BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026855
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
W+ +E+K FERAL + ++TP RW +AR V G++ +V++ Y+ LV D++ IE+G V
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70
Query: 78 PGY 80
P Y
Sbjct: 71 PNY 73
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 111 RRKGVPWTAEEHRLFLIGLEKYGKGD---WRSISRNAVVSRTPTQVASHAQ 158
R G PW+A+E++ F L Y K W +++R AV RTP +V H +
Sbjct: 5 RGSGRPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYE 54
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 56.6 bits (135), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLV 64
WT EE KL E+AL T+P TP RW++IA VPG++ D +RY +LV
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELV 52
>pdb|2CQQ|A Chain A, Solution Structure Of Rsgi Ruh-037, A Myb Dna-Binding
Domain In Human Cdna
Length = 72
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
WT E+ R++V FP TPGRWE+IA ++ G+S DV + L D G+V
Sbjct: 11 WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL-KDSVTCSPGMVSG 68
Query: 78 P 78
P
Sbjct: 69 P 69
>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLV 64
WT+ + KL E AL +P + W++IAR VP KS D RY LV
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161
V WT EE LF GL K+G+ W IS+ + SRT QV S+A++YF
Sbjct: 10 VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYF 54
Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQ 57
WT EE +LFE+ L F RW +I++ + ++ + V+
Sbjct: 12 WTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVK 47
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 106 DRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNA-VVSRTPTQV 153
D T K WT EE G++KYG+G+W +IS+N V+RT +
Sbjct: 6 DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 54
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 106 DRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNA-VVSRTPTQV 153
D T K WT EE G++KYG+G+W +IS+N V+RT +
Sbjct: 3 DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 106 DRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNA-VVSRTPTQV 153
D T K WT EE G++KYG+G+W +IS+N V+RT +
Sbjct: 2 DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 50
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYD 61
W E+ FE AL ++TP RW+++A+ V G++ +V++ Y+
Sbjct: 23 WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 34.3 bits (77), Expect = 0.057, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 117 WTAEEHRLFLIGLEKYGKGDWRSISRN-AVVSRTPTQV 153
WT EE G++KYG+G+W +IS+N V+RT +
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 33.9 bits (76), Expect = 0.080, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 117 WTAEEHRLFLIGLEKYGKGDWRSISRN-AVVSRTPTQV 153
WT EE G++KYG+G+W +IS+N V+RT +
Sbjct: 5 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42
>pdb|1WGX|A Chain A, Solution Structure Of Rsgi Ruh-022, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
W +E + A + P+ PG W +A V +S + QR+Y
Sbjct: 11 WNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY 53
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 96 SLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSI 140
SLGNN+ + + WT EE LIG+ KYG G W I
Sbjct: 155 SLGNNTPKPVQNWSSN-----WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 96 SLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSI 140
SLGNN+ + + WT EE LIG+ KYG G W I
Sbjct: 156 SLGNNTPKPVQNWSSN-----WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 117 WTAEEHRLFLIGLEKYGKGD-----WRSISRNAVVSRTPTQVASHAQKYFLRMN 165
WT EE + L KY + W+ I+ + + +RT QVAS QKYF+++
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLT 63
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 18 WTREEDKLFERALVTFPEE--TPGRWERIARQVPGKSSVDVQRRYDDLVLDLRK 69
WT EE K E+ L+ +P E RW++IA ++ +++ V + + L K
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 31.6 bits (70), Expect = 0.39, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 117 WTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161
WTA+E L + G G+W+ ++ N + ++T + H KYF
Sbjct: 11 WTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYF 54
>pdb|1ZBA|1 Chain 1, Foot-And-Mouth Disease Virus Serotype A1061 Complexed With
Oligosaccharide Receptor.
pdb|1ZBE|1 Chain 1, Foot-And Mouth Disease Virus Serotype A1061
Length = 212
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 95 ASLGNNSN-RSRDRETERRKGVPWTAEEHRLFLI--GLEKYGKGDWRSISRNAVVSRTPT 151
A+L N SN + ++ R +P+TA L + G KY D RS ++ +R T
Sbjct: 96 AALSNTSNPTAYNKAPFTRLALPYTAPHRVLATVYDGTNKYSASDSRSGDLGSIAARVAT 155
Query: 152 QV 153
Q+
Sbjct: 156 QL 157
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-trna Synthetase Complexed
With The Trna(arg) And L-arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
Length = 607
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 131 KYGKGDWRSISRNAV-------VSRTPTQVASHAQKYFLRMNSVRKDKKRSSI--HDITT 181
+Y RS+ RNA ++ + + A K +R+ D R++I H+ TT
Sbjct: 490 QYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTT 549
Query: 182 V-----DAAGSSSQSYDPSWVGPLTDQLETHRLG 210
V S YD WV T++L T RL
Sbjct: 550 VVTYLFKLTHQVSSCYDVLWVAGQTEELATARLA 583
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
WT EED L LV +E +W IA+ PG++ + ++ R+
Sbjct: 65 WTAEEDAL----LVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
Ananatis
Length = 501
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 190 QSYDPSWVGPLTDQLETHRLGSPSDFNDQGRSIGGYHSFRF 230
Q Y P L QL THR+ +P DF DQ + YH F
Sbjct: 403 QHYMPG----LRSQLVTHRMFTPFDFRDQ---LNAYHGSAF 436
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 145 VVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQSYDPSWVGPLT 201
+ S TP A +A K N+ D + + D V + S Y P WV PLT
Sbjct: 64 ITSSTP---ADYATKNLYLWNNETCDALSAPVADWNDVSTTPTGSDKYGPYWVIPLT 117
>pdb|2V1D|B Chain B, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 178
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 117 WTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMN 165
WT EE L + + KYG+ D+++IS + + +++ QV + Y R N
Sbjct: 79 WTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRRFN 125
>pdb|2IW5|B Chain B, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|B Chain B, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|B Chain B, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 235
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 117 WTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMN 165
WT EE L + + KYG+ D+++IS + + +++ QV + Y R N
Sbjct: 136 WTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRRFN 182
>pdb|3NE9|A Chain A, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NE9|B Chain B, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NE9|C Chain C, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NFD|A Chain A, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|B Chain B, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|C Chain C, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|D Chain D, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|E Chain E, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|F Chain F, Chronobacterium Ammoniagenes Acps-Coa Complex
Length = 153
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 25 LFERALVTFPE--ETPGRWERIARQVPGKSSVDVQRRYDDLVLDL 67
+ E LV F E P RW R+A Q+ G+ + +Q D+ L L
Sbjct: 90 VIEPDLVNFAEIEVLPDRWGRVALQLKGEVAAKLQESIGDVELAL 134
>pdb|4B4C|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Chd1
Length = 211
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRT 149
+ W E+ LIG+ +YG G W I + +S T
Sbjct: 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLT 169
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 115 VPWTAEEHRLFLIGLEKYGKGD-WRSISRNAVVSRTPT 151
VP ++EH++ ++GL+ GK S N VV +PT
Sbjct: 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT 52
>pdb|1OFC|X Chain X, Nucleosome Recognition Module Of Iswi Atpase
Length = 304
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 117 WTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVR 168
WT + F+ EKYG+ D +I+++ V +TP +V + ++ R ++
Sbjct: 113 WTKRDFNQFIKANEKYGRDDIDNIAKD-VEGKTPEEVIEYNAVFWERCTELQ 163
>pdb|2X0L|B Chain B, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 133
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 117 WTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMN 165
WT EE L + + KYG+ D+++IS + + +++ QV + Y R N
Sbjct: 76 WTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRRFN 122
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 117 WTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMN 165
WT EE L + + KYG+ D+++IS + + +++ QV + Y R N
Sbjct: 383 WTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRRFN 429
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,894,727
Number of Sequences: 62578
Number of extensions: 268942
Number of successful extensions: 623
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 55
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)