+|.++... ...+..+..+++++.
T Consensus 113 pvm~~vGls~a~~---dAh~~v~~~a~~Vt~ 140 (170)
T COG1778 113 PVMEKVGLSVAVA---DAHPLLKQRADYVTS 140 (170)
T ss_pred HHHHHcCCccccc---ccCHHHHHhhHhhhh
Confidence 9999999664333 345666777777764
No 141
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.96 E-value=2.3e-09 Score=77.69 Aligned_cols=47 Identities=21% Similarity=0.138 Sum_probs=42.5
Q ss_pred ccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEE
Q 026853 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189 (232)
Q Consensus 143 ~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i 189 (232)
....+.+++.+++.++++++++++++++|||+.||+.|++.+|+..+
T Consensus 157 v~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 157 VLPAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred EecCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 45578889999999999999999999999999999999999997644
No 142
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.95 E-value=1e-08 Score=76.19 Aligned_cols=50 Identities=20% Similarity=0.142 Sum_probs=39.6
Q ss_pred ccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 143 ~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
.++..-.|..+++.+++++++++++++++|||.||+.|+ ..+...|.|.+
T Consensus 159 ilP~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~N 208 (247)
T PF05116_consen 159 ILPKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGN 208 (247)
T ss_dssp EEETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TT
T ss_pred EccCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcC
Confidence 345666788999999999999999999999999999999 56667787766
No 143
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.95 E-value=1.9e-09 Score=93.35 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=84.7
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
+++|++.+.+++|++.|++++++|+.......... +++|+...+..+. |+...+++++++..+++++|
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia-~~lgi~~~~~~~~-----------p~~K~~~i~~l~~~~~~v~~ 717 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIA-KEAGIDEVIAGVL-----------PDGKAEAIKRLQSQGRQVAM 717 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCCEEEeCCC-----------HHHHHHHHHHHhhcCCEEEE
Confidence 57899999999999999999999999999888887 8899876554321 23345577777778889999
Q ss_pred EeCchhhhhhhhhcCCEEEEeCCCCCccccchhhh--HhhhhccCcCccc
Q 026853 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD--EVINSLLDLRPEK 218 (232)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~--~~~~~l~el~~~l 218 (232)
|||+.||+.+++.+|+ ++.+|+........+| ...++++++...+
T Consensus 718 vGDg~nD~~al~~Agv---gia~g~g~~~a~~~ad~vl~~~~~~~i~~~i 764 (834)
T PRK10671 718 VGDGINDAPALAQADV---GIAMGGGSDVAIETAAITLMRHSLMGVADAL 764 (834)
T ss_pred EeCCHHHHHHHHhCCe---eEEecCCCHHHHHhCCEEEecCCHHHHHHHH
Confidence 9999999999999995 5666544444444444 3335565555443
No 144
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.93 E-value=6e-08 Score=68.66 Aligned_cols=122 Identities=16% Similarity=0.063 Sum_probs=87.3
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcC---CccccceeecccccCCCCCCHHHHHHHHHhcCCCCC
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG---WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~---l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 166 (232)
...++++...++..+..|++++|.|.+....+.... .+.+ +..+++..+- ..--.|-....|..+.+.+|.++.
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllf-g~s~~gdl~~y~~gyfD--t~iG~K~e~~sy~~I~~~Ig~s~~ 198 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLF-GYSDAGDLRKYISGYFD--TTIGLKVESQSYKKIGHLIGKSPR 198 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHH-cccCcchHHHHhhhhhh--ccccceehhHHHHHHHHHhCCChh
Confidence 468899999999999999999999999877655443 3332 3333333321 112245566789999999999999
Q ss_pred cEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc--chhhhHhhhhccCc
Q 026853 167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDL 214 (232)
Q Consensus 167 ~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~~~~~~~~l~el 214 (232)
+++|.-|......+|+.+|+.+..+.++.+.... .....-++.+++.+
T Consensus 199 eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l 248 (254)
T KOG2630|consen 199 EILFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEIL 248 (254)
T ss_pred heEEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhh
Confidence 9999999999999999999999999884333222 22224444555444
No 145
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.92 E-value=1e-08 Score=76.28 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=66.9
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCC--------------------------
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT-------------------------- 146 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~-------------------------- 146 (232)
.|++.++|++|++.|++++|+|++....+...+ +.+|+..+|+.+++++....
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~L-e~lgL~~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~ 228 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSL-KETKLEGYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVT 228 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HHcCCCccccEEEECCCcccccccceeecccceeEEecCceeEeCC
Confidence 388899999999999999999999999999888 99999999998887754321
Q ss_pred ---CCC-CHHHHHHHHHhcCCCCCc-EEEEeCch-hhh
Q 026853 147 ---GKP-SPDIFLEAAKRLNMEPSS-SLVIEDSV-IGV 178 (232)
Q Consensus 147 ---~kp-~~~~~~~~~~~~~~~~~~-~~~vgD~~-~Di 178 (232)
.-| .|..+...+++.|+..-. +..|+|-. ||+
T Consensus 229 ~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~~Nn~ 266 (303)
T PHA03398 229 DVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSNNY 266 (303)
T ss_pred cccCCCCCCeehHHHHHHcCcceeccEEEeccCcccCc
Confidence 112 356778888888887755 44677776 665
No 146
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.92 E-value=7.3e-08 Score=76.88 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=70.3
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhc---------CCccccceeeccccc----------------
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH---------GWNESFSVIVGSDEV---------------- 144 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~---------~l~~~~~~~~~~~~~---------------- 144 (232)
+...|.+..+|+.|++.|.++.++||+....+...+ .++ .|..+||.|++....
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M-~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~ 260 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVM-SYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTE 260 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHH-HHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETT
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhh-hhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECC
Confidence 345789999999999999999999999988887766 332 478899999875310
Q ss_pred -CC---CC------C----CHHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhc-CCEEEEeCC
Q 026853 145 -RT---GK------P----SPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAA-GMEVVAVPS 193 (232)
Q Consensus 145 -~~---~k------p----~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~-G~~~i~v~~ 193 (232)
+. .+ + ...-...+.+.+|....+|++|||+. .||...+.. ||.|++|..
T Consensus 261 ~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ 325 (448)
T PF05761_consen 261 TGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIP 325 (448)
T ss_dssp TSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-T
T ss_pred CCccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEeh
Confidence 10 00 0 01235677888999999999999999 899887776 999999976
No 147
>PTZ00174 phosphomannomutase; Provisional
Probab=98.90 E-value=5.6e-10 Score=83.17 Aligned_cols=48 Identities=8% Similarity=-0.131 Sum_probs=41.0
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeC----chhhhhhhhhcCCEEEEeCC
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD----~~~Di~~a~~~G~~~i~v~~ 193 (232)
+....+-.|..+++.+++. ++++++||| +.||++|.+.++..++.|++
T Consensus 181 eI~~~gvsKg~al~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n 232 (247)
T PTZ00174 181 DVFPKGWDKTYCLRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKN 232 (247)
T ss_pred EeeeCCCcHHHHHHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeCC
Confidence 4456677888999999988 599999999 88999999988877788874
No 148
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.85 E-value=1e-08 Score=84.54 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHhcCCCCCcEEEE--eCchhhhhhhhhcCCEEEE
Q 026853 146 TGKPSPDIFLEAAKRLNMEPSSSLVI--EDSVIGVVAGKAAGMEVVA 190 (232)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~~~v--gD~~~Di~~a~~~G~~~i~ 190 (232)
.+..|..+++.+++.+++..++++.| ||+.||+.|.+.+|..+++
T Consensus 610 ~gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM 656 (694)
T PRK14502 610 GGNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILV 656 (694)
T ss_pred CCCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEE
Confidence 46678899999999999999999999 9999999999999976444
No 149
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.81 E-value=1.4e-08 Score=65.21 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=68.2
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHH------hcC
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK------RLN 162 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~------~~~ 162 (232)
.+.++|.+++++.+++..|+.+..+|=+....+-..| ..+++..+|+.++.-..-.+. .++.++++ ...
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aL-ral~~~~yFhy~ViePhP~K~----~ML~~llr~i~~er~~~ 113 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKAL-RALDLLQYFHYIVIEPHPYKF----LMLSQLLREINTERNQK 113 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHH-HHhchhhhEEEEEecCCChhH----HHHHHHHHHHHHhhccc
Confidence 4679999999999999999999999988888888888 889999999987643221111 23334443 345
Q ss_pred CCCCcEEEEeCchhhhhhhhh
Q 026853 163 MEPSSSLVIEDSVIGVVAGKA 183 (232)
Q Consensus 163 ~~~~~~~~vgD~~~Di~~a~~ 183 (232)
+.|+++++++|..-.+.-..+
T Consensus 114 ikP~~Ivy~DDR~iH~~~Iwe 134 (164)
T COG4996 114 IKPSEIVYLDDRRIHFGNIWE 134 (164)
T ss_pred cCcceEEEEecccccHHHHHH
Confidence 899999999999865555544
No 150
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.81 E-value=6.8e-09 Score=78.05 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=49.9
Q ss_pred cCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhc----CCEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA----GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 144 ~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~----G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
...+..|..+++++++.+++..+++++|||+.||+.|.+.+ | .++.|.. .. ..|.+.+++..++..+|.
T Consensus 169 ~p~g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g-~~vavg~--a~----~~A~~~l~~~~~v~~~L~ 241 (266)
T PRK10187 169 KPRGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGG-ISVKVGT--GA----TQASWRLAGVPDVWSWLE 241 (266)
T ss_pred eCCCCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCC-eEEEECC--CC----CcCeEeCCCHHHHHHHHH
Confidence 34556788999999999999999999999999999999998 5 3344433 22 224555555555555444
No 151
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.77 E-value=4.3e-07 Score=65.87 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=64.2
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHH---HHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHH-HhcCCC
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA-KRLNME 164 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~-~~~~~~ 164 (232)
..++.|++.++++.++++|+.++++|+..... +...| ...|+..+ +.++-...-...++ ...|+.-. +++--+
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL-~~~G~~~~-~~LiLR~~~d~~~~-~~~yKs~~R~~l~~~ 194 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNL-INAGFTGW-KHLILRGLEDSNKT-VVTYKSEVRKSLMEE 194 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHH-HHcCCCCc-CeeeecCCCCCCch-HhHHHHHHHHHHHhC
Confidence 45899999999999999999999999998665 55666 66787654 55554432222322 12222222 122212
Q ss_pred CCc-EEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 165 PSS-SLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 165 ~~~-~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
.-+ +..|||..+|+.+. .+|.+++..++
T Consensus 195 GYrIv~~iGDq~sDl~G~-~~~~RtFKLPN 223 (229)
T TIGR01675 195 GYRIWGNIGDQWSDLLGS-PPGRRTFKLPN 223 (229)
T ss_pred CceEEEEECCChHHhcCC-CccCceeeCCC
Confidence 223 45799999999764 46656665544
No 152
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.76 E-value=1.7e-08 Score=86.23 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=77.7
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
++.|++.+.+++|++.|++++++|+.......... +.+|+..+++ . . |+--..++++++ .++.|+|
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia-~~lgi~~~~~------~----~--p~~K~~~v~~l~-~~~~v~m 633 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIA-GELGIDFRAG------L----L--PEDKVKAVTELN-QHAPLAM 633 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCeecC------C----C--HHHHHHHHHHHh-cCCCEEE
Confidence 68899999999999999999999999999988888 8899853221 1 1 222233444554 2468999
Q ss_pred EeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhh--hhccCcCcc
Q 026853 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPE 217 (232)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~l~el~~~ 217 (232)
|||+.||..+++.++ +++.+++........+|.+. +++.++...
T Consensus 634 vGDgiNDapAl~~A~---vgia~g~~~~~a~~~adivl~~~~l~~l~~~ 679 (741)
T PRK11033 634 VGDGINDAPAMKAAS---IGIAMGSGTDVALETADAALTHNRLRGLAQM 679 (741)
T ss_pred EECCHHhHHHHHhCC---eeEEecCCCHHHHHhCCEEEecCCHHHHHHH
Confidence 999999999999999 66666543333344455443 455555433
No 153
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.74 E-value=1.4e-08 Score=88.66 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=88.2
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcccc----ceeeccccc----------------CCCCCC
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF----SVIVGSDEV----------------RTGKPS 150 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~----~~~~~~~~~----------------~~~kp~ 150 (232)
++.+++.+.++.|++.|+++.++|+.....+.... +..|+...- ...+.+.+. -.....
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia-~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~ 615 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAIC-RRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVE 615 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHH-HHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecC
Confidence 57899999999999999999999999888887777 888875311 112222111 112233
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhh--ccCcCccc
Q 026853 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS--LLDLRPEK 218 (232)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~--l~el~~~l 218 (232)
|+.-.++.+.++-..+.+.|+||+.||+.|++.|+ +++.+++..+..+..+|+++.+ ++.+...+
T Consensus 616 P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~Ad---VGia~g~g~~~ak~aAD~vl~dd~f~~i~~~i 682 (917)
T TIGR01116 616 PSHKSELVELLQEQGEIVAMTGDGVNDAPALKKAD---IGIAMGSGTEVAKEASDMVLADDNFATIVAAV 682 (917)
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCC---eeEECCCCcHHHHHhcCeEEccCCHHHHHHHH
Confidence 45556677777766778889999999999999999 5666654444446678888866 66665543
No 154
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.70 E-value=2.3e-07 Score=64.00 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=58.4
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHH---HHHhhh-----cCCccccceeeccccc---------CCCCC---CHH
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQ-----HGWNESFSVIVGSDEV---------RTGKP---SPD 152 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~---~~l~~~-----~~l~~~~~~~~~~~~~---------~~~kp---~~~ 152 (232)
.|++.+++++++++|++++++|+++..... ..+ .. .++.. ..++++... -..+| +..
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l-~~~~~~~~~lp~--g~li~~~g~~~~~~~~e~i~~~~~~~K~~ 105 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYL-SQIKQDGHNLPH--GPVLLSPDRLFAALHREVISKKPEVFKIA 105 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHH-HHhhhccccCCC--ceEEEcCCcchhhhhcccccCCHHHHHHH
Confidence 588999999999999999999999877764 445 33 22321 233333221 12233 233
Q ss_pred HHHHHHHhcCCCCCcE-EEEeCchhhhhhhhhcCCE
Q 026853 153 IFLEAAKRLNMEPSSS-LVIEDSVIGVVAGKAAGME 187 (232)
Q Consensus 153 ~~~~~~~~~~~~~~~~-~~vgD~~~Di~~a~~~G~~ 187 (232)
.++.+.+.+.-..-.. ..|||+.+|+.+-+++|+.
T Consensus 106 ~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 106 CLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 4455554443222233 4589889999999999985
No 155
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.64 E-value=1.5e-07 Score=64.00 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=66.0
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHH---HHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCc
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (232)
.|-+-+++++.-..++|-.++.+|+...-. +...|.+.+.+..-.-.++.++- .||...--...+...++.
T Consensus 114 IPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk---~k~~qy~Kt~~i~~~~~~--- 187 (237)
T COG3700 114 IPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDK---PKPGQYTKTQWIQDKNIR--- 187 (237)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCC---CCcccccccHHHHhcCce---
Confidence 345567888999999999999999986544 34455455666443333333322 233322334455666664
Q ss_pred EEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 168 SLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
++.|||.+||.+|+++|.+.|-+.+
T Consensus 188 -IhYGDSD~Di~AAkeaG~RgIRilR 212 (237)
T COG3700 188 -IHYGDSDNDITAAKEAGARGIRILR 212 (237)
T ss_pred -EEecCCchhhhHHHhcCccceeEEe
Confidence 9999999999999999999998887
No 156
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.61 E-value=3.1e-07 Score=68.58 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHhcCCC--CCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 147 GKPSPDIFLEAAKRLNME--PSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~--~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
..++..+++.+.+.++-. +-.++.+|||+||+.|.+.+.+.++ |.+
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vv-i~~ 253 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVV-LPS 253 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEE-ecC
Confidence 446677888887776643 4479999999999999999997744 444
No 157
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.61 E-value=2.5e-06 Score=69.40 Aligned_cols=96 Identities=15% Similarity=0.024 Sum_probs=56.9
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcccc--------ceeecccccCCCCCC-HHHHHHHHHhcC
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF--------SVIVGSDEVRTGKPS-PDIFLEAAKRLN 162 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~--------~~~~~~~~~~~~kp~-~~~~~~~~~~~~ 162 (232)
+.+.+.+ .++++|. .+++|.++...++...++.+|++..+ +..+++...+..-.. .+-..++.+.++
T Consensus 111 l~~~a~~---~~~~~g~-~vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g 186 (497)
T PLN02177 111 VHPETWR---VFNSFGK-RYIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG 186 (497)
T ss_pred cCHHHHH---HHHhCCC-EEEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhC
Confidence 4454444 4455664 49999999999988873446765331 222222221111111 123333445566
Q ss_pred CCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 163 ~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
.+... +++|||.+|..+...|+-. +.|+.
T Consensus 187 ~~~~~-~aYgDS~sD~plL~~a~e~-y~V~~ 215 (497)
T PLN02177 187 DALPD-LGLGDRETDHDFMSICKEG-YMVPR 215 (497)
T ss_pred CCCce-EEEECCccHHHHHHhCCcc-EEeCC
Confidence 54444 8999999999999999955 55544
No 158
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.61 E-value=1.9e-07 Score=68.44 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=57.2
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchH---HHHHHHhhhcCCccccceeecccccCCC---CC-CHHHHHHHHHh-cC
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTG---KP-SPDIFLEAAKR-LN 162 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~---~~~~~l~~~~~l~~~~~~~~~~~~~~~~---kp-~~~~~~~~~~~-~~ 162 (232)
++.|++.++++.++++|..|+++|+.... .....| ...|...+-..++........ .. +......+.+. +.
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL-~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~ 193 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNL-KKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYR 193 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHH-HHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHH-HHcCCCccchhccccccccccccccccchHHHHHHHHcCCc
Confidence 78899999999999999999999999654 345556 666765443333333222111 11 22333333344 33
Q ss_pred CCCCcEEEEeCchhhhhhhhhc
Q 026853 163 MEPSSSLVIEDSVIGVVAGKAA 184 (232)
Q Consensus 163 ~~~~~~~~vgD~~~Di~~a~~~ 184 (232)
+ +++|||..+|+..++..
T Consensus 194 I----i~~iGD~~~D~~~~~~~ 211 (229)
T PF03767_consen 194 I----IANIGDQLSDFSGAKTA 211 (229)
T ss_dssp E----EEEEESSGGGCHCTHHH
T ss_pred E----EEEeCCCHHHhhccccc
Confidence 3 67899999999995544
No 159
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.59 E-value=1.2e-07 Score=79.44 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=74.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
++.|++++.+++|++.|+++.++|+.....+.... +.+|+.+.+.. -.|+--....+.++-....+.|
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA-~~lGI~~v~a~-----------~~PedK~~~v~~lq~~g~~Vam 513 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIA-AEAGVDDFIAE-----------ATPEDKIALIRQEQAEGKLVAM 513 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCEEEcC-----------CCHHHHHHHHHHHHHcCCeEEE
Confidence 67899999999999999999999999999888777 88898653321 1234334444444444557999
Q ss_pred EeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHh
Q 026853 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEV 207 (232)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~ 207 (232)
+||+.||..+.+.++ ++++++......+..++++
T Consensus 514 vGDG~NDapAL~~Ad---vGiAm~~gt~~akeaadiv 547 (675)
T TIGR01497 514 TGDGTNDAPALAQAD---VGVAMNSGTQAAKEAANMV 547 (675)
T ss_pred ECCCcchHHHHHhCC---EeEEeCCCCHHHHHhCCEE
Confidence 999999999999999 5566543333334455544
No 160
>PLN02423 phosphomannomutase
Probab=98.59 E-value=2.6e-08 Score=74.05 Aligned_cols=47 Identities=11% Similarity=-0.136 Sum_probs=40.3
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeC----chhhhhhhhhcCCEEEEeCC
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD----~~~Di~~a~~~G~~~i~v~~ 193 (232)
+.+..+-.|..+++.++ +++++++||| +.||++|.+.-|+.++-|.+
T Consensus 182 Di~~~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 182 DVFPQGWDKTYCLQFLE-----DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS 232 (245)
T ss_pred EEeeCCCCHHHHHHHhc-----CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence 44566777777888777 8999999999 79999999999999999977
No 161
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.56 E-value=2.7e-06 Score=63.31 Aligned_cols=106 Identities=15% Similarity=0.218 Sum_probs=74.4
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHh--hhcCCc--cc-c--ceee-----cc-----------ccc
Q 026853 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWN--ES-F--SVIV-----GS-----------DEV 144 (232)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~--~~~~l~--~~-~--~~~~-----~~-----------~~~ 144 (232)
......+++.++++.|+..|+++..+|..........++ +.+|+. .. + +..+ .. --+
T Consensus 78 ~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlf 157 (252)
T PF11019_consen 78 KMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILF 157 (252)
T ss_pred ceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEE
Confidence 344577899999999999999999999998666544431 444542 11 0 0011 00 011
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhh----hhcCCEEEEeCC
Q 026853 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG----KAAGMEVVAVPS 193 (232)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a----~~~G~~~i~v~~ 193 (232)
..+-++++++...+...|..|+.++||+|+..++... +..|+..+++.-
T Consensus 158 t~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Y 210 (252)
T PF11019_consen 158 TGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHY 210 (252)
T ss_pred eCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEE
Confidence 2446678999999999999999999999999877664 446777777765
No 162
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.56 E-value=1.9e-07 Score=78.35 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=78.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
++.|++++.+++|++.|+++.++|+.....+...- +..|+.+.+. .-.|+--.++.++++-..+-|.|
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGId~v~A-----------~~~PedK~~iV~~lQ~~G~~VaM 512 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVDDFLA-----------EATPEDKLALIRQEQAEGRLVAM 512 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCcEEEc-----------cCCHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999999999888777 8889855322 12455556666666655667999
Q ss_pred EeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhh
Q 026853 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (232)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~ 208 (232)
+||+.||-.+.+.+. ++++++...+-.+..+|.+.
T Consensus 513 tGDGvNDAPALa~AD---VGIAMgsGTdvAkeAADiVL 547 (679)
T PRK01122 513 TGDGTNDAPALAQAD---VGVAMNSGTQAAKEAGNMVD 547 (679)
T ss_pred ECCCcchHHHHHhCC---EeEEeCCCCHHHHHhCCEEE
Confidence 999999999999999 77777533333355555544
No 163
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.56 E-value=2.3e-07 Score=77.83 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=79.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
++.|++++.+++|++.|+++.++|+.....+...- +.+|+.+.|. .-.|+--.++.+.++-..+-|.|
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGI~~v~A-----------~~~PedK~~iV~~lQ~~G~~VaM 508 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIA-KEAGVDRFVA-----------ECKPEDKINVIREEQAKGHIVAM 508 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCceEEc-----------CCCHHHHHHHHHHHHhCCCEEEE
Confidence 68899999999999999999999999999888777 8899865332 12455556666666666677999
Q ss_pred EeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhh
Q 026853 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (232)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~ 208 (232)
+||+.||-.+.+++. ++++++....-.+..+|.+.
T Consensus 509 tGDGvNDAPALa~AD---VGIAMgsGTdvAkeAADiVL 543 (673)
T PRK14010 509 TGDGTNDAPALAEAN---VGLAMNSGTMSAKEAANLID 543 (673)
T ss_pred ECCChhhHHHHHhCC---EEEEeCCCCHHHHHhCCEEE
Confidence 999999999999999 77777633333355555544
No 164
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=7.6e-07 Score=59.96 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=64.0
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCC-ccccceeecccccCCCCCCHHHHHHHHHhcCCCCC
Q 026853 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (232)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l-~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 166 (232)
.+.....++.+.|..+++. .++..+|........... ..+.. .-.+|.+...+..+ | -.+.+.++++
T Consensus 69 ke~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~-~~l~~q~ih~~~l~i~g~h~--K------V~~vrth~id-- 136 (194)
T COG5663 69 KEALLAQLVKQVLPSLKEE-HRLIYITARKADLTRITY-AWLFIQNIHYDHLEIVGLHH--K------VEAVRTHNID-- 136 (194)
T ss_pred HHHHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHH-HHHHHhccchhhhhhhcccc--c------chhhHhhccC--
Confidence 3445667888999999887 578888887666544333 33221 12344443222211 1 3456778887
Q ss_pred cEEEEeCch-hhhhhhhhcCCEEEEeCCCCCc
Q 026853 167 SSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQ 197 (232)
Q Consensus 167 ~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~ 197 (232)
++|.|+. |-...|+++|++++.+++.+.+
T Consensus 137 --lf~ed~~~na~~iAk~~~~~vilins~ynR 166 (194)
T COG5663 137 --LFFEDSHDNAGQIAKNAGIPVILINSPYNR 166 (194)
T ss_pred --ccccccCchHHHHHHhcCCcEEEecCcccc
Confidence 8999999 8888899999999999995544
No 165
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.55 E-value=1.2e-07 Score=81.30 Aligned_cols=69 Identities=14% Similarity=-0.022 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
..+-.|..+++.+++ +++++.+++|||+.||+.|++.++...+.|..|+. +..|++.+++..|+...|.
T Consensus 653 p~~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~----~s~A~~~l~~~~eV~~~L~ 721 (726)
T PRK14501 653 PAGVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG----ESRARYRLPSQREVRELLR 721 (726)
T ss_pred ECCCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECCC----CCcceEeCCCHHHHHHHHH
Confidence 345667888888888 77889999999999999999997533345555442 3557777777777655554
No 166
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.48 E-value=5.4e-06 Score=61.34 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=62.2
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHH---HHHHHhhhcCCccccceeecccccCCCCCCHHHHHHH-HHhcCCC
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA-AKRLNME 164 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~-~~~~~~~ 164 (232)
..++.|++.++.+.+++.|+.++++|+..... ....| ...|+..+ +.++-...-...+.+...++.. .+++--+
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL-~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~e 220 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANL-KKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQE 220 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH-HHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHHc
Confidence 46789999999999999999999999997543 44455 55677654 4444433221122222222211 1111111
Q ss_pred CCc-EEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 165 PSS-SLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 165 ~~~-~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
.-+ +..|||..+|+.+....+-++.-.++
T Consensus 221 GYrIv~~iGDq~sDl~G~~~g~~RtFKLPN 250 (275)
T TIGR01680 221 GYNIVGIIGDQWNDLKGEHRGAIRSFKLPN 250 (275)
T ss_pred CceEEEEECCCHHhccCCCccCcceecCCC
Confidence 122 56799999999766532346666655
No 167
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.48 E-value=1.6e-07 Score=82.46 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=84.7
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccC----------------CCCCCHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 154 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~----------------~~kp~~~~~ 154 (232)
++.|++++.++.|++.|+++.++|+.....+...- +..|+...-..++.+.+.. ...-.|+--
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA-~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K 657 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIA-RNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDK 657 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHH
Confidence 57889999999999999999999999999888777 8889864222333332211 122345555
Q ss_pred HHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccc-cchhhhHhhh--hccCcCc
Q 026853 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVIN--SLLDLRP 216 (232)
Q Consensus 155 ~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~--~l~el~~ 216 (232)
.++.+.++-..+.|.|+||+.||..+.++|. +++++|....+ .+..||+++. +++.+..
T Consensus 658 ~~iV~~lq~~g~vVam~GDGvNDapALk~Ad---VGIAmg~~gtdvAk~aADivL~dd~f~~I~~ 719 (941)
T TIGR01517 658 QLLVLMLKDMGEVVAVTGDGTNDAPALKLAD---VGFSMGISGTEVAKEASDIILLDDNFASIVR 719 (941)
T ss_pred HHHHHHHHHCCCEEEEECCCCchHHHHHhCC---cceecCCCccHHHHHhCCEEEecCCHHHHHH
Confidence 5566666555567999999999999999999 77777633333 3556666653 4444433
No 168
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.46 E-value=5.1e-07 Score=76.01 Aligned_cols=111 Identities=22% Similarity=0.250 Sum_probs=81.1
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
++.|+.++.+++|++.|+++.++|+......+..- +.+|+++++..+. |+--.+..++++-....+.|
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA-~~lGId~v~Aell-----------PedK~~~V~~l~~~g~~Vam 604 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIA-KELGIDEVRAELL-----------PEDKAEIVRELQAEGRKVAM 604 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcChHhheccCC-----------cHHHHHHHHHHHhcCCEEEE
Confidence 58899999999999999999999999999988777 8899866554432 23334555566655578999
Q ss_pred EeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhh--hhccCcCc
Q 026853 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRP 216 (232)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~l~el~~ 216 (232)
|||+.||-.+...+. +++.+|....-....+|.+. +++..+..
T Consensus 605 VGDGINDAPALA~Ad---VGiAmG~GtDvA~eaADvvL~~~dL~~v~~ 649 (713)
T COG2217 605 VGDGINDAPALAAAD---VGIAMGSGTDVAIEAADVVLMRDDLSAVPE 649 (713)
T ss_pred EeCCchhHHHHhhcC---eeEeecCCcHHHHHhCCEEEecCCHHHHHH
Confidence 999999999999999 77777552222244444333 44544443
No 169
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.41 E-value=2.6e-06 Score=71.90 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=64.3
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
++.|++...+..|++.|++++++|+.....++... ++.| ++.+++ +..+. --....+++.-....+.|
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA-~~VG----i~~V~a-ev~P~------~K~~~Ik~lq~~~~~VaM 790 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVA-QQVG----IDNVYA-EVLPE------QKAEKIKEIQKNGGPVAM 790 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHH-HhhC----cceEEe-ccCch------hhHHHHHHHHhcCCcEEE
Confidence 57899999999999999999999999999888777 8888 444432 22222 223344444444577999
Q ss_pred EeCchhhhhhhhhcCCE
Q 026853 171 IEDSVIGVVAGKAAGME 187 (232)
Q Consensus 171 vgD~~~Di~~a~~~G~~ 187 (232)
|||+.||-.+...+.+.
T Consensus 791 VGDGINDaPALA~AdVG 807 (951)
T KOG0207|consen 791 VGDGINDAPALAQADVG 807 (951)
T ss_pred EeCCCCccHHHHhhccc
Confidence 99999999999988833
No 170
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=98.40 E-value=8.2e-07 Score=78.65 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=84.2
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccc----------cceeecccccC---------------
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES----------FSVIVGSDEVR--------------- 145 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~----------~~~~~~~~~~~--------------- 145 (232)
++.|++++.++.|++.|++++++|+.....+.... +..|+... -+.++++.+..
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA-~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~ 724 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIA-QEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCL 724 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCe
Confidence 57899999999999999999999999999888777 88898532 11233332221
Q ss_pred -CCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccc-cchhhhHhhh--hccCcCc
Q 026853 146 -TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVIN--SLLDLRP 216 (232)
Q Consensus 146 -~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~--~l~el~~ 216 (232)
...-.|+.-..+.+.++-..+.|.|+||+.||..+.+.+. +++++|....+ .+..+|+++. +++.+..
T Consensus 725 V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~Ad---VGIAmg~~gt~vak~aADivl~dd~f~~I~~ 796 (1053)
T TIGR01523 725 VIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMAN---VGIAMGINGSDVAKDASDIVLSDDNFASILN 796 (1053)
T ss_pred EEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCC---ccEecCCCccHHHHHhcCEEEecCCHHHHHH
Confidence 1223445555566666555677999999999999999999 66666533333 3556666653 3544443
No 171
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.39 E-value=7.4e-07 Score=77.66 Aligned_cols=112 Identities=11% Similarity=0.079 Sum_probs=79.1
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccC----------------CCCCCHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 154 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~----------------~~kp~~~~~ 154 (232)
++.|++++.+++|++.|+++.++|+.....+...- +..|+.. +.++.+.+.. ...-.|+--
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA-~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K 591 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARIC-QEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQK 591 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHH
Confidence 57789999999999999999999999998887776 8889853 1233222211 112344555
Q ss_pred HHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhh
Q 026853 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (232)
Q Consensus 155 ~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~ 208 (232)
.++.+.++-..+.|.|+||+.||..+.+.|. ++++++...+-.+..+|.+.
T Consensus 592 ~~iV~~lq~~G~vVam~GDGvNDapALk~Ad---VGIAmg~gtdvAk~aADiVL 642 (867)
T TIGR01524 592 SRIIGLLKKAGHTVGFLGDGINDAPALRKAD---VGISVDTAADIAKEASDIIL 642 (867)
T ss_pred HHHHHHHHhCCCEEEEECCCcccHHHHHhCC---EEEEeCCccHHHHHhCCEEE
Confidence 5566666555677999999999999999999 66666533333355666554
No 172
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.39 E-value=5.2e-07 Score=77.52 Aligned_cols=110 Identities=19% Similarity=0.142 Sum_probs=77.6
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeeccccc----------------------CCCC
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------------RTGK 148 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~----------------------~~~k 148 (232)
++.|++++.++.|++.|+++.++|+.....+...- +..|+... ++.+++. ....
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr 517 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETA-RRLGLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFAE 517 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEe
Confidence 67899999999999999999999999999888777 88898542 1111111 1122
Q ss_pred CCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHh
Q 026853 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEV 207 (232)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~ 207 (232)
-.|+--.++.+.++-..+-|.|+||+.||..+.+.|. ++++++...+-.+..||.+
T Consensus 518 ~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~Ad---VGIAm~~gtdvAkeaADiv 573 (755)
T TIGR01647 518 VFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKAD---VGIAVAGATDAARSAADIV 573 (755)
T ss_pred cCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCC---eeEEecCCcHHHHHhCCEE
Confidence 3455555666666666677999999999999999999 5555543222224445443
No 173
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.38 E-value=6.1e-07 Score=78.30 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=81.3
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccC----------------CCCCCHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 154 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~----------------~~kp~~~~~ 154 (232)
++.|++++.+++|++.|+++.++|+.....+...- +..|+.. +.++++.+.. ...-.|+--
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K 626 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVC-HEVGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMHK 626 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHH
Confidence 57789999999999999999999999999888777 8889852 2333332211 122345555
Q ss_pred HHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhh
Q 026853 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (232)
Q Consensus 155 ~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~ 208 (232)
.++.+.++-..+-|.|+||+.||..+.+.|. +++++|...+-.+..+|.+.
T Consensus 627 ~~IV~~Lq~~G~vVam~GDGvNDaPALk~AD---VGIAmg~gtdvAkeaADiVL 677 (902)
T PRK10517 627 ERIVTLLKREGHVVGFMGDGINDAPALRAAD---IGISVDGAVDIAREAADIIL 677 (902)
T ss_pred HHHHHHHHHCCCEEEEECCCcchHHHHHhCC---EEEEeCCcCHHHHHhCCEEE
Confidence 6666666666677999999999999999999 77777633333356666554
No 174
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.38 E-value=7.9e-07 Score=77.68 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=84.8
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccC----------------CCCCCHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 154 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~----------------~~kp~~~~~ 154 (232)
++.|++++.+++|++.|+++.++|+.....+...- +.+|+.. +.++++.+.. ...-.|+--
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA-~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K 626 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKIC-REVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQK 626 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHH
Confidence 57789999999999999999999999999888777 8889852 2233332211 122345556
Q ss_pred HHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhh--hhccCcCc
Q 026853 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRP 216 (232)
Q Consensus 155 ~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~l~el~~ 216 (232)
.++.+.++-..+-|.|+||+.||..+.+.|. +++++|...+-.+..||.+. ++++.+..
T Consensus 627 ~~iV~~Lq~~G~vVamtGDGvNDaPALk~AD---VGIAmg~gtdvAkeaADiVLldd~f~~Iv~ 687 (903)
T PRK15122 627 SRVLKALQANGHTVGFLGDGINDAPALRDAD---VGISVDSGADIAKESADIILLEKSLMVLEE 687 (903)
T ss_pred HHHHHHHHhCCCEEEEECCCchhHHHHHhCC---EEEEeCcccHHHHHhcCEEEecCChHHHHH
Confidence 6666666666677999999999999999999 67777633333366666555 44444433
No 175
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.36 E-value=1.6e-07 Score=65.20 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=63.4
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCC-ccccceeecccccCCCCCCHHHHHHHHHhcCCCCCc
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l-~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (232)
.+...||+.++|+.+.+. +.++|.|.+....+...+ +.+.- ...|+.++..+.+...+.. +.+-++.++.+.++
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~-~~ldp~~~~~~~~~~r~~~~~~~~~---~~KdL~~l~~~~~~ 108 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVL-DALDPNGKLFSRRLYRDDCTFDKGS---YIKDLSKLGRDLDN 108 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHH-HHHTTTTSSEEEEEEGGGSEEETTE---EE--GGGSSS-GGG
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHH-Hhhhhhccccccccccccccccccc---cccchHHHhhcccc
Confidence 456789999999999776 999999999999999888 76665 5678888876654322211 11456667778899
Q ss_pred EEEEeCchhhhhhhhhcC
Q 026853 168 SLVIEDSVIGVVAGKAAG 185 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G 185 (232)
+++|+|++.-...-...+
T Consensus 109 vvivDD~~~~~~~~~~N~ 126 (159)
T PF03031_consen 109 VVIVDDSPRKWALQPDNG 126 (159)
T ss_dssp EEEEES-GGGGTTSGGGE
T ss_pred EEEEeCCHHHeeccCCce
Confidence 999999997665555556
No 176
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=98.30 E-value=3.5e-05 Score=58.44 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhc---CCccccceeecccccC-----CCCCC-------------
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH---GWNESFSVIVGSDEVR-----TGKPS------------- 150 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~---~l~~~~~~~~~~~~~~-----~~kp~------------- 150 (232)
-.|....+++.|+++|.++.++||++...+..-+ ..+ .|...||.||.-...+ ..+|-
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM-~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wd 319 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGM-RFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWD 319 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCc-eeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhh
Confidence 3466778899999999999999999999886655 322 3778899887543211 11111
Q ss_pred ------------HHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhh-hcCCEEEEeCC
Q 026853 151 ------------PDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS 193 (232)
Q Consensus 151 ------------~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~-~~G~~~i~v~~ 193 (232)
...+...++.-+....+|++|||.. +|+.... ..||.+-.+-.
T Consensus 320 kv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 320 KVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred hhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 0114566677788899999999999 8998877 89999877765
No 177
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=98.29 E-value=1.8e-06 Score=76.37 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=83.7
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcccc------------------------ceeeccccc--
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF------------------------SVIVGSDEV-- 144 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~------------------------~~~~~~~~~-- 144 (232)
++.+++++.++++++.|++++++|+.....+.... +..|+...- ..++.+.+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia-~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~ 646 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 646 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence 56789999999999999999999999999888777 777873210 023332221
Q ss_pred ----------------CCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc-chhhhHh
Q 026853 145 ----------------RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEV 207 (232)
Q Consensus 145 ----------------~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~~~~~ 207 (232)
-...-.|+--.++.+.++-...-|.|+||+.||+.|.+.|. +++++|....+. +..+|++
T Consensus 647 l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~Ad---VGiamg~~G~~vak~aADiv 723 (997)
T TIGR01106 647 MTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKAD---IGVAMGIAGSDVSKQAADMI 723 (997)
T ss_pred CCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCC---cceecCCcccHHHHHhhceE
Confidence 11223455555555555555567899999999999999999 778776544443 5566766
Q ss_pred hhh--ccCcCc
Q 026853 208 INS--LLDLRP 216 (232)
Q Consensus 208 ~~~--l~el~~ 216 (232)
+.+ ++-+..
T Consensus 724 L~dd~f~~Iv~ 734 (997)
T TIGR01106 724 LLDDNFASIVT 734 (997)
T ss_pred EecCCHHHHHH
Confidence 543 444433
No 178
>PLN02645 phosphoglycolate phosphatase
Probab=98.24 E-value=1.4e-05 Score=61.81 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=69.4
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCc---hHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCc
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSH---RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~---~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (232)
.++||+.++|++|+++|++++++||++ .......+ +.+|+...++.++++.. .....++..+....+
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l-~~lGi~~~~~~I~ts~~---------~~~~~l~~~~~~~~~ 113 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF-ESLGLNVTEEEIFSSSF---------AAAAYLKSINFPKDK 113 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH-HHCCCCCChhhEeehHH---------HHHHHHHhhccCCCC
Confidence 578999999999999999999999987 34444455 66788777777766533 455666666665555
Q ss_pred EEEEeCchhhhhhhhhcCCEEEE
Q 026853 168 SLVIEDSVIGVVAGKAAGMEVVA 190 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G~~~i~ 190 (232)
.++++++..+...++.+|+.++.
T Consensus 114 ~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 114 KVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred EEEEEcCHHHHHHHHHCCCEEec
Confidence 68888889999999999987654
No 179
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.20 E-value=3.7e-06 Score=73.70 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=76.3
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccc--eeecccccC----------------CCCCCH
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVR----------------TGKPSP 151 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~--~~~~~~~~~----------------~~kp~~ 151 (232)
-+|.+++++.++.|++.|+++..+|+.....+...- +..|+...-. .++.+.+.. ...-.|
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa-~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP 624 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIA-KECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSP 624 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHH-HHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCH
Confidence 368899999999999999999999999999887776 8888765543 255444322 112345
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCC
Q 026853 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (232)
+--.++.+.++-...-|.|.||+.||..|.+.|. |+|+++
T Consensus 625 ~qK~~IV~~lq~~g~vVamtGDGvNDapALk~AD---VGIamg 664 (917)
T COG0474 625 EQKARIVEALQKSGHVVAMTGDGVNDAPALKAAD---VGIAMG 664 (917)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcC---ccEEec
Confidence 5556666666666677999999999999999999 555553
No 180
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=98.12 E-value=9.3e-06 Score=68.14 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=82.6
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccc----eeecccccCC----------------CCCC
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS----VIVGSDEVRT----------------GKPS 150 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~----~~~~~~~~~~----------------~kp~ 150 (232)
+|.+++++.++.+++.|+++..+|+.....+...- ++.|+...-+ ..+++.++.. ..-.
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~-r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~ 662 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIA-REIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAE 662 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHH-HHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecC
Confidence 68899999999999999999999999999888766 8888755444 2233322211 1123
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc-chhhhHhh
Q 026853 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVI 208 (232)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~~~~~~ 208 (232)
|.--.++.+.|+-..+=+.|-||+.||-.+.+.+. |++++|....+. +..+|.+.
T Consensus 663 P~HK~kIVeaLq~~geivAMTGDGVNDApALK~Ad---IGIAMG~~GTdVaKeAsDMVL 718 (972)
T KOG0202|consen 663 PQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKAD---IGIAMGISGTDVAKEASDMVL 718 (972)
T ss_pred chhHHHHHHHHHhcCCEEEecCCCccchhhhhhcc---cceeecCCccHhhHhhhhcEE
Confidence 34445666666666677899999999999999999 888887555544 55555543
No 181
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.09 E-value=3.7e-05 Score=55.38 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=58.0
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHH----HHHHHhhhcCCccccce-eecccccCCCCCCHHHHHHHHHhcCC
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT----IESKISYQHGWNESFSV-IVGSDEVRTGKPSPDIFLEAAKRLNM 163 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~----~~~~l~~~~~l~~~~~~-~~~~~~~~~~kp~~~~~~~~~~~~~~ 163 (232)
...+.||+.+|+...-++|..++.+||+..+. ....| .+.|++..... ++.- ...+++..-.+.+-+.+
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nL-k~~g~~~~~~~~~llk---k~~k~Ke~R~~~v~k~~-- 193 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENL-KSEGLPQVLESHLLLK---KDKKSKEVRRQAVEKDY-- 193 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHH-HHcCcccccccceEEe---eCCCcHHHHHHHHhhcc--
Confidence 45789999999999999999999999997665 34456 66777664432 2222 22344444444444433
Q ss_pred CCCcEEEEeCchhhhhhhh
Q 026853 164 EPSSSLVIEDSVIGVVAGK 182 (232)
Q Consensus 164 ~~~~~~~vgD~~~Di~~a~ 182 (232)
.-|+.|||+..|.....
T Consensus 194 --~iVm~vGDNl~DF~d~~ 210 (274)
T COG2503 194 --KIVMLVGDNLDDFGDNA 210 (274)
T ss_pred --ceeeEecCchhhhcchh
Confidence 34789999998876543
No 182
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.06 E-value=1.8e-06 Score=64.27 Aligned_cols=69 Identities=13% Similarity=-0.064 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhc-------CCEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA-------GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~-------G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
+..|+.+++.+++++++.+.++++|||+.||+.|++.+ |..++.|..+ ..+..|++++++..++...|.
T Consensus 165 ~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g----~~~~~A~~~~~~~~~v~~~L~ 240 (244)
T TIGR00685 165 FVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG----SKKTVAKFHLTGPQQVLEFLG 240 (244)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC----CcCCCceEeCCCHHHHHHHHH
Confidence 34456899999999999999999999999999999999 6667777642 335668888888888776654
No 183
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.05 E-value=1.8e-05 Score=54.54 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=64.5
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc-ccc-ceeecccccCCCCCCHHHHHHHHHhcCCCC
Q 026853 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (232)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~-~~~-~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (232)
..+.++||+.++|+++++. +.++|+|++....+...+ +.++.. .+| +.+++.+.... +. .+.+-..++.+.
T Consensus 55 ~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl-~~ldp~~~~F~~ri~~rd~~~~--~~---~KdL~~i~~~d~ 127 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIA-KLIDPDGKYFGDRIISRDESGS--PH---TKSLLRLFPADE 127 (156)
T ss_pred EEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHH-HHhCcCCCeeccEEEEeccCCC--Cc---cccHHHHcCCCc
Confidence 3467899999999999966 999999999999999988 888877 478 66676665431 11 111213457788
Q ss_pred CcEEEEeCchhhhhhh
Q 026853 166 SSSLVIEDSVIGVVAG 181 (232)
Q Consensus 166 ~~~~~vgD~~~Di~~a 181 (232)
+.++.|+|++.--..-
T Consensus 128 ~~vvivDd~~~~~~~~ 143 (156)
T TIGR02250 128 SMVVIIDDREDVWPWH 143 (156)
T ss_pred ccEEEEeCCHHHhhcC
Confidence 8999999998544433
No 184
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=98.04 E-value=9.1e-06 Score=72.64 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=80.2
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccc----------------------------------
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS---------------------------------- 136 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~---------------------------------- 136 (232)
++.+++.+.++.|++.|++++++|+...+.+.... ...|+-..-.
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA-~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 709 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIG-YSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNL 709 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHH-HHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 68899999999999999999999999888776655 5555432110
Q ss_pred -------eeecccccC----------------------CCCCCHHHHHHHHHhcCCC-CCcEEEEeCchhhhhhhhhcCC
Q 026853 137 -------VIVGSDEVR----------------------TGKPSPDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGM 186 (232)
Q Consensus 137 -------~~~~~~~~~----------------------~~kp~~~~~~~~~~~~~~~-~~~~~~vgD~~~Di~~a~~~G~ 186 (232)
.++.+.... ..+-.|..-.++.+.++-. ..-|+++|||.||+.|.++|.+
T Consensus 710 ~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdV 789 (1057)
T TIGR01652 710 GDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADV 789 (1057)
T ss_pred ccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCe
Confidence 122221100 0111222223333333332 4679999999999999999994
Q ss_pred EEEEeCCCCCccccchhhhHhhhhccCcCccc
Q 026853 187 EVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (232)
Q Consensus 187 ~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l 218 (232)
.. ++.+ .........+|+++.+++.+..++
T Consensus 790 GI-gi~g-~eg~qA~~aaD~~i~~F~~L~~ll 819 (1057)
T TIGR01652 790 GV-GISG-KEGMQAVMASDFAIGQFRFLTKLL 819 (1057)
T ss_pred ee-EecC-hHHHHHHHhhhhhhhhHHHHHHHH
Confidence 43 4333 322234567999999888877665
No 185
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.04 E-value=4e-05 Score=48.71 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=57.5
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCEEEEeCCch---HHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCC
Q 026853 88 CKVKALPGANRLIKHLSCHGVPMALASNSHR---ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (232)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~---~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (232)
....++||+.++++.|++.|.+++++||++. ......| +.+|+....+.++++.. .....+++. ..
T Consensus 11 ~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~---------~~~~~l~~~-~~ 79 (101)
T PF13344_consen 11 NGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSGM---------AAAEYLKEH-KG 79 (101)
T ss_dssp ETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHHH---------HHHHHHHHH-TT
T ss_pred eCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChHH---------HHHHHHHhc-CC
Confidence 3557899999999999999999999999953 3455566 77888766677776533 333334332 33
Q ss_pred CCcEEEEeCchhhhhhhhhcCC
Q 026853 165 PSSSLVIEDSVIGVVAGKAAGM 186 (232)
Q Consensus 165 ~~~~~~vgD~~~Di~~a~~~G~ 186 (232)
...++++|-. ...+.++.+|+
T Consensus 80 ~~~v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 80 GKKVYVLGSD-GLREELREAGF 100 (101)
T ss_dssp SSEEEEES-H-HHHHHHHHTTE
T ss_pred CCEEEEEcCH-HHHHHHHHcCC
Confidence 5678888866 56666666664
No 186
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.94 E-value=4.5e-05 Score=68.27 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=36.8
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
++.|++++.++.|++.|+++.++|+.....+.... +..|+.
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA-~~~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVA-RECGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCC
Confidence 68899999999999999999999999998888776 778874
No 187
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.88 E-value=6e-05 Score=59.23 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=81.4
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCC--chHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEE
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 169 (232)
+.....++.+.+.+.|.++.++|+. +.+..+..| ...|.+..--.++.+.+....|..+..|..+++.-++++..++
T Consensus 100 pn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L-~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w~ 178 (635)
T COG5610 100 PNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFL-NSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKWI 178 (635)
T ss_pred ccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHH-HhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhheE
Confidence 3445678899999999999999998 445556666 7667655444567777888889999999999999999999999
Q ss_pred EEeCch-hhhhhhhhcCCEEEEe
Q 026853 170 VIEDSV-IGVVAGKAAGMEVVAV 191 (232)
Q Consensus 170 ~vgD~~-~Di~~a~~~G~~~i~v 191 (232)
++||+. .|..++++.|+.|...
T Consensus 179 H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 179 HCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred EecCchhhhhcCccccchhHHHH
Confidence 999999 7999999999876554
No 188
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.73 E-value=0.00017 Score=53.48 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=64.9
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccC--------------------------
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR-------------------------- 145 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~-------------------------- 145 (232)
..|.+.+.|.+|++.|..+++-|-+.++++...+ +.+++..+||.+++.....
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl-~~~~L~~~Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv 221 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSL-KELKLEGYFDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDV 221 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHH-HHhCCccccEEEEeCCccCCcCCccceeecccceEEeccceEEeC
Confidence 4566778899999999999999999999999999 8899999999998764211
Q ss_pred ---CCCC-CHHHHHHHHHhcCCCCCcEE-EEeCch-hhh
Q 026853 146 ---TGKP-SPDIFLEAAKRLNMEPSSSL-VIEDSV-IGV 178 (232)
Q Consensus 146 ---~~kp-~~~~~~~~~~~~~~~~~~~~-~vgD~~-~Di 178 (232)
.+-| .|..+...+++.|+..-.++ .|+|-. ||+
T Consensus 222 ~~~~~LPKSPrVVL~yL~k~gvny~KtiTLVDDL~~Nn~ 260 (297)
T PF05152_consen 222 TNVNNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSNNY 260 (297)
T ss_pred CcCCCCCCCCeehHHHHHHcCCceeeeEEEeccCcccCc
Confidence 1122 35667777888887765444 577766 554
No 189
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.70 E-value=0.00021 Score=59.09 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=64.0
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
++.+++.+.++.|++.|++++++|+.........- +.+|+ + ..-.|+.-..+.+.+.-....+.|
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia-~~lgi-------~-------~~~~p~~K~~~v~~l~~~g~~v~~ 411 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIA-KELGI-------F-------ARVTPEEKAALVEALQKKGRVVAM 411 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCc-------e-------eccCHHHHHHHHHHHHHCCCEEEE
Confidence 68899999999999999999999999998887666 77775 1 112344444555555444577999
Q ss_pred EeCchhhhhhhhhcCCE
Q 026853 171 IEDSVIGVVAGKAAGME 187 (232)
Q Consensus 171 vgD~~~Di~~a~~~G~~ 187 (232)
+||+.||..+.+.+++.
T Consensus 412 vGDg~nD~~al~~Advg 428 (499)
T TIGR01494 412 TGDGVNDAPALKKADVG 428 (499)
T ss_pred ECCChhhHHHHHhCCCc
Confidence 99999999999999944
No 190
>PLN03190 aminophospholipid translocase; Provisional
Probab=97.65 E-value=5.5e-05 Score=67.95 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=39.9
Q ss_pred CcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 166 ~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
.-|+++|||.||+.|.++|.+.. ++.+ ....+....+|+.+..++-|..+|+
T Consensus 872 ~vtlaIGDGaNDv~mIq~AdVGI-GIsG-~EG~qA~~aSDfaI~~Fr~L~rLLl 923 (1178)
T PLN03190 872 DMTLAIGDGANDVSMIQMADVGV-GISG-QEGRQAVMASDFAMGQFRFLVPLLL 923 (1178)
T ss_pred cEEEEECCCcchHHHHHhcCeee-eecC-chhHHHHHhhccchhhhHHHHHHHH
Confidence 45899999999999999998442 4433 4434456788999999988877776
No 191
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.64 E-value=0.00023 Score=50.65 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=57.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccc--c--ceeecccc--------cC--CCCCCHHHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES--F--SVIVGSDE--------VR--TGKPSPDIFLE 156 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~--~--~~~~~~~~--------~~--~~kp~~~~~~~ 156 (232)
...|++.+||+.+.+. +.++|.|.+....+...+ ..+++... + ..+..+.. .+ .-|+ +..
T Consensus 45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l-~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~ 118 (195)
T TIGR02245 45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKM-TELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGV 118 (195)
T ss_pred EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHH-HHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cHH
Confidence 5789999999999986 999999999999999888 76654221 1 11111110 01 0121 222
Q ss_pred HHHhcC--CCCCcEEEEeCchhhhhhhhhcCC
Q 026853 157 AAKRLN--MEPSSSLVIEDSVIGVVAGKAAGM 186 (232)
Q Consensus 157 ~~~~~~--~~~~~~~~vgD~~~Di~~a~~~G~ 186 (232)
+-+.++ .+.+++++|+|++....+--..|+
T Consensus 119 lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i 150 (195)
T TIGR02245 119 IWALLPEFYSMKNTIMFDDLRRNFLMNPQNGL 150 (195)
T ss_pred hhhhcccCCCcccEEEEeCCHHHHhcCCCCcc
Confidence 223443 377899999999965555444463
No 192
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.53 E-value=0.00074 Score=46.12 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHH---HHHHHhhhc-----CCccccceeecc-c------ccCCCCCCHHHHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQH-----GWNESFSVIVGS-D------EVRTGKPSPDIFLE 156 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~-----~l~~~~~~~~~~-~------~~~~~kp~~~~~~~ 156 (232)
..+|+.+++..++++||++.-+|..+.-. .+..| ... +++. ..++.+ + .-..-.++|+.|+.
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L-~~~~q~~~~lP~--Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL-AQHQQQGHNLPD--GPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH-HHHHhCCccCCC--CCEEECCcchhhhhhccccccChHHHHH
Confidence 56899999999999999999999997544 33333 333 2322 112222 1 11111234444443
Q ss_pred HH-Hhc----CCCCC-cEEEEeCchhhhhhhhhcCCE
Q 026853 157 AA-KRL----NMEPS-SSLVIEDSVIGVVAGKAAGME 187 (232)
Q Consensus 157 ~~-~~~----~~~~~-~~~~vgD~~~Di~~a~~~G~~ 187 (232)
.+ +.+ .-... =...||+..+|+.+-+++|+.
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 22 322 21122 244699999999999999985
No 193
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.0014 Score=49.17 Aligned_cols=55 Identities=25% Similarity=0.382 Sum_probs=41.7
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHH---HHHHHhhhcCCccccceeeccc
Q 026853 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSD 142 (232)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~l~~~~~~~~~~~ 142 (232)
....++||+.++|+.|+++|.+++++||++... ....|....+++...+.++++.
T Consensus 21 ~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~ 78 (269)
T COG0647 21 RGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSG 78 (269)
T ss_pred eCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHH
Confidence 345789999999999999999999999996443 4455623356666777777664
No 194
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.41 E-value=0.0017 Score=49.44 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=58.7
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCch---HHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCc
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHR---ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~---~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (232)
.++|++.++|++|++.|++++++||++. ......+ +.+|+....+.++++. ......+++......+
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l-~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~ 87 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKF-ARLGFNGLAEQLFSSA---------LCAARLLRQPPDAPKA 87 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEecHH---------HHHHHHHHhhCcCCCE
Confidence 5788999999999999999999999753 3333456 6678765555555442 2344455554444567
Q ss_pred EEEEeCchhhhhhhhhcCCEEE
Q 026853 168 SLVIEDSVIGVVAGKAAGMEVV 189 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G~~~i 189 (232)
++++|+.. ....++..|+..+
T Consensus 88 v~~iG~~~-~~~~l~~~g~~~~ 108 (279)
T TIGR01452 88 VYVIGEEG-LRAELDAAGIRLA 108 (279)
T ss_pred EEEEcCHH-HHHHHHHCCCEEe
Confidence 88999853 3445566776643
No 195
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=97.26 E-value=0.0036 Score=46.09 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=53.1
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc-cc---------cc--eeecc---cccCCCCCCHHH
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ES---------FS--VIVGS---DEVRTGKPSPDI 153 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~-~~---------~~--~~~~~---~~~~~~kp~~~~ 153 (232)
.+.+.+|+.++++.|.++++|+.|+|.+-.+.++..| ++.+.. +. || ..+.+ .-+.....+...
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL-~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~ 166 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVL-RQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESA 166 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHH-HHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHH-HHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccc
Confidence 5678999999999999999999999999999999999 555532 21 11 11111 001111111112
Q ss_pred HH--HHHHhcCCCCCcEEEEeCchhhhhhhhhc
Q 026853 154 FL--EAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (232)
Q Consensus 154 ~~--~~~~~~~~~~~~~~~vgD~~~Di~~a~~~ 184 (232)
+. ...+.+ -...+++..||+..|+.|+..+
T Consensus 167 l~~~~~~~~~-~~R~NvlLlGDslgD~~Ma~G~ 198 (246)
T PF05822_consen 167 LEDSPYFKQL-KKRTNVLLLGDSLGDLHMADGV 198 (246)
T ss_dssp HTTHHHHHCT-TT--EEEEEESSSGGGGTTTT-
T ss_pred ccCchHHHHh-ccCCcEEEecCccCChHhhcCC
Confidence 21 111222 2356799999999999999876
No 196
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00095 Score=53.68 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=69.6
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEE
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~v 171 (232)
.-||++|-+.+|++-|++.+.+|+..+-.....- ...|+++++.. .+|+--..+.++.+-...=+.|.
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA-~EAGVDdfiAe-----------atPEdK~~~I~~eQ~~grlVAMt 515 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVDDFIAE-----------ATPEDKLALIRQEQAEGRLVAMT 515 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHH-HHhCchhhhhc-----------CChHHHHHHHHHHHhcCcEEEEc
Confidence 5689999999999999999999999888776665 77787664432 23455566677777777778999
Q ss_pred eCchhhhhhhhhcCCEEEEeCC
Q 026853 172 EDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 172 gD~~~Di~~a~~~G~~~i~v~~ 193 (232)
||+.||-.+..++. +++++
T Consensus 516 GDGTNDAPALAqAd---Vg~AM 534 (681)
T COG2216 516 GDGTNDAPALAQAD---VGVAM 534 (681)
T ss_pred CCCCCcchhhhhcc---hhhhh
Confidence 99999999999999 66666
No 197
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.20 E-value=0.0078 Score=40.45 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=63.8
Q ss_pred CCCCCcHHHHHHHHHhC-C-CCEEEEeCCch-------HHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHh
Q 026853 90 VKALPGANRLIKHLSCH-G-VPMALASNSHR-------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~-g-~~~~i~s~~~~-------~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~ 160 (232)
..+.|...+-+++++.. | ..++++||+.- ......++...|++-.-+ ...++-...+.+.+....
T Consensus 60 ~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRH------s~kKP~ct~E~~~y~~~N 133 (190)
T KOG2961|consen 60 LAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRH------SVKKPACTAEEVEYHFGN 133 (190)
T ss_pred cccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEee------cccCCCccHHHHHHHhCC
Confidence 45667777778888874 3 67999998731 122333434444432111 111111123333333322
Q ss_pred cC-CCCCcEEEEeCch-hhhhhhhhcCCEEEEeCCCCCccc
Q 026853 161 LN-MEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTH 199 (232)
Q Consensus 161 ~~-~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~ 199 (232)
-. ..+++++||||.. .||.+|..+|.-++|...|.....
T Consensus 134 shv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~~~ 174 (190)
T KOG2961|consen 134 SHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRAEE 174 (190)
T ss_pred cccCChhHeEEEccchhhhHhhhhhccceeEEecccccccc
Confidence 12 5789999999999 999999999999999988654443
No 198
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=97.13 E-value=0.024 Score=46.15 Aligned_cols=83 Identities=10% Similarity=-0.053 Sum_probs=50.7
Q ss_pred HHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccce--------eecccccCCCCCCHHH-HHHHHHhcCCCCCcEE
Q 026853 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV--------IVGSDEVRTGKPSPDI-FLEAAKRLNMEPSSSL 169 (232)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~--------~~~~~~~~~~kp~~~~-~~~~~~~~~~~~~~~~ 169 (232)
.++..+..| +++++|..++-.++..+++++|.+..... .+++--. ++.-.+. ...+.+.++ +....+
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D~VvGTEL~v~~~G~~TG~~~--G~n~~ek~~~rl~~~~g-~~~~~v 176 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRADEVIGSELVVNRFGFATGFIR--GTDVDQSVANRVANLFV-DERPQL 176 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCceEEeeeEEEeeccEEEEEEe--cCccHHHHHHHHHHHhC-ccCcee
Confidence 566667777 99999999999999999666876543211 1111111 1111233 444445565 224478
Q ss_pred EEeCchhhhhhhhhcC
Q 026853 170 VIEDSVIGVVAGKAAG 185 (232)
Q Consensus 170 ~vgD~~~Di~~a~~~G 185 (232)
-+||+..|-....-|.
T Consensus 177 g~~~~~~~~~f~~~ck 192 (498)
T PLN02499 177 GLGRISASSSFLSLCK 192 (498)
T ss_pred cccCCcccchhhhhCc
Confidence 8898887777666655
No 199
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=97.06 E-value=0.0045 Score=46.82 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHH--------HhcCC-CCCcEEEEeCch-hhhhhhh---------------hcCCEEEEeCCC
Q 026853 146 TGKPSPDIFLEAA--------KRLNM-EPSSSLVIEDSV-IGVVAGK---------------AAGMEVVAVPSL 194 (232)
Q Consensus 146 ~~kp~~~~~~~~~--------~~~~~-~~~~~~~vgD~~-~Di~~a~---------------~~G~~~i~v~~~ 194 (232)
.+||.+-.|..+. +..+. ++..+.+|||++ +|+..|. .-||.+|+|.+|
T Consensus 269 ~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TG 342 (389)
T KOG1618|consen 269 LGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTG 342 (389)
T ss_pred cCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeee
Confidence 5677765554332 22233 456788999999 8999996 778889999886
No 200
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.06 E-value=0.01 Score=42.55 Aligned_cols=27 Identities=11% Similarity=-0.005 Sum_probs=20.2
Q ss_pred CCc-EEEEeCchhhhhhhhhcCCEEEEeC
Q 026853 165 PSS-SLVIEDSVIGVVAGKAAGMEVVAVP 192 (232)
Q Consensus 165 ~~~-~~~vgD~~~Di~~a~~~G~~~i~v~ 192 (232)
..+ ++.+|||+||+.+....... +.|.
T Consensus 208 ~~r~t~~~GDg~nD~Pl~ev~d~A-fiV~ 235 (274)
T COG3769 208 GARTTLGLGDGPNDAPLLEVMDYA-FIVK 235 (274)
T ss_pred ceeEEEecCCCCCcccHHHhhhhh-eeec
Confidence 344 88999999999999876644 4444
No 201
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.04 E-value=0.04 Score=39.88 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=30.9
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCC
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l 131 (232)
...+.||+.+.++.|.+. .+-+++|.+...++.+.- ...|+
T Consensus 81 sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a-~~ig~ 121 (315)
T COG4030 81 SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTA-SMIGV 121 (315)
T ss_pred hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHH-HhcCC
Confidence 357899999999999886 566777877777766655 55555
No 202
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.018 Score=45.15 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=72.4
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhc--CCccccceeecccc---------------cC-----------
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQH--GWNESFSVIVGSDE---------------VR----------- 145 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~--~l~~~~~~~~~~~~---------------~~----------- 145 (232)
+....++..+++.|.++.+.||+............+ +|..+|+.++.... ..
T Consensus 201 ~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~ 280 (424)
T KOG2469|consen 201 GTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTG 280 (424)
T ss_pred CccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCC
Confidence 334448899999999999999997766655553333 48888888765420 01
Q ss_pred ----CCCCCHHHHHHHHHhcCCCCCcEEEEeCch-hhhhh-hhhcCCEEEEeCCC
Q 026853 146 ----TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVA-GKAAGMEVVAVPSL 194 (232)
Q Consensus 146 ----~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~-a~~~G~~~i~v~~~ 194 (232)
.+.+.+.....+++.++....+++++||.. -||.- -+.-|+.++.|...
T Consensus 281 p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~pe 335 (424)
T KOG2469|consen 281 PLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPE 335 (424)
T ss_pred cchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehh
Confidence 223344567778888888889999999999 56654 56689999998773
No 203
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=96.98 E-value=0.0011 Score=42.06 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=29.2
Q ss_pred EEEeCCCcccccHHHHHHHH--HHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccH
Q 026853 12 VILDLDGTLLNTDGMFSEVL--KTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAK 72 (232)
Q Consensus 12 i~fDlDGTL~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (232)
++||+||||++....++.+. ...+++.+.+. ..+......+.. .+...++..|++...
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~--~~lTNns~~s~~-~~~~~L~~~Gi~~~~ 60 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPV--VFLTNNSSRSRE-EYAKKLKKLGIPVDE 60 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEE--EEEES-SSS-HH-HHHHHHHHTTTT--G
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCE--EEEeCCCCCCHH-HHHHHHHhcCcCCCc
Confidence 68999999998765554432 23344445322 222223333333 334444778877443
No 204
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=96.82 E-value=0.026 Score=50.62 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=36.5
Q ss_pred cHHhHHHHHHHHHHhhhc-------cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHH
Q 026853 71 AKHEFVNEVYSMFSDHLC-------KVKALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (232)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 122 (232)
+.++......+..++... +-++.+|+.+.++.|+++|++++++|+...+.+.
T Consensus 624 ~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAi 682 (1151)
T KOG0206|consen 624 DREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAI 682 (1151)
T ss_pred CHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHH
Confidence 344444455444443321 3367899999999999999999999988766543
No 205
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.0041 Score=53.15 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=70.9
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccce--eecccccC----------------CCCCCH-
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV--IVGSDEVR----------------TGKPSP- 151 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~--~~~~~~~~----------------~~kp~~- 151 (232)
+..||+++.++.++..|+.+-.+|+..-..++... ...|+...=+. .+.+.+.. ...+.|
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA-~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~ 725 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIA-RECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPN 725 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHH-HHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCc
Confidence 57899999999999999999999999988877666 77776443221 12221111 011111
Q ss_pred --HHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc-chhhhHh
Q 026853 152 --DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEV 207 (232)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~~~~~ 207 (232)
..+-+.++. ..+=+.+-||+.||-.+.++|. |+++||-...+. +..+|.+
T Consensus 726 DK~lLVk~L~~---~g~VVAVTGDGTNDaPALkeAD---VGlAMGIaGTeVAKEaSDII 778 (1034)
T KOG0204|consen 726 DKHLLVKGLIK---QGEVVAVTGDGTNDAPALKEAD---VGLAMGIAGTEVAKEASDII 778 (1034)
T ss_pred hHHHHHHHHHh---cCcEEEEecCCCCCchhhhhcc---cchhccccchhhhhhhCCeE
Confidence 222233332 2234567899999999999999 777887655554 4444433
No 206
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.031 Score=41.05 Aligned_cols=94 Identities=13% Similarity=0.184 Sum_probs=61.9
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecc----cccC----CCC-------CCHHHH
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS----DEVR----TGK-------PSPDIF 154 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~----~~~~----~~k-------p~~~~~ 154 (232)
+.+.+|..++++.|+++++|+.++|.+.-..++..+.+..++.+ +-.+++- ++.+ ..+ .+...+
T Consensus 137 i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~p-n~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~ 215 (298)
T KOG3128|consen 137 IALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHP-NVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVL 215 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCc-cHHhhhhhhhhcccchhhhhhHHHHHHHccchHHH
Confidence 44668899999999999999999999998888888855555443 2211111 1111 111 122334
Q ss_pred HHHHHhcC--CCCCcEEEEeCchhhhhhhhhc
Q 026853 155 LEAAKRLN--MEPSSSLVIEDSVIGVVAGKAA 184 (232)
Q Consensus 155 ~~~~~~~~--~~~~~~~~vgD~~~Di~~a~~~ 184 (232)
+...+.++ -...++++-||+..|+.|+..+
T Consensus 216 ~~~s~yf~~~~~~~nVillGdsigdl~ma~gv 247 (298)
T KOG3128|consen 216 QNESEYFHQLAGRVNVILLGDSIGDLHMADGV 247 (298)
T ss_pred HhhhHHHhhccCCceEEEeccccccchhhcCC
Confidence 44444443 3456799999999999998754
No 207
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=96.48 E-value=0.024 Score=41.43 Aligned_cols=81 Identities=14% Similarity=0.035 Sum_probs=57.7
Q ss_pred CCEEEEeCCchHHHHHHHhhhcCCcccc--ceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcC
Q 026853 108 VPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185 (232)
Q Consensus 108 ~~~~i~s~~~~~~~~~~l~~~~~l~~~~--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G 185 (232)
..-++||++.--....+. -.+++...| +.|+++-. ..+...|+++.+++|-+...-++|||+...-.+|+.++
T Consensus 176 ~vNvLVTs~qLVPaLaKc-LLy~L~~~f~ieNIYSa~k----vGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~ 250 (274)
T TIGR01658 176 CINVLVTSGQLIPSLAKC-LLFRLDTIFRIENVYSSIK----VGKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMN 250 (274)
T ss_pred eeEEEEEcCccHHHHHHH-HHhccCCccccccccchhh----cchHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcC
Confidence 334666666432222222 235666665 34444433 23467999999999998888999999999999999999
Q ss_pred CEEEEeCC
Q 026853 186 MEVVAVPS 193 (232)
Q Consensus 186 ~~~i~v~~ 193 (232)
++++-+..
T Consensus 251 wPFw~I~~ 258 (274)
T TIGR01658 251 WPFVKIDL 258 (274)
T ss_pred CCeEEeec
Confidence 99999987
No 208
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.012 Score=39.02 Aligned_cols=90 Identities=12% Similarity=0.200 Sum_probs=57.7
Q ss_pred hccCCCCCcHHHHHHHHHhCCCCEEEEeCC--chHHHHHHH---hhhcCCccccceeecccccCCCCCCHHHHHHHHHhc
Q 026853 87 LCKVKALPGANRLIKHLSCHGVPMALASNS--HRATIESKI---SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (232)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~--~~~~~~~~l---~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~ 161 (232)
+.++...|++.+.+++|-+. +.++|+|.. .+...+... .+.+.+-++-..++|+.-
T Consensus 64 FRnL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgnK------------------ 124 (180)
T COG4502 64 FRNLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGNK------------------ 124 (180)
T ss_pred hhhcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecCC------------------
Confidence 45678899999999999988 899999987 233333332 144455454455565522
Q ss_pred CCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCccc
Q 026853 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH 199 (232)
Q Consensus 162 ~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~ 199 (232)
|+- ..-++|+|++-.++..+... |++...++..+
T Consensus 125 niv-kaDilIDDnp~nLE~F~G~k---IlFdA~HN~ne 158 (180)
T COG4502 125 NIV-KADILIDDNPLNLENFKGNK---ILFDAHHNKNE 158 (180)
T ss_pred CeE-EeeEEecCCchhhhhccCce---EEEecccccCc
Confidence 221 12378999999999887665 66655444333
No 209
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=96.31 E-value=0.051 Score=40.73 Aligned_cols=102 Identities=11% Similarity=0.164 Sum_probs=63.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCC---chHHHHHHHhhhcCCccccceeeccccc-----CCCCCC-------HHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNS---HRATIESKISYQHGWNESFSVIVGSDEV-----RTGKPS-------PDIFL 155 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~---~~~~~~~~l~~~~~l~~~~~~~~~~~~~-----~~~kp~-------~~~~~ 155 (232)
.+.|++.+++++|+++|.+++++||+ +.......+ +.+|+....+.++++... ...++. ...+.
T Consensus 17 ~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l-~~~g~~~~~~~iit~~~~~~~~l~~~~~~~~v~~lg~~~l~ 95 (249)
T TIGR01457 17 ERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML-ASFDIPATLETVFTASMATADYMNDLKLEKTVYVIGEEGLK 95 (249)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEeeHHHHHHHHHHhcCCCCEEEEEcChhHH
Confidence 45679999999999999999999984 466666677 778887766777765311 111111 13466
Q ss_pred HHHHhcCCC----CCcEEEEeCch----hhhhhh---hhcCCEEEEeCC
Q 026853 156 EAAKRLNME----PSSSLVIEDSV----IGVVAG---KAAGMEVVAVPS 193 (232)
Q Consensus 156 ~~~~~~~~~----~~~~~~vgD~~----~Di~~a---~~~G~~~i~v~~ 193 (232)
..++.+|+. ..+.+++|... .++..+ .+.|...+..+.
T Consensus 96 ~~l~~~g~~~~~~~~~~Vvvg~~~~~~y~~l~~a~~~l~~g~~~i~tN~ 144 (249)
T TIGR01457 96 EAIKEAGYVEDKEKPDYVVVGLDRQIDYEKFATATLAIRKGAHFIGTNG 144 (249)
T ss_pred HHHHHcCCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCeEEEECC
Confidence 667766643 22456666542 233221 145877666555
No 210
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.14 E-value=0.0033 Score=55.05 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=55.7
Q ss_pred cCCCCCCHHHHHHHHH---hcCCCCCcEEEEeCchhhhhhhhhcCC-------------EEEEeCCCCCccccchhhhHh
Q 026853 144 VRTGKPSPDIFLEAAK---RLNMEPSSSLVIEDSVIGVVAGKAAGM-------------EVVAVPSLPKQTHRYTAADEV 207 (232)
Q Consensus 144 ~~~~kp~~~~~~~~~~---~~~~~~~~~~~vgD~~~Di~~a~~~G~-------------~~i~v~~~~~~~~~~~~~~~~ 207 (232)
...+..|+.+++.+++ .+|+.++.+++|||+.||..|.+.++- -+|.|.. ....|.+.
T Consensus 757 ~p~gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~------~~S~A~y~ 830 (854)
T PLN02205 757 KPQGVSKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTVGQ------KPSKAKYY 830 (854)
T ss_pred EeCCCCHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhhhhccCCcccccccceeEEECC------CCccCeEe
Confidence 3456667788888874 468999999999999999999998862 2333322 13556677
Q ss_pred hhhccCcCccccCCCCCCC
Q 026853 208 INSLLDLRPEKWGLPPFQD 226 (232)
Q Consensus 208 ~~~l~el~~~l~~~~~~~~ 226 (232)
+++..|+..+|..+.+.+.
T Consensus 831 L~d~~eV~~lL~~L~~~~~ 849 (854)
T PLN02205 831 LDDTAEIVRLMQGLASVSE 849 (854)
T ss_pred cCCHHHHHHHHHHHHhcch
Confidence 7888888877776665544
No 211
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=96.09 E-value=0.076 Score=39.95 Aligned_cols=68 Identities=16% Similarity=0.053 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcC---CEEEEeCCCCCccccc-hhhhHhhhhccCc
Q 026853 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG---MEVVAVPSLPKQTHRY-TAADEVINSLLDL 214 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G---~~~i~v~~~~~~~~~~-~~~~~~~~~l~el 214 (232)
+..++.++..++++......-+++.||...|=.+++.+. -.++.+..+....... ..+.....++..+
T Consensus 180 ~~~KG~a~~~i~~~~~~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~~~t~a~~~~~~~~~~~~~l~~~ 251 (266)
T COG1877 180 GVSKGAAIKYIMDELPFDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVGVGSTQAKFRLAGVYGFLRSLYKL 251 (266)
T ss_pred CcchHHHHHHHHhcCCCCCCcceecCCCCccHHHHHhhccCCCceEEecCCcccccccccccHHHHHHHHHH
Confidence 444778889899988877667999999999988888877 5666666664444442 3444444444443
No 212
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=95.97 E-value=0.0044 Score=40.93 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATI 121 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~ 121 (232)
.+.+++.+.++.+++.|+.++++|+.+....
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~ 54 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTY 54 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhh
Confidence 4566777888888888999999998876643
No 213
>PLN02580 trehalose-phosphatase
Probab=95.92 E-value=0.0076 Score=47.65 Aligned_cols=69 Identities=13% Similarity=-0.005 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHhcCCCCCc---EEEEeCchhhhhhhhhc-----CCEEEEeCCCCCccccchhhhHhhhhccCcCccc
Q 026853 147 GKPSPDIFLEAAKRLNMEPSS---SLVIEDSVIGVVAGKAA-----GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~~---~~~vgD~~~Di~~a~~~-----G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l 218 (232)
+..|..+++.+++.+++...+ .++|||..||..|++.+ |+. |.|..+ . ....|.+.+++..|+..+|
T Consensus 299 g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~-I~Vgn~--~--~~t~A~y~L~dp~eV~~~L 373 (384)
T PLN02580 299 DWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYG-ILVSSV--P--KESNAFYSLRDPSEVMEFL 373 (384)
T ss_pred CCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceE-EEEecC--C--CCccceEEcCCHHHHHHHH
Confidence 567789999999999988763 38999999999999963 533 444331 1 1345677888888877776
Q ss_pred cC
Q 026853 219 WG 220 (232)
Q Consensus 219 ~~ 220 (232)
..
T Consensus 374 ~~ 375 (384)
T PLN02580 374 KS 375 (384)
T ss_pred HH
Confidence 53
No 214
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=95.91 E-value=0.17 Score=37.63 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=48.3
Q ss_pred CCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCC
Q 026853 107 GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186 (232)
Q Consensus 107 g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~ 186 (232)
.+++++||......-++.++-...|.-.+|..+.-. +-++. .+++.++- -+||+|....++.|. .++
T Consensus 186 piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFLg----G~~K~----~vL~~~~p----hIFFDDQ~~H~~~a~-~~v 252 (264)
T PF06189_consen 186 PIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFLG----GLPKG----PVLKAFRP----HIFFDDQDGHLESAS-KVV 252 (264)
T ss_pred ceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHhC----CCchh----HHHHhhCC----CEeecCchhhhhHhh-cCC
Confidence 478999998866655666522223444555443222 22232 34455553 299999999999999 788
Q ss_pred EEEEeCCCC
Q 026853 187 EVVAVPSLP 195 (232)
Q Consensus 187 ~~i~v~~~~ 195 (232)
++..|..|.
T Consensus 253 ps~hVP~gv 261 (264)
T PF06189_consen 253 PSGHVPYGV 261 (264)
T ss_pred CEEeccCCc
Confidence 888887754
No 215
>PRK10444 UMP phosphatase; Provisional
Probab=95.83 E-value=0.11 Score=38.90 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=59.9
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHH---HHHHHhhhcCCccccceeeccccc-----CC--CC----CCHHHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEV-----RT--GK----PSPDIFLE 156 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~l~~~~~~~~~~~~~-----~~--~k----p~~~~~~~ 156 (232)
.+.|++.+++++|++.|.+++++||+.... ....+ ..+|+.-.-+.++++... .. .+ --...+..
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l-~~~G~~~~~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~~ 95 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF-ATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVIGEGALIH 95 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCCHhhEecHHHHHHHHHHhCCCCEEEEEcCHHHHH
Confidence 457899999999999999999999997644 34445 556775445556554211 00 00 01123445
Q ss_pred HHHhcCCC----CCcEEEEeCchh-hhhhhh------hcCCEEEEeCC
Q 026853 157 AAKRLNME----PSSSLVIEDSVI-GVVAGK------AAGMEVVAVPS 193 (232)
Q Consensus 157 ~~~~~~~~----~~~~~~vgD~~~-Di~~a~------~~G~~~i~v~~ 193 (232)
.++..|+. ..+.+++|...+ +..... ..|...+..+.
T Consensus 96 ~l~~~g~~~~~~~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~~~i~~n~ 143 (248)
T PRK10444 96 ELYKAGFTITDINPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNP 143 (248)
T ss_pred HHHHCcCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEECC
Confidence 55554543 235677777653 322222 33777666665
No 216
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=95.72 E-value=0.12 Score=38.32 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=39.3
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCc---hHHHHHHHhhhcCCccccceeecc
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSH---RATIESKISYQHGWNESFSVIVGS 141 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~---~~~~~~~l~~~~~l~~~~~~~~~~ 141 (232)
...++|++.+.+..++++|+++.++||+. .......+.+.+|+.-..+.++++
T Consensus 12 ~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits 67 (236)
T TIGR01460 12 GHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITS 67 (236)
T ss_pred CCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeH
Confidence 34578999999999999999999999775 344445563446776666666655
No 217
>PLN02580 trehalose-phosphatase
Probab=95.69 E-value=0.024 Score=44.89 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=29.0
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
.+.+++.+.|+.|.+. .+++|+|+.....+.+.+
T Consensus 141 ~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l 174 (384)
T PLN02580 141 LMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELV 174 (384)
T ss_pred cCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHh
Confidence 5667889999999988 589999999999887666
No 218
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.33 E-value=0.091 Score=42.46 Aligned_cols=92 Identities=20% Similarity=0.174 Sum_probs=70.0
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeeccc----ccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD----EVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~----~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
...+++..|+++|.-+++.|-+....+...+.++-. -++.-+ ......|+.+-++.+++++|+..+..+|
T Consensus 259 ~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp~------MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvF 332 (574)
T COG3882 259 TFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHPD------MILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVF 332 (574)
T ss_pred HHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCCC------eEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEE
Confidence 456778999999999999999988888877734332 122111 1224678899999999999999999999
Q ss_pred EeCchhhhhhhhhcCCEEEEeCC
Q 026853 171 IEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
++|++-..+-.+.-+- +..+..
T Consensus 333 iDD~p~ErE~vk~~~~-v~Vi~~ 354 (574)
T COG3882 333 IDDNPAERELVKRELP-VSVIEF 354 (574)
T ss_pred ecCCHHHHHHHHhcCc-eeeccC
Confidence 9999998888888775 344443
No 219
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.037 Score=46.65 Aligned_cols=121 Identities=12% Similarity=0.002 Sum_probs=68.6
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhh-cCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ-HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~-~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
-..++..-|..|+.++..-.++++...+..-...+.. ..+......++++.-.+..| ....+.+-++-+ ..+..
T Consensus 712 sr~dah~eL~~lR~k~~~aLvi~G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQK--A~v~~llq~~t~---krvc~ 786 (1051)
T KOG0210|consen 712 SRGDAHNELNNLRRKTDCALVIDGESLEFCLKYYEDEFIELVCELPAVVCCRCTPTQK--AQVVRLLQKKTG---KRVCA 786 (1051)
T ss_pred CchHHHHHHHHhhcCCCcEEEEcCchHHHHHHHHHHHHHHHHHhcCcEEEEecChhHH--HHHHHHHHHhhC---ceEEE
Confidence 3456777788888876666666776666644443211 12222333444432222222 222333333333 67999
Q ss_pred EeCchhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
|||+.||+.|.++|... |++.+ ....+..-.||+-+.-++-+..+|+
T Consensus 787 IGDGGNDVsMIq~A~~G-iGI~g-kEGkQASLAADfSItqF~Hv~rLLl 833 (1051)
T KOG0210|consen 787 IGDGGNDVSMIQAADVG-IGIVG-KEGKQASLAADFSITQFSHVSRLLL 833 (1051)
T ss_pred EcCCCccchheeecccc-eeeec-ccccccchhccccHHHHHHHHHHhh
Confidence 99999999999887744 44444 3333334567777777666665555
No 220
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=95.22 E-value=0.0091 Score=42.46 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=14.5
Q ss_pred cccEEEEeCCCccccc
Q 026853 8 LMSCVILDLDGTLLNT 23 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~ 23 (232)
.+|+|+||+||||++.
T Consensus 20 ~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 20 NIRLLICDVDGVFSDG 35 (183)
T ss_pred CceEEEEcCCeeeecC
Confidence 4899999999999975
No 221
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=95.18 E-value=0.0093 Score=41.10 Aligned_cols=14 Identities=43% Similarity=0.793 Sum_probs=12.9
Q ss_pred ccEEEEeCCCcccc
Q 026853 9 MSCVILDLDGTLLN 22 (232)
Q Consensus 9 ~k~i~fDlDGTL~~ 22 (232)
+|+|+||+||||++
T Consensus 1 ~~~~~~D~Dgtl~~ 14 (154)
T TIGR01670 1 IRLLILDVDGVLTD 14 (154)
T ss_pred CeEEEEeCceeEEc
Confidence 58999999999997
No 222
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.12 E-value=0.038 Score=41.62 Aligned_cols=49 Identities=18% Similarity=0.379 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchH---HHHHHHhhhcCCccccceeecc
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGS 141 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~---~~~~~l~~~~~l~~~~~~~~~~ 141 (232)
+.|++.+++++|+++|++++++||++.. .....+ +.+|+.-..+.++++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l-~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL-QRLGFDISEDEVFTP 73 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH-HHcCCCCCHHHeEcH
Confidence 6789999999999999999999997544 355566 667876555666654
No 223
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=94.93 E-value=0.014 Score=39.63 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=16.1
Q ss_pred cccccEEEEeCCCccccc
Q 026853 6 KKLMSCVILDLDGTLLNT 23 (232)
Q Consensus 6 ~~~~k~i~fDlDGTL~~~ 23 (232)
..++|+++||+||||.|.
T Consensus 5 a~~IkLli~DVDGvLTDG 22 (170)
T COG1778 5 AKNIKLLILDVDGVLTDG 22 (170)
T ss_pred hhhceEEEEeccceeecC
Confidence 357999999999999987
No 224
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=94.92 E-value=0.74 Score=41.56 Aligned_cols=72 Identities=7% Similarity=-0.018 Sum_probs=48.8
Q ss_pred HHHHHHHhhhcCCccccceeecc-----cccCCCCCCHHHHHHHHHhcCCCCCcE-EEEeCchh-hhhhhhhcCCEEEEe
Q 026853 119 ATIESKISYQHGWNESFSVIVGS-----DEVRTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSVI-GVVAGKAAGMEVVAV 191 (232)
Q Consensus 119 ~~~~~~l~~~~~l~~~~~~~~~~-----~~~~~~kp~~~~~~~~~~~~~~~~~~~-~~vgD~~~-Di~~a~~~G~~~i~v 191 (232)
..++..| ...++... .+++. +.++..-.+..+++++..++|++.+++ +|+|||.| |++....--..+|.+
T Consensus 924 ~elr~~L-r~~gLr~~--~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll~G~~~tvi~ 1000 (1050)
T TIGR02468 924 KELRKLL-RIQGLRCH--AVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLLGGLHKTVIL 1000 (1050)
T ss_pred HHHHHHH-HhCCCceE--EEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHhCCceeEEEE
Confidence 3455555 55555432 23332 345567778899999999999999999 55999999 988775333345555
Q ss_pred CC
Q 026853 192 PS 193 (232)
Q Consensus 192 ~~ 193 (232)
.+
T Consensus 1001 ~g 1002 (1050)
T TIGR02468 1001 KG 1002 (1050)
T ss_pred ec
Confidence 44
No 225
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=94.90 E-value=0.057 Score=47.63 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHH-HhCCCCEEEEeCCchHHHHHHH
Q 026853 92 ALPGANRLIKHL-SCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 92 ~~~~~~~~l~~l-~~~g~~~~i~s~~~~~~~~~~l 125 (232)
+.+++.++|+.| +..|..++|+|+.....++..+
T Consensus 617 p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f 651 (854)
T PLN02205 617 PSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWF 651 (854)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHh
Confidence 345677888887 5567889999999988877666
No 226
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.15 Score=44.09 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=66.4
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccc--------------------cceeecccccCCCCC
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES--------------------FSVIVGSDEVRTGKP 149 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~--------------------~~~~~~~~~~~~~kp 149 (232)
.++.++.++.++.|...+++++.+|+...-.+-+.. +..|+... .|..+. -+...+++
T Consensus 674 CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVa-k~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~-lp~~p~~~ 751 (1160)
T KOG0209|consen 674 CPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVA-KEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIV-LPLKPGKK 751 (1160)
T ss_pred CCCCccHHHHHHHHhccCceEEEEeCCCccchheeh-heeeeeccCceeeccCccCCCceeeEecCCCcee-ecCCCCcc
Confidence 467899999999999999999999999776655554 54554322 011000 01111111
Q ss_pred C---------------------------------------HHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEE
Q 026853 150 S---------------------------------------PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (232)
Q Consensus 150 ~---------------------------------------~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~ 190 (232)
+ |..-+.++..++--.--++|-||+.||+.+.+.|.+..+.
T Consensus 752 ~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVGALK~AhVGVAL 831 (1160)
T KOG0209|consen 752 KTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVGALKQAHVGVAL 831 (1160)
T ss_pred chhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecCCCcchhhhhhcccceeh
Confidence 1 1122334444444445699999999999999999977777
Q ss_pred eCCC
Q 026853 191 VPSL 194 (232)
Q Consensus 191 v~~~ 194 (232)
.++.
T Consensus 832 L~~~ 835 (1160)
T KOG0209|consen 832 LNNP 835 (1160)
T ss_pred hcCC
Confidence 7663
No 227
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=94.35 E-value=0.25 Score=38.62 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=60.3
Q ss_pred ccCCCCCcHHHHHHHHHhC----CCCEEEEeCCc---hHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHh
Q 026853 88 CKVKALPGANRLIKHLSCH----GVPMALASNSH---RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (232)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~----g~~~~i~s~~~---~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~ 160 (232)
....+.|++.++++.|+.. |+++.++||+. .......+.+.+|+.-..+.++++. ......++.
T Consensus 13 ~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~---------~~~~~ll~~ 83 (321)
T TIGR01456 13 RGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH---------SPYKSLVNK 83 (321)
T ss_pred CCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh---------HHHHHHHHH
Confidence 3446799999999999998 99999999986 3333333336677754444544432 233455555
Q ss_pred cCCCCCcEEEEeCchhhhhhhhhcCCEEEE
Q 026853 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (232)
Q Consensus 161 ~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~ 190 (232)
++ ..++++|.+. -...++.+|+..+.
T Consensus 84 ~~---~~v~viG~~~-~~~~l~~~G~~~vv 109 (321)
T TIGR01456 84 YE---KRILAVGTGS-VRGVAEGYGFQNVV 109 (321)
T ss_pred cC---CceEEEeChH-HHHHHHHcCCcccc
Confidence 43 2688999765 57777789977653
No 228
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=94.32 E-value=0.024 Score=39.71 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=15.3
Q ss_pred ccccEEEEeCCCccccc
Q 026853 7 KLMSCVILDLDGTLLNT 23 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~ 23 (232)
..+|+++||+||||.|.
T Consensus 5 ~~i~~~v~d~dGv~tdg 21 (169)
T TIGR02726 5 KNIKLVILDVDGVMTDG 21 (169)
T ss_pred ccCeEEEEeCceeeECC
Confidence 46999999999999986
No 229
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=93.74 E-value=0.04 Score=47.42 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=62.9
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc---------------cccee---------ecccccCC
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE---------------SFSVI---------VGSDEVRT 146 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~---------------~~~~~---------~~~~~~~~ 146 (232)
+|...+.+.+..++..|+++..+|+..+-...... +..|+-. ..+.+ +.+.+ .
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA-~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~e--L 666 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSE--L 666 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhh-hheeeecCCchhhhhhHHhcCCcccccCccccceEEEeccc--c
Confidence 46678889999999999999999998776665554 5555311 01111 11111 1
Q ss_pred CCCCHHHHHHHHHhcC------CCC--------------CcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcccc
Q 026853 147 GKPSPDIFLEAAKRLN------MEP--------------SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR 200 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~------~~~--------------~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~ 200 (232)
..-.++.+.++++.+. .+| +=|.+.||+.||-.+.+.+. |+|++|......
T Consensus 667 ~~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKAD---IGVAMGiaGSDv 737 (1019)
T KOG0203|consen 667 PDMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKAD---IGVAMGIAGSDV 737 (1019)
T ss_pred cccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccc---cceeeccccchH
Confidence 1112344444444332 111 23557899999999999999 666665444333
No 230
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=91.99 E-value=1.5 Score=31.65 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=51.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHH---HHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCc
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATI---ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~---~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (232)
...||..+.++.|+.++.++-.+||...+.- ...| .++|+.-.-+.++++- .+....+++-++.|
T Consensus 23 ~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL-~rlgf~v~eeei~tsl---------~aa~~~~~~~~lrP-- 90 (262)
T KOG3040|consen 23 AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERL-QRLGFDVSEEEIFTSL---------PAARQYLEENQLRP-- 90 (262)
T ss_pred ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHH-HHhCCCccHHHhcCcc---------HHHHHHHHhcCCCc--
Confidence 4789999999999988899999999976653 3344 5556543334444331 13344444445444
Q ss_pred EEEEeCch-hhhhhhhhcCCEEE
Q 026853 168 SLVIEDSV-IGVVAGKAAGMEVV 189 (232)
Q Consensus 168 ~~~vgD~~-~Di~~a~~~G~~~i 189 (232)
-+.|.|.. .|......-.-.++
T Consensus 91 ~l~v~d~a~~dF~gidTs~pn~V 113 (262)
T KOG3040|consen 91 YLIVDDDALEDFDGIDTSDPNCV 113 (262)
T ss_pred eEEEcccchhhCCCccCCCCCeE
Confidence 24444444 45554444433333
No 231
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=91.86 E-value=1.5 Score=28.85 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=56.0
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHH-HHHHHhhhcCCcccccee-----ecccccCCCCCCHHHHHHHHHhcC
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT-IESKISYQHGWNESFSVI-----VGSDEVRTGKPSPDIFLEAAKRLN 162 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~~l~~~~~~~-----~~~~~~~~~kp~~~~~~~~~~~~~ 162 (232)
.+..+++++..|..|++.|+.+++.|++.... +...| +.+....-+-.- +.....+ .-.+...+.+.-...|
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L-~~fkvk~~Gvlkps~e~ft~~~~g-~gsklghfke~~n~s~ 119 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGL-ETFKVKQTGVLKPSLEEFTFEAVG-DGSKLGHFKEFTNNSN 119 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHH-HHhccCcccccchhhhcCceeeec-CcccchhHHHHhhccC
Confidence 45789999999999999999999999996554 45555 655443211100 1111111 1223345677777778
Q ss_pred CCCCcEEEEeCchhh
Q 026853 163 MEPSSSLVIEDSVIG 177 (232)
Q Consensus 163 ~~~~~~~~vgD~~~D 177 (232)
+.-.+..+|+|...+
T Consensus 120 ~~~k~~~~fdDesrn 134 (144)
T KOG4549|consen 120 SIEKNKQVFDDESRN 134 (144)
T ss_pred cchhceeeecccccC
Confidence 877888888887643
No 232
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=91.73 E-value=1.4 Score=37.22 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=17.4
Q ss_pred EEEEeCchhhhhhhhhcCCE
Q 026853 168 SLVIEDSVIGVVAGKAAGME 187 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G~~ 187 (232)
...||...+|+-.-+.+|++
T Consensus 653 YAgFGNR~TDviSY~~VgVP 672 (738)
T KOG2116|consen 653 YAGFGNRITDVISYRQVGVP 672 (738)
T ss_pred eeecCCCcccceeeeeecCC
Confidence 44699999999999999985
No 233
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=91.71 E-value=0.42 Score=36.32 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcccc
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF 135 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~ 135 (232)
+...+.|+.|++.|++++++|+.+...+...+ +.+++..++
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~-~~l~l~~~~ 64 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLR-KELGLEDPF 64 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCCCE
Confidence 45678899999999999999999999888888 888876544
No 234
>PLN03017 trehalose-phosphatase
Probab=91.57 E-value=0.1 Score=41.12 Aligned_cols=71 Identities=13% Similarity=-0.105 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHhcCCCCC---cEEEEeCchhhhhhhhhcC----CEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 147 GKPSPDIFLEAAKRLNMEPS---SSLVIEDSVIGVVAGKAAG----MEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~---~~~~vgD~~~Di~~a~~~G----~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
...|+.+++.+++.++.... -.+|+||...|-.+++.+. .-+|.|.. . .....|.+.+++.+|+..+|.
T Consensus 281 ~~dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG~--~--~k~T~A~y~L~dp~eV~~fL~ 356 (366)
T PLN03017 281 EWDKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVSK--F--PKDTDASYSLQDPSEVMDFLA 356 (366)
T ss_pred CCCHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEECC--C--CCCCcceEeCCCHHHHHHHHH
Confidence 45678899999999987533 4899999999999988762 23455543 1 113557778888888877765
Q ss_pred CC
Q 026853 220 GL 221 (232)
Q Consensus 220 ~~ 221 (232)
.+
T Consensus 357 ~L 358 (366)
T PLN03017 357 RL 358 (366)
T ss_pred HH
Confidence 44
No 235
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=91.14 E-value=0.58 Score=35.42 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~ 133 (232)
+...+.|++++++|+.+++.|+++...+...+ +.+++..
T Consensus 23 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 61 (270)
T PRK10513 23 PAVKQAIAAARAKGVNVVLTTGRPYAGVHRYL-KELHMEQ 61 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCChHHHHHHH-HHhCCCC
Confidence 44568899999999999999999999888777 7777653
No 236
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=91.03 E-value=2 Score=32.87 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=33.6
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHh--hhcCCc
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWN 132 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~--~~~~l~ 132 (232)
.-.+.||+.+.++.|++.|..+.++||+....-+...+ +.+|+.
T Consensus 36 g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 36 GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 45789999999999999999999999996554433331 455654
No 237
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=90.98 E-value=0.49 Score=42.27 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=28.2
Q ss_pred CCCCcHHHHHHHHHhC-CCCEEEEeCCchHHHHHHH
Q 026853 91 KALPGANRLIKHLSCH-GVPMALASNSHRATIESKI 125 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~-g~~~~i~s~~~~~~~~~~l 125 (232)
.+.|++.++|+.|.+. +..++|+|+.....++..+
T Consensus 622 ~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~f 657 (934)
T PLN03064 622 RLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENF 657 (934)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHh
Confidence 4667888889888875 5679999999988887666
No 238
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=90.83 E-value=0.61 Score=34.38 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~ 133 (232)
+...+.|++|++.|++++++|+.+...+...+ +.+|+..
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~-~~lg~~~ 56 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYR-EELGVEP 56 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCC
Confidence 45678999999999999999999998888777 7788754
No 239
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=90.25 E-value=0.48 Score=35.16 Aligned_cols=65 Identities=20% Similarity=0.090 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHhcCCC---CCcEEEEeCchhhhhhhhhcCCE-----EEEeCCCCCccccchhhhHhhhhc
Q 026853 146 TGKPSPDIFLEAAKRLNME---PSSSLVIEDSVIGVVAGKAAGME-----VVAVPSLPKQTHRYTAADEVINSL 211 (232)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~---~~~~~~vgD~~~Di~~a~~~G~~-----~i~v~~~~~~~~~~~~~~~~~~~l 211 (232)
....|..+++.+++.++.. +.-++++||...|-.+.+.+.-. ++.|..... ......|.+.+++.
T Consensus 162 ~~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~~~-~~~~t~A~y~l~~p 234 (235)
T PF02358_consen 162 PGVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSVSV-GEKPTAASYRLDDP 234 (235)
T ss_dssp TT--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES-------------------
T ss_pred CCCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEeecc-cccccccccccccC
Confidence 3444788999999999876 77899999999999998886543 455555222 23345666666553
No 240
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=90.09 E-value=0.54 Score=41.53 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=25.3
Q ss_pred CCCCcHHHHHHHHHhC-CCCEEEEeCCchHHHHHHH
Q 026853 91 KALPGANRLIKHLSCH-GVPMALASNSHRATIESKI 125 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~-g~~~~i~s~~~~~~~~~~l 125 (232)
.+.|++.++|..|.+. +-.++|+|+.....+++.+
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~ 567 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNF 567 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHh
Confidence 4556777788888764 4578888888877777665
No 241
>PLN03017 trehalose-phosphatase
Probab=90.09 E-value=0.13 Score=40.57 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=18.3
Q ss_pred ccEEEEeCCCccc---c-cHH-HHHHHHHHHHHHc
Q 026853 9 MSCVILDLDGTLL---N-TDG-MFSEVLKTFLVKY 38 (232)
Q Consensus 9 ~k~i~fDlDGTL~---~-~~~-~~~~~~~~~~~~~ 38 (232)
-.+|++|+||||+ + .+. .+.....++++++
T Consensus 111 ~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~L 145 (366)
T PLN03017 111 QIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKL 145 (366)
T ss_pred CeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHH
Confidence 4678899999999 3 333 3344444444443
No 242
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=90.08 E-value=0.16 Score=37.87 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.7
Q ss_pred ccEEEEeCCCccccc
Q 026853 9 MSCVILDLDGTLLNT 23 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~ 23 (232)
-++++||+||||++.
T Consensus 3 ~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI 17 (244)
T ss_pred cEEEEEecCccccCC
Confidence 368999999999963
No 243
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=90.07 E-value=0.59 Score=34.08 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=33.5
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~ 133 (232)
+.+...+.|++|++.|++++++|+++...+...+ +.+++..
T Consensus 19 i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~-~~l~~~~ 59 (215)
T TIGR01487 19 ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALA-VLIGTSG 59 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHH-HHhCCCC
Confidence 4456678899999999999999999988888777 7777653
No 244
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=89.92 E-value=0.71 Score=33.78 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
.++.|+.|++.|++++++|+.+...+...+ +.+++.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~-~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQ-KALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 467899999999999999999999998888 778875
No 245
>PLN02151 trehalose-phosphatase
Probab=89.83 E-value=0.18 Score=39.62 Aligned_cols=71 Identities=13% Similarity=-0.099 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHhcCCCCC---cEEEEeCchhhhhhhhhcC----CEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 147 GKPSPDIFLEAAKRLNMEPS---SSLVIEDSVIGVVAGKAAG----MEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~---~~~~vgD~~~Di~~a~~~G----~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
+..|+.+++.+++.++.... -++|+||...|-.+++.+. .-.|.|..+. ....|.+.+++.+|+..+|.
T Consensus 267 ~~dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~Vg~~~----k~T~A~y~L~dp~eV~~~L~ 342 (354)
T PLN02151 267 KWDKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGLGILVSKYA----KETNASYSLQEPDEVMEFLE 342 (354)
T ss_pred CCCHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCccEEeccCC----CCCcceEeCCCHHHHHHHHH
Confidence 44678899999999886543 2899999999999988652 1235554311 13467788888888877765
Q ss_pred CC
Q 026853 220 GL 221 (232)
Q Consensus 220 ~~ 221 (232)
.+
T Consensus 343 ~L 344 (354)
T PLN02151 343 RL 344 (354)
T ss_pred HH
Confidence 43
No 246
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=89.72 E-value=0.76 Score=33.80 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~ 133 (232)
+.+...+.|.++++.|++++++|+++...+...+ +.+++..
T Consensus 21 i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 61 (230)
T PRK01158 21 LSLKAVEAIRKAEKLGIPVILATGNVLCFARAAA-KLIGTSG 61 (230)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCCC
Confidence 4456678899999999999999999998887777 7777754
No 247
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=89.46 E-value=1.3 Score=29.42 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=12.4
Q ss_pred cEEEEeCCCccccc
Q 026853 10 SCVILDLDGTLLNT 23 (232)
Q Consensus 10 k~i~fDlDGTL~~~ 23 (232)
|+|+||+||||+..
T Consensus 2 K~i~~DiDGTL~~~ 15 (126)
T TIGR01689 2 KRLVMDLDNTITLT 15 (126)
T ss_pred CEEEEeCCCCcccC
Confidence 79999999999853
No 248
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=89.41 E-value=3.1 Score=32.94 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=55.3
Q ss_pred CCCEEEEeCCchHHHHHHHhhhcCCcccc--ceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhc
Q 026853 107 GVPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (232)
Q Consensus 107 g~~~~i~s~~~~~~~~~~l~~~~~l~~~~--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~ 184 (232)
++.-++||+...-....++ -.+||...| ..|++.-..+ +...|+++..++|- .-.-++|||+...-.+|++.
T Consensus 370 ncvnVlvTttqLipalaKv-LL~gLg~~fpiENIYSa~kiG----KescFerI~~RFg~-K~~yvvIgdG~eee~aAK~l 443 (468)
T KOG3107|consen 370 NCVNVLVTTTQLIPALAKV-LLYGLGSSFPIENIYSATKIG----KESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKAL 443 (468)
T ss_pred ceeEEEEeccchhHHHHHH-HHHhcCCcccchhhhhhhhcc----HHHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhh
Confidence 4556677777543333333 335665554 3344433322 35789999999997 45677899999999999999
Q ss_pred CCEEEEeCC
Q 026853 185 GMEVVAVPS 193 (232)
Q Consensus 185 G~~~i~v~~ 193 (232)
.|++.-++.
T Consensus 444 n~PfwrI~~ 452 (468)
T KOG3107|consen 444 NMPFWRISS 452 (468)
T ss_pred CCceEeecc
Confidence 999888876
No 249
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=89.15 E-value=9.2 Score=29.87 Aligned_cols=100 Identities=9% Similarity=0.116 Sum_probs=70.3
Q ss_pred CCCCCcHHHHHHHHHhC---CCCEEEEeCCchHHHHHHHhhhcCCccccceeec-cccc--CCCCCCHHHHHHHHHhcCC
Q 026853 90 VKALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEV--RTGKPSPDIFLEAAKRLNM 163 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~-~~~~--~~~kp~~~~~~~~~~~~~~ 163 (232)
..+.|+..++++..+.. |+.+.++++.+....++.. .+|. -.+.. ...+ +.+-.+|+.++.+.+...+
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~--~~g~----~avmPl~~pIGsg~gv~~p~~i~~~~e~~~v 250 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLE--DAGA----VAVMPLGAPIGSGLGIQNPYTIRLIVEGATV 250 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH--hcCC----EEEeeccccccCCCCCCCHHHHHHHHHcCCC
Confidence 34678898998887776 9999788888777666443 3454 11111 2222 2344588999999998554
Q ss_pred CCCcEEEEeCch---hhhhhhhhcCCEEEEeCCCCCccc
Q 026853 164 EPSSSLVIEDSV---IGVVAGKAAGMEVVAVPSLPKQTH 199 (232)
Q Consensus 164 ~~~~~~~vgD~~---~Di~~a~~~G~~~i~v~~~~~~~~ 199 (232)
+ +.+|-+. +|+..|-++|...++++++-....
T Consensus 251 p----VivdAGIg~~sda~~AmelGadgVL~nSaIa~a~ 285 (326)
T PRK11840 251 P----VLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAK 285 (326)
T ss_pred c----EEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCC
Confidence 3 6677665 799999999999999999654433
No 250
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=89.01 E-value=0.57 Score=32.41 Aligned_cols=17 Identities=47% Similarity=0.509 Sum_probs=15.0
Q ss_pred ccccEEEEeCCCccccc
Q 026853 7 KLMSCVILDLDGTLLNT 23 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~ 23 (232)
..+|++++|+|+||+..
T Consensus 26 ~Gikgvi~DlDNTLv~w 42 (175)
T COG2179 26 HGIKGVILDLDNTLVPW 42 (175)
T ss_pred cCCcEEEEeccCceecc
Confidence 46899999999999965
No 251
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=88.91 E-value=0.95 Score=33.97 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
.+...+.|++|+++|+.++++|+++...+...+ +.+++.
T Consensus 18 ~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~-~~~~~~ 56 (256)
T TIGR00099 18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNIL-KELGLD 56 (256)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCC
Confidence 345668899999999999999999998888777 777765
No 252
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=88.43 E-value=0.89 Score=34.49 Aligned_cols=41 Identities=7% Similarity=0.072 Sum_probs=33.7
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccc
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES 134 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~ 134 (232)
.+..++.|++|+++|+.+++.|+++...+...+ +.+++..+
T Consensus 21 ~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~~ 61 (272)
T PRK15126 21 GEKTLSTLARLRERDITLTFATGRHVLEMQHIL-GALSLDAY 61 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCCc
Confidence 344568899999999999999999999888887 77777543
No 253
>PTZ00445 p36-lilke protein; Provisional
Probab=88.31 E-value=0.41 Score=34.61 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.5
Q ss_pred ccccEEEEeCCCcccc
Q 026853 7 KLMSCVILDLDGTLLN 22 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~ 22 (232)
..+|+|++|+|.||+.
T Consensus 41 ~GIk~Va~D~DnTlI~ 56 (219)
T PTZ00445 41 CGIKVIASDFDLTMIT 56 (219)
T ss_pred cCCeEEEecchhhhhh
Confidence 3689999999999997
No 254
>PLN02151 trehalose-phosphatase
Probab=88.29 E-value=0.33 Score=38.22 Aligned_cols=30 Identities=30% Similarity=0.466 Sum_probs=18.4
Q ss_pred ccEEEEeCCCccc----ccHH-HHHHHHHHHHHHc
Q 026853 9 MSCVILDLDGTLL----NTDG-MFSEVLKTFLVKY 38 (232)
Q Consensus 9 ~k~i~fDlDGTL~----~~~~-~~~~~~~~~~~~~ 38 (232)
-.++++|+||||+ +.+. ........+++++
T Consensus 98 ~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~L 132 (354)
T PLN02151 98 QIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKL 132 (354)
T ss_pred ceEEEEecCccCCCCCCCcccccCCHHHHHHHHHH
Confidence 3578899999999 3333 2334444455444
No 255
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=88.26 E-value=8.6 Score=28.44 Aligned_cols=82 Identities=16% Similarity=0.302 Sum_probs=57.1
Q ss_pred CCCCEEEEeCCc---hHHHHHHHhhhc-CCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCch--hhhh
Q 026853 106 HGVPMALASNSH---RATIESKISYQH-GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV--IGVV 179 (232)
Q Consensus 106 ~g~~~~i~s~~~---~~~~~~~l~~~~-~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~--~Di~ 179 (232)
.++.+.+++.+. ++.+.....+.+ .|.+-|-.+++.. ..-|-|..-+++++..|++ |+.|||.+ -+-.
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN---~a~PGP~~ARE~l~~~~iP---~IvI~D~p~~K~~d 103 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPN---PAAPGPKKAREILKAAGIP---CIVIGDAPGKKVKD 103 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCC---CCCCCchHHHHHHHhcCCC---EEEEcCCCccchHH
Confidence 378888888773 444443331221 4555555444443 3567788889999999985 89999999 4678
Q ss_pred hhhhcCCEEEEeCC
Q 026853 180 AGKAAGMEVVAVPS 193 (232)
Q Consensus 180 ~a~~~G~~~i~v~~ 193 (232)
..++.|+..|.+..
T Consensus 104 ~l~~~g~GYIivk~ 117 (277)
T PRK00994 104 AMEEQGLGYIIVKA 117 (277)
T ss_pred HHHhcCCcEEEEec
Confidence 88899998888875
No 256
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=88.17 E-value=5 Score=29.64 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=60.1
Q ss_pred CCCCCcHHHHHH---HHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecc-cccCCCCCCHHHHHHHHHhcCCCC
Q 026853 90 VKALPGANRLIK---HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS-DEVRTGKPSPDIFLEAAKRLNMEP 165 (232)
Q Consensus 90 ~~~~~~~~~~l~---~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~~~~kp~~~~~~~~~~~~~~~~ 165 (232)
..+.|+..++++ .|.+.|+.+.-+++.+.-..+ .| ...|..... ...+ -..+.+-.++..++.++++.+++
T Consensus 103 ~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~ak-rL-~d~GcaavM--PlgsPIGSg~Gi~n~~~l~~i~~~~~vP- 177 (247)
T PF05690_consen 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAK-RL-EDAGCAAVM--PLGSPIGSGRGIQNPYNLRIIIERADVP- 177 (247)
T ss_dssp TT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHH-HH-HHTT-SEBE--EBSSSTTT---SSTHHHHHHHHHHGSSS-
T ss_pred CCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHH-HH-HHCCCCEEE--ecccccccCcCCCCHHHHHHHHHhcCCc-
Confidence 346788877775 466789999999999887665 44 455643211 0111 12245667889999999999886
Q ss_pred CcEEEEeCch---hhhhhhhhcCCEEEEeCCC
Q 026853 166 SSSLVIEDSV---IGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 166 ~~~~~vgD~~---~Di~~a~~~G~~~i~v~~~ 194 (232)
+.|+-+. +|...|-++|...+++|+.
T Consensus 178 ---vIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 178 ---VIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp ---BEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred ---EEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 5555554 8999999999999999984
No 257
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=88.08 E-value=9.1 Score=28.72 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=70.0
Q ss_pred CCCCCcHHHHHHH---HHhCCCCEEEEeCCchHHHHHHHhhhcCCcccc--ceeecccccCCCCCCHHHHHHHHHhcCCC
Q 026853 90 VKALPGANRLIKH---LSCHGVPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (232)
Q Consensus 90 ~~~~~~~~~~l~~---l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (232)
..+.|+..++++. |-+.|+.+.-+++.+.-..+ .| +..|..... ..-| ..+.+-.++..++.+++..+++
T Consensus 117 ~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~-rL-ed~Gc~aVMPlgsPI---GSg~Gl~n~~~l~~i~e~~~vp 191 (267)
T CHL00162 117 KYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAK-HL-EDIGCATVMPLGSPI---GSGQGLQNLLNLQIIIENAKIP 191 (267)
T ss_pred cccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHH-HH-HHcCCeEEeeccCcc---cCCCCCCCHHHHHHHHHcCCCc
Confidence 3467888777754 66789999999999887665 44 455643211 1111 2245667889999999987765
Q ss_pred CCcEEEEeCch---hhhhhhhhcCCEEEEeCCCCCc
Q 026853 165 PSSSLVIEDSV---IGVVAGKAAGMEVVAVPSLPKQ 197 (232)
Q Consensus 165 ~~~~~~vgD~~---~Di~~a~~~G~~~i~v~~~~~~ 197 (232)
+.+|-+. +|+..|-++|...++++++-..
T Consensus 192 ----VivdAGIgt~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 192 ----VIIDAGIGTPSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred ----EEEeCCcCCHHHHHHHHHcCCCEEeecceeec
Confidence 6666554 7999999999999999996443
No 258
>PRK10976 putative hydrolase; Provisional
Probab=88.06 E-value=1 Score=34.04 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~ 133 (232)
+...+.|++++++|+++++.|+++...+...+ +.+++..
T Consensus 22 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 60 (266)
T PRK10976 22 PYAKETLKLLTARGIHFVFATGRHHVDVGQIR-DNLEIKS 60 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence 44568899999999999999999999888777 7777754
No 259
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=87.92 E-value=1.3 Score=33.31 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=31.8
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
...+.++.|++.|++++++|+++...+...+ +.+++.
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~-~~~~~~ 56 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLR-KELGLE 56 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 3568899999999999999999999888888 777765
No 260
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=87.90 E-value=1.1 Score=32.86 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
.+...+.|+++++.|++++++|+++...+...+ +.+++.
T Consensus 17 ~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~-~~l~~~ 55 (225)
T TIGR01482 17 NESALEAIRKAESVGIPVVLVTGNSVQFARALA-KLIGTP 55 (225)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCC
Confidence 344567788899999999999999988887776 667754
No 261
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=87.71 E-value=1.2 Score=33.63 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~ 133 (232)
+.+..++.|++++++|++++++|+++...+...+ +.+++..
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~-~~l~~~~ 61 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVLSIL-EELGLDG 61 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCc
Confidence 4556678899999999999999999998888888 8888875
No 262
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=87.42 E-value=1.3 Score=33.56 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=32.8
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~ 133 (232)
.|...+.|.+++++|+.+++.|+++...+...+ +.+++..
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 61 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGRHHVAIHPFY-QALALDT 61 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence 344568899999999999999999998888777 7777653
No 263
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=86.71 E-value=1.6 Score=33.44 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~ 133 (232)
+.+.+.|++|+++|+++++.|+.+...+.... +.+++..
T Consensus 21 ~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~-~~Lgl~~ 59 (302)
T PRK12702 21 GAARQALAALERRSIPLVLYSLRTRAQLEHLC-RQLRLEH 59 (302)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCCCC
Confidence 44678899999999999999999999888777 7788764
No 264
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=86.32 E-value=14 Score=28.84 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=55.2
Q ss_pred cCCCCCcHHHHHHHHHhCC-CCEEEEeCCchHHHH---HHHhhhcCC----------ccccceeecccccCCCCCCHHHH
Q 026853 89 KVKALPGANRLIKHLSCHG-VPMALASNSHRATIE---SKISYQHGW----------NESFSVIVGSDEVRTGKPSPDIF 154 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g-~~~~i~s~~~~~~~~---~~l~~~~~l----------~~~~~~~~~~~~~~~~kp~~~~~ 154 (232)
...++||+..+.+.|.+.| .++..+||++-.... +.+ ...++ ...++.++.+.... +...+
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi-~~~~~P~GPl~L~~~g~~~~~i~~sga~r----K~~~l 268 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFI-TNRNFPYGPLLLRRWGGVLDNIIESGAAR----KGQSL 268 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHH-hcCCCCCCchhHhhcCCcccccccchhhh----cccHH
Confidence 4578999999999999987 899999999876543 222 21111 12234444333222 23345
Q ss_pred HHHHHhcCCCCCcEEEEeCch-hhhhhh
Q 026853 155 LEAAKRLNMEPSSSLVIEDSV-IGVVAG 181 (232)
Q Consensus 155 ~~~~~~~~~~~~~~~~vgD~~-~Di~~a 181 (232)
..+++++. ....+.|||+- .|.+.-
T Consensus 269 ~nil~~~p--~~kfvLVGDsGE~DpeIY 294 (373)
T COG4850 269 RNILRRYP--DRKFVLVGDSGEHDPEIY 294 (373)
T ss_pred HHHHHhCC--CceEEEecCCCCcCHHHH
Confidence 55666654 45689999998 687753
No 265
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=86.12 E-value=1.4 Score=32.64 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
+.+...+.|+.|+++|+.+++.|+++...+...+ ..+++.
T Consensus 16 i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~-~~~~~~ 55 (254)
T PF08282_consen 16 ISPETIEALKELQEKGIKLVIATGRSYSSIKRLL-KELGID 55 (254)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHH-HHTTHC
T ss_pred eCHHHHHHHHhhcccceEEEEEccCccccccccc-ccccch
Confidence 4567788999999999999999999999988888 777765
No 266
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=85.38 E-value=13 Score=27.73 Aligned_cols=99 Identities=12% Similarity=0.150 Sum_probs=66.4
Q ss_pred CCCCCcHHHHHHHHHhC---CCCEEEEeCCchHHHHHHHhhhcCCccc--cceeecccccCCCCCCHHHHHHHHHhcCCC
Q 026853 90 VKALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNES--FSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (232)
..+.|+..++++..+.. |+.+.-+++.+....++.. .+|.... ....+++. .+..+++.++.+.+..+++
T Consensus 103 ~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~--~~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~vp 177 (248)
T cd04728 103 KTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLE--DAGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADVP 177 (248)
T ss_pred cccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH--HcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCCc
Confidence 34688999999887776 9988867777777665443 3453222 11223322 3445688888887775543
Q ss_pred CCcEEEEeCc---hhhhhhhhhcCCEEEEeCCCCCc
Q 026853 165 PSSSLVIEDS---VIGVVAGKAAGMEVVAVPSLPKQ 197 (232)
Q Consensus 165 ~~~~~~vgD~---~~Di~~a~~~G~~~i~v~~~~~~ 197 (232)
+.+|=+ +.|+..+-++|...++++++-..
T Consensus 178 ----VI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 178 ----VIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred ----EEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 455543 47999999999999999996554
No 267
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=84.67 E-value=2.2 Score=32.74 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.2
Q ss_pred cCCCCCcHHHHHHHHHhCC-CCEEEEeCCchHHHHHHH
Q 026853 89 KVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKI 125 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l 125 (232)
...++|.+.++++.+++.| .+++++||+..+.+.+.+
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L 127 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEEL 127 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHh
Confidence 5678999999999999999 799999999997666555
No 268
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=84.44 E-value=2 Score=32.63 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
+..++.|.+|+++|+++++.|+++...+...+ +.+++.
T Consensus 27 ~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~-~~l~~~ 64 (271)
T PRK03669 27 QPAAPWLTRLREAQVPVILCSSKTAAEMLPLQ-QTLGLQ 64 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHhCCC
Confidence 34567899999999999999999999988888 778874
No 269
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=84.10 E-value=0.67 Score=31.62 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=13.1
Q ss_pred cEEEEeCCCcccccH
Q 026853 10 SCVILDLDGTLLNTD 24 (232)
Q Consensus 10 k~i~fDlDGTL~~~~ 24 (232)
+.+++|+||||+.+.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 578999999999873
No 270
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=83.44 E-value=0.78 Score=32.73 Aligned_cols=49 Identities=12% Similarity=-0.043 Sum_probs=30.9
Q ss_pred CCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCch----hhhhhh
Q 026853 130 GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV----IGVVAG 181 (232)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~----~Di~~a 181 (232)
|+.-.+...++-+..+.+..+...++++-.. + -+++-||||.. ||.+..
T Consensus 174 gLtFSIGGQISfDvFP~GWDKtyCLqhle~d-g--f~~IhFFGDkT~~GGNDyEIf 226 (252)
T KOG3189|consen 174 GLTFSIGGQISFDVFPKGWDKTYCLQHLEKD-G--FDTIHFFGDKTMPGGNDYEIF 226 (252)
T ss_pred CeeEEECCeEEEeecCCCcchhHHHHHhhhc-C--CceEEEeccccCCCCCcceee
Confidence 4444455566667777777766666665544 3 46788999965 565543
No 271
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=82.95 E-value=1.6 Score=38.86 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=30.9
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
++.+..+..+++|.+.+++.+.+|+..-...-..- +..|+-
T Consensus 705 kLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVa-keCgmi 745 (1140)
T KOG0208|consen 705 KLKEETKRVIDELNRANIRTVMCTGDNLLTAISVA-KECGMI 745 (1140)
T ss_pred ccccccHHHHHHHHhhcceEEEEcCCchheeeehh-hccccc
Confidence 46678889999999999999999998766544444 445543
No 272
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=82.71 E-value=3.2 Score=35.43 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=42.5
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCC-cccc-ceeecccccC
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESF-SVIVGSDEVR 145 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l-~~~~-~~~~~~~~~~ 145 (232)
.+++.|++.+||+.+.+. +.+.|+|-+.+.++...+ +.+.- ..+| |.|++.++-.
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~-~liDP~~~lF~dRIisrde~~ 255 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIA-KLIDPEGKYFGDRIISRDESP 255 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHH-HHhCCCCccccceEEEecCCC
Confidence 467899999999999988 999999999999887776 54432 2345 6677777733
No 273
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=82.60 E-value=0.99 Score=25.54 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCCCcEEEEeCchhhhhhhh
Q 026853 153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 182 (232)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~ 182 (232)
-+++.++++|+ .+++||...|+++..
T Consensus 6 DVqQLLK~fG~----~IY~gdr~~DielM~ 31 (62)
T PF06014_consen 6 DVQQLLKKFGI----IIYVGDRLWDIELME 31 (62)
T ss_dssp HHHHHHHTTS---------S-HHHHHHHHH
T ss_pred HHHHHHHHCCE----EEEeCChHHHHHHHH
Confidence 35778899997 699999999999865
No 274
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=81.86 E-value=0.87 Score=31.65 Aligned_cols=14 Identities=43% Similarity=0.764 Sum_probs=12.6
Q ss_pred cEEEEeCCCccccc
Q 026853 10 SCVILDLDGTLLNT 23 (232)
Q Consensus 10 k~i~fDlDGTL~~~ 23 (232)
+.+++|+|+||+.+
T Consensus 2 ~~lvlDLDeTLi~~ 15 (162)
T TIGR02251 2 KTLVLDLDETLVHS 15 (162)
T ss_pred cEEEEcCCCCcCCC
Confidence 57999999999977
No 275
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=81.64 E-value=8.4 Score=30.91 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=43.1
Q ss_pred ccHHhHHHHHHHHHHhhhccCCCCCcH-HHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 70 CAKHEFVNEVYSMFSDHLCKVKALPGA-NRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
.+.+++.+.+.++.++....+.+.-|+ ++.++.+++.+..+.|||-+......+.+
T Consensus 137 mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~ 193 (423)
T TIGR00190 137 MDEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWML 193 (423)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHH
Confidence 556777777777777776677777775 78889999888888999988877766665
No 276
>PRK00208 thiG thiazole synthase; Reviewed
Probab=81.51 E-value=20 Score=26.87 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCCCcHHHHHHHHHhC---CCCEEEEeCCchHHHHHHHhhhcCCccc--cceeecccccCCCCCCHHHHHHHHHhcCCCC
Q 026853 91 KALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNES--FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (232)
.+.|+..++++..+.. |+.+.-+++.+.....+. ..+|..-. ....|++. .+..+++.++.+.+..+++
T Consensus 104 ~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l--~~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~vp- 177 (250)
T PRK00208 104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRL--EEAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADVP- 177 (250)
T ss_pred CCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH--HHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCCe-
Confidence 4678888998887776 998885777766666544 34453222 11223322 3444578888887775543
Q ss_pred CcEEEEeCch---hhhhhhhhcCCEEEEeCCCCCc
Q 026853 166 SSSLVIEDSV---IGVVAGKAAGMEVVAVPSLPKQ 197 (232)
Q Consensus 166 ~~~~~vgD~~---~Di~~a~~~G~~~i~v~~~~~~ 197 (232)
+.+|=+. .|+..+-++|...++++++-..
T Consensus 178 ---VIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 178 ---VIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred ---EEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 5555443 7999999999999999996554
No 277
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=81.48 E-value=8.5 Score=31.02 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=43.3
Q ss_pred ccHHhHHHHHHHHHHhhhccCCCCCcH-HHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 70 CAKHEFVNEVYSMFSDHLCKVKALPGA-NRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
.+.+++.+.+.++..+....+.+.-|+ ++.++.+++.+..+.|||-+......+.+
T Consensus 140 mt~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~ 196 (431)
T PRK13352 140 MTEDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWML 196 (431)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHH
Confidence 556777777777777777777777774 78889998888888999988877766665
No 278
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=81.36 E-value=1 Score=33.37 Aligned_cols=11 Identities=55% Similarity=0.751 Sum_probs=7.5
Q ss_pred EEeCCCccccc
Q 026853 13 ILDLDGTLLNT 23 (232)
Q Consensus 13 ~fDlDGTL~~~ 23 (232)
+||+||||.+.
T Consensus 1 ~lDyDGTL~p~ 11 (235)
T PF02358_consen 1 FLDYDGTLAPI 11 (235)
T ss_dssp EEE-TTTSS--
T ss_pred CcccCCccCCC
Confidence 68999999965
No 279
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=80.40 E-value=7.1 Score=31.14 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=59.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHH------------HHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRAT------------IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~------------~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~ 158 (232)
.+++.+..=++.|.+.|+.++|.||..... +.... ..+++ .|........-...||...+.+...
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~-anl~v--Pi~~~~A~~~~~yRKP~tGMwe~~~ 180 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIV-ANLGV--PIQLLAAIIKGKYRKPSTGMWEFLK 180 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHH-HhcCC--ceEEeeeccCCcccCcchhHHHHHH
Confidence 456666777999999999999999874211 22222 22333 2222222223357899999998888
Q ss_pred HhcC----CCCCcEEEEeCc---------------hhhhhhhhhcCCE
Q 026853 159 KRLN----MEPSSSLVIEDS---------------VIGVVAGKAAGME 187 (232)
Q Consensus 159 ~~~~----~~~~~~~~vgD~---------------~~Di~~a~~~G~~ 187 (232)
+.++ +.-...+|+||- ..|+..|.++|+.
T Consensus 181 ~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvk 228 (422)
T KOG2134|consen 181 RLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVK 228 (422)
T ss_pred HHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCc
Confidence 7765 333345577762 2578889999864
No 280
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=79.93 E-value=5 Score=28.65 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=38.4
Q ss_pred cHHhHHHHHHHHHHhhh---ccCCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcC-----Cccccceeeccc
Q 026853 71 AKHEFVNEVYSMFSDHL---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-----WNESFSVIVGSD 142 (232)
Q Consensus 71 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~-----l~~~~~~~~~~~ 142 (232)
+.......+...++-.. .+.++.| .+|..+++.|++++++.+.......... .++. +-..||.+...+
T Consensus 82 D~~~~~~rfl~~~~P~~~i~~EtElWP---nll~~a~~~~ip~~LvNarls~~s~~~~-~~~~~~~r~~l~~f~~i~aqs 157 (186)
T PF04413_consen 82 DFPWAVRRFLDHWRPDLLIWVETELWP---NLLREAKRRGIPVVLVNARLSERSFRRY-RRFPFLFRPLLSRFDRILAQS 157 (186)
T ss_dssp SSHHHHHHHHHHH--SEEEEES----H---HHHHH-----S-EEEEEE---------------HHHHHHGGG-SEEEESS
T ss_pred cCHHHHHHHHHHhCCCEEEEEccccCH---HHHHHHhhcCCCEEEEeeeeccccchhh-hhhHHHHHHHHHhCCEEEECC
Confidence 33444455555554321 2444555 6888999999999999988655432222 2111 224567665443
Q ss_pred ccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhh
Q 026853 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (232)
Q Consensus 143 ~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di 178 (232)
+ .-.+-+.++|++++++...|+---|.
T Consensus 158 ~---------~da~r~~~lG~~~~~v~v~GnlKfd~ 184 (186)
T PF04413_consen 158 E---------ADAERFRKLGAPPERVHVTGNLKFDQ 184 (186)
T ss_dssp H---------HHHHHHHTTT-S--SEEE---GGG--
T ss_pred H---------HHHHHHHHcCCCcceEEEeCcchhcc
Confidence 3 44566788999999999999977665
No 281
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=78.54 E-value=3.5 Score=29.64 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=30.3
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhh
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ 128 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~ 128 (232)
+.+.+.+.|++|++.|.+++++|++....+...+ +.
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~-~~ 53 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELL-KQ 53 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-Hh
Confidence 3466778999999999999999999999888777 44
No 282
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=78.36 E-value=4.3 Score=30.15 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCCC--cEEEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 151 PDIFLEAAKRLNMEPS--SSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 151 ~~~~~~~~~~~~~~~~--~~~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
.+.|...++.+|+++. ++-||.|+. |--.+|...|+.+..-.+
T Consensus 88 QelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVWldGM 133 (279)
T cd00733 88 QELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWLDGM 133 (279)
T ss_pred HHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEECCe
Confidence 4678889999999774 699999999 899999999988443333
No 283
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=78.16 E-value=1.6 Score=30.11 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=14.0
Q ss_pred cccEEEEeCCCcccccH
Q 026853 8 LMSCVILDLDGTLLNTD 24 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~ 24 (232)
+-..+++|+|.||+++.
T Consensus 5 ~kl~LVLDLDeTLihs~ 21 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTT 21 (156)
T ss_pred CceEEEEeCCCCccccc
Confidence 34678999999999873
No 284
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=77.53 E-value=1.6 Score=35.15 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=14.7
Q ss_pred cccEEEEeCCCcccccH
Q 026853 8 LMSCVILDLDGTLLNTD 24 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~ 24 (232)
..+.|++|+||||..++
T Consensus 374 n~kiVVsDiDGTITkSD 390 (580)
T COG5083 374 NKKIVVSDIDGTITKSD 390 (580)
T ss_pred CCcEEEEecCCcEEehh
Confidence 56899999999999764
No 285
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=77.40 E-value=4.8 Score=30.01 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCCCC--cEEEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 151 PDIFLEAAKRLNMEPS--SSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 151 ~~~~~~~~~~~~~~~~--~~~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
.+.|..-++.+|++|. ++-||.|+. |--.+|...|+.+ |.++
T Consensus 92 QelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEV-WldG 136 (283)
T PRK09348 92 QELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEV-WLDG 136 (283)
T ss_pred HHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEE-EECC
Confidence 4678889999999874 699999999 8999999999884 4443
No 286
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=76.72 E-value=28 Score=25.83 Aligned_cols=98 Identities=10% Similarity=0.159 Sum_probs=69.0
Q ss_pred CCCCCcHHHHHH---HHHhCCCCEEEEeCCchHHHHHHHhhhcCCcccc--ceeecccccCCCCCCHHHHHHHHHhcCCC
Q 026853 90 VKALPGANRLIK---HLSCHGVPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (232)
Q Consensus 90 ~~~~~~~~~~l~---~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (232)
..+.|+..++++ .|-+.|+.+.-+++.+.-..+ .| +..|..... ..-| ..+.+--++..++.++++.+++
T Consensus 110 ~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~ar-rL-ee~GcaavMPl~aPI---GSg~G~~n~~~l~iiie~a~VP 184 (262)
T COG2022 110 KTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLAR-RL-EEAGCAAVMPLGAPI---GSGLGLQNPYNLEIIIEEADVP 184 (262)
T ss_pred cccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHH-HH-HhcCceEeccccccc---cCCcCcCCHHHHHHHHHhCCCC
Confidence 357788877775 466789999999998887665 44 444543211 1112 1234566789999999999886
Q ss_pred CCcEEEEeCch---hhhhhhhhcCCEEEEeCCCCC
Q 026853 165 PSSSLVIEDSV---IGVVAGKAAGMEVVAVPSLPK 196 (232)
Q Consensus 165 ~~~~~~vgD~~---~Di~~a~~~G~~~i~v~~~~~ 196 (232)
+.|+-+. +|...+-+.|...+++|+.-.
T Consensus 185 ----viVDAGiG~pSdAa~aMElG~DaVL~NTAiA 215 (262)
T COG2022 185 ----VIVDAGIGTPSDAAQAMELGADAVLLNTAIA 215 (262)
T ss_pred ----EEEeCCCCChhHHHHHHhcccceeehhhHhh
Confidence 5665554 899999999999999998433
No 287
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=76.24 E-value=5.4 Score=29.89 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCCCC--cEEEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 151 PDIFLEAAKRLNMEPS--SSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 151 ~~~~~~~~~~~~~~~~--~~~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
.+.|..-++.+|++|. ++-||.|+. |--.+|...||.+ |.++
T Consensus 89 QelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEV-WldG 133 (293)
T TIGR00388 89 QELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEV-WLDG 133 (293)
T ss_pred HHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEE-EECC
Confidence 4678889999999874 699999999 8999999999884 4443
No 288
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=76.01 E-value=4.5 Score=29.54 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeec
Q 026853 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG 140 (232)
Q Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~ 140 (232)
+.++|..|++. +.+++||++....+..-+ ....+...||.+++
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl-~~~~~~~~fdy~f~ 43 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQL-GGDDVLDNFDYVFP 43 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHH-STTTHHHH-SEEEE
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHH-cccchHhhCCeeec
Confidence 46889999986 999999999988776555 21124445676654
No 289
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=75.15 E-value=17 Score=28.04 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=22.1
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHH
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATI 121 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~ 121 (232)
+|+..+-+.|+..|..+.++|+.....+
T Consensus 63 ~GA~aLa~aL~~lG~~~~ivtd~~~~~~ 90 (291)
T PF14336_consen 63 PGAAALARALQALGKEVVIVTDERCAPV 90 (291)
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHHHH
Confidence 5788888888889999999998754443
No 290
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=74.64 E-value=23 Score=27.65 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=55.4
Q ss_pred ccCCCCCcHHHHHHHHHhC----CCCEEEEeCCchHHH---HHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHh
Q 026853 88 CKVKALPGANRLIKHLSCH----GVPMALASNSHRATI---ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (232)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~----g~~~~i~s~~~~~~~---~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~ 160 (232)
....+.+++.+.++.|.+. .++.+++||+.-... ...+...+|+.-.-|.++-+ .. .|+... +
T Consensus 48 RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqS-----Hs----P~r~l~-~ 117 (389)
T KOG1618|consen 48 RGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQS-----HS----PFRLLV-E 117 (389)
T ss_pred ecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhh-----cC----hHHHHh-h
Confidence 4567899999999999987 799999999843221 12232444543333333322 11 233333 2
Q ss_pred cCCCCCcEEEEeCchhhhhhhhhcCCEEEE
Q 026853 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (232)
Q Consensus 161 ~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~ 190 (232)
..-++++++|++ +--+.|+..|++-+.
T Consensus 118 --~~~k~vLv~G~~-~vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 118 --YHYKRVLVVGQG-SVREVAEGYGFKNVV 144 (389)
T ss_pred --hhhceEEEecCC-cHHHHhhccCcccee
Confidence 335779999955 445667888887554
No 291
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=74.56 E-value=6.3 Score=29.92 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=31.6
Q ss_pred CCCCcHHHHHHHHHh-CCCCEEEEeCCchHHHHHHHhhhcC
Q 026853 91 KALPGANRLIKHLSC-HGVPMALASNSHRATIESKISYQHG 130 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~-~g~~~~i~s~~~~~~~~~~l~~~~~ 130 (232)
.+.+...+.|+.|++ .|+.++|+|+.+...+...+ +.++
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~-~~~~ 75 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRSMVELDALA-KPYR 75 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhc-Cccc
Confidence 455788889999998 68999999999999887766 4444
No 292
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=74.18 E-value=6.9 Score=29.27 Aligned_cols=38 Identities=8% Similarity=-0.014 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
|.+.+++++++++|+.++++|+.+...+...+ +.+++.
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~-~~~~~~ 61 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQ-KQKPLL 61 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHH-hcCCCC
Confidence 34457788888888899999999988888776 555653
No 293
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=73.96 E-value=17 Score=26.99 Aligned_cols=81 Identities=15% Similarity=0.311 Sum_probs=52.1
Q ss_pred CCCEEEEeCCc---hHHHHHHHhhhc-CCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCch--hhhhh
Q 026853 107 GVPMALASNSH---RATIESKISYQH-GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV--IGVVA 180 (232)
Q Consensus 107 g~~~~i~s~~~---~~~~~~~l~~~~-~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~--~Di~~ 180 (232)
++.+.+++.+. .+.+++...+.+ .|.+-|-.+++.. ...|-|..-++++...+++ ++.|||.+ -+-..
T Consensus 30 dI~vrv~gsGaKm~pe~~e~~~~~~~~~~~pdf~I~isPN---~~~PGP~~ARE~l~~~~iP---~IvI~D~p~~k~kd~ 103 (276)
T PF01993_consen 30 DIDVRVVGSGAKMGPEDVEEVVTKMLKEWDPDFVIVISPN---AAAPGPTKAREMLSAKGIP---CIVISDAPTKKAKDA 103 (276)
T ss_dssp SEEEEEEEEET--SHHHHHHHHHHHHHHH--SEEEEE-S----TTSHHHHHHHHHHHHSSS----EEEEEEGGGGGGHHH
T ss_pred CceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCC---CCCCCcHHHHHHHHhCCCC---EEEEcCCCchhhHHH
Confidence 56777777663 333333332222 4555444444432 3567788889999988987 89999999 36788
Q ss_pred hhhcCCEEEEeCC
Q 026853 181 GKAAGMEVVAVPS 193 (232)
Q Consensus 181 a~~~G~~~i~v~~ 193 (232)
.++.|+..|.+..
T Consensus 104 l~~~g~GYIivk~ 116 (276)
T PF01993_consen 104 LEEEGFGYIIVKA 116 (276)
T ss_dssp HHHTT-EEEEETT
T ss_pred HHhcCCcEEEEec
Confidence 8999999888876
No 294
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=73.93 E-value=42 Score=26.93 Aligned_cols=58 Identities=9% Similarity=0.044 Sum_probs=43.6
Q ss_pred CCccHHhHHHHHHHHHHhhhccCCCCCcH-HHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 68 LPCAKHEFVNEVYSMFSDHLCKVKALPGA-NRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
.+.+.+.+...+.++.++......+.-|+ ++.+..+++.|..+.|||-+..-.....+
T Consensus 136 ~~~t~d~~~~~v~~qa~~GVdfmTIHaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml 194 (432)
T COG0422 136 EDLTEDDFFDTVEKQAEQGVDFMTIHAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWML 194 (432)
T ss_pred hhCCHHHHHHHHHHHHHhCCcEEEeehhhhHHHHHHHHhcCceeeeeccchHHHHHHHH
Confidence 34556667777777777766666777776 67788888888889999999877766666
No 295
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=73.59 E-value=2.3 Score=30.09 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.4
Q ss_pred ccEEEEeCCCccccc
Q 026853 9 MSCVILDLDGTLLNT 23 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~ 23 (232)
.+++++|-||||...
T Consensus 5 ~k~lflDRDGtin~d 19 (181)
T COG0241 5 QKALFLDRDGTINID 19 (181)
T ss_pred CcEEEEcCCCceecC
Confidence 689999999999855
No 296
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=73.38 E-value=2 Score=34.02 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.6
Q ss_pred cccEEEEeCCCcccccH
Q 026853 8 LMSCVILDLDGTLLNTD 24 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~ 24 (232)
..|.+.||+||||+++.
T Consensus 74 ~~K~i~FD~dgtlI~t~ 90 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTK 90 (422)
T ss_pred CcceEEEecCCceeecC
Confidence 45889999999999873
No 297
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=72.09 E-value=28 Score=29.51 Aligned_cols=88 Identities=8% Similarity=0.082 Sum_probs=50.1
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCc
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~ 174 (232)
++...|..++..+-++++++-......-..+.+.+++.-..-.+...++ ......-++.-|+. ++|||.
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e-------~~~~~~~l~~~G~~----~viG~~ 153 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEED-------ARSCVNDLRARGIG----AVVGAG 153 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHH-------HHHHHHHHHHCCCC----EEECCh
Confidence 4555666666666788888766443333334344454321111111111 11222233344664 889999
Q ss_pred hhhhhhhhhcCCEEEEeCCC
Q 026853 175 VIGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 175 ~~Di~~a~~~G~~~i~v~~~ 194 (232)
.. ...|+++|+..+.+.++
T Consensus 154 ~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 154 LI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HH-HHHHHHcCCceEEEecH
Confidence 65 68899999999999874
No 298
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=71.97 E-value=6.4 Score=27.74 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHh---cCCCCCcEEEEe
Q 026853 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR---LNMEPSSSLVIE 172 (232)
Q Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~---~~~~~~~~~~vg 172 (232)
+.+.|..++..+-++++++....-.-...+.+.+|+.- ...... ++.-++..+++ -|++ ++||
T Consensus 66 il~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i--~~~~~~--------~~~e~~~~i~~~~~~G~~----viVG 131 (176)
T PF06506_consen 66 ILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDI--KIYPYD--------SEEEIEAAIKQAKAEGVD----VIVG 131 (176)
T ss_dssp HHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EE--EEEEES--------SHHHHHHHHHHHHHTT------EEEE
T ss_pred HHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCce--EEEEEC--------CHHHHHHHHHHHHHcCCc----EEEC
Confidence 34444444445667888876643331222324455521 111111 12333444433 3554 8999
Q ss_pred CchhhhhhhhhcCCEEEEeCCC
Q 026853 173 DSVIGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 173 D~~~Di~~a~~~G~~~i~v~~~ 194 (232)
++.. ...|++.|++++.+.++
T Consensus 132 g~~~-~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 132 GGVV-CRLARKLGLPGVLIESG 152 (176)
T ss_dssp SHHH-HHHHHHTTSEEEESS--
T ss_pred CHHH-HHHHHHcCCcEEEEEec
Confidence 9975 78899999999999773
No 299
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.56 E-value=5 Score=22.81 Aligned_cols=26 Identities=4% Similarity=0.052 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCCCCcEEEEeCchhhhhhhh
Q 026853 153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 182 (232)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~ 182 (232)
-+++.++.+|+ +++|||...||++.+
T Consensus 6 DVqQlLK~~G~----ivyfg~r~~~iemm~ 31 (68)
T COG4483 6 DVQQLLKKFGI----IVYFGKRLYDIEMMQ 31 (68)
T ss_pred HHHHHHHHCCe----eeecCCHHHHHHHHH
Confidence 35778889887 699999999999876
No 300
>PTZ00174 phosphomannomutase; Provisional
Probab=70.96 E-value=8.2 Score=28.89 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=27.8
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
+.+...+.|++++++|+.+++.|+++...+...+
T Consensus 23 is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l 56 (247)
T PTZ00174 23 ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQL 56 (247)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 3445678899999999999999999888776555
No 301
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=69.70 E-value=1.8 Score=31.50 Aligned_cols=49 Identities=10% Similarity=-0.128 Sum_probs=32.5
Q ss_pred cccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCch----hhhhhhhhcCCEEEEeCC
Q 026853 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV----IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~----~Di~~a~~~G~~~i~v~~ 193 (232)
+....+..+.-.++++.+.. .+++.||||.. ||.+.....+..++.|.+
T Consensus 155 Dvfp~GwDKty~Lr~l~~~~---~~~I~FfGDkt~pGGNDyei~~~~rt~g~~V~~ 207 (220)
T PF03332_consen 155 DVFPKGWDKTYCLRHLEDEG---FDEIHFFGDKTFPGGNDYEIFEDPRTIGHTVTS 207 (220)
T ss_dssp EEEETT-SGGGGGGGTTTTT----SEEEEEESS-STTSTTHHHHHSTTSEEEE-SS
T ss_pred ccccCCccHHHHHHHHHhcc---cceEEEEehhccCCCCCceeeecCCccEEEeCC
Confidence 44455555555555543322 68999999976 899999988888888877
No 302
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=68.81 E-value=28 Score=26.79 Aligned_cols=15 Identities=47% Similarity=0.709 Sum_probs=13.1
Q ss_pred ccEEEEeCCCccccc
Q 026853 9 MSCVILDLDGTLLNT 23 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~ 23 (232)
.++++||+||||.+.
T Consensus 158 ~~~~~~D~dgtl~~~ 172 (300)
T PHA02530 158 PKAVIFDIDGTLAKM 172 (300)
T ss_pred CCEEEEECCCcCcCC
Confidence 478999999999974
No 303
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=68.47 E-value=13 Score=32.09 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=61.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccce---eecc--ccc--------------CCCCCCH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV---IVGS--DEV--------------RTGKPSP 151 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~---~~~~--~~~--------------~~~kp~~ 151 (232)
+|..+..+.+++....|..+-.+|+.........- .++|....+-. ..+. ++. +..--.|
T Consensus 492 pprhdsa~tirral~lGv~VkmitgdqlaI~keTg-rrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfp 570 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETG-RRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFP 570 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecchHHHHHHhhh-hhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCH
Confidence 35677888899988999999999998776655444 55554332110 1110 000 0111123
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCE
Q 026853 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 187 (232)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~ 187 (232)
+--.++.+.++-...-|-+.||+.||-.+.+.+...
T Consensus 571 ehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdig 606 (942)
T KOG0205|consen 571 EHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIG 606 (942)
T ss_pred HHHHHHHHHHhhcCceecccCCCcccchhhcccccc
Confidence 333456666776667789999999999999999854
No 304
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=67.87 E-value=11 Score=29.66 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=26.7
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCchH
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHRA 119 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~ 119 (232)
+..++|.+.++++.+++.|+.+.+.||+...
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 3446788999999999999999999999764
No 305
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.53 E-value=3.5 Score=33.86 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=13.8
Q ss_pred cccEEEEeCCCccccc
Q 026853 8 LMSCVILDLDGTLLNT 23 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~ 23 (232)
.-|++++|+|+||+.+
T Consensus 221 ~kK~LVLDLDNTLWGG 236 (574)
T COG3882 221 SKKALVLDLDNTLWGG 236 (574)
T ss_pred ccceEEEecCCccccc
Confidence 4689999999999954
No 306
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=67.20 E-value=37 Score=28.88 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=50.4
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCc
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~ 174 (232)
++.+.|..++..+-++++++-......-..+.+.+++.-..-.+...++ ......-++..|+. ++|||+
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e-------~~~~v~~lk~~G~~----~vvG~~ 163 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEED-------ARGQINELKANGIE----AVVGAG 163 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHH-------HHHHHHHHHHCCCC----EEEcCc
Confidence 4555666666666788888866443333334344454221111111111 12222333445664 889998
Q ss_pred hhhhhhhhhcCCEEEEeCCC
Q 026853 175 VIGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 175 ~~Di~~a~~~G~~~i~v~~~ 194 (232)
.. ...|+++|+..+++.++
T Consensus 164 ~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 164 LI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred hH-HHHHHHhCCceEEecCH
Confidence 76 78999999999999763
No 307
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=67.18 E-value=35 Score=22.86 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=47.7
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHH-HHHHh---hhcCCccccceee-ccccc-----CCCCCCHHHHHHHHHhcCC
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATI-ESKIS---YQHGWNESFSVIV-GSDEV-----RTGKPSPDIFLEAAKRLNM 163 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~-~~~l~---~~~~l~~~~~~~~-~~~~~-----~~~kp~~~~~~~~~~~~~~ 163 (232)
..+.+.+.....+|-++.++-++..... .+... ...+........+ ..... ...-..+...+.+++.+++
T Consensus 22 ~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 3445566666667778888877754332 22221 2223333333222 22211 0011123445677778888
Q ss_pred CCCcEEEE----eCchhhh---hhhhhcCCEEEEeC
Q 026853 164 EPSSSLVI----EDSVIGV---VAGKAAGMEVVAVP 192 (232)
Q Consensus 164 ~~~~~~~v----gD~~~Di---~~a~~~G~~~i~v~ 192 (232)
.|.+++++ |.+++=+ ..|++.|+.+|.+.
T Consensus 102 ~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 99998865 4445544 44778899988874
No 308
>PLN02887 hydrolase family protein
Probab=66.77 E-value=10 Score=32.41 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=34.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
.+.+...+.|++++++|+.+++.|+.....+...+ +.+++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l-~~L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDIL-KMVDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHhCcc
Confidence 35567789999999999999999999999888777 766654
No 309
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=66.46 E-value=8.9 Score=30.56 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=29.4
Q ss_pred HHHHHHHHhc----CCCCCcEEEEeCch-----hhhhhhhhcCCEEEEeCC
Q 026853 152 DIFLEAAKRL----NMEPSSSLVIEDSV-----IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 152 ~~~~~~~~~~----~~~~~~~~~vgD~~-----~Di~~a~~~G~~~i~v~~ 193 (232)
.++..+.+.+ ++.++++++|||-. ||.. |+.+| .++||++
T Consensus 352 ~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~s~GaNDfk-aR~a~-~t~WIas 400 (408)
T PF06437_consen 352 LGVRALQKYFDPEGGIKPSETLHVGDQFLSAGANDFK-ARLAC-TTAWIAS 400 (408)
T ss_pred HhHHHHHHHHHhccCCCccceeeehhhhhccCCcchh-hhhhc-eeeEecC
Confidence 4555555666 89999999999954 5554 45555 6799987
No 310
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=65.08 E-value=8.9 Score=20.09 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 97 NRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
.++.+.|.+.|++.+-+|.+++....+.|
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL 37 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKL 37 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHH
Confidence 46788899999999999999998888777
No 311
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=64.93 E-value=12 Score=27.80 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCC--cEEEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 152 DIFLEAAKRLNMEPS--SSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 152 ~~~~~~~~~~~~~~~--~~~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
+.|...++.+|++|. ++=||.|+. |--.+|...|+. +|.++
T Consensus 94 eLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWE-VWldG 137 (298)
T COG0752 94 ELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWE-VWLDG 137 (298)
T ss_pred HHHHHHHHHcCCChhhcceeeeccCCCCCccccccccee-EEEcC
Confidence 677888999999884 688999999 888899999988 45543
No 312
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=63.91 E-value=15 Score=32.07 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCcc
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~ 133 (232)
.+...+.|++++++|+++++.|+.+...+.... +.+++..
T Consensus 435 ~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~-~~Lgl~~ 474 (694)
T PRK14502 435 YSTALDALRLLKDKELPLVFCSAKTMGEQDLYR-NELGIKD 474 (694)
T ss_pred CHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCCCC
Confidence 345688899999999999999999999887777 7777643
No 313
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=63.44 E-value=6.4 Score=29.49 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCC--CcEEEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 151 PDIFLEAAKRLNMEP--SSSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 151 ~~~~~~~~~~~~~~~--~~~~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
.+.|...++.+|+++ +++-||.|+. |-..+|...|+. ||.++
T Consensus 87 q~lYL~SL~~lGId~~~hDIRFVEDnWEsPtLGAwGlGWE-VWldG 131 (284)
T PF02091_consen 87 QELYLESLEALGIDPKEHDIRFVEDNWESPTLGAWGLGWE-VWLDG 131 (284)
T ss_dssp HHHHHHHHHHCT--CCCS-EEEEEE-EEETTTTEEEEEEE-EEETT
T ss_pred HHHHHHHHHHhCCCccccceeEeecCCCCCcccccccccE-EEECC
Confidence 468889999999877 4799999999 899999999988 44443
No 314
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=62.88 E-value=53 Score=23.43 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=45.1
Q ss_pred HHHHHHHHHhC--CCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeC
Q 026853 96 ANRLIKHLSCH--GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (232)
Q Consensus 96 ~~~~l~~l~~~--g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD 173 (232)
+..++++|+++ ++++.+-|.+...... .. +.+ .+.....+ ..-..+...+..+++++ |+-++.++.
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~tg~~~-~~-~~~--~~~v~~~~------~P~D~~~~~~rfl~~~~--P~~~i~~Et 104 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTPTGREM-AR-KLL--PDRVDVQY------LPLDFPWAVRRFLDHWR--PDLLIWVET 104 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-CCHHHH-HH-GG---GGG-SEEE---------SSHHHHHHHHHHH----SEEEEES-
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCchHHH-HH-HhC--CCCeEEEE------eCccCHHHHHHHHHHhC--CCEEEEEcc
Confidence 46778888876 6777777765444321 11 222 22222222 22334678888888866 788888888
Q ss_pred ch--hhhhhhhhcCCEEEEeCCC
Q 026853 174 SV--IGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 174 ~~--~Di~~a~~~G~~~i~v~~~ 194 (232)
.. |=+..++..|++.++++..
T Consensus 105 ElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 105 ELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp ---HHHHHH-----S-EEEEEE-
T ss_pred ccCHHHHHHHhhcCCCEEEEeee
Confidence 87 7889999999999999973
No 315
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=62.72 E-value=55 Score=25.95 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=53.8
Q ss_pred HHHHHHHHHhC-CCC-EEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHH---HHHHHHhcCCCCCcEEE
Q 026853 96 ANRLIKHLSCH-GVP-MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI---FLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 96 ~~~~l~~l~~~-g~~-~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~---~~~~~~~~~~~~~~~~~ 170 (232)
+..+++.|++. ++. ..++|+.........+ +.+++...++..+.+......+..... +..++++. .|+=++.
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pDiv~~ 92 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVL-DLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEE--KPDIVLV 92 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHH-HhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHc--CCCEEEE
Confidence 45677788765 333 5677777766666566 557876444333322111111111222 33333443 3666778
Q ss_pred EeCchh---hhhhhhhcCCEEEEeCCC
Q 026853 171 IEDSVI---GVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 171 vgD~~~---Di~~a~~~G~~~i~v~~~ 194 (232)
.||... -..+|+..|++.+.+..|
T Consensus 93 ~gd~~~~la~a~aa~~~~ipv~h~~~g 119 (365)
T TIGR00236 93 QGDTTTTLAGALAAFYLQIPVGHVEAG 119 (365)
T ss_pred eCCchHHHHHHHHHHHhCCCEEEEeCC
Confidence 888764 345677789998877554
No 316
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=62.25 E-value=23 Score=28.75 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeCchhhhh----hhhhcCCEEEEeCCC
Q 026853 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVV----AGKAAGMEVVAVPSL 194 (232)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~vgD~~~Di~----~a~~~G~~~i~v~~~ 194 (232)
.+-+..+.+++|--.+-+++|||++.|+- ++-.+|+.++.+-.|
T Consensus 208 ~~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGg 255 (505)
T PF10113_consen 208 MEEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGG 255 (505)
T ss_pred HHHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCC
Confidence 44567788899988899999999997764 556677787777663
No 317
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=60.29 E-value=5.5 Score=30.09 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=60.9
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCC-ccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcE
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l-~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (232)
+...|++.++|....+. +.+++.|.+........+ ..+.= ...+...+..+.+.... ..|.+-+..++-+.+++
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~-D~LD~~~~i~~~RlyR~~C~~~~---g~yvKdls~~~~dL~~v 204 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLL-DILDPDRKIISHRLYRDSCTLKD---GNYVKDLSVLGRDLSKV 204 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHH-HHccCCCCeeeeeecccceEeEC---CcEEEEcceeccCcccE
Confidence 46788999999998877 788899999888887777 65542 22333222222111000 01111124566688899
Q ss_pred EEEeCchhhhhhhhhcCCEEE
Q 026853 169 LVIEDSVIGVVAGKAAGMEVV 189 (232)
Q Consensus 169 ~~vgD~~~Di~~a~~~G~~~i 189 (232)
+.|+|++.-..+--+-|++.-
T Consensus 205 iIiDNsP~sy~~~p~NgIpI~ 225 (262)
T KOG1605|consen 205 IIVDNSPQSYRLQPENGIPIK 225 (262)
T ss_pred EEEcCChHHhccCccCCCccc
Confidence 999999988888888886543
No 318
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=59.77 E-value=24 Score=26.11 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=24.2
Q ss_pred HHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
.++ ++++|+.++++|+++...+...+ +.+++.
T Consensus 23 ~~~-~~~~gi~~viaTGR~~~~v~~~~-~~l~l~ 54 (236)
T TIGR02471 23 LLR-GSGDAVGFGIATGRSVESAKSRY-AKLNLP 54 (236)
T ss_pred HHH-hcCCCceEEEEeCCCHHHHHHHH-HhCCCC
Confidence 344 46778889999999888888887 666664
No 319
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=59.40 E-value=81 Score=24.37 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcC-CccccceeecccccC-CCCC---CHHHHHHHHHhcCCCCCcEEE
Q 026853 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-WNESFSVIVGSDEVR-TGKP---SPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~-l~~~~~~~~~~~~~~-~~kp---~~~~~~~~~~~~~~~~~~~~~ 170 (232)
++++|...++.|+-+..+.-...+.++..+ +... ... ..++...... ..-+ -......++++..++. ++.
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi-~AAee~~s--PvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPV--alH 78 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVV-ETAAEMRS--PVILAGTPGTFKHAGTEYIVALCSAASTTYNMPL--ALH 78 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHH-HHHHHhCC--CEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCE--EEE
Confidence 567888888888888888888777777666 3222 111 1111111100 0011 1234455666666642 344
Q ss_pred EeC--chhhhhhhhhcCCEEEEeCCCC
Q 026853 171 IED--SVIGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 171 vgD--~~~Di~~a~~~G~~~i~v~~~~ 195 (232)
.+- +..++..|-.+|+.+|++....
T Consensus 79 LDHg~~~e~i~~ai~~GFtSVM~DgS~ 105 (282)
T TIGR01858 79 LDHHESLDDIRQKVHAGVRSAMIDGSH 105 (282)
T ss_pred CCCCCCHHHHHHHHHcCCCEEeecCCC
Confidence 443 3468888999999999998743
No 320
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=58.24 E-value=29 Score=20.38 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcC
Q 026853 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G 185 (232)
..|-...++.+++++++++.....+-+.--.|..++.+|
T Consensus 25 ~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAG 63 (82)
T cd01766 25 STPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAG 63 (82)
T ss_pred cCchHHHHHHHHHhcCCCccceeEEecCccccChhhccc
Confidence 446678899999999999998888888778889999988
No 321
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=57.56 E-value=33 Score=26.11 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCC------------
Q 026853 97 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME------------ 164 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~------------ 164 (232)
.++.+.+.+.|+.+..+.....-.-.-+. ...++-..-..+++.--...++.....++..++.+|++
T Consensus 41 ~~lve~l~~~gv~V~ll~~~~~~Pd~VFt-~D~~~v~~~~avl~r~~~p~R~gE~~~~~~~~~~lgi~i~~~~~~~~~eG 119 (267)
T COG1834 41 EALVEALEKNGVEVHLLPPIEGLPDQVFT-RDPGLVTGEGAVLARMGAPERRGEEEAIKETLESLGIPIYPRVEAGVFEG 119 (267)
T ss_pred HHHHHHHHHCCCEEEEcCcccCCCcceEe-ccceeEecccEEEeccCChhhccCHHHHHHHHHHcCCcccccccCCCccc
Confidence 35566667777777776622110000000 11111111112222222334555667788888888864
Q ss_pred -------CCcEEEEeCch-hhhhhhhh
Q 026853 165 -------PSSSLVIEDSV-IGVVAGKA 183 (232)
Q Consensus 165 -------~~~~~~vgD~~-~Di~~a~~ 183 (232)
..+++++|.|. +|.++++.
T Consensus 120 ~GD~l~~~~~~v~iG~s~RTn~egi~~ 146 (267)
T COG1834 120 AGDVLMDGGDTVYIGYSFRTNLEGIEQ 146 (267)
T ss_pred cccEEEeCCcEEEEEeccccchHHHHH
Confidence 15567777777 67776655
No 322
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=57.10 E-value=12 Score=22.57 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=14.6
Q ss_pred cEEEEeCCCcccccHHHH
Q 026853 10 SCVILDLDGTLLNTDGMF 27 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~ 27 (232)
-.++++-|||.++++..+
T Consensus 40 ~~lvLeeDGT~Vd~EeyF 57 (81)
T cd06537 40 LTLVLEEDGTAVDSEDFF 57 (81)
T ss_pred eEEEEecCCCEEccHHHH
Confidence 568999999999886543
No 323
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=56.10 E-value=62 Score=25.90 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=53.8
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
.-.||+.-+|..+. ..+.++++|....-.+...+ +.+.-..++..-...+......+.. .+-+..+|-+++.+++
T Consensus 214 ~kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~-d~lDP~g~IsYkLfr~~t~y~~G~H---vKdls~LNRdl~kViv 288 (393)
T KOG2832|consen 214 KKRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLL-DALDPKGYISYKLFRGATKYEEGHH---VKDLSKLNRDLQKVIV 288 (393)
T ss_pred ccCchHHHHHHhhc-ccceEEEEecCCccchhhhH-hhcCCcceEEEEEecCcccccCccc---hhhhhhhccccceeEE
Confidence 35689999999988 45999999999877766666 6555444454433333322222111 2226678999999999
Q ss_pred EeCchhh
Q 026853 171 IEDSVIG 177 (232)
Q Consensus 171 vgD~~~D 177 (232)
|+=..|-
T Consensus 289 Vd~d~~~ 295 (393)
T KOG2832|consen 289 VDFDANS 295 (393)
T ss_pred EEccccc
Confidence 9877653
No 324
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=55.83 E-value=31 Score=20.25 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=24.0
Q ss_pred cEEEEeCCCcccccHHHHHHHHHHHHHHcC
Q 026853 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYG 39 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~ 39 (232)
+.|.+|++|+-.=+.....+++..++.+++
T Consensus 18 ~~V~lDF~gv~~~~ssFl~eafg~l~~~~~ 47 (74)
T PF14213_consen 18 EKVVLDFEGVESITSSFLNEAFGQLVREFG 47 (74)
T ss_pred CeEEEECCCcccccHHHHHHHHHHHHHHcC
Confidence 448999999966667777888888888777
No 325
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=55.58 E-value=13 Score=22.03 Aligned_cols=19 Identities=26% Similarity=0.600 Sum_probs=14.6
Q ss_pred ccEEEEeCCCcccccHHHH
Q 026853 9 MSCVILDLDGTLLNTDGMF 27 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~~~ 27 (232)
.-.++++-|||.++++..+
T Consensus 38 ~~~l~L~eDGT~VddEeyF 56 (74)
T smart00266 38 PVTLVLEEDGTIVDDEEYF 56 (74)
T ss_pred CcEEEEecCCcEEccHHHH
Confidence 3468899999999885543
No 326
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=55.52 E-value=13 Score=22.22 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=14.8
Q ss_pred ccEEEEeCCCcccccHHHH
Q 026853 9 MSCVILDLDGTLLNTDGMF 27 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~~~ 27 (232)
.-.++++-|||.++++..+
T Consensus 40 ~~~lvL~eDGT~Vd~EeyF 58 (78)
T cd06539 40 LVTLVLEEDGTVVDTEEFF 58 (78)
T ss_pred CcEEEEeCCCCEEccHHHH
Confidence 3568899999999886543
No 327
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=54.86 E-value=62 Score=25.44 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=40.6
Q ss_pred cceeecccccCCCCCCHH---HHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 135 FSVIVGSDEVRTGKPSPD---IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 135 ~~~~~~~~~~~~~kp~~~---~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
.+..+.+++.....|+.. +-++.|..|=+.+.++=-|..+..-+.+++.+||.+. |+.
T Consensus 313 ~~iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvm-vSH 373 (433)
T KOG2670|consen 313 VGIQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVM-VSH 373 (433)
T ss_pred cceEEecCcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEE-Eec
Confidence 355567788777776632 2234455555777888788888899999999998854 555
No 328
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=54.52 E-value=28 Score=23.78 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRAT 120 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~ 120 (232)
..+.+.++++.+++.|+++.+.||...+.
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~ 101 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPKD 101 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHH
Confidence 33568899999999999999999976543
No 329
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=52.26 E-value=16 Score=21.20 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCCCcEEEEeCc
Q 026853 153 IFLEAAKRLNMEPSSSLVIEDS 174 (232)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~vgD~ 174 (232)
.+..++++.|+...+++.|||-
T Consensus 44 Gv~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 44 GVEKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp THHHHHHTTT--TT-EEEETTE
T ss_pred CHHHHHHHcCCCCCCEEEEcCE
Confidence 3567788889999999999984
No 330
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=51.36 E-value=41 Score=23.86 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=25.7
Q ss_pred CCCCCcHHHHHHHHHhCCCCEEEEeCCchHH
Q 026853 90 VKALPGANRLIKHLSCHGVPMALASNSHRAT 120 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~ 120 (232)
..+.+.+.++++.+++.|+.+.+.||+....
T Consensus 73 Pll~~~l~~li~~~~~~g~~v~i~TNg~~~~ 103 (191)
T TIGR02495 73 PTLQAGLPDFLRKVRELGFEVKLDTNGSNPR 103 (191)
T ss_pred ccCcHhHHHHHHHHHHCCCeEEEEeCCCCHH
Confidence 4456778899999999999999999997543
No 331
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=51.04 E-value=70 Score=23.58 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=59.5
Q ss_pred CCCCcHH-HHHHHHHhCCCCEEEEeCCchH-----HHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCC
Q 026853 91 KALPGAN-RLIKHLSCHGVPMALASNSHRA-----TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (232)
Q Consensus 91 ~~~~~~~-~~l~~l~~~g~~~~i~s~~~~~-----~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (232)
.+.|++. ++.+.+++.|.+.+|+...... .+...+ +.+|+.-.+...+|+-+- ..-..+.+.++.+|-+
T Consensus 59 ~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~-e~~gi~~~~P~~~CsL~~----~~~p~i~~F~~~fGkP 133 (217)
T PF02593_consen 59 GLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQL-EEFGIEVEFPKPFCSLEE----NGNPQIDEFAEYFGKP 133 (217)
T ss_pred ccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHH-HhcCceeecCccccccCC----CCChhHHHHHHHhCCc
Confidence 4677775 6677777789999999887666 677777 777776667766665332 2234667777778875
Q ss_pred CCcEEEEeCchhhhhhhhhcCCE
Q 026853 165 PSSSLVIEDSVIGVVAGKAAGME 187 (232)
Q Consensus 165 ~~~~~~vgD~~~Di~~a~~~G~~ 187 (232)
.=++..=+|...|++-.+.+-..
T Consensus 134 ~~ei~v~~~~I~~V~VlR~aPCG 156 (217)
T PF02593_consen 134 KVEIEVENGKIKDVKVLRSAPCG 156 (217)
T ss_pred eEEEEecCCcEEEEEEEecCCCc
Confidence 44443333333666666655443
No 332
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=50.99 E-value=12 Score=21.91 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcC
Q 026853 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G 185 (232)
.-|-...++.+++++++++..+..+-+.-..|...+.+|
T Consensus 25 ~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag 63 (76)
T PF03671_consen 25 EAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAG 63 (76)
T ss_dssp TSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHH
T ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhh
Confidence 445667889999999999998888877666666665555
No 333
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=50.70 E-value=17 Score=21.80 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=14.1
Q ss_pred cEEEEeCCCcccccHHHH
Q 026853 10 SCVILDLDGTLLNTDGMF 27 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~ 27 (232)
-.++++-|||.++++..+
T Consensus 41 ~~lvL~eDGTeVddEeYF 58 (78)
T cd01615 41 VTLVLEEDGTEVDDEEYF 58 (78)
T ss_pred eEEEEeCCCcEEccHHHH
Confidence 458899999999875543
No 334
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=49.94 E-value=2.7 Score=31.72 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.2
Q ss_pred cccEEEEeCCCcccccH
Q 026853 8 LMSCVILDLDGTLLNTD 24 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~ 24 (232)
+-|++++|+|+||+.+.
T Consensus 88 ~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 88 GRKTLVLDLDETLVHSS 104 (262)
T ss_pred CCceEEEeCCCcccccc
Confidence 45899999999998664
No 335
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=49.77 E-value=37 Score=26.96 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=45.2
Q ss_pred HHhC-CCCE-EEEeCCc--hHHHHHHHhhhcCCccccceeecccccCCCCCCHHH---HHHHHHhcCCCCCcEEEEeCch
Q 026853 103 LSCH-GVPM-ALASNSH--RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI---FLEAAKRLNMEPSSSLVIEDSV 175 (232)
Q Consensus 103 l~~~-g~~~-~i~s~~~--~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~---~~~~~~~~~~~~~~~~~vgD~~ 175 (232)
|++. ++.+ .|+|+.. ..+-.... +.+++ ...+..+..+.....+.-... +..++++ ..|+-+++.||..
T Consensus 3 l~~~~~~~~~li~tG~H~~~~~g~~~~-~~f~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~Pd~Vlv~GD~~ 78 (346)
T PF02350_consen 3 LQKDPGFELILIVTGQHLDPEMGDTFF-EGFGI-PKPDYLLDSDSQSMAKSTGLAIIELADVLER--EKPDAVLVLGDRN 78 (346)
T ss_dssp HHCSTTEEEEEEEECSS--CHHHHHHH-HHTT---SEEEE--STTS-HHHHHHHHHHHHHHHHHH--HT-SEEEEETTSH
T ss_pred hhhCCCCCEEEEEeCCCCCHHHHHHHH-hhCCC-CCCCcccccccchHHHHHHHHHHHHHHHHHh--cCCCEEEEEcCCc
Confidence 4443 4444 4556664 45445444 66777 566666654331112212222 2333333 3688999999999
Q ss_pred hhhh---hhhhcCCEEEEeCCC
Q 026853 176 IGVV---AGKAAGMEVVAVPSL 194 (232)
Q Consensus 176 ~Di~---~a~~~G~~~i~v~~~ 194 (232)
.=+. +|..++++.+-+..|
T Consensus 79 ~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 79 EALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHTT-EEEEES--
T ss_pred hHHHHHHHHHHhCCCEEEecCC
Confidence 6444 567789898888877
No 336
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=49.61 E-value=18 Score=21.78 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=14.2
Q ss_pred cEEEEeCCCcccccHHHH
Q 026853 10 SCVILDLDGTLLNTDGMF 27 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~ 27 (232)
-.|+++-|||.++++..+
T Consensus 43 ~~lvL~eDGT~VddEeyF 60 (80)
T cd06536 43 ITLVLAEDGTIVEDEDYF 60 (80)
T ss_pred eEEEEecCCcEEccHHHH
Confidence 468899999999885543
No 337
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=49.11 E-value=1.2e+02 Score=23.41 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcCCEEEEeCCCCCcc
Q 026853 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT 198 (232)
Q Consensus 148 kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G~~~i~v~~~~~~~ 198 (232)
-++..-+.+++++.|. ++-.+ |+..||....-.|..++++..|-+.+
T Consensus 224 SSNs~rL~eiA~~~g~-~aylI---d~~~ei~~~w~~~~~~VGvTAGAStP 270 (294)
T COG0761 224 SSNSNRLAEIAKRHGK-PAYLI---DDAEEIDPEWLKGVKTVGVTAGASTP 270 (294)
T ss_pred CccHHHHHHHHHHhCC-CeEEe---CChHhCCHHHhcCccEEEEecCCCCC
Confidence 3455667777777776 33233 67788888888888888887754443
No 338
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=48.31 E-value=38 Score=25.08 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 97 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
.+.+.+|++.|++++.+|..+...+...- +.+|+.
T Consensus 29 ~pv~~el~d~G~~Vi~~SSKT~aE~~~l~-~~l~v~ 63 (274)
T COG3769 29 APVLLELKDAGVPVILCSSKTRAEMLYLQ-KSLGVQ 63 (274)
T ss_pred chHHHHHHHcCCeEEEeccchHHHHHHHH-HhcCCC
Confidence 35778889999999999998888776555 777765
No 339
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=48.27 E-value=20 Score=26.76 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=25.8
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRAT 120 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~ 120 (232)
.+.+++.++++.+++.|+++.+.||+....
T Consensus 84 ll~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 84 ALQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred hhhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 345789999999999999999999997643
No 340
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=47.80 E-value=29 Score=20.21 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCCCcEEEEeCc
Q 026853 153 IFLEAAKRLNMEPSSSLVIEDS 174 (232)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~vgD~ 174 (232)
.+..++++.|+.+.+++.|||-
T Consensus 44 Gv~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 44 GVEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred CHHHHHHHcCCCCCCEEEEccE
Confidence 3677888889999999999974
No 341
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=47.31 E-value=1.2e+02 Score=22.84 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCCEEEEeCCchH--HHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCc
Q 026853 97 NRLIKHLSCHGVPMALASNSHRA--TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~~~~--~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~ 174 (232)
.++++...+.|++++++-+.+.. .+...+.+.+++ .+.+...+... ++-...+++..+....++++||=+
T Consensus 95 ~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l------~i~g~~~Gyf~--~~e~~~i~~~I~~s~~dil~VglG 166 (243)
T PRK03692 95 EALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNV------NIVGSQDGYFT--PEQRQALFERIHASGAKIVTVAMG 166 (243)
T ss_pred HHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCC------EEEEEeCCCCC--HHHHHHHHHHHHhcCCCEEEEECC
Confidence 45666666778889888555332 122233222232 12211122222 333455667777777778888766
Q ss_pred h
Q 026853 175 V 175 (232)
Q Consensus 175 ~ 175 (232)
.
T Consensus 167 ~ 167 (243)
T PRK03692 167 S 167 (243)
T ss_pred C
Confidence 4
No 342
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=46.57 E-value=29 Score=22.52 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 122 (232)
-.+++.+.++.++++|.+++.+|+.......
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la 88 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGSTLA 88 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChHH
Confidence 3456888899999999999999998665443
No 343
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=46.44 E-value=22 Score=21.39 Aligned_cols=18 Identities=44% Similarity=0.732 Sum_probs=14.2
Q ss_pred cEEEEeCCCcccccHHHH
Q 026853 10 SCVILDLDGTLLNTDGMF 27 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~ 27 (232)
-.++++-|||.++++..+
T Consensus 40 ~~lvL~eDGT~Vd~EeyF 57 (79)
T cd06538 40 SSLVLDEDGTGVDTEEFF 57 (79)
T ss_pred cEEEEecCCcEEccHHHH
Confidence 458899999999886543
No 344
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=46.33 E-value=1.4e+02 Score=23.09 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccc-cCCCCC---CHHHHHHHHHhcCCCCCcEEEEe
Q 026853 97 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE-VRTGKP---SPDIFLEAAKRLNMEPSSSLVIE 172 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~-~~~~kp---~~~~~~~~~~~~~~~~~~~~~vg 172 (232)
+++|...++.|+-+..+.-...+.++..+ +...-.. -..++.... .....+ -......+++...++ =+++.+
T Consensus 2 k~lL~~A~~~~yaV~AfN~~n~e~~~avi-~AAe~~~-sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VP--V~lHLD 77 (276)
T cd00947 2 KELLKKAREGGYAVGAFNINNLETLKAIL-EAAEETR-SPVILQISEGAIKYAGLELLVAMVKAAAERASVP--VALHLD 77 (276)
T ss_pred HHHHHHHHHCCceEEEEeeCCHHHHHHHH-HHHHHhC-CCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCC--EEEECC
Confidence 46778888888888877777777766665 2221100 111111111 001111 112344455555554 244444
Q ss_pred Cch--hhhhhhhhcCCEEEEeCCC
Q 026853 173 DSV--IGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 173 D~~--~Di~~a~~~G~~~i~v~~~ 194 (232)
-+. .++..|-.+|+.++++...
T Consensus 78 H~~~~~~i~~ai~~GftSVMiD~S 101 (276)
T cd00947 78 HGSSFELIKRAIRAGFSSVMIDGS 101 (276)
T ss_pred CCCCHHHHHHHHHhCCCEEEeCCC
Confidence 443 6788888899999999874
No 345
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=46.33 E-value=72 Score=21.43 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHhcCCCCC-cEEEEeCc----hh---hhhhhhhcCCEEEEeCC
Q 026853 146 TGKPSPDIFLEAAKRLNMEPS-SSLVIEDS----VI---GVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~-~~~~vgD~----~~---Di~~a~~~G~~~i~v~~ 193 (232)
...|.++.++..+..+|+.++ .+++++++ .. -.-+++.+|..-+.+-.
T Consensus 75 ~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ild 130 (138)
T cd01445 75 SMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILD 130 (138)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeC
Confidence 345667789999999999876 56677764 11 22256677877554443
No 346
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=45.55 E-value=1.4e+02 Score=23.09 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=60.6
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccc----cCC-CCCCHHHHHHHHHhcCCCCCcEE
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----VRT-GKPSPDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~----~~~-~kp~~~~~~~~~~~~~~~~~~~~ 169 (232)
..+++|+..++.||-+.-+--...+++...+ +...-. .-..++.... +.. ..--......+++.++++. ++
T Consensus 5 ~~~~ll~~Ake~~yAvpAfN~~nlE~~~Ail-eaA~e~-~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV--~l 80 (286)
T COG0191 5 SMKELLDKAKENGYAVPAFNINNLETLQAIL-EAAEEE-KSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPV--AL 80 (286)
T ss_pred cHHHHHHHHHHcCCceeeeeecCHHHHHHHH-HHHHHh-CCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCE--EE
Confidence 3478889999998888888777777777776 322110 0111111111 111 1222345667778888653 45
Q ss_pred EEe--CchhhhhhhhhcCCEEEEeCCCCC
Q 026853 170 VIE--DSVIGVVAGKAAGMEVVAVPSLPK 196 (232)
Q Consensus 170 ~vg--D~~~Di~~a~~~G~~~i~v~~~~~ 196 (232)
.-+ ++..++..+-.+|++++++...+-
T Consensus 81 HlDHg~~~~~~~~ai~~GFsSvMiDgS~~ 109 (286)
T COG0191 81 HLDHGASFEDCKQAIRAGFSSVMIDGSHL 109 (286)
T ss_pred ECCCCCCHHHHHHHHhcCCceEEecCCcC
Confidence 544 455899999999999999988443
No 347
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=45.07 E-value=1.4e+02 Score=22.74 Aligned_cols=97 Identities=10% Similarity=0.149 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCC-----CC----------CCH-HHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT-----GK----------PSP-DIFL 155 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~-----~k----------p~~-~~~~ 155 (232)
-..++.+..+.+.+.+-++.+.++...-. . .. .......++-.++...+... +- |-. +.=.
T Consensus 113 ~V~d~~ea~~~~~~~~~rVflt~G~~~l~-~-f~-~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~ 189 (257)
T COG2099 113 EVADIEEAAEAAKQLGRRVFLTTGRQNLA-H-FV-AADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNK 189 (257)
T ss_pred EecCHHHHHHHHhccCCcEEEecCccchH-H-Hh-cCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHH
Confidence 34578888888888875555555553322 1 22 22233334444433221111 11 211 2334
Q ss_pred HHHHhcCCCCCcEEEEeCchh------hhhhhhhcCCEEEEeCCC
Q 026853 156 EAAKRLNMEPSSSLVIEDSVI------GVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 156 ~~~~~~~~~~~~~~~vgD~~~------Di~~a~~~G~~~i~v~~~ 194 (232)
..+++++++ ++.-=||-. =+.+|+++|+.+|+|.++
T Consensus 190 all~q~~id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 190 ALLEQYRID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHhCCC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 456788765 455445444 499999999999999984
No 348
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=44.91 E-value=36 Score=31.26 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCCC--CcEEEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 151 PDIFLEAAKRLNMEP--SSSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 151 ~~~~~~~~~~~~~~~--~~~~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
.+.|..-++.+|+++ +++-||.|+. |-..+|...||. +|.++
T Consensus 93 q~~yl~sl~~~gi~~~~~dirfved~we~p~lga~glgwe-vw~~g 137 (1000)
T PRK14908 93 QELYLESLKAIGIDLRDHDIRFVHDDWENPTIGAWGLGWE-VWLDG 137 (1000)
T ss_pred HHHHHHHHHHcCCCccccceeEeecCCCCCcccccccccE-EEECC
Confidence 467888999999977 4699999999 899999999998 45544
No 349
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=44.06 E-value=36 Score=24.10 Aligned_cols=71 Identities=15% Similarity=0.043 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHhcC-----CCCCcEEEEeCchhh----------hhhhhhcCCEEEEeCCCCCc-cccc-----hhhhHh
Q 026853 149 PSPDIFLEAAKRLN-----MEPSSSLVIEDSVIG----------VVAGKAAGMEVVAVPSLPKQ-THRY-----TAADEV 207 (232)
Q Consensus 149 p~~~~~~~~~~~~~-----~~~~~~~~vgD~~~D----------i~~a~~~G~~~i~v~~~~~~-~~~~-----~~~~~~ 207 (232)
.-..++..+.+.+. -.+.-++++.|+.++ +..++..|+....|.-|... .... ....+.
T Consensus 89 ~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~~~~~~~~ 168 (186)
T cd01480 89 FTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIACDGKSALY 168 (186)
T ss_pred cHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHcCCcchhh
Confidence 34456666665543 223457889999641 34467889886666654422 1111 222366
Q ss_pred hhhccCcCcccc
Q 026853 208 INSLLDLRPEKW 219 (232)
Q Consensus 208 ~~~l~el~~~l~ 219 (232)
..++.++.+.+.
T Consensus 169 ~~~~~~l~~~~~ 180 (186)
T cd01480 169 RENFAELLWSFF 180 (186)
T ss_pred hcchhhhccccc
Confidence 677777766543
No 350
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=43.71 E-value=1.4e+02 Score=22.60 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHHHhCCCCEE-EEeCCch-HHHHHHHhhhcCCccccceeecccc-cCCC----CCCHHHHHHHHHhcCCC
Q 026853 92 ALPGANRLIKHLSCHGVPMA-LASNSHR-ATIESKISYQHGWNESFSVIVGSDE-VRTG----KPSPDIFLEAAKRLNME 164 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~-i~s~~~~-~~~~~~l~~~~~l~~~~~~~~~~~~-~~~~----kp~~~~~~~~~~~~~~~ 164 (232)
+.+...++++.+++.|...+ +++..+. +.+.... +. ..-|-.+++... .+.. .+..+.++++.+..+.
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~-~~---~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~- 199 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIA-EK---SQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK- 199 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHH-Hh---CCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC-
Confidence 44667888899999998855 5555443 3344444 32 222444444322 1211 1112333333333333
Q ss_pred CCcEEEEeCch---hhhhhhhhcCCEEEEeCC
Q 026853 165 PSSSLVIEDSV---IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 165 ~~~~~~vgD~~---~Di~~a~~~G~~~i~v~~ 193 (232)
-+++|=+. .++..+..+|...+.|.+
T Consensus 200 ---pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 200 ---PVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred ---CEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 25555544 589999999999888876
No 351
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=43.49 E-value=1.5e+02 Score=22.93 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=55.2
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeec-ccccCCCCC---CHHHHHHHHHhcCCCCCcEEE
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEVRTGKP---SPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~-~~~~~~~kp---~~~~~~~~~~~~~~~~~~~~~ 170 (232)
.++++|...++.|+-+..+.-...+.++..+ +...-.. -..++. +......-+ -......++++.+++. ++.
T Consensus 5 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi-~AAee~~-sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPV--alH 80 (286)
T PRK12738 5 STKYLLQDAQANGYAVPAFNIHNAETIQAIL-EVCSEMR-SPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPL--ALH 80 (286)
T ss_pred cHHHHHHHHHHCCceEEEEEeCCHHHHHHHH-HHHHHHC-CCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCE--EEE
Confidence 3678888888888888888877777777666 3221100 011111 111000111 1234455566666542 455
Q ss_pred EeCch--hhhhhhhhcCCEEEEeCCCC
Q 026853 171 IEDSV--IGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 171 vgD~~--~Di~~a~~~G~~~i~v~~~~ 195 (232)
.+-+. ..+..|-.+|+.+|++....
T Consensus 81 LDHg~~~e~i~~ai~~GFtSVM~DgS~ 107 (286)
T PRK12738 81 LDHHESLDDIRRKVHAGVRSAMIDGSH 107 (286)
T ss_pred CCCCCCHHHHHHHHHcCCCeEeecCCC
Confidence 54443 67778888999999998743
No 352
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=43.34 E-value=1.7e+02 Score=23.44 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHhCCCCEEEEe-CCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEe
Q 026853 94 PGANRLIKHLSCHGVPMALAS-NSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vg 172 (232)
|-+.-.|+.|++.|+.-++++ +...+.+...+.+..++...+..+.... ..-....+..+.+.++. ..=+++-|
T Consensus 33 Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~~----~lGTag~l~~a~~~l~~-~~f~v~~G 107 (358)
T COG1208 33 PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEKE----PLGTAGALKNALDLLGG-DDFLVLNG 107 (358)
T ss_pred cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCCceEEEecCC----cCccHHHHHHHHHhcCC-CcEEEEEC
Confidence 455667888988887755555 5566666655533222222333333222 22356788888888876 34567899
Q ss_pred Cchhhh
Q 026853 173 DSVIGV 178 (232)
Q Consensus 173 D~~~Di 178 (232)
|...|+
T Consensus 108 Dv~~~~ 113 (358)
T COG1208 108 DVLTDL 113 (358)
T ss_pred Ceeecc
Confidence 999774
No 353
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=43.23 E-value=14 Score=29.70 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=26.3
Q ss_pred ccHHhHHHHHHHHHHhhhccCCCCCcH-HHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 70 CAKHEFVNEVYSMFSDHLCKVKALPGA-NRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
.+.+++.+.+.++..+....+.+..|+ ++.++.+++.+..+.|||-+..-...+.+
T Consensus 136 ~t~d~~~~~ie~qa~~GVDfmtiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~ 192 (420)
T PF01964_consen 136 MTEDDFFDVIEKQAKDGVDFMTIHCGITRETLERLKKSGRIMGIVSRGGSILAAWML 192 (420)
T ss_dssp --HHHHHHHHHHHHHHT--EEEE-TT--GGGGGGGT--TSSS----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHhhhccccCccccchHHHHHHHH
Confidence 345555555555555555555555654 55666777666667777776665555444
No 354
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=43.19 E-value=99 Score=25.03 Aligned_cols=85 Identities=15% Similarity=0.207 Sum_probs=49.5
Q ss_pred HHHHHHHHhCC-C-CEEEEeCCch--HHHHHHHhhhcCCc-cccceeecccccCCCCCCH---HHHHHHHHhcCCCCCcE
Q 026853 97 NRLIKHLSCHG-V-PMALASNSHR--ATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSP---DIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 97 ~~~l~~l~~~g-~-~~~i~s~~~~--~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~kp~~---~~~~~~~~~~~~~~~~~ 168 (232)
..++.++.+.+ + ..+++|+... +.....+ +.+++. +.++.-+.-+.-..++-.. ..+..+++ ...|+-+
T Consensus 20 apli~~~~~~~~~~~~vi~TGQH~d~em~~~~l-e~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~--~~kPD~V 96 (383)
T COG0381 20 APLVKALEKDPDFELIVIHTGQHRDYEMLDQVL-ELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLE--EEKPDLV 96 (383)
T ss_pred hHHHHHHHhCCCCceEEEEecccccHHHHHHHH-HHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHH--hhCCCEE
Confidence 45677777764 3 3567787766 7777777 888887 5444433211101111111 12333343 4678999
Q ss_pred EEEeCchhhhhhhhhc
Q 026853 169 LVIEDSVIGVVAGKAA 184 (232)
Q Consensus 169 ~~vgD~~~Di~~a~~~ 184 (232)
++-||+..=+.+|..|
T Consensus 97 lVhGDT~t~lA~alaa 112 (383)
T COG0381 97 LVHGDTNTTLAGALAA 112 (383)
T ss_pred EEeCCcchHHHHHHHH
Confidence 9999999877754443
No 355
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=42.67 E-value=21 Score=19.75 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=20.8
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHH
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESK 124 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~ 124 (232)
|+-.+.|+.|.+.|.++.|++-......+..
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~eF~~CW~n 32 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYSEFQYCWEN 32 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCeEEecCcHHHHHHHHH
Confidence 3456889999999999999986665555543
No 356
>PLN02444 HMP-P synthase
Probab=41.97 E-value=1.2e+02 Score=25.95 Aligned_cols=54 Identities=9% Similarity=-0.021 Sum_probs=33.1
Q ss_pred ccHHhHHHHHHHHHHhhhccCCCCCcH-HHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 70 CAKHEFVNEVYSMFSDHLCKVKALPGA-NRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
.+.+.+.+.+.++.++....+.+.-|+ ++.+..++ +..+.|||-+..-...+.+
T Consensus 297 lt~d~~~d~ieeQaeqGVDfmTIH~Gv~~~~v~~~~--~R~tgIVSRGGSi~a~Wml 351 (642)
T PLN02444 297 LTWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTA--KRMTGIVSRGGSIHAKWCL 351 (642)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHh--CcccCceeCCcHHHHHHHH
Confidence 345555555666666655556666665 44555554 4567788887776666555
No 357
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=41.77 E-value=56 Score=24.95 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=29.4
Q ss_pred CCCCCcHHHHHHHHHhC-CCCEEEEeCCchHHHHHHH
Q 026853 90 VKALPGANRLIKHLSCH-GVPMALASNSHRATIESKI 125 (232)
Q Consensus 90 ~~~~~~~~~~l~~l~~~-g~~~~i~s~~~~~~~~~~l 125 (232)
..+.+++.++|..|.++ +..++|+|+......+..+
T Consensus 39 a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~ 75 (266)
T COG1877 39 AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLF 75 (266)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhc
Confidence 36788899999999987 2349999999998877665
No 358
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=41.74 E-value=31 Score=22.49 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 122 (232)
-.+.+.+.++.++++|.+++.+|+.......
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 4567889999999999999999998665443
No 359
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=41.72 E-value=61 Score=21.60 Aligned_cols=85 Identities=15% Similarity=0.086 Sum_probs=40.5
Q ss_pred HHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhh
Q 026853 101 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180 (232)
Q Consensus 101 ~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~ 180 (232)
..|.+-|+....+.....-.-. ....+.....-++.+++..... ++ .+..+++.+++.+++++++. +..+.+
T Consensus 7 ~~LqeMGItqW~Lr~P~~L~g~----~~i~lp~~~rLliVs~~~p~~~-~~-L~~dVLrsl~L~~~q~~~lt--peq~~~ 78 (128)
T PF03603_consen 7 WLLQEMGITQWQLRRPEVLQGE----IAISLPESCRLLIVSDELPQLD-DP-LFQDVLRSLKLTPEQVLHLT--PEQLAM 78 (128)
T ss_dssp HHHHHCT--EEEES-GGGTS------S-----TT--EEEE-SS---TT-SH-HHHHHHHHTT--GGGEEEE---CCGGGG
T ss_pred HHHHHcCCCeEEeCCccccCCC----ccccCcccceEEEEeCCCCCcc-Ch-HHHHHHHHcCCCHHHhhccC--HHHHhh
Confidence 3466777777777655322211 2234556666777776655332 33 99999999999999999874 344555
Q ss_pred hhhcCCEEEEeCC
Q 026853 181 GKAAGMEVVAVPS 193 (232)
Q Consensus 181 a~~~G~~~i~v~~ 193 (232)
...-...-+|..+
T Consensus 79 L~~~~~~~~W~lg 91 (128)
T PF03603_consen 79 LPEDHPCWCWFLG 91 (128)
T ss_dssp S-TT-B-EEEEES
T ss_pred CcCCCCCcEEEcc
Confidence 5444444456555
No 360
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=41.44 E-value=1.7e+02 Score=22.72 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=57.5
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcC-Cccccceeecccc-cCCCCCC---HHHHHHHHHhcCCCCCcEE
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-WNESFSVIVGSDE-VRTGKPS---PDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~-l~~~~~~~~~~~~-~~~~kp~---~~~~~~~~~~~~~~~~~~~ 169 (232)
.++++|...++.++-+..+.-...+.++..+ +... ... ..++.... ....-+. ......++++..++ =++
T Consensus 5 ~~~~~l~~A~~~~yaV~AfN~~n~e~~~avi-~AAee~~s--PvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VP--Val 79 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPAFNIHNLETLQVVV-ETAAELRS--PVILAGTPGTFSYAGTDYIVAIAEVAARKYNIP--LAL 79 (284)
T ss_pred cHHHHHHHHHHcCceEEEEEeCCHHHHHHHH-HHHHHhCC--CEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 4678888888888988888888888777766 3221 111 11221111 0001111 13345566666664 245
Q ss_pred EEeCch--hhhhhhhhcCCEEEEeCCCC
Q 026853 170 VIEDSV--IGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 170 ~vgD~~--~Di~~a~~~G~~~i~v~~~~ 195 (232)
..+-+. ..+..|-.+|+.+|++...+
T Consensus 80 HLDH~~~~e~i~~ai~~GftSVMiDgS~ 107 (284)
T PRK12737 80 HLDHHEDLDDIKKKVRAGIRSVMIDGSH 107 (284)
T ss_pred ECCCCCCHHHHHHHHHcCCCeEEecCCC
Confidence 554443 68888999999999998743
No 361
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=41.07 E-value=16 Score=26.06 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=12.0
Q ss_pred cEEEEeCCCccccc
Q 026853 10 SCVILDLDGTLLNT 23 (232)
Q Consensus 10 k~i~fDlDGTL~~~ 23 (232)
+.|-||+|||+.-.
T Consensus 59 ~~v~~D~~GT~m~i 72 (271)
T PF06901_consen 59 HTVTFDFQGTKMVI 72 (271)
T ss_pred eeEEEeccceEEEe
Confidence 57999999999854
No 362
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=40.77 E-value=1.7e+02 Score=22.67 Aligned_cols=98 Identities=8% Similarity=0.072 Sum_probs=58.3
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcC-Cccccceeecc-c-ccCCCCC---CHHHHHHHHHhcCCCCCcE
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-WNESFSVIVGS-D-EVRTGKP---SPDIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~-l~~~~~~~~~~-~-~~~~~kp---~~~~~~~~~~~~~~~~~~~ 168 (232)
.++++|...++.+|-+..+.-...+.++..+ +-.. ... ..++.. . .....-+ -....+.++++..++..=+
T Consensus 5 ~~~~lL~~A~~~~yAV~AfN~~n~e~~~avi-~AAe~~~s--PvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~ 81 (285)
T PRK07709 5 SMKEMLNKALEGKYAVGQFNMNNLEWTQAIL-AAAEEEKS--PVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVA 81 (285)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHH-HHHHHHCC--CEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEE
Confidence 4678888888888888888887777777666 3221 111 111111 1 1111011 1234555566655323345
Q ss_pred EEEeCch--hhhhhhhhcCCEEEEeCCCC
Q 026853 169 LVIEDSV--IGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 169 ~~vgD~~--~Di~~a~~~G~~~i~v~~~~ 195 (232)
++.+-+. .++..|-.+|+.++++...+
T Consensus 82 lHLDHg~~~e~i~~ai~~GftSVM~DgS~ 110 (285)
T PRK07709 82 IHLDHGSSFEKCKEAIDAGFTSVMIDASH 110 (285)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence 6666555 68888999999999998743
No 363
>PLN02591 tryptophan synthase
Probab=40.39 E-value=1.6e+02 Score=22.28 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHHHhCCCCEE-EEeCCch-HHHHHHHhhhcCCccccceeecc-cccCCCCCCHHHHHHHHHhcCCCCCcE
Q 026853 92 ALPGANRLIKHLSCHGVPMA-LASNSHR-ATIESKISYQHGWNESFSVIVGS-DEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~-i~s~~~~-~~~~~~l~~~~~l~~~~~~~~~~-~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (232)
+.+...++.+.+++.|+..+ ++|.++. +.+.... +. ..-|=..++. ...+.....+..+...+++..-..+--
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia-~~---~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~P 191 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIA-EA---SEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKP 191 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-Hh---CCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCc
Confidence 34567788888888886654 4445543 3344343 22 2223334432 222322222333444333322112333
Q ss_pred EEEeCch---hhhhhhhhcCCEEEEeCC
Q 026853 169 LVIEDSV---IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 169 ~~vgD~~---~Di~~a~~~G~~~i~v~~ 193 (232)
+++|=+. .|+..+...|...+.|.+
T Consensus 192 v~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 192 VAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred eEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 5555554 599999999999888877
No 364
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=40.29 E-value=1.8e+02 Score=22.65 Aligned_cols=99 Identities=10% Similarity=0.088 Sum_probs=56.7
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcC-CccccceeecccccCCCC-CCH----HHHHHHHHhcCCCCCc
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-WNESFSVIVGSDEVRTGK-PSP----DIFLEAAKRLNMEPSS 167 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~-l~~~~~~~~~~~~~~~~k-p~~----~~~~~~~~~~~~~~~~ 167 (232)
-.++++|...++.|+-+..+.-...+.++..+ +... ... ..++........- ... .....++++.+.+..=
T Consensus 4 v~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi-~AAee~~s--PvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV 80 (288)
T TIGR00167 4 VDVKELLQDAKEEGYAIPAFNINNLETINAVL-EAAAEEKS--PVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPV 80 (288)
T ss_pred ccHHHHHHHHHHCCceEEEEEECCHHHHHHHH-HHHHHHCC--CEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcE
Confidence 34678899999999988888877777777666 3221 111 1122111111111 112 2344455555322233
Q ss_pred EEEEeCch--hhhhhhhhcCCEEEEeCCCC
Q 026853 168 SLVIEDSV--IGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 168 ~~~vgD~~--~Di~~a~~~G~~~i~v~~~~ 195 (232)
+++.+-+. .++..|-.+|+.++++....
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVMiDgS~ 110 (288)
T TIGR00167 81 ALHLDHGASEEDCAQAVKAGFSSVMIDGSH 110 (288)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEecCCC
Confidence 45554443 67888889999999998843
No 365
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=40.14 E-value=91 Score=19.60 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=29.4
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhc
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH 129 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~ 129 (232)
...-|.++.+..++...-+++|+..+.+...+..+ +++
T Consensus 19 kvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~i-eyY 56 (100)
T COG1911 19 KVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDI-EYY 56 (100)
T ss_pred CEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHH-HHH
Confidence 45568899999999877788888877777777777 555
No 366
>PF13700 DUF4158: Domain of unknown function (DUF4158)
Probab=40.13 E-value=97 Score=21.52 Aligned_cols=79 Identities=14% Similarity=-0.022 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHHHHHHhhh-ccCCCCCcHHHHHHHHHhCC
Q 026853 29 EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHG 107 (232)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g 107 (232)
..+..+.++++++...-......+.+.......+.+.+|+..........+.+...+.. ....+..-+..++++|+++.
T Consensus 70 ~~i~~va~ql~~~~~~~~~y~~r~~T~~~h~~~I~~~lg~r~~~~~~~~~L~~~l~~~a~~~~~~~~l~~~~~~~L~~~r 149 (166)
T PF13700_consen 70 ADIEYVAKQLGLPPSDLSSYAQRSRTRYRHRAEIREYLGYRPFDESDRAELEEWLREAARTTDDPDDLFNALIEWLRQRR 149 (166)
T ss_pred HHHHHHHHHhCCchHHHHhhhhhhhHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 34555556676654322222223455566777778888876433333334444333322 22333335566677777764
No 367
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=40.10 E-value=5.7 Score=20.70 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 98 RLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 98 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
++.++|++.|...+-+|...+....+.|
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL 37 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKL 37 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHH
Confidence 4567788889999999999988877776
No 368
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=39.48 E-value=75 Score=23.32 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=23.9
Q ss_pred CCCCc-HHHHHHHHHhCCCCEEEEeCCchH
Q 026853 91 KALPG-ANRLIKHLSCHGVPMALASNSHRA 119 (232)
Q Consensus 91 ~~~~~-~~~~l~~l~~~g~~~~i~s~~~~~ 119 (232)
.+.++ +.++++.+++.|+.+++.||+...
T Consensus 50 llq~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 50 LMQAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred HcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 35566 579999999999999999999543
No 369
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=39.42 E-value=2.1e+02 Score=23.25 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=47.9
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEE-eCCchHHHHHHHhhhcCC---cccccee--------------ecccc------cCC
Q 026853 91 KALPGANRLIKHLSCHGVPMALA-SNSHRATIESKISYQHGW---NESFSVI--------------VGSDE------VRT 146 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~-s~~~~~~~~~~l~~~~~l---~~~~~~~--------------~~~~~------~~~ 146 (232)
+-.++..+++++|+++|+.+.+- |+.+.+.+.+.+ +. |. .+.|... +..++ ..-
T Consensus 174 PE~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~-~~-Ga~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg 251 (380)
T TIGR00221 174 PEEDQHFELIRHLKDAGIIVSAGHTNATYELAKAAF-KA-GATHATHLYNAMSPIHHREPGVIGAVLDHDDVYTEIIADG 251 (380)
T ss_pred CCCCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHH-Hc-CCCeeeeeccCCCCcCCCCCcHHHHHhcCCCcEEEEEcCC
Confidence 34578999999999999866543 677777776665 32 32 1111110 00010 011
Q ss_pred CCCCHHHHHHHHHhcCCCCCcEEEEeCchh
Q 026853 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVI 176 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~ 176 (232)
-.-.|..++.+.+.-+ +++++.|-|+..
T Consensus 252 ~Hv~p~~~~~~~r~kg--~~~~~lvtDa~~ 279 (380)
T TIGR00221 252 IHIHPLNIRLAKKLKG--DSKLCLVTDSMA 279 (380)
T ss_pred CcCCHHHHHHHHHhcC--CCcEEEEecccc
Confidence 1224666776666655 468899999774
No 370
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.26 E-value=42 Score=21.77 Aligned_cols=30 Identities=7% Similarity=0.032 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATI 121 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~ 121 (232)
-.+.+.+.++.++++|.+++.+|+......
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSPL 88 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCcH
Confidence 446788889999999999999999876543
No 371
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=39.02 E-value=1.8e+02 Score=22.51 Aligned_cols=97 Identities=12% Similarity=0.166 Sum_probs=55.7
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecc-c-ccC-CC-CCCHHHHHHHHHhcCCCCCcEEE
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS-D-EVR-TG-KPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~-~-~~~-~~-kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
..+++|...++.++-+..+.-...+.++..++..-.... ..++.. . ... .+ ..-......++++..++ =++.
T Consensus 5 ~~k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~s--PvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VP--V~lH 80 (284)
T PRK09195 5 STKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHS--PVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHP--LALH 80 (284)
T ss_pred cHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCC--CEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCC--EEEE
Confidence 367788888888888888877777777666621111111 111111 1 110 01 01123455566666664 3455
Q ss_pred EeCc--hhhhhhhhhcCCEEEEeCCCC
Q 026853 171 IEDS--VIGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 171 vgD~--~~Di~~a~~~G~~~i~v~~~~ 195 (232)
.+-+ ...+..|-.+|+.++++...+
T Consensus 81 LDHg~~~e~i~~Ai~~GftSVM~DgS~ 107 (284)
T PRK09195 81 LDHHEKFDDIAQKVRSGVRSVMIDGSH 107 (284)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEeCCCC
Confidence 5544 368888889999999998743
No 372
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=38.65 E-value=2.6e+02 Score=24.06 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=26.0
Q ss_pred HhcCCC-CCcEEEEeCch-hhhhhhhh----cCCEEEEeCC
Q 026853 159 KRLNME-PSSSLVIEDSV-IGVVAGKA----AGMEVVAVPS 193 (232)
Q Consensus 159 ~~~~~~-~~~~~~vgD~~-~Di~~a~~----~G~~~i~v~~ 193 (232)
...+.. .+-++.||-+. .|+..+-+ .|++.+.|++
T Consensus 263 ~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 263 GNEGFTRSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred HhcCCCCCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 344543 34567899988 89988776 5999999988
No 373
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=38.56 E-value=90 Score=22.66 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhcCCCCCcEEEEeCch--hhhhhhhh-cCCEEEEeCCC-CCccccchhhhHhhhhccCcCc
Q 026853 150 SPDIFLEAAKRLNMEPSSSLVIEDSV--IGVVAGKA-AGMEVVAVPSL-PKQTHRYTAADEVINSLLDLRP 216 (232)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~vgD~~--~Di~~a~~-~G~~~i~v~~~-~~~~~~~~~~~~~~~~l~el~~ 216 (232)
+...+++.++.+.-+.+=.+.-||-. +|-+..++ .|.+.+.+.+| .. + ..+.++...+.++..
T Consensus 26 KTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~C-H---~da~m~~~ai~~l~~ 92 (202)
T COG0378 26 KTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGC-H---LDASMNLEAIEELVL 92 (202)
T ss_pred HHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCcc-C---CcHHHHHHHHHHHhh
Confidence 46788888888876666678889988 68888999 99999999997 44 2 224445555555443
No 374
>PRK08304 stage V sporulation protein AD; Validated
Probab=38.49 E-value=1.2e+02 Score=24.19 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=43.5
Q ss_pred hhcCCccccceeecccccCCC---CCC----HHHHHHHHHhcCCCCCc--EEEEeCchhhh----hhhhhcCCEEEEeCC
Q 026853 127 YQHGWNESFSVIVGSDEVRTG---KPS----PDIFLEAAKRLNMEPSS--SLVIEDSVIGV----VAGKAAGMEVVAVPS 193 (232)
Q Consensus 127 ~~~~l~~~~~~~~~~~~~~~~---kp~----~~~~~~~~~~~~~~~~~--~~~vgD~~~Di----~~a~~~G~~~i~v~~ 193 (232)
..-.|..+||.+..-..++.. +.. .++.+.++++.|+++++ .+++||..+-. ..++.+|+.+..+..
T Consensus 30 ~~gpl~~~fd~~~~d~~~Ge~swEkAeseLa~eAa~~ALekAGI~~~DID~lI~Gdll~Q~~sAs~vA~~LGIPa~dV~g 109 (337)
T PRK08304 30 GEGPLGKYFDKILDDDYCGEKSWEKAERKMMEDAIQQALQKANLKKSDIDYLLAGDLLNQIISANFAARELGIPFLGLYG 109 (337)
T ss_pred cCCCChhhCCeEecccccCCcCccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCcchHHHHHHHhCCcEEEEec
Confidence 334578899988755444432 222 34677788888998875 68899875422 345778887666655
No 375
>smart00455 RBD Raf-like Ras-binding domain.
Probab=37.45 E-value=41 Score=19.62 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=23.5
Q ss_pred cCCCCCCHHHHHHHHHhcCCCCCcEEEE
Q 026853 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (232)
Q Consensus 144 ~~~~kp~~~~~~~~~~~~~~~~~~~~~v 171 (232)
...+++-.+++..++++.|+.++++..+
T Consensus 16 vrpg~tl~e~L~~~~~kr~l~~~~~~v~ 43 (70)
T smart00455 16 VRPGKTVRDALAKALKKRGLNPECCVVR 43 (70)
T ss_pred ECCCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 4457777899999999999999987766
No 376
>PLN02334 ribulose-phosphate 3-epimerase
Probab=37.31 E-value=1.7e+02 Score=21.61 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCC--chHHHHHHHhhhcCCccccceeecccc-cCCCCCCHHHHHHHHHhcCC-CCCcEE
Q 026853 94 PGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGSDE-VRTGKPSPDIFLEAAKRLNM-EPSSSL 169 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~~~l~~~~~~~~~~~~-~~~~kp~~~~~~~~~~~~~~-~~~~~~ 169 (232)
+...+.++.+++.|..+++..+. +.+.....+ ...+ .+++-. .+... ....+..+..+..+.+.... ..-.+.
T Consensus 102 d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~-~~~~-~Dyi~~-~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~ 178 (229)
T PLN02334 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVV-EKGL-VDMVLV-MSVEPGFGGQSFIPSMMDKVRALRKKYPELDIE 178 (229)
T ss_pred hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHH-hccC-CCEEEE-EEEecCCCccccCHHHHHHHHHHHHhCCCCcEE
Confidence 44568889999999888888873 333333232 2100 222211 01111 11122233444333322111 112355
Q ss_pred EE-eCchhhhhhhhhcCCEEEEeCCC
Q 026853 170 VI-EDSVIGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 170 ~v-gD~~~Di~~a~~~G~~~i~v~~~ 194 (232)
+. |=+..++....++|...+.+.+.
T Consensus 179 a~GGI~~e~i~~l~~aGad~vvvgsa 204 (229)
T PLN02334 179 VDGGVGPSTIDKAAEAGANVIVAGSA 204 (229)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEEChH
Confidence 55 45558999999999998888773
No 377
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=37.31 E-value=36 Score=16.68 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=17.1
Q ss_pred cEEEEeCCCcccccHHHHHHHHHHHHHHcCC
Q 026853 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGK 40 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~ 40 (232)
++.++|+++..+..... ..++.+.+++
T Consensus 2 ~V~~yd~~~~~i~~F~S----i~eAa~~l~i 28 (37)
T PF07453_consen 2 PVYVYDLNTNEIKSFDS----IREAARYLGI 28 (37)
T ss_pred eEEEEECCCCeEEEEcC----HHHHHHHhCC
Confidence 56789999998765333 4444455543
No 378
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=37.25 E-value=13 Score=21.92 Aligned_cols=9 Identities=56% Similarity=0.966 Sum_probs=8.2
Q ss_pred EEeCCCccc
Q 026853 13 ILDLDGTLL 21 (232)
Q Consensus 13 ~fDlDGTL~ 21 (232)
=|||+|.++
T Consensus 4 RFdf~G~l~ 12 (73)
T PF08620_consen 4 RFDFDGNLL 12 (73)
T ss_pred cccCCCCEe
Confidence 399999999
No 379
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=37.14 E-value=63 Score=20.60 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=22.8
Q ss_pred CcEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 166 ~~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
.++.++|| ..-+.+++-+|+.++.+..
T Consensus 4 ~kIaVIGD-~dtv~GFrLaGi~~~~v~~ 30 (104)
T PRK01395 4 YKIGVVGD-KDSILPFKALGIDVFPVID 30 (104)
T ss_pred eeEEEEEC-HHHHHHHHHcCCeeEEecC
Confidence 35789999 8889999999998877766
No 380
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=37.03 E-value=1.9e+02 Score=22.36 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=21.0
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
..+++|...++.|+-+..+.-...+.++..+
T Consensus 5 ~~k~ll~~A~~~~yaV~AfN~~n~e~~~avi 35 (283)
T PRK07998 5 NGRILLDRIQEKHVLAGAFNTTNLETTISIL 35 (283)
T ss_pred cHHHHHHHHHHCCCEEEEEeeCCHHHHHHHH
Confidence 3567777777777777777666666665555
No 381
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=36.70 E-value=2.4e+02 Score=23.19 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=35.9
Q ss_pred HHcCCCccHHhHHHHHHHHHHhhh-----------ccCCCCCcHHHHHHHHHhCCCCEEEE-eCCc
Q 026853 64 EDYGLPCAKHEFVNEVYSMFSDHL-----------CKVKALPGANRLIKHLSCHGVPMALA-SNSH 117 (232)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~g~~~~i~-s~~~ 117 (232)
+..+...+.+++.+.+.+....+. .....+|.+.++++.+++.|+++++. ||+.
T Consensus 48 e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 48 EINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGK 113 (404)
T ss_pred hhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCc
Confidence 334555566666666555433211 13456789999999999999999985 8864
No 382
>COG4018 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.65 E-value=42 Score=26.36 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCchhhh----hhhhhcCCEEEEeCC
Q 026853 152 DIFLEAAKRLNMEPSSSLVIEDSVIGV----VAGKAAGMEVVAVPS 193 (232)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~vgD~~~Di----~~a~~~G~~~i~v~~ 193 (232)
+...+..++.|--.+.+++|||++.|+ +++-+.+.....+-.
T Consensus 209 k~VaEtArk~GkGveaI~hvgDGyDdli~G~kA~ve~~vDvfvvEG 254 (505)
T COG4018 209 KRVAETARKSGKGVEAILHVGDGYDDLIDGLKAAVEEVVDVFVVEG 254 (505)
T ss_pred HHHHHHHHHhCCCceeEEEecCCcHHHHHHHHHHHHhcCcEEEEcC
Confidence 445667788898889999999999775 455556666666655
No 383
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=36.21 E-value=1.8e+02 Score=21.48 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHhcCCCCCcEEEEeCch--hhhhh-hhhcCCEEEEeCC
Q 026853 149 PSPDIFLEAAKRLNMEPSSSLVIEDSV--IGVVA-GKAAGMEVVAVPS 193 (232)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~~~vgD~~--~Di~~-a~~~G~~~i~v~~ 193 (232)
++.+.++++.+..+++ +++.|+-. .|+.. +...|+..+.+.+
T Consensus 184 ~~~~~~~~i~~~~~ip---via~GGi~s~~di~~~l~~~gadgV~vg~ 228 (232)
T TIGR03572 184 YDLELIKTVSDAVSIP---VIALGGAGSLDDLVEVALEAGASAVAAAS 228 (232)
T ss_pred CCHHHHHHHHhhCCCC---EEEECCCCCHHHHHHHHHHcCCCEEEEeh
Confidence 5667788888776654 88899655 79888 8889999888876
No 384
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=36.11 E-value=1.6e+02 Score=21.33 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecc-ccc---CCCCCCH---HHHHHHHHhcCCCCCcE
Q 026853 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS-DEV---RTGKPSP---DIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~---~~~kp~~---~~~~~~~~~~~~~~~~~ 168 (232)
+.+.++.+++.|+.+++---+........+ ..+. +|.+-.. ... ....... ..+...++.+|+ .+
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l-~~~~----~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~v 205 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSLSYL-KRLP----VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGL---KV 205 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhhHHHH-HhCC----CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCC---eE
Confidence 688899999999999884322222222233 3222 2322111 101 1111112 233444455554 47
Q ss_pred EEEe-CchhhhhhhhhcCCEEE
Q 026853 169 LVIE-DSVIGVVAGKAAGMEVV 189 (232)
Q Consensus 169 ~~vg-D~~~Di~~a~~~G~~~i 189 (232)
++=| ++..+...++.+|+..+
T Consensus 206 ia~gVe~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 206 VAEGVETEEQLELLRELGCDYV 227 (240)
T ss_pred EEEecCCHHHHHHHHHcCCCee
Confidence 7777 77799999999997533
No 385
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.32 E-value=86 Score=18.50 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhhhhcC
Q 026853 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185 (232)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~~G 185 (232)
....|-...++.+.+++.+++.....|-..--.|..++.+|
T Consensus 34 pestpftavlkfaaeefkvpaatsaiitndgiginpaq~ag 74 (94)
T KOG3483|consen 34 PESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAG 74 (94)
T ss_pred CCCCchHHHHHHHHHHccCCccceeEEecCccccCcccccc
Confidence 44566778889999999999887777776666777888887
No 386
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=35.24 E-value=78 Score=21.10 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=55.4
Q ss_pred HHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhh
Q 026853 102 HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG 181 (232)
Q Consensus 102 ~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a 181 (232)
.|++-|+.-..+.....-.-+ ....+.....-++.+++... ..++ .+..+++.++++++++.++. +..+.+.
T Consensus 7 ~LqemGItqW~Lr~P~~L~g~----~~i~lp~~~rLliV~~~~~~-~~~~-L~~dVLrsl~L~~~q~~~lt--~eq~~~L 78 (128)
T PRK06856 7 LLQQLGITQWVLRRPGVLQGE----IAISLPEHIRLVIVAEELPA-LTDP-LLQDVLRSLTLSPDQVLCLT--PEQVAML 78 (128)
T ss_pred HHHHcCCceEEecCccccCCC----ccccCCccceEEEEeCCCCc-ccCh-HHHHHHHHcCCCHHHeeeeC--HHHHhhC
Confidence 356667777776655332211 11234455555666655442 2233 89999999999999999864 3444444
Q ss_pred hhcCCEEE-EeCCCCCccccchhhhHhhhhccCc
Q 026853 182 KAAGMEVV-AVPSLPKQTHRYTAADEVINSLLDL 214 (232)
Q Consensus 182 ~~~G~~~i-~v~~~~~~~~~~~~~~~~~~~l~el 214 (232)
. .|.... |..+... ......+.+..+.++|+
T Consensus 79 ~-~~~~~~~W~lg~~~-~~~~~~~~l~Sp~L~eL 110 (128)
T PRK06856 79 P-QGHRCNSWLLGTDE-PLSLAGAQWQSPALTEL 110 (128)
T ss_pred C-CCCCceEEECCCcc-cccccCCeEeCcCHHHH
Confidence 2 333333 5554221 22223444455555554
No 387
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=35.02 E-value=1.3e+02 Score=19.48 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=23.3
Q ss_pred ccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCC
Q 026853 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD 43 (232)
Q Consensus 9 ~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~ 43 (232)
=+.|-+|=||=|++......+....++++-|+..+
T Consensus 6 g~~i~~D~eGfL~~~~dW~eevA~~lA~~egI~Lt 40 (109)
T PF04358_consen 6 GKTIETDEEGFLVDPEDWNEEVAEALAKEEGIELT 40 (109)
T ss_dssp TEEEEEETTSEESSGGG--HHHHHHHHHCTT-S--
T ss_pred CEEeeeCCCcCcCChHhCCHHHHHHHHHHcCCCCC
Confidence 36788999999999876666666666677776543
No 388
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=34.73 E-value=75 Score=23.82 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=25.7
Q ss_pred HHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecc
Q 026853 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 141 (232)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~ 141 (232)
+++...+.+..++++|+.....+.+.+ ...++. ..|.++++
T Consensus 27 ~l~~~~~~~~~~v~~TGRs~~~~~~~~-~~~~l~-~Pd~~I~s 67 (247)
T PF05116_consen 27 LLEQQARPEILFVYVTGRSLESVLRLL-REYNLP-QPDYIITS 67 (247)
T ss_dssp HHHHHHCCGEEEEEE-SS-HHHHHHHH-HHCT-E-E-SEEEET
T ss_pred HHHHhhCCCceEEEECCCCHHHHHHHH-HhCCCC-CCCEEEec
Confidence 344344566889999999999988888 666663 34666654
No 389
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=34.61 E-value=68 Score=26.14 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=24.9
Q ss_pred cCCCCCcEEEEeCch--hhhhhhhhcCCEEEEeCC
Q 026853 161 LNMEPSSSLVIEDSV--IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 161 ~~~~~~~~~~vgD~~--~Di~~a~~~G~~~i~v~~ 193 (232)
.|++|++++|-|... .++..|-+.|+.++-+++
T Consensus 92 aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS 126 (394)
T COG0019 92 AGFPPERIVFSGPAKSEEEIAFALELGIKLINVDS 126 (394)
T ss_pred cCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCC
Confidence 378888888877777 577788888877777765
No 390
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=34.60 E-value=1.5e+02 Score=25.30 Aligned_cols=54 Identities=7% Similarity=-0.021 Sum_probs=32.4
Q ss_pred ccHHhHHHHHHHHHHhhhccCCCCCcH-HHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 70 CAKHEFVNEVYSMFSDHLCKVKALPGA-NRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
++.+.+.+.+.++.++......+.-|+ ++.+..++ +....|||-+..-.+.+.+
T Consensus 292 lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~--~R~tgIVSRGGSima~Wml 346 (607)
T PRK09284 292 LTWEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTA--KRVTGIVSRGGSIMAKWCL 346 (607)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHh--CcccCcccCCHHHHHHHHH
Confidence 345555555555555555556666665 44555554 3567788877776666555
No 391
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=34.48 E-value=71 Score=24.70 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhh------hhhcCCEEEEeCCC
Q 026853 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA------GKAAGMEVVAVPSL 194 (232)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~------a~~~G~~~i~v~~~ 194 (232)
...-|.++.|..+++.+||..+.++++=|..+...+ ++.+|..-|.+-.|
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdG 124 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDG 124 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecC
Confidence 456788999999999999998877766555655555 45588887777664
No 392
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=34.26 E-value=1.2e+02 Score=28.10 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=52.2
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHH-HHHHhhhc---CCcc--ccceeecccccCCCCCCHHHHHHHHHhcCCCCC
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATI-ESKISYQH---GWNE--SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~-~~~l~~~~---~l~~--~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 166 (232)
-.+..+.++....+|+++..+....-..- +... .+. .... .|-..+.-+. +-|+.......-+.+.++ .
T Consensus 649 P~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~-~~~~Rd~vEs~l~FlGLiVmeN--kLK~~T~~VI~eL~~AnI--R 723 (1140)
T KOG0208|consen 649 PADYQEVLKEYTHQGFRVIALASKELETSTLQKA-QKLSRDTVESNLEFLGLIVMEN--KLKEETKRVIDELNRANI--R 723 (1140)
T ss_pred CccHHHHHHHHHhCCeEEEEEecCccCcchHHHH-hhccHhhhhccceeeEEEEeec--ccccccHHHHHHHHhhcc--e
Confidence 35778889999999999877755432221 1111 111 1111 2222222222 345555444444555454 5
Q ss_pred cEEEEeCch-hhhhhhhhcCC
Q 026853 167 SSLVIEDSV-IGVVAGKAAGM 186 (232)
Q Consensus 167 ~~~~vgD~~-~Di~~a~~~G~ 186 (232)
.++.-||+. .-+.-|++||+
T Consensus 724 tVMcTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 724 TVMCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred EEEEcCCchheeeehhhcccc
Confidence 677899999 99999999997
No 393
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=34.25 E-value=69 Score=20.74 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 122 (232)
-..+..+.++.+++.|.+++.+|+.......
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~ 95 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSNSESPLA 95 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESSTTSHHH
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCCCCCchh
Confidence 3456778889999999999999988666544
No 394
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=34.13 E-value=1.2e+02 Score=19.40 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCC
Q 026853 98 RLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (232)
Q Consensus 98 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l 131 (232)
+....+.+.|+++++|+-++.+.++... +..++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~-~~~~~ 36 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFC-ELTGF 36 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHH-hccCC
Confidence 4567788899999999999886666665 44443
No 395
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=33.64 E-value=75 Score=20.27 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=25.3
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcC
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHG 130 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~ 130 (232)
.+.++..++++.|+.++.+|....+.....+ +..+
T Consensus 47 ~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~-~~~~ 81 (124)
T PF00578_consen 47 ELNELYKKYKDKGVQVIGISTDDPEEIKQFL-EEYG 81 (124)
T ss_dssp HHHHHHHHHHTTTEEEEEEESSSHHHHHHHH-HHHT
T ss_pred HHHHHhhhhccceEEeeecccccccchhhhh-hhhc
Confidence 4456677777778889888888887666666 5545
No 396
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.33 E-value=56 Score=22.90 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 122 (232)
-.+.+.+.++.++++|.+++.+|+.......
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la 114 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPESTLG 114 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 3467888899999999999999998766544
No 397
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=33.31 E-value=53 Score=25.75 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=26.1
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCch
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSHR 118 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~ 118 (232)
+..+.|++.++++.+++.|..+.+.||+..
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 455779999999999999999999999964
No 398
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=33.25 E-value=1.2e+02 Score=24.08 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHH---HHHH---Hhc-CCCCCcE
Q 026853 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF---LEAA---KRL-NMEPSSS 168 (232)
Q Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~---~~~~---~~~-~~~~~~~ 168 (232)
.+.++.+|.+.|+.+.+.+-. ...+...| +.+|+ +.+..+.... .+ ..... .+.. +.. +..|+ +
T Consensus 16 Fk~~I~eL~~~GheV~it~R~-~~~~~~LL-~~yg~----~y~~iG~~g~-~~-~~Kl~~~~~R~~~l~~~~~~~~pD-v 86 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITARD-KDETEELL-DLYGI----DYIVIGKHGD-SL-YGKLLESIERQYKLLKLIKKFKPD-V 86 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEec-cchHHHHH-HHcCC----CeEEEcCCCC-CH-HHHHHHHHHHHHHHHHHHHhhCCC-E
Confidence 367789999999877666654 44555566 77775 3333222211 11 11111 1111 111 13343 3
Q ss_pred EEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 169 LVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 169 ~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
+.-.-|..-...|.-+|.++|.+..
T Consensus 87 ~is~~s~~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 87 AISFGSPEAARVAFGLGIPSIVFND 111 (335)
T ss_pred EEecCcHHHHHHHHHhCCCeEEEec
Confidence 3333444556688999999999987
No 399
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=33.21 E-value=2.1e+02 Score=21.59 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=63.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhh-hcCCccccceeecccccCCCCC-----------CHHHHHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISY-QHGWNESFSVIVGSDEVRTGKP-----------SPDIFLEAA 158 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~-~~~l~~~~~~~~~~~~~~~~kp-----------~~~~~~~~~ 158 (232)
....+..+..+.+.+.+...+++|.+...... .. . ...-...+-.+....+...+-| ..+.=..++
T Consensus 113 ~~v~~~~eA~~~l~~~~~~~iflttGsk~L~~-f~-~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~al~ 190 (249)
T PF02571_consen 113 HYVDSYEEAAELLKELGGGRIFLTTGSKNLPP-FV-PAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRALF 190 (249)
T ss_pred EEeCCHHHHHHHHhhcCCCCEEEeCchhhHHH-Hh-hcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHHHH
Confidence 34567888888887776455566655554322 22 1 1111222222322222121211 123445566
Q ss_pred HhcCCCCCcEEEEeCch-----hhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCccc
Q 026853 159 KRLNMEPSSSLVIEDSV-----IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (232)
Q Consensus 159 ~~~~~~~~~~~~vgD~~-----~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l 218 (232)
++++++ ++.-=||- .=+.+|+++|++++.+.++.... +..++.+++|+..++
T Consensus 191 ~~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~-----~~~~~~~~~e~l~~l 247 (249)
T PF02571_consen 191 RQYGID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEPY-----GDPVVETIEELLDWL 247 (249)
T ss_pred HHcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCC-----CCcccCCHHHHHHHH
Confidence 888875 45543432 46889999999999998833221 222356666665544
No 400
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=33.16 E-value=1.8e+02 Score=21.28 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHhcCC-CCCcEEEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 147 GKPSPDIFLEAAKRLNM-EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~-~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
.+|++.... ...++.. +..+++.+|.+. .|...+...|+.+++|.-
T Consensus 17 ~~p~~~l~~-~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~ 64 (213)
T TIGR03840 17 SEVNPLLVK-HWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVEL 64 (213)
T ss_pred CCCCHHHHH-HHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeC
Confidence 466665544 4444433 446899999999 788888899999999876
No 401
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=33.15 E-value=1.8e+02 Score=21.65 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHhcCCC-CCcEEEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 146 TGKPSPDIFLEAAKRLNME-PSSSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~-~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
..+|+|...+.. ..+..+ ..++++.|-+. .|+.-....|+.+++|.-
T Consensus 25 ~~~pnp~L~~~~-~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDl 73 (226)
T PRK13256 25 QESPNEFLVKHF-SKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIEL 73 (226)
T ss_pred cCCCCHHHHHHH-HhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEec
Confidence 466777665665 445543 46899999999 799999999999998875
No 402
>KOG4779 consensus Predicted membrane protein [Function unknown]
Probab=32.33 E-value=36 Score=19.77 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=17.4
Q ss_pred HHHHHhcCCCCCcEEEEeCchhhhh
Q 026853 155 LEAAKRLNMEPSSSLVIEDSVIGVV 179 (232)
Q Consensus 155 ~~~~~~~~~~~~~~~~vgD~~~Di~ 179 (232)
++.+++.|.+.++.+.|||..+-++
T Consensus 25 eRFL~riGws~d~~~gFG~~q~tiK 49 (82)
T KOG4779|consen 25 ERFLKRIGWSTDQGIGFGEDQPTIK 49 (82)
T ss_pred HHHHHHhCcCcccCcccCCCCccHH
Confidence 4456677887788888888665544
No 403
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=32.26 E-value=1.2e+02 Score=24.44 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=25.1
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCc
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSH 117 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~ 117 (232)
+..+.+++.++++.+++.|+.+.+.||+.
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 45567899999999999999999999995
No 404
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=32.17 E-value=1.8e+02 Score=23.49 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=24.9
Q ss_pred eCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCC
Q 026853 15 DLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP 69 (232)
Q Consensus 15 DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (232)
++|++++.+.......+...++..|++..........-.......+.++++++++
T Consensus 27 ~id~vi~g~E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIp 81 (379)
T PRK13790 27 NVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIP 81 (379)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCC
Confidence 3455555554433444555566666532211111111122334455566666665
No 405
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=32.09 E-value=35 Score=20.48 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=12.6
Q ss_pred cEEEEeCCCcccccHH
Q 026853 10 SCVILDLDGTLLNTDG 25 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~ 25 (232)
-.++++=|||.++.+.
T Consensus 41 ~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 41 VRLVLEEDGTEVDDEE 56 (78)
T ss_dssp CEEEETTTTCBESSCH
T ss_pred cEEEEeCCCcEEccHH
Confidence 3478899999998754
No 406
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=31.56 E-value=27 Score=29.26 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=22.3
Q ss_pred HHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCc
Q 026853 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (232)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~ 132 (232)
..+.++..+ +.+++|..++-.++..+++++|.+
T Consensus 138 ~~~v~~~~~-~~~vv~~~PrvMve~Flkeyl~~d 170 (525)
T PLN02588 138 MFQVLKRGG-KRVGVSDLPQVMIDVFLRDYLEIE 170 (525)
T ss_pred HHHHHhhcC-cEEEEecCCHHHHHHHHHHhcCcc
Confidence 344444444 566666688888999998887754
No 407
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=31.51 E-value=2.7e+02 Score=22.30 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=25.7
Q ss_pred CCCCcEEEEeCchh---hhhhhhhcCCEEEEeCCCCC
Q 026853 163 MEPSSSLVIEDSVI---GVVAGKAAGMEVVAVPSLPK 196 (232)
Q Consensus 163 ~~~~~~~~vgD~~~---Di~~a~~~G~~~i~v~~~~~ 196 (232)
..|+-++..||+.. -..+|...|++++-+..|..
T Consensus 92 ~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~r 128 (365)
T TIGR03568 92 LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEV 128 (365)
T ss_pred hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCcc
Confidence 45888999999974 45567778999887777543
No 408
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=31.34 E-value=1.8e+02 Score=20.27 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=17.6
Q ss_pred cEEEEeCCCcccccHHHHHHHHHHHHHHcC
Q 026853 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYG 39 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~ 39 (232)
-+++.|.|++.........+.+...+.++|
T Consensus 25 iAvfID~~Nv~~~~~~~d~~~i~~~ls~~G 54 (160)
T TIGR00288 25 IGLLVDGPNMLRKEFNIDLDEIREILSEYG 54 (160)
T ss_pred EEEEEeCCccChhhhccCHHHHHHHHHhcC
Confidence 378889999974322212344555555665
No 409
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=31.09 E-value=2.5e+02 Score=21.76 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=54.2
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcC-Cccccceeeccccc-CCCCCC---HHHHHHHHHhcCCCCCcEE
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-WNESFSVIVGSDEV-RTGKPS---PDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~-l~~~~~~~~~~~~~-~~~kp~---~~~~~~~~~~~~~~~~~~~ 169 (232)
.++++|...++.++-+..+.-...+.++..+ +... ... ..++..... ....+. ......++++..++ =++
T Consensus 5 ~~k~iL~~A~~~~yaV~AfNv~n~e~~~avi-~AAee~~s--PvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VP--Val 79 (284)
T PRK12857 5 TVAELLKKAEKGGYAVGAFNCNNMEIVQAIV-AAAEAEKS--PVIIQASQGAIKYAGIEYISAMVRTAAEKASVP--VAL 79 (284)
T ss_pred cHHHHHHHHHHcCCeEEEEEeCCHHHHHHHH-HHHHHhCC--CEEEEechhHhhhCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 4677888888888888877777777766666 2221 111 111111110 001111 12345556666664 244
Q ss_pred EEeCch--hhhhhhhhcCCEEEEeCCCC
Q 026853 170 VIEDSV--IGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 170 ~vgD~~--~Di~~a~~~G~~~i~v~~~~ 195 (232)
..+-+. .++..|-.+|+.+|++....
T Consensus 80 HLDH~~~~e~i~~ai~~GftSVM~DgS~ 107 (284)
T PRK12857 80 HLDHGTDFEQVMKCIRNGFTSVMIDGSK 107 (284)
T ss_pred ECCCCCCHHHHHHHHHcCCCeEEEeCCC
Confidence 554444 58888888999999998743
No 410
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=30.72 E-value=2.2e+02 Score=21.43 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCEEEEeCCc-hHHHHHHHhhhc---CCcc-ccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 96 ANRLIKHLSCHGVPMALASNSH-RATIESKISYQH---GWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~-~~~~~~~l~~~~---~l~~-~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
-..+|+.+.+.|.++.+-|+.. ...+...+ +.+ +-.. .+=..++........-+-..+..+.++++++ +-
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av-~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~----vG 176 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGMSTLEEIERAV-EVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVP----VG 176 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT--HHHHHHHH-HHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSE----EE
T ss_pred CHHHHHHHHHhCCcEEEECCCCCHHHHHHHH-HHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCC----EE
Confidence 3578999999999988887774 33344444 333 2211 1111223333333344456677777888853 68
Q ss_pred EeCchhhhh---hhhhcCCEE
Q 026853 171 IEDSVIGVV---AGKAAGMEV 188 (232)
Q Consensus 171 vgD~~~Di~---~a~~~G~~~ 188 (232)
+.|...++. +|-.+|...
T Consensus 177 ~SDHt~g~~~~~~AvalGA~v 197 (241)
T PF03102_consen 177 YSDHTDGIEAPIAAVALGARV 197 (241)
T ss_dssp EEE-SSSSHHHHHHHHTT-SE
T ss_pred eCCCCCCcHHHHHHHHcCCeE
Confidence 888875543 355667543
No 411
>PRK10812 putative DNAse; Provisional
Probab=30.70 E-value=2.4e+02 Score=21.46 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
.+..+++++.++.|+...+..+.......+.+
T Consensus 20 ~d~~~vl~~a~~~gv~~~~~~~~~~~~~~~~~ 51 (265)
T PRK10812 20 KDVDDVLAKAAARDVKFCLAVATTLPGYRHMR 51 (265)
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 45667788888888766666555544444333
No 412
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=30.65 E-value=1.1e+02 Score=18.31 Aligned_cols=44 Identities=11% Similarity=0.023 Sum_probs=23.9
Q ss_pred HHHHcCCCccHHhHHHHHHHHHHhhhccCCCCCcHHHHHHHHHhCCC
Q 026853 62 IVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGV 108 (232)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~ 108 (232)
+.+.+.-..+..++...+.+.+.. .-...+++..+|..|.++|+
T Consensus 36 Iw~lldg~~tv~eI~~~L~~~Y~~---~e~~~~dV~~fL~~L~~~gl 79 (81)
T TIGR03859 36 ILELCDGKRSLAEIIQELAQRFPA---AEEIEDDVIAFLAVARAKHW 79 (81)
T ss_pred HHHHccCCCcHHHHHHHHHHHcCC---hhhHHHHHHHHHHHHHHCcC
Confidence 334443333445555554444432 12345677888888887764
No 413
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=30.26 E-value=1.6e+02 Score=24.05 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=53.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEE
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 170 (232)
.-.|++..++..+++- +++++.|..........+ +.++=.+.|........+ .-+.+. |..-+...+.+.+.++.
T Consensus 252 ~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~-d~l~~~k~~~~~lfr~sc--~~~~G~-~ikDis~i~r~l~~vii 326 (390)
T COG5190 252 SKRPELDYFLGKLSKI-HELVYFTASVKRYADPVL-DILDSDKVFSHRLFRESC--VSYLGV-YIKDISKIGRSLDKVII 326 (390)
T ss_pred cCChHHHHHHhhhhhh-EEEEEEecchhhhcchHH-Hhccccceeehhhhcccc--eeccCc-hhhhHHhhccCCCceEE
Confidence 4568888998888877 899999999777777655 555433333322222221 223334 44456667788899999
Q ss_pred EeCchh
Q 026853 171 IEDSVI 176 (232)
Q Consensus 171 vgD~~~ 176 (232)
+..++.
T Consensus 327 Id~~p~ 332 (390)
T COG5190 327 IDNSPA 332 (390)
T ss_pred eeCChh
Confidence 999994
No 414
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=30.13 E-value=63 Score=21.05 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHH
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATI 121 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~ 121 (232)
+.+.+.++.++++|.+++++|+......
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~l 101 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSPL 101 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChh
Confidence 4577888999999999999999866543
No 415
>PLN02423 phosphomannomutase
Probab=29.94 E-value=95 Score=23.23 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
+.+...+.+++|++. +.+++.|++........+
T Consensus 25 i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~ 57 (245)
T PLN02423 25 ATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQL 57 (245)
T ss_pred CCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHh
Confidence 345667888899876 999999999776655444
No 416
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=29.84 E-value=1.1e+02 Score=21.17 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=29.8
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccc
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE 143 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 143 (232)
..++.++=+.|++.|.++.++.+.....+.... +..++ +.+++..+
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~-~~~~~----~~V~~~~~ 97 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDPEEVLPELA-KEYGA----TAVYFNEE 97 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHH-HHHTE----SEEEEE--
T ss_pred HHHHHHHHHHHHhcCcceEEEecchHHHHHHHH-HhcCc----CeeEeccc
Confidence 345567777888889999999988777776666 65553 44444433
No 417
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=29.79 E-value=2.8e+02 Score=21.84 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=52.5
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcC-Cccccceeecccc-cCCCCC---CHHHHHHHHHhcC-CCCCcE
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-WNESFSVIVGSDE-VRTGKP---SPDIFLEAAKRLN-MEPSSS 168 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~-l~~~~~~~~~~~~-~~~~kp---~~~~~~~~~~~~~-~~~~~~ 168 (232)
.++++|...++.|+-+..+.-...+.+...+ +... ... ..++.... ....-+ -......++++.. ++ =+
T Consensus 4 ~~k~lL~~A~~~~yaV~AfN~~n~e~~~avi-~AAe~~~s--PvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VP--Va 78 (307)
T PRK05835 4 KGNEILLKAHKEGYGVGAFNFVNFEMLNAIF-EAGNEENS--PLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIP--VA 78 (307)
T ss_pred CHHHHHHHHHHCCceEEEEEECCHHHHHHHH-HHHHHHCC--CEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCe--EE
Confidence 3577888888888888888777777776666 3221 111 11111111 000111 1123333444443 43 24
Q ss_pred EEEeCch--hhhhhhhhcCCEEEEeCCCC
Q 026853 169 LVIEDSV--IGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 169 ~~vgD~~--~Di~~a~~~G~~~i~v~~~~ 195 (232)
+..+-+. ..+..|-.+|+.++++...+
T Consensus 79 lHLDHg~~~e~i~~ai~~GftSVM~DgS~ 107 (307)
T PRK05835 79 LHLDHGTTFESCEKAVKAGFTSVMIDASH 107 (307)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence 5555543 67788888899999988743
No 418
>PHA03050 glutaredoxin; Provisional
Probab=29.76 E-value=1.5e+02 Score=18.89 Aligned_cols=83 Identities=2% Similarity=0.067 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCCEEEEeCCchHHH---HHHHhhhcCCcc-ccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEe
Q 026853 97 NRLIKHLSCHGVPMALASNSHRATI---ESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~~~~~~---~~~l~~~~~l~~-~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vg 172 (232)
.++++.+... .++.++|-..-.+. ...| +..++.. .|..+ ++....+.++....+.+.-|...=-.+|||
T Consensus 3 ~~~v~~~i~~-~~V~vys~~~CPyC~~ak~~L-~~~~i~~~~~~~i----~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~ 76 (108)
T PHA03050 3 EEFVQQRLAN-NKVTIFVKFTCPFCRNALDIL-NKFSFKRGAYEIV----DIKEFKPENELRDYFEQITGGRTVPRIFFG 76 (108)
T ss_pred HHHHHHHhcc-CCEEEEECCCChHHHHHHHHH-HHcCCCcCCcEEE----ECCCCCCCHHHHHHHHHHcCCCCcCEEEEC
Confidence 4566666555 46888887755543 3444 5555532 12222 112223344555555555554433467888
Q ss_pred Cch----hhhhhhhhcC
Q 026853 173 DSV----IGVVAGKAAG 185 (232)
Q Consensus 173 D~~----~Di~~a~~~G 185 (232)
+.. .|+..+...|
T Consensus 77 g~~iGG~ddl~~l~~~g 93 (108)
T PHA03050 77 KTSIGGYSDLLEIDNMD 93 (108)
T ss_pred CEEEeChHHHHHHHHcC
Confidence 754 5777776666
No 419
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=29.50 E-value=1.8e+02 Score=19.61 Aligned_cols=27 Identities=7% Similarity=0.177 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHhcCCCCCcEEEEeC
Q 026853 147 GKPSPDIFLEAAKRLNMEPSSSLVIED 173 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~~~~~vgD 173 (232)
..+..+.++..+...|++.+.++.-..
T Consensus 52 ~~~ea~~~~~~l~~~gvp~~~I~~e~~ 78 (155)
T PF02698_consen 52 GRSEAEAMRDYLIELGVPEERIILEPK 78 (155)
T ss_dssp TS-HHHHHHHHHHHT---GGGEEEE--
T ss_pred CCCHHHHHHHHHHhcccchheeEccCC
Confidence 455566666666666776665555433
No 420
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=29.47 E-value=57 Score=24.74 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCCCCcEEEEeCc------hhhhhhhhhcCCEEEEeCCCCCccccchhhhHhhhhccCcCcccc
Q 026853 153 IFLEAAKRLNMEPSSSLVIEDS------VIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~vgD~------~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~ 219 (232)
.=..++++++++ +++-=|| ..=+.+|+++|++++++.++.. ..+..++.+++|+...+.
T Consensus 188 ~n~al~~~~~i~---~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~-----~~~~~~~~~~~el~~~l~ 252 (256)
T TIGR00715 188 LEKALLREYRID---AVVTKASGEQGGELEKVKAAEALGINVIRIARPQT-----IPGVAIFDDISQLNQFVA 252 (256)
T ss_pred HHHHHHHHcCCC---EEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC-----CCCCccCCCHHHHHHHHH
Confidence 334566777765 4444333 3678999999999999988321 122345566666665554
No 421
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=29.40 E-value=2.9e+02 Score=22.84 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=7.3
Q ss_pred cHHHHHHHHHhCCCCE
Q 026853 95 GANRLIKHLSCHGVPM 110 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~ 110 (232)
...++.+.+.+.++++
T Consensus 131 ~~~ea~~~~~~~~~Pv 146 (426)
T PRK13789 131 EYSSSLSYLESEMLPI 146 (426)
T ss_pred CHHHHHHHHHhcCCCE
Confidence 3344444444445554
No 422
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=29.38 E-value=2.5e+02 Score=21.15 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCEEEEeCCch--HHHHHHHhh-hcCCccccceeecccccCCCCCCH-------HHHHHHHHhcCCCCC
Q 026853 97 NRLIKHLSCHGVPMALASNSHR--ATIESKISY-QHGWNESFSVIVGSDEVRTGKPSP-------DIFLEAAKRLNMEPS 166 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~-~~~l~~~~~~~~~~~~~~~~kp~~-------~~~~~~~~~~~~~~~ 166 (232)
.+.|+.|.+.|..++|..+... ..++..+ . .++.+.....++ ....|+. +-+..-.++-++...
T Consensus 149 ~e~l~~la~~~aTm~I~L~v~~I~~vv~~L~-~g~y~~dtPVaVV~-----rAsWpDe~ii~GTL~dIa~kv~~~~i~rT 222 (254)
T COG2875 149 KESLAALAKHGATMVIFLGVHAIDKVVEELL-EGGYPPDTPVAVVY-----RASWPDEKIIRGTLEDIAEKVKEAGIRRT 222 (254)
T ss_pred hhHHHHHHhcCceeEeeehhhHHHHHHHHHh-cCCCCCCCCEEEEE-----ecCCCcccEEEeeHHHHHHHHHhcCceeE
Confidence 4567777777777777776532 2233233 2 333333333222 1122332 234444456688888
Q ss_pred cEEEEeCchh
Q 026853 167 SSLVIEDSVI 176 (232)
Q Consensus 167 ~~~~vgD~~~ 176 (232)
..++|||..+
T Consensus 223 AlIiVG~~l~ 232 (254)
T COG2875 223 ALIIVGDVLD 232 (254)
T ss_pred EEEEEccccC
Confidence 8999999874
No 423
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=29.35 E-value=2e+02 Score=27.60 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCCEEEEeCCch--HHHHHHHhhhcCCc-cccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeC
Q 026853 97 NRLIKHLSCHGVPMALASNSHR--ATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD 173 (232)
.-+|++|+..|+++.|+|.... +..+.+| .+.|.. -.+|. ...-+.-+.+++++|.++.=.+||=.
T Consensus 1266 AiLLqQLk~eghRvLIfTQMtkmLDVLeqFL-nyHgylY~RLDg----------~t~vEqRQaLmerFNaD~RIfcfILS 1334 (1958)
T KOG0391|consen 1266 AILLQQLKSEGHRVLIFTQMTKMLDVLEQFL-NYHGYLYVRLDG----------NTSVEQRQALMERFNADRRIFCFILS 1334 (1958)
T ss_pred HHHHHHHHhcCceEEehhHHHHHHHHHHHHH-hhcceEEEEecC----------CccHHHHHHHHHHhcCCCceEEEEEe
Confidence 3457889999999999997743 2244444 443320 01111 11224455666777766655556655
Q ss_pred chhhhhhhhhcCCEEEEeCC
Q 026853 174 SVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 174 ~~~Di~~a~~~G~~~i~v~~ 193 (232)
+.+.=.+..-.|..+|.+-.
T Consensus 1335 TrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1335 TRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred ccCCccccccccCceEEEec
Confidence 55555555555665555544
No 424
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.15 E-value=2e+02 Score=20.09 Aligned_cols=73 Identities=8% Similarity=0.012 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCCEEEEeCCchHH--HHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeC
Q 026853 96 ANRLIKHLSCHGVPMALASNSHRAT--IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (232)
Q Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~~--~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD 173 (232)
+..+++.+.+.+.+++++-+..... +...+.+++. ...+.+...+.. ++.-...+++..+-...+++++|=
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP-----~l~ivg~~~g~f--~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYP-----GLRIVGYHHGYF--DEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCC-----CeEEEEecCCCC--ChhhHHHHHHHHHHcCCCEEEEEC
Confidence 3456666666777777777664432 2222312211 111111111111 334455555555555556777776
Q ss_pred ch
Q 026853 174 SV 175 (232)
Q Consensus 174 ~~ 175 (232)
+.
T Consensus 110 G~ 111 (172)
T PF03808_consen 110 GA 111 (172)
T ss_pred CC
Confidence 65
No 425
>PRK14129 heat shock protein HspQ; Provisional
Probab=29.14 E-value=57 Score=20.74 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=15.1
Q ss_pred ccccEEEEeCCCcccccHHH
Q 026853 7 KLMSCVILDLDGTLLNTDGM 26 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~ 26 (232)
-.++.|+||+|-+.-.+...
T Consensus 17 ~~yrGVV~DVDP~fs~~e~w 36 (105)
T PRK14129 17 LGYLGVVVDIDPEYSLEEPS 36 (105)
T ss_pred cCCCeEEEeeCCCcCCCchh
Confidence 35789999999887766543
No 426
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=29.02 E-value=2.4e+02 Score=20.79 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=46.2
Q ss_pred CCCEEEEeCCchHHH--HHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEE---eCchhhhhhh
Q 026853 107 GVPMALASNSHRATI--ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI---EDSVIGVVAG 181 (232)
Q Consensus 107 g~~~~i~s~~~~~~~--~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~v---gD~~~Di~~a 181 (232)
|.++++++.+++.+. ...+...+ + .++ -.--|.+..++.++.++|++.+++.++ |...+++...
T Consensus 68 g~~v~VLasGDP~f~G~g~~l~~~~------~----~~~-v~iIPgiSS~q~a~ARlg~~~~~~~~islHgr~~~~l~~~ 136 (210)
T COG2241 68 GRDVVVLASGDPLFSGVGRLLRRKF------S----CEE-VEIIPGISSVQLAAARLGWPLQDTEVISLHGRPVELLRPL 136 (210)
T ss_pred CCCeEEEecCCcchhhhHHHHHHhc------C----ccc-eEEecChhHHHHHHHHhCCChHHeEEEEecCCCHHHHHHH
Confidence 678888877766542 22221111 1 111 123467789999999999999886654 4455777777
Q ss_pred hhcCCEEEEeCC
Q 026853 182 KAAGMEVVAVPS 193 (232)
Q Consensus 182 ~~~G~~~i~v~~ 193 (232)
..-|-..+....
T Consensus 137 ~~~~~~~vil~~ 148 (210)
T COG2241 137 LENGRRLVILTP 148 (210)
T ss_pred HhCCceEEEeCC
Confidence 755655555544
No 427
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.95 E-value=67 Score=18.94 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEe
Q 026853 92 ALPGANRLIKHLSCHGVPMALAS 114 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s 114 (232)
-.+.+.+.++.++++|.+++.+|
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 59 RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEe
Confidence 34678889999999999999888
No 428
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=28.89 E-value=95 Score=17.45 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.2
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCc
Q 026853 95 GANRLIKHLSCHGVPMALASNSH 117 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~ 117 (232)
...++++++++.|+..+.+|+..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 36789999999999999999885
No 429
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=28.74 E-value=2.3e+02 Score=20.63 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCCEEEEeCCchH--HHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCC--CcEEEE
Q 026853 96 ANRLIKHLSCHGVPMALASNSHRA--TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP--SSSLVI 171 (232)
Q Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~--~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~--~~~~~v 171 (232)
+..+++.|++. +++++++|.-.. ..++.. +..|. ..-.+.++..++ -+..+..++++++.... -+.++|
T Consensus 30 ie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~-~~~g~--~i~~v~TG~~CH---~da~m~~~ai~~l~~~~~~~Dll~i 102 (202)
T COG0378 30 IEKTLRALKDE-YKIAVITGDIYTKEDADRLR-KLPGE--PIIGVETGKGCH---LDASMNLEAIEELVLDFPDLDLLFI 102 (202)
T ss_pred HHHHHHHHHhh-CCeEEEeceeechhhHHHHH-hCCCC--eeEEeccCCccC---CcHHHHHHHHHHHhhcCCcCCEEEE
Confidence 34567778877 999999998544 233222 22232 223333332332 45677788888776533 488998
Q ss_pred eCchh
Q 026853 172 EDSVI 176 (232)
Q Consensus 172 gD~~~ 176 (232)
...-|
T Consensus 103 Es~GN 107 (202)
T COG0378 103 ESVGN 107 (202)
T ss_pred ecCcc
Confidence 88773
No 430
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=28.66 E-value=63 Score=17.06 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=17.1
Q ss_pred cEEEEeCCCcccccHHHHHHHHHHHHHHcCC
Q 026853 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGK 40 (232)
Q Consensus 10 k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~ 40 (232)
.+..+|.+|+++... ....++.+.+++
T Consensus 3 ~V~~~d~~~~~i~~f----~S~~eAa~~lg~ 29 (53)
T smart00497 3 PVYVYDLDGNLIGEF----SSIREAAKYLGI 29 (53)
T ss_pred cEEEEeCCCCEEEEe----cCHHHHHHHhCC
Confidence 467889999988542 334445555554
No 431
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=28.64 E-value=80 Score=25.14 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=24.9
Q ss_pred cCCCCCcHHHHHHHHHhCCCCEEEEeCCc
Q 026853 89 KVKALPGANRLIKHLSCHGVPMALASNSH 117 (232)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~ 117 (232)
+..+.+++.++++.+++.|+.+.+.||+.
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 44567899999999999999999999985
No 432
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=28.59 E-value=2.6e+02 Score=21.17 Aligned_cols=93 Identities=10% Similarity=0.111 Sum_probs=51.8
Q ss_pred HHHHHHhCCCCEEEEeCCchHHHH-----HHHhhhcCCcc-ccceeeccccc------CCCCCCHHHHHHHHHhcCCCCC
Q 026853 99 LIKHLSCHGVPMALASNSHRATIE-----SKISYQHGWNE-SFSVIVGSDEV------RTGKPSPDIFLEAAKRLNMEPS 166 (232)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~-----~~l~~~~~l~~-~~~~~~~~~~~------~~~kp~~~~~~~~~~~~~~~~~ 166 (232)
..+.+++ |-+++++-.+..-..- ... ..+|.+. .+..++.+... .....+++.....+...++.+.
T Consensus 42 ~~~~l~~-ggrl~~~GaGtSg~la~~da~e~~-~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l~~~ 119 (257)
T cd05007 42 AAERLRA-GGRLIYVGAGTSGRLGVLDASELP-PTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLTER 119 (257)
T ss_pred HHHHHHc-CCEEEEEcCcHHHHHHHHHHHhcc-ccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCCCCC
Confidence 3444544 4467777666543322 222 3445422 33344433221 2233455667777777888777
Q ss_pred cEEE-EeCc---h---hhhhhhhhcCCEEEEeCC
Q 026853 167 SSLV-IEDS---V---IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 167 ~~~~-vgD~---~---~Di~~a~~~G~~~i~v~~ 193 (232)
+++. |.-| + .-++.|++.|..++.+..
T Consensus 120 DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~ 153 (257)
T cd05007 120 DVVIGIAASGRTPYVLGALRYARARGALTIGIAC 153 (257)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 7663 3322 2 346678999999999987
No 433
>TIGR00664 DNA_III_psi DNA polymerase III, psi subunit. This small subunit of the DNA polymerase III holoenzyme in E. coli and related species appearsto have a narrow taxonomic distribution. It is not found so far outside the gamma subdivision proteobacteria.
Probab=28.54 E-value=1.1e+02 Score=20.62 Aligned_cols=84 Identities=10% Similarity=0.052 Sum_probs=44.0
Q ss_pred HHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhh
Q 026853 102 HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG 181 (232)
Q Consensus 102 ~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a 181 (232)
.|++-|+.-..+.....-.-+ ....+.....-++.+++.. ...++ .+..+++.+++++++++++. +..+.+.
T Consensus 8 lLqeMGItqW~Lr~P~~L~Ge----~~i~Lp~~~rLliVa~~~p-~~~~~-L~~dILrsl~L~~~q~~~lt--~eql~~L 79 (133)
T TIGR00664 8 LLQELGISQWELRRPEALQGE----IAIAIAAHIRLIMVANDEN-ALSDP-LLADVLLALNLKKDNCLCLN--PDKIAHL 79 (133)
T ss_pred HHHHcCCceEEecCcccccCC----cccCCchhceEEEEeCCCC-cccCh-HHHHHHHHcCCCHHHeeeeC--HHHHhhC
Confidence 355566666666554322111 1123444555566555544 22222 58888888888888888774 3444444
Q ss_pred hhcCCEEEEeCC
Q 026853 182 KAAGMEVVAVPS 193 (232)
Q Consensus 182 ~~~G~~~i~v~~ 193 (232)
..-..--+|+.+
T Consensus 80 ~~~~~~~~W~lG 91 (133)
T TIGR00664 80 ECGQHCNSWLLG 91 (133)
T ss_pred CCCCCCeEEEee
Confidence 332223344444
No 434
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=28.25 E-value=2.4e+02 Score=20.54 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=48.1
Q ss_pred CCCCEEEEeCCchHH----HHHHHhhhcCCccccceeecccccCCCCC----CHHHHHHHHHhcCCCCCcEEEEeCchhh
Q 026853 106 HGVPMALASNSHRAT----IESKISYQHGWNESFSVIVGSDEVRTGKP----SPDIFLEAAKRLNMEPSSSLVIEDSVIG 177 (232)
Q Consensus 106 ~g~~~~i~s~~~~~~----~~~~l~~~~~l~~~~~~~~~~~~~~~~kp----~~~~~~~~~~~~~~~~~~~~~vgD~~~D 177 (232)
.+.-.+++|+..... +.+.+ ...++. ||.+.-...-+...+ +...+..+++.+. ..+++-.++|...-
T Consensus 70 ~dtltVLLTGR~e~~F~~lI~~ml-~s~~L~--Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~-~~~eI~IYeDR~~h 145 (197)
T PF10307_consen 70 PDTLTVLLTGRRESKFSSLIERML-ASKGLE--FDAVCLKPENQRFSSTMDFKQAFLEDLLHTYK-NAEEIRIYEDRPKH 145 (197)
T ss_pred CCeeEEEEeCCCchhHHHHHHHHH-hcCCCC--ccEEEeCcccccCccccHHHHHHHHHHHHhcC-CCCEEEEEcCCHHH
Confidence 445567888886433 44444 555663 787764433111111 2345667777777 77999999999999
Q ss_pred hhhhhhc
Q 026853 178 VVAGKAA 184 (232)
Q Consensus 178 i~~a~~~ 184 (232)
+.+++..
T Consensus 146 vk~Fr~F 152 (197)
T PF10307_consen 146 VKGFRDF 152 (197)
T ss_pred HHHHHHH
Confidence 9988763
No 435
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=28.18 E-value=2.9e+02 Score=21.60 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=51.9
Q ss_pred HHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeec-ccccC---CCCCCHHHHHHHHHhcCCCCCcEEEEeC
Q 026853 98 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEVR---TGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (232)
Q Consensus 98 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~-~~~~~---~~kp~~~~~~~~~~~~~~~~~~~~~vgD 173 (232)
++++++++.|..+..... +.+... .+ ...| .|.++. +.+.+ ...+....+.++.+..+++ ++.-|+
T Consensus 100 ~~i~~lk~~g~~v~~~v~-s~~~a~-~a-~~~G----aD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iP---viaaGG 169 (307)
T TIGR03151 100 KYIPRLKENGVKVIPVVA-SVALAK-RM-EKAG----ADAVIAEGMESGGHIGELTTMALVPQVVDAVSIP---VIAAGG 169 (307)
T ss_pred HHHHHHHHcCCEEEEEcC-CHHHHH-HH-HHcC----CCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCC---EEEECC
Confidence 577888887766544332 233332 23 3344 344442 11111 1234556777777777765 777777
Q ss_pred ch--hhhhhhhhcCCEEEEeCCC
Q 026853 174 SV--IGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 174 ~~--~Di~~a~~~G~~~i~v~~~ 194 (232)
-. .|+..+..+|...+++.+.
T Consensus 170 I~~~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 170 IADGRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred CCCHHHHHHHHHcCCCEeecchH
Confidence 65 6888888899999988874
No 436
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.13 E-value=1.5e+02 Score=19.59 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=40.3
Q ss_pred cceeeccc--ccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCch--hhhhhhhh----cCCEEEEeCC
Q 026853 135 FSVIVGSD--EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV--IGVVAGKA----AGMEVVAVPS 193 (232)
Q Consensus 135 ~~~~~~~~--~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~--~Di~~a~~----~G~~~i~v~~ 193 (232)
|..+|+.. .-..+.|.-.....++++.|+...-+=+.|.+. .|++..+. ++.++...++
T Consensus 29 FksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlayCr 95 (130)
T COG3453 29 FKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLAYCR 95 (130)
T ss_pred cceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEeeec
Confidence 34455542 233677888889999999999877777777776 58876543 5666666655
No 437
>PRK06100 DNA polymerase III subunit psi; Provisional
Probab=28.05 E-value=1.7e+02 Score=19.67 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=52.6
Q ss_pred HHHHhCCCCEEEEeCCchHHH-HHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCchhhhh
Q 026853 101 KHLSCHGVPMALASNSHRATI-ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 179 (232)
Q Consensus 101 ~~l~~~g~~~~i~s~~~~~~~-~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~ 179 (232)
..|.+-|+.-..+.+...-.- +. ....+.....-++.+++.. ...++-.+..+++.++++++++.++. +..+.
T Consensus 7 ~~LqqMGItqW~Lr~P~~L~g~e~---~~i~lp~~~rLliV~~~~p-~~~~~~L~~dVLrsm~l~~~q~~~lt--~eq~~ 80 (132)
T PRK06100 7 QYLQEMGISQWELIHPERLAGYQP---PTQDLDSDCKLLLVAPQCP-QNETALLFERILKSMQLELSQARHIE--PEQLS 80 (132)
T ss_pred HHHHHcCCceEEecCCccccCccc---ccccCCccceEEEEcCCCC-CccchHHHHHHHHHcCCCHHHeeeeC--HHHHh
Confidence 346666777777765542211 10 1123445555566665533 23334489999999999999999874 45556
Q ss_pred hhhhcCCEEEEeCC
Q 026853 180 AGKAAGMEVVAVPS 193 (232)
Q Consensus 180 ~a~~~G~~~i~v~~ 193 (232)
+...-+...+|..+
T Consensus 81 ~L~~~~~~~~W~lg 94 (132)
T PRK06100 81 QLGYHSLEWVWFAG 94 (132)
T ss_pred hCCcCCCCeEEECC
Confidence 66666666677766
No 438
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=27.91 E-value=3.1e+02 Score=21.76 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=55.7
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcC-Cccccceeec-c-cccCC-C----CCCHHHHHHHHHhcCCCC
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-WNESFSVIVG-S-DEVRT-G----KPSPDIFLEAAKRLNMEP 165 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~-l~~~~~~~~~-~-~~~~~-~----kp~~~~~~~~~~~~~~~~ 165 (232)
-.++++|...++.|+-+..+.-...+.++..+ +... ... ..++. + ..... + ..-...+...+++.+++.
T Consensus 10 v~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi-~AAee~~s--PvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~V 86 (321)
T PRK07084 10 VNTREMFAKAVKGGYAIPAYNFNNMEQLQAII-QACVETKS--PVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPI 86 (321)
T ss_pred cCHHHHHHHHHHCCceEEEEEeCCHHHHHHHH-HHHHHhCC--CEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCC
Confidence 45778888888888888888888777777666 3222 111 11111 1 11111 1 001112234455554333
Q ss_pred CcEEEEeCc--hhhhhhhhhcCCEEEEeCCCC
Q 026853 166 SSSLVIEDS--VIGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 166 ~~~~~vgD~--~~Di~~a~~~G~~~i~v~~~~ 195 (232)
.=+++.+-+ ...+..|-.+|+.++++...+
T Consensus 87 PV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~ 118 (321)
T PRK07084 87 PIVLHLDHGDSFELCKDCIDSGFSSVMIDGSH 118 (321)
T ss_pred cEEEECCCCCCHHHHHHHHHcCCCEEEeeCCC
Confidence 334555444 468888888999999998743
No 439
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=27.39 E-value=2.3e+02 Score=22.49 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=41.8
Q ss_pred hhcCCccccceeecccccCCCC---CC----HHHHHHHHHhcCCCCC--cEEEEeCchhhh----hhhhhcCCEEEEeCC
Q 026853 127 YQHGWNESFSVIVGSDEVRTGK---PS----PDIFLEAAKRLNMEPS--SSLVIEDSVIGV----VAGKAAGMEVVAVPS 193 (232)
Q Consensus 127 ~~~~l~~~~~~~~~~~~~~~~k---p~----~~~~~~~~~~~~~~~~--~~~~vgD~~~Di----~~a~~~G~~~i~v~~ 193 (232)
..-.|..+||.+..-.-.+... .. .++.++++++.|++++ +.+++||..+-. ..++.+|++...+..
T Consensus 24 ~~gpl~~~fd~~~~d~~~g~ks~EkAe~eLa~eAa~~ALekAGL~~~DID~IIvGdl~~Q~~~As~vA~~LGIP~fdV~~ 103 (327)
T TIGR02845 24 GEGPLGDYFDKIYDDLYCGEDSWEKAERKLMEDAVNLALKKANLKKDDVDFFLAGDLLNQIITANFVARDLGIPFLGLYG 103 (327)
T ss_pred ccCCChhhCCEEEeccccCCcCcchhHHHHHHHHHHHHHHHcCCCHHHCCEEEEeCCCCcccHHHHHHHHhCCCEEEEec
Confidence 3345788899877444333222 11 2456777888899887 578899865311 255778877666555
No 440
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=27.35 E-value=67 Score=19.52 Aligned_cols=18 Identities=6% Similarity=0.353 Sum_probs=16.2
Q ss_pred HHHhcCCCCCcEEEEeCc
Q 026853 157 AAKRLNMEPSSSLVIEDS 174 (232)
Q Consensus 157 ~~~~~~~~~~~~~~vgD~ 174 (232)
.++.+|+.|+++++|-|.
T Consensus 64 TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 64 TLQEAGLCPQETVFVQER 81 (82)
T ss_pred CHHHcCCCCCcEEEEecC
Confidence 588999999999999885
No 441
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.34 E-value=1.9e+02 Score=19.33 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=9.3
Q ss_pred HHHHHHHHhCCCCEEEEeCC
Q 026853 97 NRLIKHLSCHGVPMALASNS 116 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~ 116 (232)
.++++...+.+..++++|..
T Consensus 43 e~~v~aa~e~~adii~iSsl 62 (132)
T TIGR00640 43 EEIARQAVEADVHVVGVSSL 62 (132)
T ss_pred HHHHHHHHHcCCCEEEEcCc
Confidence 34444444444444444443
No 442
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=27.26 E-value=1.7e+02 Score=18.42 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=26.0
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
.+.-|..+.+..++.....++++++...+.....+
T Consensus 16 kl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i 50 (99)
T PRK01018 16 KVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDI 50 (99)
T ss_pred CEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHH
Confidence 56778888899988877788888877655555444
No 443
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=27.23 E-value=2.6e+02 Score=20.59 Aligned_cols=47 Identities=19% Similarity=0.078 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHhcCC-CCCcEEEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 146 TGKPSPDIFLEAAKRLNM-EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~-~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
..+|++...+ ....+.. +..+++.+|-+. .|...+...|+.+++|.-
T Consensus 19 ~~~p~~~L~~-~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~ 67 (218)
T PRK13255 19 QEEVNPLLQK-YWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVEL 67 (218)
T ss_pred CCCCCHHHHH-HHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEcc
Confidence 3567765555 3433444 346899999999 788888889999999976
No 444
>PRK06801 hypothetical protein; Provisional
Probab=27.22 E-value=3e+02 Score=21.38 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=53.8
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecc-cccCCCCC---CHHHHHHHHHhcCCCCCcEE
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS-DEVRTGKP---SPDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~~~~kp---~~~~~~~~~~~~~~~~~~~~ 169 (232)
-.++++|...++.|+-+..+.-...+.+...+ +-..-.. -..++.. .......+ -......++++..++ =++
T Consensus 4 v~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi-~AAe~~~-~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vp--V~l 79 (286)
T PRK06801 4 ISLANGLAHARKHGYALGAFNVLDSHFLRALF-AAAKQER-SPFIINIAEVHFKYISLESLVEAVKFEAARHDIP--VVL 79 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEeeCCHHHHHHHH-HHHHHHC-CCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 34678888888888888888877777776666 3221100 1111111 11111111 123445555666664 244
Q ss_pred EEeCch--hhhhhhhhcCCEEEEeCC
Q 026853 170 VIEDSV--IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 170 ~vgD~~--~Di~~a~~~G~~~i~v~~ 193 (232)
..+-+. ..+..|-.+|+.++++..
T Consensus 80 HlDH~~~~e~i~~Ai~~GftSVm~D~ 105 (286)
T PRK06801 80 NLDHGLHFEAVVRALRLGFSSVMFDG 105 (286)
T ss_pred ECCCCCCHHHHHHHHHhCCcEEEEcC
Confidence 444443 577778888988888866
No 445
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=27.02 E-value=2.1e+02 Score=19.63 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=41.3
Q ss_pred CCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHH---HHHHHhcCC--CCCcEEEEeCchhhhhh
Q 026853 106 HGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF---LEAAKRLNM--EPSSSLVIEDSVIGVVA 180 (232)
Q Consensus 106 ~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~---~~~~~~~~~--~~~~~~~vgD~~~Di~~ 180 (232)
.+.++.++++.+.......+ ....... +.++....-+..+-.-..+ +.++++.+. ....+++|-|...-+..
T Consensus 48 ~~~~i~~~~~~D~~~~~~~~-~~~~~~~--tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l~~ 124 (158)
T cd05015 48 GGLRLHFVSNVDPDDLAELL-KKLDPET--TLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDNGSGLLK 124 (158)
T ss_pred CCceEEEEeCCCHHHHHHHH-HhCCccc--EEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEEEEcCCChHHHH
Confidence 35667788887777655555 4433222 2222221112122111222 333333332 45578889886665555
Q ss_pred -hhhcCCEEEEeCC
Q 026853 181 -GKAAGMEVVAVPS 193 (232)
Q Consensus 181 -a~~~G~~~i~v~~ 193 (232)
+...+..+..+..
T Consensus 125 ~a~~~~~~~~~~~~ 138 (158)
T cd05015 125 KAGIEGLNTFEIPD 138 (158)
T ss_pred HcCCCcceeeeCCC
Confidence 5555655555443
No 446
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=26.94 E-value=2.6e+02 Score=20.53 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHhcCCCCCcEEEEeCch--hhhhhhhhcC-CEEEEeCC
Q 026853 149 PSPDIFLEAAKRLNMEPSSSLVIEDSV--IGVVAGKAAG-MEVVAVPS 193 (232)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~~~vgD~~--~Di~~a~~~G-~~~i~v~~ 193 (232)
++.+.++++.+..+++ +++-|+-. .|+..+.+.| +..+.+.+
T Consensus 177 ~d~~~i~~l~~~~~ip---via~GGi~~~~di~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 177 PNVEATRELAAAVPIP---VIASGGVSSLDDIKALKGLGAVEGVIVGR 221 (233)
T ss_pred CCHHHHHHHHHhCCCC---EEEeCCCCCHHHHHHHHHcCCccEEEEEH
Confidence 7778889988877644 78888554 6999999988 99999887
No 447
>PRK13937 phosphoheptose isomerase; Provisional
Probab=26.86 E-value=82 Score=22.44 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATI 121 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~ 121 (232)
-.+.+.+.++.++++|.+++.+|+......
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L 147 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGKM 147 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 457788899999999999999999765543
No 448
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.61 E-value=3.7e+02 Score=22.22 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=31.8
Q ss_pred cceeecccccCCCCCCHHHHHHHHHhcC-CCCCcEEEEeCchhhhhh
Q 026853 135 FSVIVGSDEVRTGKPSPDIFLEAAKRLN-MEPSSSLVIEDSVIGVVA 180 (232)
Q Consensus 135 ~~~~~~~~~~~~~kp~~~~~~~~~~~~~-~~~~~~~~vgD~~~Di~~ 180 (232)
||.+ ..+..+..+...+.+++..+--+ +.|+++++|=|+.-.-.+
T Consensus 184 fdvI-IvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa 229 (483)
T KOG0780|consen 184 FDVI-IVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA 229 (483)
T ss_pred CcEE-EEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH
Confidence 4543 34556777778888888876544 689999999998754433
No 449
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=26.59 E-value=79 Score=20.40 Aligned_cols=26 Identities=4% Similarity=0.046 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCc
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSH 117 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~ 117 (232)
-.+++.+.++.++++|.+++.+|+..
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 44677888889999999999999654
No 450
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=26.37 E-value=83 Score=18.35 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=21.4
Q ss_pred cCCCCCCHHHHHHHHHhcCCCCCcEEEE
Q 026853 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (232)
Q Consensus 144 ~~~~kp~~~~~~~~~~~~~~~~~~~~~v 171 (232)
+..+.+-.+++..++++.|+.++.+..+
T Consensus 17 vrpg~ti~d~L~~~~~kr~L~~~~~~V~ 44 (71)
T PF02196_consen 17 VRPGMTIRDALSKACKKRGLNPECCDVR 44 (71)
T ss_dssp E-TTSBHHHHHHHHHHTTT--CCCEEEE
T ss_pred EcCCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 3456777899999999999999998877
No 451
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=26.32 E-value=3.1e+02 Score=21.18 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=12.9
Q ss_pred cHHHHHHHHHhCCCC-EEEEeC
Q 026853 95 GANRLIKHLSCHGVP-MALASN 115 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~-~~i~s~ 115 (232)
+.....+.|.+.|++ ++++++
T Consensus 166 ~~~~a~~~L~~~G~r~I~~i~~ 187 (328)
T PRK11303 166 DAEMLAESLLKFPAESILLLGA 187 (328)
T ss_pred HHHHHHHHHHHCCCCeEEEEeC
Confidence 446666777777655 555554
No 452
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=26.28 E-value=2.2e+02 Score=19.69 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHhcCC---CCCcEEEEeCchh-h-----------------hhhhhhcCCEEEEeCCCCC
Q 026853 147 GKPSPDIFLEAAKRLNM---EPSSSLVIEDSVI-G-----------------VVAGKAAGMEVVAVPSLPK 196 (232)
Q Consensus 147 ~kp~~~~~~~~~~~~~~---~~~~~~~vgD~~~-D-----------------i~~a~~~G~~~i~v~~~~~ 196 (232)
..+...++..+.+.+.- .+.-++.+.|+.+ + +..++..|+..+.+.-|..
T Consensus 83 ~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~ 153 (174)
T cd01454 83 NTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRD 153 (174)
T ss_pred CCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCc
Confidence 35666777777776652 3445788999984 2 4556778888766655443
No 453
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=26.17 E-value=2.7e+02 Score=20.53 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=48.5
Q ss_pred eecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEEeCC-CCCc-cccchhhhHh-hhhccC
Q 026853 138 IVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPS-LPKQ-THRYTAADEV-INSLLD 213 (232)
Q Consensus 138 ~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~-~~~~-~~~~~~~~~~-~~~l~e 213 (232)
++.-+...+..|+. .+..++++.+ .+...+|-+=|. .|...|.++|+..|+-.. |+.. ......+|+. ++.+.+
T Consensus 101 IIA~DaT~R~RP~~-~~~~~i~~~k-~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~ 178 (229)
T COG3010 101 IIAFDATDRPRPDG-DLEELIARIK-YPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD 178 (229)
T ss_pred EEEeecccCCCCcc-hHHHHHHHhh-cCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh
Confidence 45556666777876 7777777622 234444444344 799999999999888775 5555 2334455543 355555
Q ss_pred cCcccc
Q 026853 214 LRPEKW 219 (232)
Q Consensus 214 l~~~l~ 219 (232)
.-..+.
T Consensus 179 ~~~~vI 184 (229)
T COG3010 179 AGCRVI 184 (229)
T ss_pred CCCeEE
Confidence 443333
No 454
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=25.79 E-value=3e+02 Score=20.89 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=25.7
Q ss_pred CcEEEEeCchh---hhhhhhhcCCEEEEeCCCCCcccc
Q 026853 166 SSSLVIEDSVI---GVVAGKAAGMEVVAVPSLPKQTHR 200 (232)
Q Consensus 166 ~~~~~vgD~~~---Di~~a~~~G~~~i~v~~~~~~~~~ 200 (232)
-++++|-|-.. -|.-|+.+|+++|.+...++.+..
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~ 194 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDG 194 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCcc
Confidence 35677777664 566688899999999886665554
No 455
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.74 E-value=2.9e+02 Score=20.69 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCch--HHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhc-CCCCCcEEE
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHR--ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NMEPSSSLV 170 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~-~~~~~~~~~ 170 (232)
+...++++.+++.|...+++-+... +.+...+ +.. +.|=.. +....... .-+......++++ ...++..+.
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~-~~~---~~~l~m-sv~~~~g~-~~~~~~~~~i~~lr~~~~~~~i~ 189 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS-KLS---PLFIYY-GLRPATGV-PLPVSVERNIKRVRNLVGNKYLV 189 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-HhC---CCEEEE-EeCCCCCC-CchHHHHHHHHHHHHhcCCCCEE
Confidence 4677889999999988877766633 3344444 321 111111 21111111 1222222222211 122223366
Q ss_pred EeCch---hhhhhhhhcCCEEEEeCC
Q 026853 171 IEDSV---IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 171 vgD~~---~Di~~a~~~G~~~i~v~~ 193 (232)
+|=+. +++..+..+|...+.+.+
T Consensus 190 v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 190 VGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred EeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 66655 688888889998888876
No 456
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=25.73 E-value=75 Score=22.24 Aligned_cols=30 Identities=7% Similarity=0.094 Sum_probs=24.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRAT 120 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~ 120 (232)
--.+.+.+.++.++++|.+++.+|+.....
T Consensus 112 G~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 112 GNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 345788899999999999999999885543
No 457
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=25.68 E-value=84 Score=22.04 Aligned_cols=31 Identities=6% Similarity=0.107 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHHHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 122 (232)
-.+.+.+.++.+++.|.+++.+|+.......
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la 117 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDSPLA 117 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 3467788899999999999999998666543
No 458
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=25.55 E-value=1.2e+02 Score=18.78 Aligned_cols=24 Identities=38% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEeCchhhhhhhhhcCCEEEEeC
Q 026853 168 SLVIEDSVIGVVAGKAAGMEVVAVP 192 (232)
Q Consensus 168 ~~~vgD~~~Di~~a~~~G~~~i~v~ 192 (232)
+.++||. .-+.+++-+|+..+.+.
T Consensus 1 IavIGd~-~~v~gFrLaGv~~~~~~ 24 (95)
T PF01990_consen 1 IAVIGDR-DTVLGFRLAGVEGVYVN 24 (95)
T ss_dssp EEEEE-H-HHHHHHHHTTSEEEEES
T ss_pred CEEEeCH-HHHHHHHHcCCCCccCC
Confidence 4678998 77889999999999997
No 459
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=25.51 E-value=80 Score=23.95 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHhcCCCCCcEEEEeCchhhhhhh----hhcCCEEEEeCCC
Q 026853 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG----KAAGMEVVAVPSL 194 (232)
Q Consensus 148 kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a----~~~G~~~i~v~~~ 194 (232)
..+...+..-+..+|++..++..|||...+|..+ .+- ...+.+++|
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGG 69 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITTGG 69 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCC
Confidence 3456778888899999999999999999877653 333 566666664
No 460
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=25.50 E-value=2.8e+02 Score=20.37 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHhcCCCCCcEEEEeCch--hhhhhhhhcCCEEEEeCC
Q 026853 149 PSPDIFLEAAKRLNMEPSSSLVIEDSV--IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~~~vgD~~--~Di~~a~~~G~~~i~v~~ 193 (232)
++.+.++++.+..+++ +++-|+-. +|+..+.+.|...+.+.+
T Consensus 177 ~~~~~i~~i~~~~~ip---vi~~GGi~~~~di~~~~~~Ga~gv~vg~ 220 (234)
T cd04732 177 PNFELYKELAAATGIP---VIASGGVSSLDDIKALKELGVAGVIVGK 220 (234)
T ss_pred CCHHHHHHHHHhcCCC---EEEecCCCCHHHHHHHHHCCCCEEEEeH
Confidence 6778888888877665 77778655 799999999999999977
No 461
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=25.48 E-value=3.3e+02 Score=21.21 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=54.4
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcC-Cccccceeecccc--cCC-C--CCCHHHHHHHHHhcCCCCCcE
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-WNESFSVIVGSDE--VRT-G--KPSPDIFLEAAKRLNMEPSSS 168 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~-l~~~~~~~~~~~~--~~~-~--kp~~~~~~~~~~~~~~~~~~~ 168 (232)
.++++|...++.|+-+..+.-...+.+...+ +... ... ..++.... ... + ..-...+..++++..++..=+
T Consensus 5 ~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi-~AAee~~s--PvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~ 81 (286)
T PRK08610 5 SMKEMLIDAKENGYAVGQYNLNNLEFTQAIL-EASQEENA--PVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVA 81 (286)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHH-HHHHHHCC--CEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEE
Confidence 4678888888888888877777777766666 2221 111 11111111 110 0 101234445555555322234
Q ss_pred EEEeCc--hhhhhhhhhcCCEEEEeCCCC
Q 026853 169 LVIEDS--VIGVVAGKAAGMEVVAVPSLP 195 (232)
Q Consensus 169 ~~vgD~--~~Di~~a~~~G~~~i~v~~~~ 195 (232)
++.+-+ ..++..|-.+|+.++++...+
T Consensus 82 lHLDHg~~~e~i~~ai~~GftSVM~DgS~ 110 (286)
T PRK08610 82 IHLDHGSSFEKCKEAIDAGFTSVMIDASH 110 (286)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence 555554 367888888999999998743
No 462
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=25.47 E-value=98 Score=17.45 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=10.0
Q ss_pred CCcHHHHHHHHHhCCC
Q 026853 93 LPGANRLIKHLSCHGV 108 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~ 108 (232)
..++.+++..|++.|+
T Consensus 51 ~~dv~~fl~~L~~~gl 66 (68)
T PF05402_consen 51 EEDVEEFLEQLREKGL 66 (68)
T ss_dssp HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHCcC
Confidence 3456677777777653
No 463
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=25.38 E-value=1.1e+02 Score=19.22 Aligned_cols=26 Identities=19% Similarity=-0.004 Sum_probs=20.1
Q ss_pred cEEEEeCchhhhhhhhhcCCEEEEeCC
Q 026853 167 SSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 167 ~~~~vgD~~~Di~~a~~~G~~~i~v~~ 193 (232)
++.++|| ..-+.+++-+|+..+.+..
T Consensus 2 kIaVIGD-~dtv~GFrLaGi~~~~~~~ 27 (100)
T PRK02228 2 EIAVIGS-PEFTTGFRLAGIRKVYEVP 27 (100)
T ss_pred EEEEEeC-HHHHHHHHHcCCceEEeeC
Confidence 4678999 8888899999998665443
No 464
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.19 E-value=1e+02 Score=24.47 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=37.5
Q ss_pred HHHHHhcCCCCCcEEE-EeCc---hhhhhhhhhcCCEEEEeCCCCCcccc---chhhhHhhhhc
Q 026853 155 LEAAKRLNMEPSSSLV-IEDS---VIGVVAGKAAGMEVVAVPSLPKQTHR---YTAADEVINSL 211 (232)
Q Consensus 155 ~~~~~~~~~~~~~~~~-vgD~---~~Di~~a~~~G~~~i~v~~~~~~~~~---~~~~~~~~~~l 211 (232)
-..+++.|+.|.+.+. +|=+ .-.++-|+++|+++..+.+++...+. .-+|++.+.+.
T Consensus 171 YspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 171 YSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred eehhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEec
Confidence 3467788888887664 4433 35889999999999999996533222 23555544444
No 465
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.10 E-value=1.1e+02 Score=22.89 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=20.4
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHH
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRAT 120 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~ 120 (232)
.+.+++.+|++. +.++|||.+....
T Consensus 187 kIEeLi~eLk~~-yTIviVTHnmqQA 211 (253)
T COG1117 187 KIEELITELKKK-YTIVIVTHNMQQA 211 (253)
T ss_pred HHHHHHHHHHhc-cEEEEEeCCHHHH
Confidence 468889999965 9999999987654
No 466
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=24.91 E-value=2.1e+02 Score=18.74 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=27.8
Q ss_pred CcHHHHHHH-HHhCCCCEEEEeCCchHHHHHHHhhhcC
Q 026853 94 PGANRLIKH-LSCHGVPMALASNSHRATIESKISYQHG 130 (232)
Q Consensus 94 ~~~~~~l~~-l~~~g~~~~i~s~~~~~~~~~~l~~~~~ 130 (232)
..+.+.++. +...++-+.++|....+.+...+ +++.
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I-~~~~ 82 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAV-DAHT 82 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHH-HhcC
Confidence 466777887 66678889999999888888888 5444
No 467
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=24.88 E-value=3.8e+02 Score=21.73 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 153 IFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
..+.+.+.++++.+.++.+||-. .=++.|...|+..+.+..
T Consensus 212 ge~~a~~~~~l~~~~~V~~gnfiG~~L~~A~~~g~~~i~l~G 253 (361)
T PRK00075 212 GEDYARKLLGLPEDAIIKMGNFVGPMLKAAARLGVKKVLLVG 253 (361)
T ss_pred HHHHHHHhcCCChhhEEEeehhHHHHHHHHHHcCCCEEEEEe
Confidence 34455556899999999999999 789999999988776654
No 468
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=24.79 E-value=2.3e+02 Score=19.12 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=60.1
Q ss_pred HHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCC-CCHHHHHHHHHhcCCCCCc--EEEEeCc
Q 026853 98 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGK-PSPDIFLEAAKRLNMEPSS--SLVIEDS 174 (232)
Q Consensus 98 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~k-p~~~~~~~~~~~~~~~~~~--~~~vgD~ 174 (232)
++.+..++.|+++.+.+........ +..|. .+.+.++-...+ -+...+..+..+..+...+ ++-|||.
T Consensus 13 ~I~~ga~~~~L~v~F~~PvtdH~~S----D~~G~-----~iLG~e~~~fw~D~k~a~iN~iRT~~li~~aDvVVvrFGek 83 (141)
T PF11071_consen 13 EIKEGAKAAGLPVEFTSPVTDHEAS----DDCGV-----DILGEEPNKFWRDHKGAKINAIRTRTLIEKADVVVVRFGEK 83 (141)
T ss_pred HHHHHHHHcCCCeEEecCCCCchhh----hhhhH-----HHhCCCCccccccchhhhhhHHHHHHHHhhCCEEEEEechH
Confidence 4455566678888777655333221 11110 011111111111 1222333333344444444 4569998
Q ss_pred h------hhhhhhhhcCCEEEEeCCCCCcccc---chhhhHhhhhccCcCcccc
Q 026853 175 V------IGVVAGKAAGMEVVAVPSLPKQTHR---YTAADEVINSLLDLRPEKW 219 (232)
Q Consensus 175 ~------~Di~~a~~~G~~~i~v~~~~~~~~~---~~~~~~~~~~l~el~~~l~ 219 (232)
+ -|-..|..+|-+.|.+........+ ...|..++.+..++.+.|.
T Consensus 84 YKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 84 YKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILR 137 (141)
T ss_pred HHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHH
Confidence 7 2777788899888888774333322 4567777788777766554
No 469
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=24.71 E-value=1.5e+02 Score=22.36 Aligned_cols=40 Identities=18% Similarity=0.407 Sum_probs=31.2
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCC
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l 131 (232)
...||=...-+.|++.|++..++|+.+.......+ +..|+
T Consensus 71 ~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l-~~~g~ 110 (277)
T PRK00994 71 PAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAM-EEQGL 110 (277)
T ss_pred CCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHH-HhcCC
Confidence 44577777888899999999999999877766677 55554
No 470
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=24.38 E-value=99 Score=23.96 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecc--cccCC--CCCCHHHHHHHHHhcCCCCCcEEEE
Q 026853 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS--DEVRT--GKPSPDIFLEAAKRLNMEPSSSLVI 171 (232)
Q Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~--~~~~~--~kp~~~~~~~~~~~~~~~~~~~~~v 171 (232)
++++|...++.|+-+..+.-...+.+...++..-.... ..++.. ..... .+.-......+.++.+++. ++..
T Consensus 5 ~~~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~s--PvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPV--alHL 80 (287)
T PF01116_consen 5 MKELLKKAKEGGYAVPAFNVYNLETARAVIEAAEELNS--PVILQISPSEVKYMGLEYLAAMVKAAAEEASVPV--ALHL 80 (287)
T ss_dssp HHHHHHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS---EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEE--EEEE
T ss_pred HHHHHHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCC--CEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCE--Eeec
Confidence 45667777777777777766666665555521111111 111100 00000 0111123455556666543 3444
Q ss_pred eCc--hhhhhhhhhcCCEEEEeCCC
Q 026853 172 EDS--VIGVVAGKAAGMEVVAVPSL 194 (232)
Q Consensus 172 gD~--~~Di~~a~~~G~~~i~v~~~ 194 (232)
+-+ ..++..|-.+|+.++++...
T Consensus 81 DH~~~~e~i~~ai~~GftSVM~DgS 105 (287)
T PF01116_consen 81 DHGKDFEDIKRAIDAGFTSVMIDGS 105 (287)
T ss_dssp EEE-SHHHHHHHHHHTSSEEEEE-T
T ss_pred ccCCCHHHHHHHHHhCcccccccCC
Confidence 333 36777888888888888773
No 471
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=24.30 E-value=1.6e+02 Score=19.51 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=21.6
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCC
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l 131 (232)
.+.++.+++.+.|+.++.+|..........+ +..++
T Consensus 50 ~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~-~~~~~ 85 (149)
T cd03018 50 ALRDSLELFEAAGAEVLGISVDSPFSLRAWA-EENGL 85 (149)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCHHHHHHHH-HhcCC
Confidence 3345556666667777777776665555555 44443
No 472
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.19 E-value=2.6e+02 Score=19.58 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=13.2
Q ss_pred HHHHHHHHhCCCCEEEEeCCc
Q 026853 97 NRLIKHLSCHGVPMALASNSH 117 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~~ 117 (232)
.++++.+.+++.+++++-+..
T Consensus 36 ~~ll~~~~~~~~~v~llG~~~ 56 (171)
T cd06533 36 PALLELAAQKGLRVFLLGAKP 56 (171)
T ss_pred HHHHHHHHHcCCeEEEECCCH
Confidence 456666666677777774443
No 473
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=24.16 E-value=70 Score=23.15 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=16.6
Q ss_pred HHHHHHhcCCCCCcEEEEeCchhh
Q 026853 154 FLEAAKRLNMEPSSSLVIEDSVIG 177 (232)
Q Consensus 154 ~~~~~~~~~~~~~~~~~vgD~~~D 177 (232)
.+...+.....+.+++++|||...
T Consensus 21 ~~~~~~~~~~~~~~iv~lGDSit~ 44 (214)
T cd01820 21 HERFVAEAKQKEPDVVFIGDSITQ 44 (214)
T ss_pred HHHHHHHhhcCCCCEEEECchHhh
Confidence 344444545667889999999854
No 474
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=24.09 E-value=99 Score=18.45 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=15.2
Q ss_pred EEEEeCCCcccccHHHHHHHH
Q 026853 11 CVILDLDGTLLNTDGMFSEVL 31 (232)
Q Consensus 11 ~i~fDlDGTL~~~~~~~~~~~ 31 (232)
.+++|-||+++..+..+.+.+
T Consensus 4 i~i~d~~g~i~~~N~~~~~~~ 24 (104)
T PF13426_consen 4 IFILDPDGRILYVNPAFERLF 24 (104)
T ss_dssp EEEEETTSBEEEE-HHHHHHH
T ss_pred EEEECCcCcEEehhHHHHHHH
Confidence 578999999998876655433
No 475
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=24.05 E-value=3.2e+02 Score=20.68 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=18.4
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 95 GANRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
...+.+++.++.|+...++.+.........+
T Consensus 20 ~~~~~l~~a~~~gv~~~~~~~~~~~~~~~~~ 50 (258)
T PRK11449 20 DEEASLQRAAQAGVGKIIVPATEAENFARVL 50 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEeeCCHHHHHHHH
Confidence 5667788888887655555444444433333
No 476
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.04 E-value=1.1e+02 Score=18.41 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=20.4
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchH
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRA 119 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~ 119 (232)
....++++.|++.|+.+..+|++...
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~~~ 78 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDELA 78 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCHHH
Confidence 34778899999999998888777543
No 477
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=24.00 E-value=83 Score=21.53 Aligned_cols=29 Identities=7% Similarity=0.025 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRAT 120 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~ 120 (232)
-.+.+.+.++.++++|.+++.+|+.....
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 45678889999999999999999876554
No 478
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=24.00 E-value=4.9e+02 Score=22.71 Aligned_cols=98 Identities=13% Similarity=0.195 Sum_probs=54.5
Q ss_pred CCCCcHHHHHHHHH---hCCCCEEEEeCCchHH------HHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhc
Q 026853 91 KALPGANRLIKHLS---CHGVPMALASNSHRAT------IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (232)
Q Consensus 91 ~~~~~~~~~l~~l~---~~g~~~~i~s~~~~~~------~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~ 161 (232)
...+++.+..+++. .++-+++|+++.+.+- ....| +++|... ....+........-.++..++.+.+.
T Consensus 50 ~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L-~~~g~~~-~~~~IP~R~~eGYGl~~~~i~~~~~~- 126 (575)
T PRK11070 50 QQLSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLAL-RSLGCSN-VDYLVPNRFEDGYGLSPEVVDQAHAR- 126 (575)
T ss_pred HHhhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHH-HHcCCCc-eEEEeCCCCcCCCCCCHHHHHHHHhc-
Confidence 34566666665553 4567899998775332 33344 5555411 22233221111122344667766553
Q ss_pred CCCCCcEEEEeCchhhhhh---hhhcCCEEEEeCC
Q 026853 162 NMEPSSSLVIEDSVIGVVA---GKAAGMEVVAVPS 193 (232)
Q Consensus 162 ~~~~~~~~~vgD~~~Di~~---a~~~G~~~i~v~~ 193 (232)
+ .+=++.++-+.++++. |++.|+.+|....
T Consensus 127 ~--~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDH 159 (575)
T PRK11070 127 G--AQLIVTVDNGISSHAGVAHAHALGIPVLVTDH 159 (575)
T ss_pred C--CCEEEEEcCCcCCHHHHHHHHHCCCCEEEECC
Confidence 3 3446777777766555 5999999887765
No 479
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=23.83 E-value=2e+02 Score=18.19 Aligned_cols=30 Identities=13% Similarity=-0.014 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeCch-hhhhhhh
Q 026853 151 PDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK 182 (232)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~ 182 (232)
...++++++.+ +..+.+.||||. .|.+.-.
T Consensus 52 ~~~i~~i~~~f--P~~kfiLIGDsgq~DpeiY~ 82 (100)
T PF09949_consen 52 RDNIERILRDF--PERKFILIGDSGQHDPEIYA 82 (100)
T ss_pred HHHHHHHHHHC--CCCcEEEEeeCCCcCHHHHH
Confidence 34555555543 345789999998 6876543
No 480
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=23.74 E-value=1.2e+02 Score=17.92 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCch
Q 026853 152 DIFLEAAKRLNMEPSSSLVIEDSV 175 (232)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~vgD~~ 175 (232)
..+..+|+.|...|++++-+.+..
T Consensus 46 ~tL~~iC~~LeCqpgDiley~~d~ 69 (73)
T COG3655 46 STLEKICKALECQPGDILEYVPDS 69 (73)
T ss_pred HHHHHHHHHcCCChhheeEEecCC
Confidence 568899999999999999775544
No 481
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=23.53 E-value=1.9e+02 Score=17.90 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCC
Q 026853 97 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l 131 (232)
..+.+.|.+.|++++.-.....+...+.+ ..+|.
T Consensus 42 ~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~-~~lg~ 75 (89)
T PF08444_consen 42 YHLAQYLHKLGFPFYGHVDEDNEASQRLS-KSLGF 75 (89)
T ss_pred HHHHHHHHHCCCCeEeehHhccHHHHHHH-HHCCC
Confidence 34577888899999998888777777666 66664
No 482
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=23.33 E-value=1.1e+02 Score=16.66 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=15.0
Q ss_pred cccEEEEeCCCcccccHHHHHHHH
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVL 31 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~ 31 (232)
+.-++++| +|+++..+....+.+
T Consensus 11 ~~~i~i~d-~~~i~~~N~~~~~l~ 33 (64)
T PF13188_consen 11 PDGILIID-GGRIIYVNPAFEELF 33 (64)
T ss_dssp SSEEEEEE-TSBEEEE-HHHHHHH
T ss_pred ccceEEEE-CCChHHhhHHHHHHh
Confidence 34578899 998888766544433
No 483
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=23.30 E-value=1.8e+02 Score=19.00 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCC
Q 026853 97 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (232)
Q Consensus 97 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l 131 (232)
.++.+++.+.|+.++.+|..........+ +..++
T Consensus 47 ~~~~~~~~~~~~~vv~is~d~~~~~~~~~-~~~~~ 80 (140)
T cd03017 47 RDLYEEFKALGAVVIGVSPDSVESHAKFA-EKYGL 80 (140)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCC
Confidence 34455566667777777776666666555 55454
No 484
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=23.23 E-value=5.2e+02 Score=22.78 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=46.4
Q ss_pred CcHHHHHHHHHhCCCC-EEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEe
Q 026853 94 PGANRLIKHLSCHGVP-MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~-~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vg 172 (232)
|-+.=.|++|-..|+. +++++......+...+ +...|...++..+....-+..+.-+.+++.+-++-=+..+=++.-|
T Consensus 56 pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i-~~sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~litgDFiLVsg 134 (673)
T KOG1461|consen 56 PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYI-EKSEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLITGDFILVSG 134 (673)
T ss_pred hHHHHHHHHHHhcCceEEEEEecccHHHHHHHH-hhccccccccceEEEEcCCCcCcHHHHHHHHHhcceeecceEEEeC
Confidence 4455567888887755 5666666666666666 5555655555322221112334445555555555334444566677
Q ss_pred Cchhhh
Q 026853 173 DSVIGV 178 (232)
Q Consensus 173 D~~~Di 178 (232)
|..+++
T Consensus 135 d~vsN~ 140 (673)
T KOG1461|consen 135 DTVSNM 140 (673)
T ss_pred CeeecC
Confidence 777443
No 485
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=23.13 E-value=2.3e+02 Score=21.50 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEe
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vg 172 (232)
+..+.+.+.+.+..|..+++--+.-...+...| +..|+..|-+.+-++.++ |..++. +--++
T Consensus 153 fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeL-KdAGLTAYNHNlDTSREy---------YskvIt--------TRtYD 214 (380)
T KOG2900|consen 153 FKRILEMIKEVRDMGMEVCVTLGMVDQQQAKEL-KDAGLTAYNHNLDTSREY---------YSKVIT--------TRTYD 214 (380)
T ss_pred HHHHHHHHHHHHcCCceeeeeeccccHHHHHHH-HhccceecccCccchhhh---------hcccce--------ecchH
Confidence 345566777777788877777676666666677 777887665544333222 221111 12345
Q ss_pred CchhhhhhhhhcCCE
Q 026853 173 DSVIGVVAGKAAGME 187 (232)
Q Consensus 173 D~~~Di~~a~~~G~~ 187 (232)
|..+-|.-.+.+|+.
T Consensus 215 dRL~Ti~nvr~aGik 229 (380)
T KOG2900|consen 215 DRLQTIKNVREAGIK 229 (380)
T ss_pred HHHHHHHHHHHhcce
Confidence 666777777777743
No 486
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=23.10 E-value=1e+02 Score=14.63 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=13.5
Q ss_pred CCCEEEEeCCchHHHHHHH
Q 026853 107 GVPMALASNSHRATIESKI 125 (232)
Q Consensus 107 g~~~~i~s~~~~~~~~~~l 125 (232)
+..++|-||+......+.+
T Consensus 4 ~LqI~ISTnG~sP~la~~i 22 (30)
T PF14824_consen 4 PLQIAISTNGKSPRLARLI 22 (30)
T ss_dssp TEEEEEEESSS-HHHHHHH
T ss_pred CeEEEEECCCCChHHHHHH
Confidence 4678899999777766555
No 487
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.82 E-value=3.9e+02 Score=21.11 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhhhcCCccccceeecccccCCCCCCHHHHHHHHHhcCCCCCcEEEEe
Q 026853 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (232)
Q Consensus 93 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vg 172 (232)
.+...++++.|.+.|+.++++.+.........+.+..+ .... -.++..-.-+..++.... ++||
T Consensus 194 ~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~--~~~~--------l~~k~sL~e~~~li~~a~------l~I~ 257 (334)
T COG0859 194 LEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLP--NAVI--------LAGKTSLEELAALIAGAD------LVIG 257 (334)
T ss_pred HHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcC--Cccc--------cCCCCCHHHHHHHHhcCC------EEEc
Confidence 34677888888888855555554422222222212221 1100 123332222333332222 4666
Q ss_pred CchhhhhhhhhcCCEEEEeCC
Q 026853 173 DSVIGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 173 D~~~Di~~a~~~G~~~i~v~~ 193 (232)
-...=+..|...|.++|.+-.
T Consensus 258 ~DSg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 258 NDSGPMHLAAALGTPTIALYG 278 (334)
T ss_pred cCChHHHHHHHcCCCEEEEEC
Confidence 666667777778888888776
No 488
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=22.74 E-value=1.3e+02 Score=17.86 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHhcCCCCCcEE
Q 026853 146 TGKPSPDIFLEAAKRLNMEPSSSL 169 (232)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~~ 169 (232)
..-|+++.+++..++-|++.+++.
T Consensus 52 y~Ap~~eaV~~~~~~aG~p~d~I~ 75 (77)
T PF14026_consen 52 YEAPDEEAVREHARRAGLPADRIT 75 (77)
T ss_pred EECCCHHHHHHHHHHcCCCcceEE
Confidence 456888899999988898887765
No 489
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=22.26 E-value=99 Score=24.74 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCCEEEEeCCchH
Q 026853 96 ANRLIKHLSCHGVPMALASNSHRA 119 (232)
Q Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~ 119 (232)
..+.+..|++.|+.+++||.+.-.
T Consensus 33 l~~~ia~L~~~G~eVilVSSGAia 56 (369)
T COG0263 33 LVRQVAALHKAGHEVVLVSSGAIA 56 (369)
T ss_pred HHHHHHHHHhCCCEEEEEccchhh
Confidence 446688899999999999988544
No 490
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=22.01 E-value=2.2e+02 Score=20.94 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCCC-cEEEEeCch-hhhhhhhhcCCEEEEeCC
Q 026853 145 RTGKPSPDIFLEAAKRLNMEPS-SSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (232)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~-~~~~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (232)
..++|+|...+.+-. ++..+. .+++.|=+. .|+..+...|..++++.-
T Consensus 18 ~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDl 67 (218)
T PF05724_consen 18 DQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDL 67 (218)
T ss_dssp --TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES
T ss_pred CCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEec
Confidence 346677755555444 566554 788999999 799999999999998865
No 491
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=22.00 E-value=1.1e+02 Score=23.13 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCch
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHR 118 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~ 118 (232)
.-+|+.+++++.|++.|+++++..+..-
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 4678899999999999999988877654
No 492
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=21.98 E-value=54 Score=20.81 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=16.2
Q ss_pred ccccEEEEeCCCcccccHHHH
Q 026853 7 KLMSCVILDLDGTLLNTDGMF 27 (232)
Q Consensus 7 ~~~k~i~fDlDGTL~~~~~~~ 27 (232)
..++.|+||+|=...++...+
T Consensus 26 fpfrGVV~DvDPeyanteew~ 46 (116)
T COG3785 26 FPFRGVVFDVDPEYANTEEWP 46 (116)
T ss_pred cccceEEEecCcccccCccCh
Confidence 367899999998888775543
No 493
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=21.93 E-value=2.3e+02 Score=18.13 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=37.5
Q ss_pred cccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCcchhhhhcCCChHHHHHHHHHHcCCCccHHhHHHHHH
Q 026853 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY 80 (232)
Q Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (232)
.-+-|-.|=||-|.++..........++++-++..+.+- -......+.+..+++.+....-+.+.+.
T Consensus 7 ~gk~i~~D~dGyL~~~~dW~E~vAe~lA~~e~i~LT~eH------Wevv~fvR~fy~ef~tsPaiRMLvK~~~ 73 (111)
T COG2920 7 EGKEIETDEDGYLKDSEDWSEKVAEALAEREGIELTEEH------WEVVRFVREFYEEFNTSPAIRMLVKAMA 73 (111)
T ss_pred cCeEEeecccchhcChhhhCHHHHHHHHHHhccCccHHH------HHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 346788999999998876555555556666666433321 0112233444555555544444444443
No 494
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.84 E-value=1.3e+02 Score=21.63 Aligned_cols=29 Identities=7% Similarity=0.075 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeCCchHH
Q 026853 92 ALPGANRLIKHLSCHGVPMALASNSHRAT 120 (232)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~ 120 (232)
-.+.+.+.++.++++|.+++.+|+.....
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 35678889999999999999999886554
No 495
>PRK10518 alkaline phosphatase; Provisional
Probab=21.81 E-value=67 Score=26.89 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=32.2
Q ss_pred cEEEEeCch--hhhhhhhhcCC------------EEEEeCCCCCccccchhhhHhhhhccCcCccccCCCCCC
Q 026853 167 SSLVIEDSV--IGVVAGKAAGM------------EVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQ 225 (232)
Q Consensus 167 ~~~~vgD~~--~Di~~a~~~G~------------~~i~v~~~~~~~~~~~~~~~~~~~l~el~~~l~~~~~~~ 225 (232)
=++||||+. +-+.+|+.... +..+....+........++++.+|-.-...+.-+...++
T Consensus 72 VIlfIGDGMg~s~itaaR~~~~g~~G~~~~~d~lp~~g~~~Tys~d~~~~~~~~VtDSAatATA~aTGvKT~n 144 (476)
T PRK10518 72 VILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYN 144 (476)
T ss_pred EEEEEeCCCCHHHHHHHHHHhcCCCCccccccccccceeeeeccCCccccCcccccCchHhhHHHhhcccccC
Confidence 366899999 57888876541 111111112222222345567777666666666655554
No 496
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=21.75 E-value=1.1e+02 Score=19.34 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=18.7
Q ss_pred CcHHHHHHHHHhCCCCEEEEeCCchH
Q 026853 94 PGANRLIKHLSCHGVPMALASNSHRA 119 (232)
Q Consensus 94 ~~~~~~l~~l~~~g~~~~i~s~~~~~ 119 (232)
.++.++...++..+.+.+++||+...
T Consensus 68 ~~~~Q~~~Y~~~~~~~~~i~tNG~~~ 93 (112)
T PF13588_consen 68 KAVEQLKSYARALGAPYGILTNGKEF 93 (112)
T ss_dssp -SHHHHHHHHHHHT-SEEEEE-SS-E
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCeE
Confidence 47888888888889999999999643
No 497
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.72 E-value=2e+02 Score=17.34 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=22.5
Q ss_pred CCCCcHHHHHHHHHhCCCCEEEEeCCchHHHHHHH
Q 026853 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (232)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (232)
.+.-|..+.+..+++....++++.++..+.....+
T Consensus 11 kl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i 45 (82)
T PRK13602 11 SIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKV 45 (82)
T ss_pred CEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHH
Confidence 45667788888887766667777666555443333
No 498
>PF01888 CbiD: CbiD; InterPro: IPR002748 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiD, an essential protein for cobalamin biosynthesis in both Salmonella typhimurium and Bacillus megaterium. A deletion mutant of CbiD suggests that this enzyme is involved in C-1 methylation and deacylation reactions required during the ring contraction process in the anaerobic pathway to cobalamin (similar role as CobF) []. The CbiD protein has a putative S-AdoMet binding site []. CbiD has no counterpart in the aerobic pathway.; GO: 0016740 transferase activity, 0009236 cobalamin biosynthetic process; PDB: 1SR8_A.
Probab=21.69 E-value=3.8e+02 Score=20.57 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCCCCcEEEEeCch-hhhhhhhhcCCEEEEeC
Q 026853 153 IFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVP 192 (232)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~vgD~~-~Di~~a~~~G~~~i~v~ 192 (232)
..+.+.+.++++.+.++.+||-. .=++.|.+.|+..+.+.
T Consensus 209 ge~~a~~~~~l~~~~~v~~gnfiG~~L~~a~~~g~~~vll~ 249 (261)
T PF01888_consen 209 GEKFARRLLGLPEEAIVQMGNFIGFALEEAAEKGFKKVLLV 249 (261)
T ss_dssp HHHHHHHH-TS--EEEE------TT-HHHHTT-SSEEE-EE
T ss_pred HHHHHHHhhccchhcEEEecchhHHHHHHHHHcCCCEEEEe
Confidence 34555566688888888888877 67788888888766554
No 499
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=21.59 E-value=1.1e+02 Score=19.78 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=5.7
Q ss_pred hhhhcCCEEEEeCC
Q 026853 180 AGKAAGMEVVAVPS 193 (232)
Q Consensus 180 ~a~~~G~~~i~v~~ 193 (232)
.|+++|+..+.+.-
T Consensus 52 ~a~~~Gl~y~~iPv 65 (110)
T PF04273_consen 52 AAEALGLQYVHIPV 65 (110)
T ss_dssp HHHHCT-EEEE---
T ss_pred HHHHcCCeEEEeec
Confidence 45556666555554
No 500
>PF06616 BsuBI_PstI_RE: BsuBI/PstI restriction endonuclease C-terminus; InterPro: IPR009528 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (3.1.21.4 from EC). The enzymes of the BsuBI restriction/modification (R/M) system recognise the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 2IXS_B.
Probab=21.53 E-value=1.2e+02 Score=23.74 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=21.8
Q ss_pred CHHHHHHHHHhcC---CCCCcEEEEeCchh-----hhhhhhhcCC
Q 026853 150 SPDIFLEAAKRLN---MEPSSSLVIEDSVI-----GVVAGKAAGM 186 (232)
Q Consensus 150 ~~~~~~~~~~~~~---~~~~~~~~vgD~~~-----Di~~a~~~G~ 186 (232)
+-...+.+++.+. .+...+++|||+.+ |-+.++++|+
T Consensus 163 hn~L~kaIIEeFaprF~pg~~vLyvgDtg~K~~~~d~~~l~~LGi 207 (306)
T PF06616_consen 163 HNELIKAIIEEFAPRFAPGPEVLYVGDTGDKVLYFDEELLKELGI 207 (306)
T ss_dssp THHHHHHHHHTHHHHHSTT-EEEEEE-SSSS-EEE-HHHHHHC--
T ss_pred chHHHHHHHHHHHHhhCCCceEEEEcCCCCceeeccHHHHHHcCC
Confidence 3345555555543 45588999999973 6688999994
Done!