BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026854
         (232 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FCH|A Chain A, The Structure Of A Previously Undetected Carboxysome Shell
           Protein: Csos1d From Prochlorococcus Marinus Med4
          Length = 281

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 43  FSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI 102
            ++ GA+  TS L+ GD K GS ++   + +  S     FIT+ +E   +   A  V++I
Sbjct: 20  LTFQGAMEPTSSLNRGDRKKGSSLVTGSEVQSQSNGASCFITTDSEKSLVSRQASQVEQI 79


>pdb|3FCH|B Chain B, The Structure Of A Previously Undetected Carboxysome Shell
           Protein: Csos1d From Prochlorococcus Marinus Med4
          Length = 281

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 43  FSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI 102
            ++ GA+  TS L+ GD K GS ++   + +  S     FIT+ +E   +   A  V++I
Sbjct: 20  LTFQGAMEPTSSLNRGDRKKGSSLVTGSEVQSQSNGASCFITTDSEKSLVSRQASQVEQI 79


>pdb|3F56|A Chain A, The Structure Of A Previously Undetected Carboxysome Shell
           Protein: Csos1d From Prochlorococcus Marinus Med4
 pdb|3F56|B Chain B, The Structure Of A Previously Undetected Carboxysome Shell
           Protein: Csos1d From Prochlorococcus Marinus Med4
 pdb|3F56|C Chain C, The Structure Of A Previously Undetected Carboxysome Shell
           Protein: Csos1d From Prochlorococcus Marinus Med4
 pdb|3F56|D Chain D, The Structure Of A Previously Undetected Carboxysome Shell
           Protein: Csos1d From Prochlorococcus Marinus Med4
 pdb|3F56|E Chain E, The Structure Of A Previously Undetected Carboxysome Shell
           Protein: Csos1d From Prochlorococcus Marinus Med4
 pdb|3F56|F Chain F, The Structure Of A Previously Undetected Carboxysome Shell
           Protein: Csos1d From Prochlorococcus Marinus Med4
          Length = 281

 Score = 28.1 bits (61), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 43  FSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI 102
            ++ GA   TS L+ GD K GS ++   + +  S     FIT+ +E   +   A  V++I
Sbjct: 20  LTFQGAXEPTSSLNRGDRKKGSSLVTGSEVQSQSNGASCFITTDSEKSLVSRQASQVEQI 79


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.141    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,971,861
Number of Sequences: 62578
Number of extensions: 152510
Number of successful extensions: 266
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 4
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.9 bits)