Query 026854
Match_columns 232
No_of_seqs 377 out of 1270
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 23:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 3.5E-23 1.2E-27 165.6 16.0 184 25-220 24-212 (451)
2 3o7q_A L-fucose-proton symport 99.9 2.8E-22 9.7E-27 159.9 19.7 185 25-220 22-236 (438)
3 4gc0_A D-xylose-proton symport 99.9 1.3E-22 4.4E-27 164.2 17.6 187 33-230 281-478 (491)
4 4aps_A DI-OR tripeptide H+ sym 99.9 4.9E-21 1.7E-25 155.0 16.3 182 28-214 12-196 (491)
5 2gfp_A EMRD, multidrug resista 99.9 1.8E-21 6E-26 152.4 12.5 178 33-221 4-181 (375)
6 2xut_A Proton/peptide symporte 99.8 1.8E-19 6.1E-24 147.0 16.9 182 29-214 12-198 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.8 2.9E-19 1E-23 142.9 15.9 177 29-215 252-434 (451)
8 2cfq_A Lactose permease; trans 99.8 1.1E-18 3.6E-23 138.7 14.7 150 74-223 258-408 (417)
9 4gc0_A D-xylose-proton symport 99.8 8.3E-18 2.8E-22 136.0 16.5 146 73-219 53-224 (491)
10 3o7q_A L-fucose-proton symport 99.8 1.6E-17 5.3E-22 132.4 17.0 177 18-210 250-428 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.6 5E-16 1.7E-20 125.6 8.4 173 39-222 293-479 (491)
12 2cfq_A Lactose permease; trans 99.5 1.1E-15 3.6E-20 121.4 1.7 177 31-218 9-191 (417)
13 2gfp_A EMRD, multidrug resista 99.5 2.3E-14 7.8E-19 112.0 4.6 158 29-199 199-361 (375)
14 2xut_A Proton/peptide symporte 99.3 1.7E-12 6E-17 105.7 4.2 148 78-225 338-513 (524)
15 2g9p_A Antimicrobial peptide l 81.8 1 3.4E-05 18.9 1.7 14 94-107 2-15 (26)
16 2dw3_A Intrinsic membrane prot 57.1 25 0.00085 20.0 4.9 34 188-221 27-60 (77)
17 2nrg_A Intrinsic membrane prot 39.0 55 0.0019 18.8 4.7 33 189-221 29-61 (82)
18 3b9w_A Ammonium transporter fa 33.5 1.7E+02 0.0059 22.9 10.3 13 175-187 302-314 (407)
19 4dve_A Biotin transporter BIOY 21.5 2.1E+02 0.0071 19.8 5.9 23 83-105 101-123 (198)
20 1cmk_I CAMP-dependent protein 20.8 9 0.00031 16.7 -1.1 9 99-107 9-17 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.91 E-value=3.5e-23 Score=165.65 Aligned_cols=184 Identities=15% Similarity=0.049 Sum_probs=157.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854 25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR 104 (232)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr 104 (232)
+..++.+....+..+......+......|.+.++. .+..+.++..+...++..++.++.|+++||+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~ 91 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG------------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP 91 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST------------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCc
Confidence 34455566666666666666666777788776432 456778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchh
Q 026854 105 KLSMVLMFVLACIFLLPLVF----HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVC 180 (232)
Q Consensus 105 r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~ 180 (232)
|++++++..+.+++.+...+ .++.+.+++.+++.|++.+...+...++++|++|+++|+++.++.+....+|..++
T Consensus 92 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 171 (451)
T 1pw4_A 92 RVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIP 171 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 88888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854 181 PLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETKG 220 (232)
Q Consensus 181 ~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 220 (232)
|.+++++.+..| |+..+++.+++.++..+..++..||+++
T Consensus 172 ~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 172 PLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999889888 9999999888887777666666676543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.90 E-value=2.8e-22 Score=159.87 Aligned_cols=185 Identities=14% Similarity=0.085 Sum_probs=156.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854 25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR 104 (232)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr 104 (232)
+++++.++.+....+.............|.+.++.+ .+..+.++..+...++..++.++.|+++||+||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~ 90 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFT-----------LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY 90 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-----------CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 344556666666777777777778888888887776 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhH
Q 026854 105 KLSMVLMFVLACIFLLPL---VFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCP 181 (232)
Q Consensus 105 r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~ 181 (232)
|++++++..+.+++.+.. ...++.+.+.+.+++.|++.+...+...++++|++|+++|+++.++.+....+|..++|
T Consensus 91 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 170 (438)
T 3o7q_A 91 KAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAV 170 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888 66788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-hccc-------------------------hhHHHHHHHHHHHHHHHHHh-cccccccC
Q 026854 182 LVAVGLV-TSCH-------------------------LRLAVILFEVVFVLAIASSL-LFPFETKG 220 (232)
Q Consensus 182 ~i~~~l~-~~~g-------------------------~~~~~~~~~~~~~~~~~~~~-~~~~e~~~ 220 (232)
.+.+.+. +..+ |+..+++.++...+..+..+ ...||+++
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 171 VFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 9999998 5544 77788776666655544433 33465544
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.90 E-value=1.3e-22 Score=164.21 Aligned_cols=187 Identities=18% Similarity=0.164 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHH
Q 026854 33 LLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMF 112 (232)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 112 (232)
......+......+....|.|.+.+..+ .+..+.........+..+++.++++++.||+|||+.++.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~ 349 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLG-----------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGA 349 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSS-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcC-----------CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccch
Confidence 3333344445556666777777776554 55666677777888999999999999999999999999998
Q ss_pred HHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHH
Q 026854 113 VLACIFLLPLVFH-----QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGL 187 (232)
Q Consensus 113 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 187 (232)
..+.++.+.+... ++........+....+..+..++.+.+.+|++|++.|+++.|+.+..+++++.+++.+.+.+
T Consensus 350 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 350 LGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877666541 11222222222233334455678899999999999999999999999999999999988876
Q ss_pred hhc------cchhHHHHHHHHHHHHHHHHHhcccccccCCCchhhHHhh
Q 026854 188 VTS------CHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAI 230 (232)
Q Consensus 188 ~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 230 (232)
.+. .++...+++++++++++.++.++++||||++++||.++..
T Consensus 430 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f 478 (491)
T 4gc0_A 430 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALW 478 (491)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGT
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHh
Confidence 543 3455678888999999998888999999999999876544
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.87 E-value=4.9e-21 Score=155.00 Aligned_cols=182 Identities=12% Similarity=0.038 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh-hchHH
Q 026854 28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK-IGRKL 106 (232)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~ 106 (232)
++..+......++....++....+.+.+.++.. ..++.+.+..+.++..+...++..++.++.|+++|| +|||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~ 86 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI-----STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP 86 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 345666667777777888888777777775420 000124889999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccch--hhhhhHHHHHhhhhhhchhHHHH
Q 026854 107 SMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSA--RTTGAGVASAVGRVGGMVCPLVA 184 (232)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~i~ 184 (232)
++..+..+..++.+...+.++.+.+.+.+++.|++.+...+...++++|++|+++ |+++.++.+...++|..++|.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888899999999999999999999999999999988 77788888899999999999999
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854 185 VGLVTSCHLRLAVILFEVVFVLAIASSLLF 214 (232)
Q Consensus 185 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 214 (232)
+.+.+..||+..+++.++..+++.+...+.
T Consensus 167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 167 GAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998877666665554433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.86 E-value=1.8e-21 Score=152.44 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHH
Q 026854 33 LLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMF 112 (232)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 112 (232)
......+.............|.+.++.+ .+..+.++..+...++..++.++.|+++||+|||+.+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 72 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLN-----------VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM 72 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSS-----------STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 3444555666666666777888887766 88899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc
Q 026854 113 VLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH 192 (232)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g 192 (232)
.+..++.+.....++.+.+.+.+++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+++.+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 152 (375)
T 2gfp_A 73 SIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccCC
Q 026854 193 LRLAVILFEVVFVLAIASSLLFPFETKGR 221 (232)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 221 (232)
|+..+.+.++...+..+...+..||++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 153 WRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 99999888888777776566677876543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.83 E-value=1.8e-19 Score=146.97 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh-chHHH
Q 026854 29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI-GRKLS 107 (232)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~ 107 (232)
+.++...+..++....++....+.|.+.++..+. ....+.+..+.++..+...++..++.++.|+++||+ |||++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLL----SIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS----CCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3444556667777777777777777776432200 000116788889999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHH---HHHhhhhhhchhHHH
Q 026854 108 MVLMFVLACIFLLPLVFHQ-SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGV---ASAVGRVGGMVCPLV 183 (232)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~g~~~~~~i 183 (232)
+.++..+..++.+...+.+ +.+.+.+.+++.|++.+...+...++++|.+|+++|+++.+. .+...++|..++|.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888887 888888999999999999999999999999999999876666 888889999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854 184 AVGLVTSCHLRLAVILFEVVFVLAIASSLLF 214 (232)
Q Consensus 184 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 214 (232)
.+++.+..||+..+.+.++..++..+.....
T Consensus 168 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp STHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998899999988887776666555443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.82 E-value=2.9e-19 Score=142.88 Aligned_cols=177 Identities=15% Similarity=0.171 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh--chHH
Q 026854 29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI--GRKL 106 (232)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~ 106 (232)
+.++...+..++.....+....+.|.+.++.. +.+..+.+.......++.+++.++.|++.||+ |||+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 321 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 321 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 45566666677777777888889999987632 38888889999999999999999999999999 9999
Q ss_pred HHHHHHHHHH-HHHHHHHhh--hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhh-hhchhHH
Q 026854 107 SMVLMFVLAC-IFLLPLVFH--QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRV-GGMVCPL 182 (232)
Q Consensus 107 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~ 182 (232)
.+..+..+.. ++.+.+... .+.+...+..++.|++.+...+....+..|.+|++.|+++.|+.+...++ |..++|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 322 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888777766 555554443 35666667777788888888888889999999999999999999999999 9999999
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHhccc
Q 026854 183 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP 215 (232)
Q Consensus 183 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 215 (232)
+.|++.+..|+...+++.+++.+++.+..+...
T Consensus 402 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 402 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888888777766665543
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.80 E-value=1.1e-18 Score=138.72 Aligned_cols=150 Identities=12% Similarity=0.060 Sum_probs=119.8
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 026854 74 DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYA 153 (232)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 153 (232)
....+....+..++.+++.++.|+++||+|||+++..+..+.++..+...+.++.+...+..++.+++.+...+..+.+.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777788889999999999999999999888888877766666655665555555566666655666678899
Q ss_pred ccccccchhhhhhHHH-HHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCCc
Q 026854 154 PEIYPTSARTTGAGVA-SAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGREL 223 (232)
Q Consensus 154 ~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 223 (232)
+|.+|++.|+++.++. +...++|+.++|.+.|++.+..|+...|.+.+++.+++.+..+...||+++.++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 9999999999999995 777789999999999999998888888888888888887777777777665543
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.78 E-value=8.3e-18 Score=136.00 Aligned_cols=146 Identities=15% Similarity=0.038 Sum_probs=118.1
Q ss_pred CchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHH
Q 026854 73 KDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLV------------------FHQSAVVTTVL 134 (232)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 134 (232)
+....++..+...++.++|++++|+++||+|||++++++.++..++.+... .+++.+.+++.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 344566778888999999999999999999999999999999999988877 36788899999
Q ss_pred HHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc--------chhHHHHHHHHHHHH
Q 026854 135 LFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC--------HLRLAVILFEVVFVL 206 (232)
Q Consensus 135 ~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~--------g~~~~~~~~~~~~~~ 206 (232)
+++.|++.|+..+....+++|..|++.|++..++.+.....|..+++.+........ +|+..+ .......+
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 211 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMF-ASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHH-HTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHh-hhhhhhhh
Confidence 999999999999999999999999999999999999999899888888877665432 233333 33333344
Q ss_pred HHHHHhccccccc
Q 026854 207 AIASSLLFPFETK 219 (232)
Q Consensus 207 ~~~~~~~~~~e~~ 219 (232)
..+...++.||++
T Consensus 212 ~~~~~~~~~peSp 224 (491)
T 4gc0_A 212 LFLMLLYTVPESP 224 (491)
T ss_dssp HHHHHGGGSCCCH
T ss_pred hhhhhhhcCCCCh
Confidence 4444556668874
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.77 E-value=1.6e-17 Score=132.43 Aligned_cols=177 Identities=10% Similarity=-0.033 Sum_probs=136.5
Q ss_pred chhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHH
Q 026854 18 SFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKL-SSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSA 96 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 96 (232)
++++++++ +.++...+..++.....+....+.|.+ .++.. +.+..+.+.......++.+++.++.|
T Consensus 250 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 250 SLSRLARI---RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIP----------GMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp HHHHHTTC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST----------TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC----------CcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445543 334445555555666667777888888 75542 37888899999999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhh
Q 026854 97 IIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVG 176 (232)
Q Consensus 97 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g 176 (232)
+++||+|||+.+..+..+..++.+...+.++.+... ..++.+++.+...+..+++..|.+|++ |+++.++.. ...+|
T Consensus 317 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 317 WLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence 999999999999999988888887777766654433 346777888888899999999999977 888888877 67799
Q ss_pred hchhHHHHHHHhhccc-hhHHHHHHHHHHHHHHHH
Q 026854 177 GMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIAS 210 (232)
Q Consensus 177 ~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~ 210 (232)
+.++|.+.|++.+..| ++..+.+.+++.++..+.
T Consensus 394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 777777665554444443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.63 E-value=5e-16 Score=125.59 Aligned_cols=173 Identities=8% Similarity=-0.093 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH-----HHHH
Q 026854 39 FANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV-----LMFV 113 (232)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~ 113 (232)
+.....+.....+.|.+.++.. +.+..+.+.......++.+++.++.+++.||+|||+... .+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 293 VLFWAIEEQGSVVLATFAAERV----------DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHSC----------CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHh----------ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 3333344444445555554322 133344566667778888889999999999999886544 5666
Q ss_pred HHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHH
Q 026854 114 LACIFLLPLVFHQ---------SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA 184 (232)
Q Consensus 114 ~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~ 184 (232)
+..++...+.... +.+...+..++.+++.+...+..+.+..|.+|++.|+++.|+.+...++|..++|.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555544422 5556667777888888888889999999999999999999999999999999999999
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCC
Q 026854 185 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRE 222 (232)
Q Consensus 185 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 222 (232)
+++.+. +....+...+++.++..+..++..++.+++.
T Consensus 443 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 443 TLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp GGGGGS-STTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765 5666777777777777777776666665543
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.54 E-value=1.1e-15 Score=121.41 Aligned_cols=177 Identities=11% Similarity=0.005 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH
Q 026854 31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVL 110 (232)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 110 (232)
++......+.....+.....+.|.+.++.. +.+..+.++..+...++..++++++|+++||+|||+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~ 78 (417)
T 2cfq_A 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDIN----------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW 78 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTTT----------CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 333444444444444555567787775432 3888899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH---HhhhhHH-HHHHHHHHHHHHHhhhhhhhhhcccccccc--chhhhhhHHHHHhhhhhhchhHHHH
Q 026854 111 MFVLACIFLLPL---VFHQSAV-VTTVLLFGVRMCATGTITVATIYAPEIYPT--SARTTGAGVASAVGRVGGMVCPLVA 184 (232)
Q Consensus 111 ~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~~~~i~ 184 (232)
+..+..+..... .+.+... .......+.+...+...+.......+..++ +.|+.+.+..+..+.+|..++|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~ 158 (417)
T 2cfq_A 79 IITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIV 158 (417)
T ss_dssp HHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 877665422111 1111110 011122222222222222222233333332 3456677777778889999999999
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854 185 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 218 (232)
Q Consensus 185 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 218 (232)
+++.+. +|+..+++.++..++..+..++..||+
T Consensus 159 ~~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 159 GIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HHHHHH-CSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHHHHh-chhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 998874 777777765555444433333343444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.47 E-value=2.3e-14 Score=112.00 Aligned_cols=158 Identities=11% Similarity=-0.016 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854 29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM 108 (232)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~ 108 (232)
|.++...+..+......+....+.|.+.++.. +.+..+.+.......++.+++.++.+++.||+||+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~-- 266 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL----------GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-- 266 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH----------HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44455555556666666677777777765421 367778888888899999999999999999998832
Q ss_pred HHHHHH-HHHHHH--HHHh--hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHH
Q 026854 109 VLMFVL-ACIFLL--PLVF--HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLV 183 (232)
Q Consensus 109 ~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i 183 (232)
..+... ...+.. .... .++.+...+..++.+++.+...+....+..|..| ++|+++.|+.+...++|..++|.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 267 WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence 222222 222111 1111 2355556667778888888888999999999998 899999999999999999999999
Q ss_pred HHHHhhccchhHHHHH
Q 026854 184 AVGLVTSCHLRLAVIL 199 (232)
Q Consensus 184 ~~~l~~~~g~~~~~~~ 199 (232)
.+.+.+..++...+.+
T Consensus 346 ~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 346 SAMLPQTGQGSLGLLM 361 (375)
T ss_dssp CTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcccHHHHH
Confidence 9999877665544443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.28 E-value=1.7e-12 Score=105.70 Aligned_cols=148 Identities=9% Similarity=0.024 Sum_probs=90.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHH----hhhch----HHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHH
Q 026854 78 YVDVFITSFAELPGLILSAIIV----DKIGR----KLSMVLMFVLACIFLLPLVFH---------QSAVVTTVLLFGVRM 140 (232)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~g~l~----dr~gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~ 140 (232)
+.......++.+++.++.+++. ||.|+ ++.+.++..+.+++.+.+... .+.+...+..++.++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 3333333344444444444432 44433 245666777766666655542 245566667788888
Q ss_pred HHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc--h---------hHHHHHHHHHHHHHHH
Q 026854 141 CATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH--L---------RLAVILFEVVFVLAIA 209 (232)
Q Consensus 141 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g--~---------~~~~~~~~~~~~~~~~ 209 (232)
+.+...+..+.+..|..|++.|++++|+.+...++|+.++|.+.+.+.+..+ | ...+++.+++.+++.+
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI 497 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999998877421 1 2226666777777776
Q ss_pred HHhcccccccCCCchh
Q 026854 210 SSLLFPFETKGRELKD 225 (232)
Q Consensus 210 ~~~~~~~e~~~~~~~~ 225 (232)
..+++.+++++++.++
T Consensus 498 ~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 498 VFALYARSYQMQDHYR 513 (524)
T ss_dssp HHC-------------
T ss_pred HHHHHHHHhccchhhh
Confidence 6666666665544433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=81.83 E-value=1 Score=18.89 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=11.5
Q ss_pred HHHHHHhhhchHHH
Q 026854 94 LSAIIVDKIGRKLS 107 (232)
Q Consensus 94 ~~g~l~dr~grr~~ 107 (232)
+.|.+..|+|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999964
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=57.06 E-value=25 Score=20.02 Aligned_cols=34 Identities=3% Similarity=-0.126 Sum_probs=17.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHhcccccccCC
Q 026854 188 VTSCHLRLAVILFEVVFVLAIASSLLFPFETKGR 221 (232)
Q Consensus 188 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 221 (232)
....||...+++...+.+++.-.+-..+||..+.
T Consensus 27 lkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 27 MKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 3333455555555555555554455566876544
No 17
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=39.00 E-value=55 Score=18.81 Aligned_cols=33 Identities=3% Similarity=-0.147 Sum_probs=17.4
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhcccccccCC
Q 026854 189 TSCHLRLAVILFEVVFVLAIASSLLFPFETKGR 221 (232)
Q Consensus 189 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 221 (232)
...||...+++...+.+++.-.+-..+||..+.
T Consensus 29 KGAG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~ 61 (82)
T 2nrg_A 29 KGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 61 (82)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHSSTTTTTC
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 333455555555555555554455566876544
No 18
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=33.52 E-value=1.7e+02 Score=22.90 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=5.8
Q ss_pred hhhchhHHHHHHH
Q 026854 175 VGGMVCPLVAVGL 187 (232)
Q Consensus 175 ~g~~~~~~i~~~l 187 (232)
+++++|.+..+..
T Consensus 302 v~Gi~G~l~~glf 314 (407)
T 3b9w_A 302 LPGLLGGFSAILI 314 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 19
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=21.55 E-value=2.1e+02 Score=19.82 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=17.1
Q ss_pred HHHhhhhhHHHHHHHHHhhhchH
Q 026854 83 ITSFAELPGLILSAIIVDKIGRK 105 (232)
Q Consensus 83 ~~~~~~~~~~~~~g~l~dr~grr 105 (232)
-+-++..++..+.|++.||..++
T Consensus 101 GYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 101 GYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 34566678889999999997543
No 20
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=20.79 E-value=9 Score=16.72 Aligned_cols=9 Identities=22% Similarity=0.494 Sum_probs=6.3
Q ss_pred HhhhchHHH
Q 026854 99 VDKIGRKLS 107 (232)
Q Consensus 99 ~dr~grr~~ 107 (232)
+||-|||..
T Consensus 9 ~~RtGRRNA 17 (26)
T 1cmk_I 9 SGRTGRRNA 17 (26)
T ss_pred cCccccccc
Confidence 567888764
Done!