Query 026855
Match_columns 232
No_of_seqs 234 out of 1535
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 23:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 100.0 6E-29 2.1E-33 189.8 13.4 104 15-167 1-104 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.3E-28 4.5E-33 187.0 11.7 99 15-162 4-102 (105)
3 3osg_A MYB21; transcription-DN 100.0 4.9E-28 1.7E-32 189.9 14.0 107 11-167 7-113 (126)
4 1h8a_C AMV V-MYB, MYB transfor 99.9 1.6E-27 5.4E-32 187.3 11.8 102 11-161 23-124 (128)
5 3zqc_A MYB3; transcription-DNA 99.9 9.5E-28 3.2E-32 189.4 10.5 101 15-164 2-102 (131)
6 1h89_C C-MYB, MYB proto-oncoge 99.9 2.5E-26 8.7E-31 186.6 5.8 101 13-161 4-104 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 2.2E-25 7.6E-30 181.1 11.1 101 12-161 55-155 (159)
8 2cjj_A Radialis; plant develop 99.8 1.1E-20 3.9E-25 140.4 9.3 72 11-82 4-75 (93)
9 2cqq_A RSGI RUH-037, DNAJ homo 99.8 6.7E-20 2.3E-24 130.1 7.1 70 9-80 2-71 (72)
10 1h8a_C AMV V-MYB, MYB transfor 99.8 2.5E-19 8.4E-24 140.4 5.9 73 44-161 1-73 (128)
11 2cu7_A KIAA1915 protein; nucle 99.8 2.2E-18 7.6E-23 122.3 8.7 65 112-178 7-71 (72)
12 2dim_A Cell division cycle 5-l 99.7 3.3E-17 1.1E-21 115.5 6.0 53 10-65 4-56 (70)
13 2cqr_A RSGI RUH-043, DNAJ homo 99.7 6.9E-17 2.4E-21 114.8 5.7 55 13-67 16-70 (73)
14 1wgx_A KIAA1903 protein; MYB D 99.7 2.1E-16 7E-21 112.0 7.2 53 13-65 6-58 (73)
15 1guu_A C-MYB, MYB proto-oncoge 99.6 2.6E-16 8.8E-21 104.5 7.0 48 114-162 3-50 (52)
16 1x41_A Transcriptional adaptor 99.6 2.2E-16 7.6E-21 108.1 6.4 49 113-162 7-55 (60)
17 2elk_A SPCC24B10.08C protein; 99.6 2.2E-16 7.6E-21 107.4 6.2 48 114-162 9-57 (58)
18 1gvd_A MYB proto-oncogene prot 99.6 4.2E-16 1.4E-20 103.6 6.1 47 114-161 3-49 (52)
19 2yum_A ZZZ3 protein, zinc fing 99.6 2.8E-16 9.6E-21 112.1 5.7 52 113-165 7-63 (75)
20 4eef_G F-HB80.4, designed hema 99.6 8.1E-17 2.8E-21 113.1 1.0 49 14-62 19-67 (74)
21 2xag_B REST corepressor 1; ami 99.6 4.1E-16 1.4E-20 145.1 5.8 51 114-166 380-430 (482)
22 2d9a_A B-MYB, MYB-related prot 99.6 1.1E-15 3.7E-20 104.5 6.0 50 112-162 6-55 (60)
23 1w0t_A Telomeric repeat bindin 99.6 1.7E-15 5.9E-20 101.0 6.7 48 114-162 2-51 (53)
24 3sjm_A Telomeric repeat-bindin 99.6 2.8E-15 9.5E-20 104.0 7.3 50 112-162 9-60 (64)
25 1ign_A Protein (RAP1); RAP1,ye 99.6 8.5E-15 2.9E-19 124.6 11.8 135 14-164 7-200 (246)
26 1ity_A TRF1; helix-turn-helix, 99.6 4E-15 1.4E-19 104.5 7.6 53 110-163 6-60 (69)
27 2yus_A SWI/SNF-related matrix- 99.6 2.3E-15 7.9E-20 108.6 5.9 46 113-160 17-62 (79)
28 2dim_A Cell division cycle 5-l 99.5 5.7E-15 2E-19 103.9 6.1 49 112-161 7-55 (70)
29 1ofc_X ISWI protein; nuclear p 99.5 2.4E-14 8.3E-19 126.6 8.9 130 16-166 111-278 (304)
30 2yum_A ZZZ3 protein, zinc fing 99.5 2.5E-14 8.5E-19 101.9 6.8 57 10-66 3-61 (75)
31 1x41_A Transcriptional adaptor 99.5 4.1E-14 1.4E-18 96.7 7.3 53 10-65 3-55 (60)
32 2cqr_A RSGI RUH-043, DNAJ homo 99.5 3.3E-14 1.1E-18 100.9 6.2 49 112-161 16-67 (73)
33 2d9a_A B-MYB, MYB-related prot 99.5 8.3E-14 2.8E-18 95.0 7.2 53 10-65 3-55 (60)
34 2din_A Cell division cycle 5-l 99.5 5.7E-14 1.9E-18 97.7 6.4 53 112-167 7-59 (66)
35 2ltp_A Nuclear receptor corepr 99.2 4.1E-15 1.4E-19 109.6 0.0 53 112-166 14-66 (89)
36 1guu_A C-MYB, MYB proto-oncoge 99.5 8.9E-14 3.1E-18 92.1 6.3 48 15-65 3-50 (52)
37 1gvd_A MYB proto-oncogene prot 99.4 1.2E-13 4.1E-18 91.6 5.7 48 15-65 3-50 (52)
38 2ckx_A NGTRF1, telomere bindin 99.4 3.8E-13 1.3E-17 97.7 8.1 50 116-165 2-54 (83)
39 3sjm_A Telomeric repeat-bindin 99.4 3.5E-13 1.2E-17 93.3 7.1 50 13-65 9-60 (64)
40 2elk_A SPCC24B10.08C protein; 99.4 4.6E-13 1.6E-17 90.9 7.5 47 15-64 9-56 (58)
41 2llk_A Cyclin-D-binding MYB-li 99.4 2.2E-13 7.7E-18 96.6 6.1 46 111-159 20-65 (73)
42 2din_A Cell division cycle 5-l 99.4 3.7E-13 1.3E-17 93.5 7.0 58 11-73 5-62 (66)
43 2eqr_A N-COR1, N-COR, nuclear 99.4 5.3E-13 1.8E-17 91.5 7.4 47 110-158 8-54 (61)
44 1w0t_A Telomeric repeat bindin 99.4 6.2E-13 2.1E-17 88.5 6.9 48 15-65 2-51 (53)
45 2cu7_A KIAA1915 protein; nucle 99.4 8.4E-13 2.9E-17 93.3 7.6 53 10-66 4-56 (72)
46 2yus_A SWI/SNF-related matrix- 99.4 1.2E-13 4.1E-18 99.5 2.9 49 13-65 16-65 (79)
47 1gv2_A C-MYB, MYB proto-oncoge 99.4 6E-13 2.1E-17 100.4 6.1 47 114-161 4-50 (105)
48 2cjj_A Radialis; plant develop 99.4 9.6E-13 3.3E-17 97.5 6.9 51 115-166 9-62 (93)
49 2aje_A Telomere repeat-binding 99.4 1.6E-12 5.4E-17 98.3 8.0 55 110-164 9-66 (105)
50 2juh_A Telomere binding protei 99.4 7.6E-13 2.6E-17 102.4 6.3 86 12-139 14-103 (121)
51 1ity_A TRF1; helix-turn-helix, 99.4 2.1E-12 7.3E-17 90.5 7.6 52 11-65 6-59 (69)
52 2roh_A RTBP1, telomere binding 99.3 3.2E-12 1.1E-16 99.0 8.6 81 12-134 28-113 (122)
53 2k9n_A MYB24; R2R3 domain, DNA 99.3 1.3E-12 4.4E-17 99.1 6.2 46 115-161 2-47 (107)
54 2juh_A Telomere binding protei 99.3 2.6E-12 8.7E-17 99.4 7.7 56 110-165 13-71 (121)
55 2roh_A RTBP1, telomere binding 99.3 6.4E-12 2.2E-16 97.3 9.9 56 110-165 27-85 (122)
56 3osg_A MYB21; transcription-DN 99.3 2.8E-12 9.6E-17 100.0 6.7 49 112-162 9-57 (126)
57 3zqc_A MYB3; transcription-DNA 99.3 1.9E-12 6.7E-17 101.5 5.6 47 115-162 3-49 (131)
58 2iw5_B Protein corest, REST co 99.3 1.6E-12 5.4E-17 109.8 4.9 52 113-166 132-183 (235)
59 2eqr_A N-COR1, N-COR, nuclear 99.2 2.5E-11 8.5E-16 83.1 7.8 47 13-63 10-56 (61)
60 1wgx_A KIAA1903 protein; MYB D 99.2 8.8E-12 3E-16 88.1 5.1 45 115-160 9-56 (73)
61 2llk_A Cyclin-D-binding MYB-li 99.2 1.5E-11 5.2E-16 87.1 5.6 52 9-65 17-68 (73)
62 1x58_A Hypothetical protein 49 99.2 2.6E-11 8.9E-16 82.7 5.7 46 114-160 8-55 (62)
63 2cqq_A RSGI RUH-037, DNAJ homo 99.2 3.7E-11 1.3E-15 84.9 6.5 45 114-160 8-55 (72)
64 2ckx_A NGTRF1, telomere bindin 99.1 2.9E-10 1E-14 82.4 8.5 48 16-66 1-52 (83)
65 2ltp_A Nuclear receptor corepr 98.7 7.8E-12 2.7E-16 91.9 0.0 54 9-66 10-63 (89)
66 2y9y_A Imitation switch protei 99.1 3.6E-10 1.2E-14 102.1 10.6 132 16-166 124-294 (374)
67 2yqk_A Arginine-glutamic acid 99.1 4.1E-10 1.4E-14 77.5 7.7 44 113-157 8-51 (63)
68 4eef_G F-HB80.4, designed hema 99.0 3.6E-11 1.2E-15 84.4 0.2 43 115-158 21-66 (74)
69 1ign_A Protein (RAP1); RAP1,ye 99.0 1.6E-10 5.3E-15 98.5 4.1 51 113-164 7-62 (246)
70 2crg_A Metastasis associated p 99.0 8.4E-10 2.9E-14 77.5 7.0 44 114-158 8-51 (70)
71 4b4c_A Chromodomain-helicase-D 99.0 2.3E-08 7.7E-13 83.8 15.4 148 14-164 6-197 (211)
72 2yqk_A Arginine-glutamic acid 98.9 2.3E-09 7.9E-14 73.7 7.2 50 10-63 4-54 (63)
73 1x58_A Hypothetical protein 49 98.9 4.4E-09 1.5E-13 71.7 6.6 52 10-65 3-57 (62)
74 2crg_A Metastasis associated p 98.9 5.6E-09 1.9E-13 73.3 7.1 50 10-63 3-53 (70)
75 2aje_A Telomere repeat-binding 98.9 1.1E-08 3.7E-13 77.2 9.1 51 12-65 10-64 (105)
76 1irz_A ARR10-B; helix-turn-hel 98.8 3E-08 1E-12 68.1 7.6 54 112-166 5-62 (64)
77 4a69_C Nuclear receptor corepr 98.7 1.2E-08 4.3E-13 75.5 6.0 42 114-157 43-84 (94)
78 4a69_C Nuclear receptor corepr 98.7 2.5E-08 8.6E-13 73.8 6.4 45 15-63 43-87 (94)
79 2iw5_B Protein corest, REST co 98.7 1.7E-08 5.9E-13 85.2 5.9 49 13-65 131-179 (235)
80 1fex_A TRF2-interacting telome 98.2 1.2E-06 4.2E-11 59.2 4.8 47 115-161 3-57 (59)
81 1ug2_A 2610100B20RIK gene prod 98.2 9.7E-06 3.3E-10 58.9 9.1 59 9-68 27-85 (95)
82 3hm5_A DNA methyltransferase 1 98.2 4.1E-06 1.4E-10 61.6 6.7 51 115-167 31-86 (93)
83 2xag_B REST corepressor 1; ami 98.1 3.4E-06 1.2E-10 78.6 6.1 46 14-63 379-424 (482)
84 3hm5_A DNA methyltransferase 1 98.1 1.2E-05 4.2E-10 59.0 7.7 50 16-69 31-85 (93)
85 1fex_A TRF2-interacting telome 98.0 1E-05 3.5E-10 54.6 6.2 51 15-65 2-58 (59)
86 2xb0_X Chromo domain-containin 98.0 6.1E-05 2.1E-09 65.5 11.1 50 15-65 3-54 (270)
87 1ug2_A 2610100B20RIK gene prod 97.9 2.7E-05 9.1E-10 56.6 6.4 51 115-166 34-86 (95)
88 2lr8_A CAsp8-associated protei 96.9 4.2E-06 1.4E-10 57.6 0.0 54 11-66 10-63 (70)
89 2lr8_A CAsp8-associated protei 96.9 4.3E-06 1.5E-10 57.6 0.0 49 115-165 15-65 (70)
90 1ofc_X ISWI protein; nuclear p 97.3 0.00051 1.7E-08 60.6 7.0 49 115-164 111-159 (304)
91 4iej_A DNA methyltransferase 1 97.2 0.0013 4.3E-08 48.2 7.7 50 16-69 31-85 (93)
92 2ebi_A DNA binding protein GT- 97.1 0.00068 2.3E-08 48.6 4.9 54 15-68 4-67 (86)
93 2ebi_A DNA binding protein GT- 97.0 0.00085 2.9E-08 48.1 5.2 53 114-167 4-69 (86)
94 4iej_A DNA methyltransferase 1 97.0 0.0019 6.5E-08 47.3 6.9 51 116-167 32-86 (93)
95 4b4c_A Chromodomain-helicase-D 96.1 0.0076 2.6E-07 49.8 5.8 51 114-164 7-60 (211)
96 1irz_A ARR10-B; helix-turn-hel 94.8 0.1 3.5E-06 35.4 6.6 51 14-65 6-58 (64)
97 2y9y_A Imitation switch protei 93.6 0.11 3.8E-06 46.8 6.3 50 115-165 124-174 (374)
98 2xb0_X Chromo domain-containin 86.8 0.51 1.8E-05 40.7 3.9 30 15-47 168-197 (270)
99 2hzd_A Transcriptional enhance 81.8 3 0.0001 29.5 5.3 48 115-162 7-73 (82)
100 2ecc_A Homeobox and leucine zi 80.8 7.4 0.00025 26.9 7.1 52 10-62 2-53 (76)
101 2li6_A SWI/SNF chromatin-remod 67.5 6 0.0002 29.4 4.1 39 125-164 54-99 (116)
102 2lm1_A Lysine-specific demethy 59.9 17 0.00057 26.3 5.3 30 136-166 67-100 (107)
103 2dmu_A Homeobox protein goosec 59.9 33 0.0011 22.4 6.9 52 10-62 6-57 (70)
104 2p1m_A SKP1-like protein 1A; F 59.7 4.6 0.00016 31.5 2.3 20 41-60 118-137 (160)
105 2jrz_A Histone demethylase jar 57.0 12 0.00043 27.6 4.2 42 124-166 44-96 (117)
106 2cxy_A BAF250B subunit, HBAF25 55.6 16 0.00055 27.3 4.7 42 124-166 55-107 (125)
107 1kkx_A Transcription regulator 55.2 11 0.00039 28.2 3.7 30 136-166 71-100 (123)
108 2e1o_A Homeobox protein PRH; D 52.8 45 0.0015 21.7 7.5 50 13-63 9-58 (70)
109 1c20_A DEAD ringer protein; DN 50.9 22 0.00075 26.6 4.8 43 124-167 56-110 (128)
110 2cra_A Homeobox protein HOX-B1 49.6 51 0.0018 21.5 7.5 50 13-63 9-58 (70)
111 3v7d_A Suppressor of kinetocho 49.6 7.2 0.00025 30.8 1.9 20 41-60 126-145 (169)
112 2cuf_A FLJ21616 protein; homeo 49.1 50 0.0017 23.0 6.2 52 13-65 9-75 (95)
113 2eqy_A RBP2 like, jumonji, at 48.9 52 0.0018 24.4 6.5 43 124-167 46-99 (122)
114 2dms_A Homeobox protein OTX2; 48.9 58 0.002 21.8 7.4 51 12-63 8-58 (80)
115 2da2_A Alpha-fetoprotein enhan 48.2 54 0.0018 21.3 7.5 51 12-63 8-58 (70)
116 2hzd_A Transcriptional enhance 48.1 42 0.0014 23.5 5.4 51 14-64 5-72 (82)
117 2djn_A Homeobox protein DLX-5; 46.9 57 0.002 21.2 6.8 51 12-63 8-58 (70)
118 1ig6_A MRF-2, modulator recogn 46.4 12 0.0004 27.2 2.5 28 136-164 56-88 (107)
119 2dmq_A LIM/homeobox protein LH 44.5 68 0.0023 21.4 7.5 51 12-63 8-58 (80)
120 2da1_A Alpha-fetoprotein enhan 44.4 62 0.0021 20.9 7.8 50 13-63 9-58 (70)
121 3cz6_A DNA-binding protein RAP 43.8 31 0.0011 27.4 4.7 19 9-27 108-126 (168)
122 2rq5_A Protein jumonji; develo 43.5 24 0.00081 26.4 3.9 42 124-166 46-99 (121)
123 2cue_A Paired box protein PAX6 43.5 71 0.0024 21.4 6.9 49 12-61 8-56 (80)
124 2jxj_A Histone demethylase jar 43.2 14 0.00048 26.1 2.4 28 136-164 59-90 (96)
125 2e19_A Transcription factor 8; 43.0 66 0.0023 20.8 5.9 52 10-62 2-53 (64)
126 2kk0_A AT-rich interactive dom 41.8 34 0.0012 26.2 4.6 42 124-166 68-121 (145)
127 3i4p_A Transcriptional regulat 41.1 44 0.0015 25.5 5.3 110 22-159 4-122 (162)
128 2ast_A S-phase kinase-associat 39.6 8.2 0.00028 29.9 0.7 21 41-61 119-139 (159)
129 2dn0_A Zinc fingers and homeob 38.5 84 0.0029 20.8 7.4 50 13-63 10-59 (76)
130 2o8x_A Probable RNA polymerase 34.7 78 0.0027 19.7 5.0 47 116-166 15-61 (70)
131 1puf_A HOX-1.7, homeobox prote 34.1 1E+02 0.0035 20.4 7.1 51 10-61 12-62 (77)
132 2lc3_A E3 ubiquitin-protein li 33.9 24 0.00083 24.8 2.3 51 112-163 11-79 (88)
133 2da3_A Alpha-fetoprotein enhan 33.4 88 0.003 20.7 5.3 49 14-63 20-68 (80)
134 2da6_A Hepatocyte nuclear fact 33.0 96 0.0033 22.4 5.6 37 12-48 7-43 (102)
135 1kkx_A Transcription regulator 32.8 60 0.002 24.2 4.6 45 24-68 51-99 (123)
136 2ys8_A RAB-related GTP-binding 32.5 1.2E+02 0.0041 20.8 7.4 47 15-67 9-55 (90)
137 2dmt_A Homeobox protein BARH-l 31.8 1.1E+02 0.0039 20.3 7.0 49 14-63 20-68 (80)
138 1akh_A Protein (mating-type pr 31.6 95 0.0033 19.3 5.2 48 13-61 7-54 (61)
139 1ig7_A Homeotic protein MSX-1; 31.5 93 0.0032 19.2 6.6 48 14-62 3-50 (58)
140 2hdd_A Protein (engrailed home 31.0 99 0.0034 19.3 5.7 48 13-61 5-52 (61)
141 1bw5_A ISL-1HD, insulin gene e 30.9 1E+02 0.0036 19.6 6.2 49 13-62 5-53 (66)
142 1du6_A PBX1, homeobox protein 30.6 97 0.0033 19.5 4.9 49 13-62 5-56 (64)
143 2e1c_A Putative HTH-type trans 30.5 1E+02 0.0034 23.8 5.8 43 18-65 25-67 (171)
144 2jrz_A Histone demethylase jar 30.5 54 0.0018 24.0 4.0 48 23-70 42-97 (117)
145 2h1k_A IPF-1, pancreatic and d 29.6 1.1E+02 0.0037 19.3 6.0 49 13-62 5-53 (63)
146 2k40_A Homeobox expressed in E 29.6 1.1E+02 0.0038 19.5 5.7 50 13-63 3-52 (67)
147 1jgg_A Segmentation protein EV 29.2 1.1E+02 0.0036 19.1 6.0 48 14-62 4-51 (60)
148 1yz8_P Pituitary homeobox 2; D 29.2 1.2E+02 0.0039 19.5 6.6 49 13-62 5-53 (68)
149 2dbb_A Putative HTH-type trans 28.5 1.6E+02 0.0054 21.6 6.5 42 19-65 8-49 (151)
150 1zq3_P PRD-4, homeotic bicoid 27.3 1.3E+02 0.0043 19.4 5.6 49 13-62 4-52 (68)
151 3a02_A Homeobox protein arista 27.1 1.2E+02 0.004 18.9 5.3 47 15-62 3-49 (60)
152 2ly9_A Zinc fingers and homeob 26.5 1.4E+02 0.0046 19.4 6.3 51 12-63 7-57 (74)
153 2l7z_A Homeobox protein HOX-A1 25.8 1.4E+02 0.0049 19.4 5.6 51 12-63 8-58 (73)
154 1mnm_C Protein (MAT alpha-2 tr 25.6 1.6E+02 0.0054 19.9 6.2 51 11-62 27-80 (87)
155 1ku3_A Sigma factor SIGA; heli 25.4 1.4E+02 0.0047 19.1 5.0 46 117-165 11-59 (73)
156 2dmn_A Homeobox protein TGIF2L 25.0 1.6E+02 0.0055 19.8 7.0 50 13-63 9-61 (83)
157 1fjl_A Paired protein; DNA-bin 24.6 1.6E+02 0.0054 19.6 6.3 49 13-62 20-68 (81)
158 2cyy_A Putative HTH-type trans 23.6 1.8E+02 0.006 21.4 6.0 42 19-65 6-47 (151)
159 3a03_A T-cell leukemia homeobo 23.4 1.4E+02 0.0046 18.4 5.2 45 16-61 2-46 (56)
160 3hug_A RNA polymerase sigma fa 22.8 1.4E+02 0.0047 20.1 4.8 42 122-166 42-83 (92)
161 2dk8_A DNA-directed RNA polyme 22.6 1.9E+02 0.0066 19.9 6.9 44 20-65 12-56 (81)
162 3i4p_A Transcriptional regulat 21.9 1E+02 0.0036 23.2 4.4 39 120-160 3-41 (162)
163 2k0m_A Uncharacterized protein 21.6 1.4E+02 0.0047 21.6 4.7 19 116-134 36-54 (104)
164 4e97_A Lysozyme; hydrolase, al 21.4 64 0.0022 25.4 3.1 33 134-166 146-178 (187)
165 2gu0_A Nonstructural protein 2 21.4 25 0.00085 30.1 0.6 57 116-183 193-258 (312)
166 1k61_A Mating-type protein alp 20.8 1.6E+02 0.0054 18.2 6.0 47 15-62 2-51 (60)
167 2p7v_B Sigma-70, RNA polymeras 20.7 1.3E+02 0.0045 18.9 4.1 32 132-166 24-55 (68)
168 1nk2_P Homeobox protein VND; h 20.2 1.9E+02 0.0066 18.9 6.9 50 13-63 11-60 (77)
169 2cg4_A Regulatory protein ASNC 20.0 2E+02 0.0067 21.2 5.6 39 23-65 10-48 (152)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.96 E-value=6e-29 Score=189.83 Aligned_cols=104 Identities=19% Similarity=0.415 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccC
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESG 94 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~~ 94 (232)
.+.||+|||++|.++|.+||.+ +|..||.+|||||..||++||..+++ |.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~------------p~--------------- 50 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAK---DWIRISQLMITRNPRQCRERWNNYIN------------PA--------------- 50 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTTTSCHHHHHHHHHHHSS------------SC---------------
T ss_pred CCCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcCCCCHHHHHHHHHHHHc------------cc---------------
Confidence 3689999999999999999864 49999999999999999999999876 22
Q ss_pred CccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHccc
Q 026855 95 ASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSV 167 (232)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~~ 167 (232)
.+.++||+|||.+|+.++.+||. +|..||+ +|+|||+.||++||..+.++..+.
T Consensus 51 -----------------i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 51 -----------------LRTDPWSPEEDMLLDQKYAEYGP-KWNKISK-FLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp -----------------CTTCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred -----------------ccccccCHHHHHHHHHHHHHhCc-CHHHHHH-HCCCCCHHHHHHHHHHHHhhHHHh
Confidence 33469999999999999999999 9999999 899999999999999887776543
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.96 E-value=1.3e-28 Score=187.04 Aligned_cols=99 Identities=24% Similarity=0.546 Sum_probs=89.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccC
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESG 94 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~~ 94 (232)
.++||+|||++|.++|.+||.+ +|..||++|||||..||++||..+++ |
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p---------------- 52 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------P---------------- 52 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTC------------C----------------
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhcCCCHHHHHHHHHhccC------------C----------------
Confidence 6789999999999999999864 49999999999999999999999876 2
Q ss_pred CccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855 95 ASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL 162 (232)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~ 162 (232)
..+.++||+|||.+|+.++.+||. +|..||+ +|||||+.||++||+.+++
T Consensus 53 ----------------~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 53 ----------------EVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp ----------------CCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHTC
T ss_pred ----------------cccccCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHHHHHh
Confidence 234468999999999999999998 9999999 8999999999999987644
No 3
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.95 E-value=4.9e-28 Score=189.93 Aligned_cols=107 Identities=24% Similarity=0.512 Sum_probs=94.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcc
Q 026855 11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRV 90 (232)
Q Consensus 11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~ 90 (232)
.+...+.||+|||++|.++|.+||. +|..||..|||||..||++||..+++ |
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p------------ 58 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYLA------------P------------ 58 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHTS------------T------------
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhcc------------c------------
Confidence 4456889999999999999999986 39999999999999999999999876 2
Q ss_pred cccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHccc
Q 026855 91 AESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSV 167 (232)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~~ 167 (232)
..+.++||+|||++|++++.+||. +|..||+ +|+|||..||++||..+++++...
T Consensus 59 --------------------~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 59 --------------------SISHTPWTAEEDALLVQKIQEYGR-QWAIIAK-FFPGRTDIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp --------------------TSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHHHHHHTTC-
T ss_pred --------------------ccccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHhcCCC
Confidence 233468999999999999999998 9999999 899999999999999887776543
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.95 E-value=1.6e-27 Score=187.32 Aligned_cols=102 Identities=25% Similarity=0.533 Sum_probs=90.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcc
Q 026855 11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRV 90 (232)
Q Consensus 11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~ 90 (232)
++...++||+|||++|.++|.+||.+ +|..||.+|||||..||++||..+++ |
T Consensus 23 p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p------------ 75 (128)
T 1h8a_C 23 PELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKGRIGKQCRERWHNHLN------------P------------ 75 (128)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSSSCCHHHHHHHHHHTTC------------S------------
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhcCCcHHHHHHHHHHhcc------------c------------
Confidence 34557899999999999999999864 49999999999999999999999876 2
Q ss_pred cccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855 91 AESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161 (232)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~ 161 (232)
..+.++||+|||.+|++++.+||. +|..||+ +|||||+.||++||..++
T Consensus 76 --------------------~~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 76 --------------------EVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp --------------------SSCCSCCCHHHHHHHHHHHHHHCS-CHHHHGG-GSTTCCHHHHHHHHHTTT
T ss_pred --------------------ccccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 234468999999999999999998 9999999 899999999999987653
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.95 E-value=9.5e-28 Score=189.41 Aligned_cols=101 Identities=21% Similarity=0.383 Sum_probs=90.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccC
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESG 94 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~~ 94 (232)
.+.||+|||++|.++|..||.+ +|..||.+|||||..||++||..+++ |
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p---------------- 50 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQ---NWPRITSFLPNRSPKQCRERWFNHLD------------P---------------- 50 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSC---CGGGGTTSCTTSCHHHHHHHHHHHTS------------T----------------
T ss_pred CCCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHCCCCHHHHHHHHhhccC------------c----------------
Confidence 4689999999999999999854 39999999999999999999999886 2
Q ss_pred CccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855 95 ASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRM 164 (232)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~ 164 (232)
..+.++||+|||.+|++++.+||. +|..||+ +|+|||+.||++||+.++.+.
T Consensus 51 ----------------~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 51 ----------------AVVKHAWTPEEDETIFRNYLKLGS-KWSVIAK-LIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp ----------------TCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTT-TSTTCCHHHHHHHHHHTTGGG
T ss_pred ----------------cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHH
Confidence 233468999999999999999998 9999999 899999999999998886554
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.92 E-value=2.5e-26 Score=186.61 Aligned_cols=101 Identities=26% Similarity=0.509 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAE 92 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~ 92 (232)
...+.||+|||++|.++|.+||.+ +|..||++|||||..||++||..+++ |
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p-------------- 54 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN------------P-------------- 54 (159)
T ss_dssp ------------------------------------------CHHHHHHTTTC------------T--------------
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHccC------------C--------------
Confidence 346789999999999999999854 49999999999999999999998876 2
Q ss_pred cCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855 93 SGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161 (232)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~ 161 (232)
..+.++||+|||.+|+.++.+||.++|..||. ++++||+.||++||..|+
T Consensus 55 ------------------~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 55 ------------------ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp ------------------TCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHHTT
T ss_pred ------------------CcCCCCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHHHh
Confidence 12346899999999999999999878999999 899999999999998875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.92 E-value=2.2e-25 Score=181.05 Aligned_cols=101 Identities=24% Similarity=0.533 Sum_probs=89.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVA 91 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~ 91 (232)
....++||+|||++|.+++..||.+ +|..||.+|||||..||++||..+++ |
T Consensus 55 ~~~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p------------- 106 (159)
T 1h89_C 55 ELIKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------P------------- 106 (159)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTSTTCCHHHHHHHHHHTTC------------T-------------
T ss_pred CcCCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcCCCCHHHHHHHHHHHhC------------c-------------
Confidence 3457899999999999999999853 49999999999999999999998875 2
Q ss_pred ccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855 92 ESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161 (232)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~ 161 (232)
..+.++||+|||.+|++++.+||. +|..||+ +|||||+.||++||+.++
T Consensus 107 -------------------~~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 107 -------------------EVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp -------------------TSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHTTT
T ss_pred -------------------cccccCCChHHHHHHHHHHHHHCC-CHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 234468999999999999999999 9999999 899999999999988653
No 8
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.83 E-value=1.1e-20 Score=140.36 Aligned_cols=72 Identities=38% Similarity=0.804 Sum_probs=61.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 026855 11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYED 82 (232)
Q Consensus 11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~ 82 (232)
++++.+.||+|||++|++|+++||.++++||.+||++|||||..||++||..++.++..|++|.+.+|.|..
T Consensus 4 ~~~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~ 75 (93)
T 2cjj_A 4 TRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRT 75 (93)
T ss_dssp ----CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 345578999999999999999999999999999999999999999999999999999999999999998864
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.80 E-value=6.7e-20 Score=130.10 Aligned_cols=70 Identities=36% Similarity=0.653 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 026855 9 SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGY 80 (232)
Q Consensus 9 ~~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~ 80 (232)
++++.....||.||+++|++||++||+++++||++||++| |||+.||+.||+.|++++ .+++|.+.+|.|
T Consensus 2 ~~~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~ 71 (72)
T 2cqq_A 2 SSGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSS 71 (72)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCC
Confidence 4556668899999999999999999999999999999998 999999999999999985 678999999976
No 10
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.77 E-value=2.5e-19 Score=140.45 Aligned_cols=73 Identities=22% Similarity=0.471 Sum_probs=45.8
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccCCccCCCCCCCCcccccccCCCCCCHHHHH
Q 026855 44 IARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHR 123 (232)
Q Consensus 44 IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~ 123 (232)
||+.|||||..||++||..+++ | ..+.++||+|||+
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~------------p--------------------------------~~~k~~Wt~eED~ 36 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLN------------P--------------------------------ELNKGPWTKEEDQ 36 (128)
T ss_dssp ---------------------C------------T--------------------------------TCCCSCCCHHHHH
T ss_pred CccccCCCCHHHHHHHHHHhhC------------C--------------------------------CCCCCCCCHHHHH
Confidence 8999999999999999998876 2 2334689999999
Q ss_pred HHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855 124 LFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161 (232)
Q Consensus 124 ~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~ 161 (232)
+|++++.+||.++|..||. +|+|||..||+.||.+|+
T Consensus 37 ~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 37 RVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp HHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhc
Confidence 9999999999878999999 899999999999998875
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.76 E-value=2.2e-18 Score=122.26 Aligned_cols=65 Identities=38% Similarity=0.579 Sum_probs=59.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHccccCCCCCCCCCc
Q 026855 112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHD 178 (232)
Q Consensus 112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~~~k~~kr~s~~~ 178 (232)
.+.++||+|||++|++++.+||. +|..||+ +|+|||..||++||++|++++.+....+.+.+||+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 45579999999999999999999 9999999 89999999999999999999887777777888875
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-17 Score=115.53 Aligned_cols=53 Identities=23% Similarity=0.488 Sum_probs=47.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
.++...+.||+|||++|.++|.+||.+ +|..||.+|+|||..||++||..+|+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 344557899999999999999999854 49999999999999999999999876
No 13
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.66 E-value=6.9e-17 Score=114.81 Aligned_cols=55 Identities=40% Similarity=0.670 Sum_probs=51.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDL 67 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~ 67 (232)
.....||.+||++|+.||++||.+++++|.+||.+|||||..||+.||..|+.|+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~ 70 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGP 70 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcc
Confidence 4577899999999999999999888999999999999999999999999998753
No 14
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=2.1e-16 Score=111.95 Aligned_cols=53 Identities=26% Similarity=0.530 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
+....||++|+++|++||+.||.++|+||++||++|||||++||++||..++.
T Consensus 6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 44678999999999999999999999999999999999999999999999865
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=2.6e-16 Score=104.53 Aligned_cols=48 Identities=29% Similarity=0.418 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL 162 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~ 162 (232)
.++||+|||.+|++++.+||.++|..||+ +|++||+.||++||++|+.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999999999 8999999999999998863
No 16
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2.2e-16 Score=108.06 Aligned_cols=49 Identities=27% Similarity=0.571 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855 113 KGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL 162 (232)
Q Consensus 113 ~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~ 162 (232)
...+||+|||++|+++|.+||.++|..||+ +|++||+.||++||++|+.
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHHHHcc
Confidence 446899999999999999999769999999 8999999999999998864
No 17
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.64 E-value=2.2e-16 Score=107.41 Aligned_cols=48 Identities=29% Similarity=0.526 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC-CCCHHHHHHHHHHHHH
Q 026855 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV-SRTPTQVASHAQKYFL 162 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~-~RT~~q~~~~~~ky~~ 162 (232)
..+||+|||++|+++|.+||.++|..||+ +|+ +||+.||+.||++||.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHHHHcc
Confidence 35899999999999999999779999999 899 9999999999999873
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=4.2e-16 Score=103.57 Aligned_cols=47 Identities=26% Similarity=0.483 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~ 161 (232)
.++||+|||++|++++.+||.++|..||. +|+|||+.||++||++|+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence 46899999999999999999878999999 899999999999999875
No 19
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=112.10 Aligned_cols=52 Identities=37% Similarity=0.591 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-----CCHHHHHhhhcCCCCHHHHHHHHHHHHHHHc
Q 026855 113 KGVPWTAEEHRLFLIGLEKYGK-----GDWRSISRNAVVSRTPTQVASHAQKYFLRMN 165 (232)
Q Consensus 113 ~~~~WT~eEd~~l~~~l~~~G~-----g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~ 165 (232)
..++||+|||++|+++|.+||. ++|..||+ +|+|||..||++||++|+.++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHH
Confidence 4468999999999999999995 59999999 8999999999999999987754
No 20
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.61 E-value=8.1e-17 Score=113.15 Aligned_cols=49 Identities=31% Similarity=0.653 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
++..||.+|+++|++||++||+++|+||++||+.|||||+.||+.+|..
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999963
No 21
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.60 E-value=4.1e-16 Score=145.15 Aligned_cols=51 Identities=31% Similarity=0.543 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
..+||+||+.+|++||.+||+ +|..||+ +|+|||..||++||++|.++++.
T Consensus 380 ~~~WT~eE~~~f~~al~~yGk-dw~~IA~-~VgTKT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTT-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTTH
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HhCCCCHHHHHHHHHHHHHHhCh
Confidence 568999999999999999999 9999999 89999999999999998776554
No 22
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=1.1e-15 Score=104.48 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=45.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855 112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL 162 (232)
Q Consensus 112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~ 162 (232)
.+.++||+|||++|++++.+||.++|..||+ +|++||+.||++||++|+.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHcC
Confidence 4456899999999999999999669999999 8999999999999988753
No 23
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=1.7e-15 Score=101.01 Aligned_cols=48 Identities=25% Similarity=0.428 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHH
Q 026855 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV--SRTPTQVASHAQKYFL 162 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~--~RT~~q~~~~~~ky~~ 162 (232)
.++||+|||++|+++|.+||.++|..||. +++ +||+.||++||.+|++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHHc
Confidence 35899999999999999999779999999 799 9999999999998753
No 24
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.59 E-value=2.8e-15 Score=103.97 Aligned_cols=50 Identities=30% Similarity=0.548 Sum_probs=44.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHH
Q 026855 112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV--SRTPTQVASHAQKYFL 162 (232)
Q Consensus 112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~--~RT~~q~~~~~~ky~~ 162 (232)
.+..+||+|||++|+++|.+||.++|..||+ +++ +||+.||+.||..|.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999889999999 665 9999999999988743
No 25
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.59 E-value=8.5e-15 Score=124.63 Aligned_cols=135 Identities=16% Similarity=0.238 Sum_probs=91.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCC--CCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 026855 14 TSSSWTREEDKLFERALVTFPEE--TPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVA 91 (232)
Q Consensus 14 ~~~~WT~eEd~~L~~av~~~p~~--~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~ 91 (232)
..+.||+|||++|.+++.+||.. +...|..||.+|||||..||+.||..+|..- ++-. |..+.+...+..
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~--ln~v------y~~ded~~Li~d 78 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR--LEYV------YEVDKFGKLVRD 78 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG--CCCE------ECBCTTSCBCBC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh--cccc------cccCcchhhhhc
Confidence 46799999999999999999863 2344999999999999999999999988631 1100 111111000000
Q ss_pred ccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHH-h--------------------------------C-----
Q 026855 92 ESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEK-Y--------------------------------G----- 133 (232)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~-~--------------------------------G----- 133 (232)
.. +...... ... ... ...||.|||-.|...+.+ | |
T Consensus 79 ~~-Gn~ikis----~lp-~si-K~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (246)
T 1ign_A 79 DD-GNLIKTK----VLP-PSI-KRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVP 151 (246)
T ss_dssp TT-SCBCEES----SCC-CCS-CCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC----------------------
T ss_pred cC-CCceeee----ccC-ccc-cCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccc
Confidence 00 1111000 001 111 247999999999999987 2 1
Q ss_pred -------------------CCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855 134 -------------------KGDWRSISRNAVVSRTPTQVASHAQKYFLRM 164 (232)
Q Consensus 134 -------------------~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~ 164 (232)
.+.|+.||+ ++|+||....|+||.|++...
T Consensus 152 ~~~~~f~~~~~~~~~gp~~~~~fk~ia~-~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 152 GSEPNFAAYRTQSRRGPIAREFFKHFAE-EHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp ---------CCCCCCCCCCTTHHHHHHH-HTTTSCHHHHHHHHHHTHHHH
T ss_pred cCCcchhhhccccccCcchHHHHHHHHH-HCCCCChhhHHHHHHHHHhhc
Confidence 136999999 899999999999999987665
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=4e-15 Score=104.50 Aligned_cols=53 Identities=26% Similarity=0.422 Sum_probs=47.6
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHHH
Q 026855 110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV--SRTPTQVASHAQKYFLR 163 (232)
Q Consensus 110 ~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~--~RT~~q~~~~~~ky~~~ 163 (232)
++++.++||+|||++|+++|.+||.++|..||. +++ +||+.||++||..|+..
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCC
Confidence 345567999999999999999999879999999 899 99999999999988654
No 27
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=108.58 Aligned_cols=46 Identities=37% Similarity=0.588 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 026855 113 KGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKY 160 (232)
Q Consensus 113 ~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky 160 (232)
...+||+|||.+|+++|++|| ++|..||+ +|+|||+.||+.||++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~-~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSE-HVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHH-HHSSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHH-HcCCCCHHHHHHHHHHh
Confidence 346899999999999999999 59999999 89999999999999866
No 28
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.7e-15 Score=103.94 Aligned_cols=49 Identities=22% Similarity=0.502 Sum_probs=45.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855 112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161 (232)
Q Consensus 112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~ 161 (232)
.+.++||+|||++|+++|.+||.++|..||. +|++||..||+.||++|+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHc
Confidence 4557999999999999999999769999999 899999999999998874
No 29
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=99.52 E-value=2.4e-14 Score=126.64 Aligned_cols=130 Identities=19% Similarity=0.286 Sum_probs=96.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHH----------HHHhhcCCCCC-------
Q 026855 16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDL----------RKIEAGLVELP------- 78 (232)
Q Consensus 16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~----------~~ie~g~~~~p------- 78 (232)
+.||..|...|++|+.+||.+. |+.||+.|+|||..||+.+|+.+.... ..|+.|...+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~---~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~ 187 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDD---IDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK 187 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTC---HHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHH---HHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999864 999999999999999998887775543 45555544332
Q ss_pred -------CCCCCCCCCCcccccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHhh-----
Q 026855 79 -------GYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGK---GDWRSISRN----- 143 (232)
Q Consensus 79 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~---g~W~~Ia~~----- 143 (232)
.|.++...+.+ .++. .++..||+|||+.||.+|.+||. |.|..|...
T Consensus 188 ~l~~Ki~~~~~P~~~L~i----------------~y~~--~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p 249 (304)
T 1ofc_X 188 ALDQKMSRYRAPFHQLRL----------------QYGN--NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASP 249 (304)
T ss_dssp HHHHHHHTCSSHHHHCCC----------------CCTT--CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCG
T ss_pred HHHHHHHHhcCcHHHhcc----------------ccCC--CCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCc
Confidence 11111111111 0011 24458999999999999999999 999999732
Q ss_pred ------hcCCCCHHHHHHHHHHHHHHHcc
Q 026855 144 ------AVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 144 ------~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
||.+||+.++..|++-++.-+.+
T Consensus 250 ~FrFDwf~kSRTp~el~rRc~tLi~~iek 278 (304)
T 1ofc_X 250 QFRFDWFIKSRTALELQRRCNTLITLIER 278 (304)
T ss_dssp GGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999876544433
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.5e-14 Score=101.92 Aligned_cols=57 Identities=26% Similarity=0.563 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCC--CchHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEET--PGRWERIARQVPGKSSVDVQRRYDDLVLD 66 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~--~~rW~~IA~~vpgRt~~qc~~ry~~ll~~ 66 (232)
.++.....||+|||++|+++|.+||.++ +.+|.+||++|||||..||++||..++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3445678999999999999999999754 36899999999999999999999888764
No 31
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=4.1e-14 Score=96.71 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=47.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
+.......||+|||++|.+++.+||.+ +|..||++|||||..||++||..++.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 344567899999999999999999854 39999999999999999999998875
No 32
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=3.3e-14 Score=100.94 Aligned_cols=49 Identities=24% Similarity=0.572 Sum_probs=43.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855 112 RKGVPWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQKYF 161 (232)
Q Consensus 112 ~~~~~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~ky~ 161 (232)
....+||.|||++|+.+|.+||++ +|..||+ +|||||..||++||+.+.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 345689999999999999999943 8999999 899999999999998764
No 33
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=8.3e-14 Score=95.02 Aligned_cols=53 Identities=23% Similarity=0.473 Sum_probs=47.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
++....+.||+|||++|.+++.+||.+ +|..||.+|||||..||++||..+++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHccCCCHHHHHHHHHHHcC
Confidence 445568899999999999999999853 39999999999999999999999876
No 34
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.7e-14 Score=97.69 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=46.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHccc
Q 026855 112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSV 167 (232)
Q Consensus 112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~~ 167 (232)
.+.++||+|||++|+++++.||. +|..||+ ++|||+.||++||+.|+....+.
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~--~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP--IIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH--HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc--ccCcCHHHHHHHHHHHhChHhcC
Confidence 44568999999999999999999 9999998 45799999999999998876543
No 35
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.20 E-value=4.1e-15 Score=109.63 Aligned_cols=53 Identities=32% Similarity=0.365 Sum_probs=48.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855 112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
...++||+|||.+|++++.+||. +|..||. +|+|||..||++||+.|+++++.
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 45579999999999999999999 9999999 89999999999999999877654
No 36
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.46 E-value=8.9e-14 Score=92.14 Aligned_cols=48 Identities=27% Similarity=0.607 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
.+.||+|||++|.+++.+||.+ +|..||.+|||||..||++||..+++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999864 39999999999999999999999876
No 37
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.44 E-value=1.2e-13 Score=91.56 Aligned_cols=48 Identities=23% Similarity=0.576 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
.+.||+|||++|.+++.+||.+ +|..||.+|+|||..||++||..+|+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999864 49999999999999999999998875
No 38
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.43 E-value=3.8e-13 Score=97.73 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHhh---hcCCCCHHHHHHHHHHHHHHHc
Q 026855 116 PWTAEEHRLFLIGLEKYGKGDWRSISRN---AVVSRTPTQVASHAQKYFLRMN 165 (232)
Q Consensus 116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~---~v~~RT~~q~~~~~~ky~~~~~ 165 (232)
+||+|||++|+++|++||.|+|..|++. ++++||..||+++|.+++++..
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999984 2899999999999999876544
No 39
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.42 E-value=3.5e-13 Score=93.32 Aligned_cols=50 Identities=20% Similarity=0.532 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVP--GKSSVDVQRRYDDLVL 65 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp--gRt~~qc~~ry~~ll~ 65 (232)
.....||+|||++|+++|.+||.+. |..||+++| |||..||++||..++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGN---WAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCc---hHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 4578999999999999999998653 999999977 9999999999999876
No 40
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.42 E-value=4.6e-13 Score=90.89 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC-CCCHHHHHHHHHHHH
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVP-GKSSVDVQRRYDDLV 64 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp-gRt~~qc~~ry~~ll 64 (232)
...||+|||.+|.++|.+||.+ +|..||.+|| |||..||++||..+.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~---~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLG---NWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTT---CHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999854 3999999999 999999999998763
No 41
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=96.59 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=41.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHH
Q 026855 111 RRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQK 159 (232)
Q Consensus 111 ~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~k 159 (232)
..+.++||+|||++|++++.+||. +|..||+ ++ |||+.||++||..
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCRL 65 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHHH
Confidence 345679999999999999999999 8999999 78 9999999999863
No 42
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.7e-13 Score=93.53 Aligned_cols=58 Identities=22% Similarity=0.511 Sum_probs=50.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 026855 11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAG 73 (232)
Q Consensus 11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g 73 (232)
+....+.||+|||++|.+++..||. +|.+||. ++|||..||++||..+++....+++|
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 4445789999999999999999986 4999999 88999999999999999987666554
No 43
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.3e-13 Score=91.48 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=42.2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHH
Q 026855 110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQ 158 (232)
Q Consensus 110 ~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ 158 (232)
+++...+||+||+++|++++.+||+ +|..||. +|++||..||..||-
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~-~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLYYY 54 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH-HCTTSCHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHH
Confidence 3445579999999999999999998 9999998 999999999999763
No 44
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.40 E-value=6.2e-13 Score=88.49 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVP--GKSSVDVQRRYDDLVL 65 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp--gRt~~qc~~ry~~ll~ 65 (232)
.++||+|||++|.++|.+||.+ +|..||.+|| |||..||++||..++.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5789999999999999999854 3999999999 9999999999998864
No 45
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.39 E-value=8.4e-13 Score=93.34 Aligned_cols=53 Identities=28% Similarity=0.541 Sum_probs=48.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLD 66 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~ 66 (232)
++....++||+|||++|.+++.+||. +|..||.+|||||..||+.||..++..
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44556889999999999999999987 399999999999999999999998774
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.38 E-value=1.2e-13 Score=99.52 Aligned_cols=49 Identities=20% Similarity=0.474 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH-HH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL-VL 65 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l-l~ 65 (232)
.....||+|||.+|.+||.+||. +|.+||++|++||..||+.||..+ +.
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~~RT~~qcr~r~~~~~i~ 65 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHVGSRTQDECILHFLRLPIE 65 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHSSCCHHHHHHHHTTSCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 34679999999999999999992 499999999999999999999887 44
No 47
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.37 E-value=6e-13 Score=100.36 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~ 161 (232)
.++||+|||++|+.+|.+||.++|..||. +|++||+.||+.||.+|+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHhcc
Confidence 46899999999999999999878999999 899999999999998874
No 48
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.37 E-value=9.6e-13 Score=97.54 Aligned_cols=51 Identities=33% Similarity=0.626 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855 115 VPWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
++||.|||++|+.+|.+||.+ +|..||+ +|||||..||++||+.++.....
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~~dv~~ 62 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDIKY 62 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999999843 7999999 89999999999999998776543
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.36 E-value=1.6e-12 Score=98.31 Aligned_cols=55 Identities=24% Similarity=0.392 Sum_probs=47.6
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHH
Q 026855 110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNA---VVSRTPTQVASHAQKYFLRM 164 (232)
Q Consensus 110 ~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~---v~~RT~~q~~~~~~ky~~~~ 164 (232)
.+++..+||+|||++|+++|++||.|+|..|++.+ +++||..+|+++|..+++.-
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34556799999999999999999999999999843 38999999999999886543
No 50
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.36 E-value=7.6e-13 Score=102.36 Aligned_cols=86 Identities=14% Similarity=0.275 Sum_probs=70.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQV----PGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSP 87 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~v----pgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~ 87 (232)
.....+||.|||++|+++|.+||.+ +|..||..+ +|||..||++||..++.... +
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~--------~---------- 72 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS--------I---------- 72 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH--------T----------
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc--------c----------
Confidence 3457899999999999999999875 499999994 89999999999999987321 0
Q ss_pred CcccccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 026855 88 GRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRS 139 (232)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~ 139 (232)
.+..+++.+|++||+..++.+...+|. +|.+
T Consensus 73 --------------------~p~~krg~~~p~e~~~rv~~~h~~~gn-~~~~ 103 (121)
T 2juh_A 73 --------------------APQQRRGEPVPQDLLDRVLAAHAYWSQ-QQGK 103 (121)
T ss_dssp --------------------CSTTCCCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred --------------------CCcccCCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence 011123448999999999999999998 7865
No 51
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.35 E-value=2.1e-12 Score=90.46 Aligned_cols=52 Identities=23% Similarity=0.454 Sum_probs=47.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 026855 11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVP--GKSSVDVQRRYDDLVL 65 (232)
Q Consensus 11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp--gRt~~qc~~ry~~ll~ 65 (232)
+....+.||+|||++|.++|.+||.+ +|..||.+|+ |||..||++||..++.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSS---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC---cHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 44567899999999999999999854 3999999999 9999999999999988
No 52
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.34 E-value=3.2e-12 Score=99.01 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=66.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQV----PGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSP 87 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~v----pgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~ 87 (232)
.....+||.|||+.|+++|.+||.+ +|..|+..+ +|||..||++||..++.... +
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~-----------~------- 86 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS-----------I------- 86 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH-----------S-------
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc-----------C-------
Confidence 3567899999999999999999976 399999974 89999999999999986311 0
Q ss_pred CcccccCCccCCCCCCCCcccccccCCCCCCHHH-HHHHHHHHHHhCC
Q 026855 88 GRVAESGASLGNNSNRSRDRETERRKGVPWTAEE-HRLFLIGLEKYGK 134 (232)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE-d~~l~~~l~~~G~ 134 (232)
.+..+.+.|+++| +..++++...||.
T Consensus 87 ---------------------~p~~kr~~~~p~e~~~~v~~~h~~~g~ 113 (122)
T 2roh_A 87 ---------------------APQQRRGAPVPQELLDRVLAAQAYWSV 113 (122)
T ss_dssp ---------------------CTTTCCCSSCCHHHHHHHHHHHHHHHS
T ss_pred ---------------------CccccCCCCCCHHHHHHHHHHHHHHhh
Confidence 0112346899999 7889999999997
No 53
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.34 E-value=1.3e-12 Score=99.08 Aligned_cols=46 Identities=30% Similarity=0.529 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855 115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~ 161 (232)
++||+|||.+|+.+|.+||.++|..||. +|++||+.||+.||.+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHH
Confidence 4799999999999999999889999999 899999999999998874
No 54
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.33 E-value=2.6e-12 Score=99.41 Aligned_cols=56 Identities=21% Similarity=0.385 Sum_probs=48.8
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHHc
Q 026855 110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNA---VVSRTPTQVASHAQKYFLRMN 165 (232)
Q Consensus 110 ~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~---v~~RT~~q~~~~~~ky~~~~~ 165 (232)
.+++..+||+|||++|+++|++||.|+|..|++.+ +++||..||+++|..++....
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 34556799999999999999999999999999943 499999999999999877543
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.33 E-value=6.4e-12 Score=97.29 Aligned_cols=56 Identities=27% Similarity=0.438 Sum_probs=48.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHHc
Q 026855 110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNA---VVSRTPTQVASHAQKYFLRMN 165 (232)
Q Consensus 110 ~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~---v~~RT~~q~~~~~~ky~~~~~ 165 (232)
.+++..+||+|||+.|+++|++||.|+|..|++.+ +++||..||+++|.++++.-.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34456799999999999999999999999999942 499999999999999876543
No 56
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.31 E-value=2.8e-12 Score=99.96 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=44.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855 112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL 162 (232)
Q Consensus 112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~ 162 (232)
.+.++||+|||++|+.++.+||. +|..||. +|++||+.||+.||.+|+.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH-TCTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHhhhcc
Confidence 34568999999999999999999 9999999 8999999999999998863
No 57
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.30 E-value=1.9e-12 Score=101.48 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855 115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL 162 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~ 162 (232)
++||+|||++|+.+|.+||.++|..||. +|+|||+.||+.||++|+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHhhccC
Confidence 5899999999999999999879999999 8999999999999998863
No 58
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.29 E-value=1.6e-12 Score=109.76 Aligned_cols=52 Identities=31% Similarity=0.514 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855 113 KGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 113 ~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
...+||+||+++|++||.+||+ +|..||+ +|+|||..||++||.+|++|++.
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~kKRlnL 183 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFNI 183 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTTH
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHhhH
Confidence 3458999999999999999999 9999999 89999999999999999777543
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.5e-11 Score=83.10 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
....+||++|+++|++++.+||.+ |.+||.+||+||+.||+++|...
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~----w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTC----HHHHHHHCTTSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHHHh
Confidence 346799999999999999999864 99999999999999999999754
No 60
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.23 E-value=8.8e-12 Score=88.12 Aligned_cols=45 Identities=22% Similarity=0.407 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CCHHHHHhhhcCCCCHHHHHHHHHHH
Q 026855 115 VPWTAEEHRLFLIGLEKYGK---GDWRSISRNAVVSRTPTQVASHAQKY 160 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~G~---g~W~~Ia~~~v~~RT~~q~~~~~~ky 160 (232)
..||.||+++|+.||..|++ ++|..||. +|+|||..||+.||+.+
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 47999999999999999997 48999999 89999999999988755
No 61
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.21 E-value=1.5e-11 Score=87.11 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=45.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 9 SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 9 ~~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
-.+....++||+|||++|.+++++||.. |..||.+| |||..||++||..+..
T Consensus 17 ldP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 17 QGDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp --CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3455668899999999999999999864 99999999 9999999999987643
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.19 E-value=2.6e-11 Score=82.73 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhh--hcCCCCHHHHHHHHHHH
Q 026855 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRN--AVVSRTPTQVASHAQKY 160 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~--~v~~RT~~q~~~~~~ky 160 (232)
+.+||+||++.|+++|++||+ +|..|+.. |+++||...++++|..+
T Consensus 8 r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 8 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHH
Confidence 458999999999999999999 99999942 89999999999987754
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.18 E-value=3.7e-11 Score=84.91 Aligned_cols=45 Identities=24% Similarity=0.526 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHHH
Q 026855 114 GVPWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQKY 160 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~ky 160 (232)
...||.||+++|+.+|.+||.| +|.+||. ++ |||..||++||+.+
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHH
Confidence 3579999999999999999854 7999999 77 89999999999876
No 64
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.11 E-value=2.9e-10 Score=82.44 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHh----CCCCCHHHHHHHHHHHHHH
Q 026855 16 SSWTREEDKLFERALVTFPEETPGRWERIARQ----VPGKSSVDVQRRYDDLVLD 66 (232)
Q Consensus 16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~----vpgRt~~qc~~ry~~ll~~ 66 (232)
.+||+|||++|++++.+||.| +|..|+.. |+|||..||++||..++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999976 39999996 8999999999999999863
No 65
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.70 E-value=7.8e-12 Score=91.95 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 026855 9 SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLD 66 (232)
Q Consensus 9 ~~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~ 66 (232)
...+...+.||+|||.+|.+++..||.. |..||.+|||||..||+.||..++..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~----W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGRN----WSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 3444567899999999999999999863 99999999999999999999988763
No 66
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=99.10 E-value=3.6e-10 Score=102.12 Aligned_cols=132 Identities=20% Similarity=0.303 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC-CCCHHHHHHHHHHHHH----------HHHHHhhcCCC--------
Q 026855 16 SSWTREEDKLFERALVTFPEETPGRWERIARQVP-GKSSVDVQRRYDDLVL----------DLRKIEAGLVE-------- 76 (232)
Q Consensus 16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp-gRt~~qc~~ry~~ll~----------~~~~ie~g~~~-------- 76 (232)
+.||..|-..|++|+.+||.+. .+.||..|. |||..+|..+++.+.. -+..|+.|...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d---~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~ 200 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNS---IQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQ 200 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTC---HHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhH---HHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999865 999999998 9999999977765532 11223222111
Q ss_pred ------CCCCCCCCCCCCcccccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHhh----
Q 026855 77 ------LPGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGK---GDWRSISRN---- 143 (232)
Q Consensus 77 ------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~---g~W~~Ia~~---- 143 (232)
+..|.++...+.+ .++....++..||+|||+.||.+|.+||- |.|..|-..
T Consensus 201 ~~L~~Ki~~y~~P~~~L~i----------------~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~ 264 (374)
T 2y9y_A 201 EALRRKLSEYKNPFFDLKL----------------KHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDC 264 (374)
T ss_dssp HHHHHHHTTCSSHHHHCCC----------------SSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHccCCHHHcee----------------ccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhC
Confidence 1122211111111 01111113457999999999999999999 899999654
Q ss_pred -------hcCCCCHHHHHHHHHHHHHHHcc
Q 026855 144 -------AVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 144 -------~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
|+.+||+.++..|+.-++.-+.+
T Consensus 265 p~FrFDwF~kSRT~~EL~rRc~tLi~~IeK 294 (374)
T 2y9y_A 265 PLFELDFYFRSRTPVELARRGNTLLQCLEK 294 (374)
T ss_dssp SGGGSCHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred cchhhhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 69999999999999866655444
No 67
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4.1e-10 Score=77.54 Aligned_cols=44 Identities=23% Similarity=0.483 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHH
Q 026855 113 KGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHA 157 (232)
Q Consensus 113 ~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~ 157 (232)
....||+||.++|+++|.+||+ +|..|++++|++||..||..+|
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHH
Confidence 3458999999999999999999 9999998579999999999965
No 68
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.01 E-value=3.6e-11 Score=84.44 Aligned_cols=43 Identities=33% Similarity=0.603 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHH
Q 026855 115 VPWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQ 158 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~ 158 (232)
..||.||+++|+.||.+|+++ +|.+||+ +|||||..+|+.||+
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence 479999999999999999987 8999999 899999999999886
No 69
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.01 E-value=1.6e-10 Score=98.45 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC-----HHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855 113 KGVPWTAEEHRLFLIGLEKYGKGD-----WRSISRNAVVSRTPTQVASHAQKYFLRM 164 (232)
Q Consensus 113 ~~~~WT~eEd~~l~~~l~~~G~g~-----W~~Ia~~~v~~RT~~q~~~~~~ky~~~~ 164 (232)
+..+||+|||++|++++++||..+ |..||+ +++|||+.||++||..|+.+.
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHHHHHhhh
Confidence 345899999999999999999843 999999 899999999999999997654
No 70
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.00 E-value=8.4e-10 Score=77.50 Aligned_cols=44 Identities=32% Similarity=0.451 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHH
Q 026855 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQ 158 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ 158 (232)
...||+||.++|++||.+||+ +|..|++++|++||..||..+|-
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence 358999999999999999999 99999985699999999999763
No 71
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=98.96 E-value=2.3e-08 Score=83.79 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=84.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH-HhhcCC---CCCCCCCCCCC-
Q 026855 14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQ--VPGKSSVDVQRRYDDLVLDLRK-IEAGLV---ELPGYEDEMDS- 86 (232)
Q Consensus 14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~--vpgRt~~qc~~ry~~ll~~~~~-ie~g~~---~~p~~~~~~~~- 86 (232)
....||+.|...|.+++.+||. ..+||+.|+.. |.+||..++..++..+...-.. +..... ....-.....+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~-~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGG-PLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSS-GGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred cCCCCCHHHHHHHHHHHHHHCC-chhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 4567999999999999999984 24579999975 7799999999988877553221 111000 00000000000
Q ss_pred ------CCcccc----------------cCC--ccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 026855 87 ------PGRVAE----------------SGA--SLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISR 142 (232)
Q Consensus 87 ------~~~~~~----------------~~~--~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~ 142 (232)
..+.+. ... ......-.... ........||++||..||.|+.+||.|+|..|..
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~--~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHT--KAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCC--CCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCC--CCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 000000 000 00000000000 0111234699999999999999999999999976
Q ss_pred h-------------hcCCCCHHHHHHHHHHHHHHH
Q 026855 143 N-------------AVVSRTPTQVASHAQKYFLRM 164 (232)
Q Consensus 143 ~-------------~v~~RT~~q~~~~~~ky~~~~ 164 (232)
. +...++...+..|+...+.-+
T Consensus 163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred ChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 3 234455678889887444444
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.3e-09 Score=73.72 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=44.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHH-hCCCCCHHHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIAR-QVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~-~vpgRt~~qc~~ry~~l 63 (232)
.++.....||+||.++|+++|.+||.+ |..||. +||+||+.||.++|..-
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHhcc
Confidence 344557899999999999999999987 999998 59999999999999754
No 73
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.88 E-value=4.4e-09 Score=71.68 Aligned_cols=52 Identities=23% Similarity=0.426 Sum_probs=45.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHH---HhCCCCCHHHHHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIA---RQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA---~~vpgRt~~qc~~ry~~ll~ 65 (232)
+..+...+||+||++.|.++|.+||.. |..|+ .++++||..++.++|..|..
T Consensus 3 ~~~~~r~~WT~EE~~~L~~gV~k~G~~----W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 3 SGSSGRKDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCCCSSSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHh----HHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 344568899999999999999999874 99999 47789999999999999865
No 74
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.87 E-value=5.6e-09 Score=73.29 Aligned_cols=50 Identities=26% Similarity=0.397 Sum_probs=44.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHH-hCCCCCHHHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIAR-QVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~-~vpgRt~~qc~~ry~~l 63 (232)
+.+.....||++|.++|+++|.+||.+ |..||. +||+||+.||.++|..-
T Consensus 3 ~~r~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 3 SGSSGMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CcccCCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHHhh
Confidence 344567899999999999999999987 999999 69999999999999754
No 75
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.86 E-value=1.1e-08 Score=77.22 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=46.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhC----CCCCHHHHHHHHHHHHH
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQV----PGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~v----pgRt~~qc~~ry~~ll~ 65 (232)
.....+||.|||++|+++|.+||.+ +|..|+..+ +|||..||+++|..++.
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 4568899999999999999999976 399999976 89999999999999986
No 76
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=98.76 E-value=3e-08 Score=68.13 Aligned_cols=54 Identities=31% Similarity=0.399 Sum_probs=45.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCC--CHHHHHhhh--cCCCCHHHHHHHHHHHHHHHcc
Q 026855 112 RKGVPWTAEEHRLFLIGLEKYGKG--DWRSISRNA--VVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 112 ~~~~~WT~eEd~~l~~~l~~~G~g--~W~~Ia~~~--v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
+.+..||+|.|+.|++||.++|.. -++.|-+ + |+|.|..+|+||.|||+..+++
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILD-LMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 344689999999999999999952 2889987 5 5688999999999999988764
No 77
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.75 E-value=1.2e-08 Score=75.50 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHH
Q 026855 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHA 157 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~ 157 (232)
...||+||+++|.+++..||+ +|..||. ++++||..||..+|
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~-~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLYY 84 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHH-TCTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHH-HcCCCCHHHHHHHH
Confidence 357999999999999999999 9999998 99999999999976
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.70 E-value=2.5e-08 Score=73.83 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
...||+||.++|.+++..||++ |.+||++||+||..||.++|..-
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHhcc
Confidence 5789999999999999999986 99999999999999999999654
No 79
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.69 E-value=1.7e-08 Score=85.19 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
.....||+||+++|++|+.+||.+ |..||..|++||..||+.+|.....
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 346799999999999999999976 9999999999999999999986644
No 80
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.24 E-value=1.2e-06 Score=59.23 Aligned_cols=47 Identities=11% Similarity=0.304 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHh--------CCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855 115 VPWTAEEHRLFLIGLEKY--------GKGDWRSISRNAVVSRTPTQVASHAQKYF 161 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~--------G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~ 161 (232)
.+||+|||..|++.|.+| |..-|+.+++..++.+|-.+|++||.|++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 489999999999999999 55479999984599999999999888764
No 81
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.20 E-value=9.7e-06 Score=58.89 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=50.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 026855 9 SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLR 68 (232)
Q Consensus 9 ~~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~ 68 (232)
...|-.--.||+|||..+..++++-|. +++.|..||+.|.+|+..||.+|+.+|+..+.
T Consensus 27 ~s~Ge~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 27 SSTGEKVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 455556678999999999999999765 36779999999988999999999999977543
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.17 E-value=4.1e-06 Score=61.59 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHccc
Q 026855 115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAV-----VSRTPTQVASHAQKYFLRMNSV 167 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v-----~~RT~~q~~~~~~ky~~~~~~~ 167 (232)
.+||.||+..|++++++||. +|..|+.. . ++||..++++||-...+++...
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DR-y~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDR-YDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHH-SCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-Ceeeehhh-hccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999 99999994 5 6899999999887776666544
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.09 E-value=3.4e-06 Score=78.63 Aligned_cols=46 Identities=24% Similarity=0.436 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
....||.+|..+|.++|.+||.+ |..||..|++||..||+.+|...
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCCCCHHHHHHHHHHH
Confidence 46799999999999999999986 99999999999999999999765
No 84
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.08 E-value=1.2e-05 Score=59.04 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHH
Q 026855 16 SSWTREEDKLFERALVTFPEETPGRWERIARQV-----PGKSSVDVQRRYDDLVLDLRK 69 (232)
Q Consensus 16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~v-----pgRt~~qc~~ry~~ll~~~~~ 69 (232)
..||.||+..|.+++.+|+- ||-.|+..+ ++||++++++||..+...+..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999976 499999999 589999999999988776543
No 85
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.04 E-value=1e-05 Score=54.65 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC-----CCchHHHHHH-hCCCCCHHHHHHHHHHHHH
Q 026855 15 SSSWTREEDKLFERALVTFPEE-----TPGRWERIAR-QVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~-----~~~rW~~IA~-~vpgRt~~qc~~ry~~ll~ 65 (232)
..+||+|||.+|.+.|+.|... ...-|..+|+ .+|++|-.+|++||...+.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4689999999999999999321 3456999999 8999999999999988653
No 86
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=97.96 E-value=6.1e-05 Score=65.55 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHh--CCCCCHHHHHHHHHHHHH
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQ--VPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~--vpgRt~~qc~~ry~~ll~ 65 (232)
.+.||+.|...|.+++.+||. ...||+.|+.. |+.|+...+..-|..+.+
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~-~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGN-LKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSS-CTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 467999999999999999984 24589999764 568999999888877644
No 87
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.89 E-value=2.7e-05 Score=56.60 Aligned_cols=51 Identities=24% Similarity=0.424 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--CHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855 115 VPWTAEEHRLFLIGLEKYGKG--DWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~G~g--~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
.-||.|||+.+|..+++-|.. .|..||+ .+++||+.||++|++.+++...+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~-~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHH-HHccCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999999863 7999999 79999999999999987766554
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.93 E-value=4.2e-06 Score=57.64 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=45.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 026855 11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLD 66 (232)
Q Consensus 11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~ 66 (232)
.|-.--.||+|||..+..++++-|. ++..|..||..| +||+.||.+||.+|+..
T Consensus 10 ~ge~vvlWTReeDR~IL~~cq~~G~-s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 10 KGEIIILWTRNDDRVILLECQKRGP-SSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 3334557999999999999998665 357799999999 89999999999998764
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.92 E-value=4.3e-06 Score=57.57 Aligned_cols=49 Identities=20% Similarity=0.475 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--CHHHHHhhhcCCCCHHHHHHHHHHHHHHHc
Q 026855 115 VPWTAEEHRLFLIGLEKYGKG--DWRSISRNAVVSRTPTQVASHAQKYFLRMN 165 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~G~g--~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~ 165 (232)
.-||.|||+.+|..+++-|.. .|..||. .+ +||+.||.+|++.+.....
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 369999999999999999863 7999998 57 9999999999988765544
No 90
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.26 E-value=0.00051 Score=60.63 Aligned_cols=49 Identities=29% Similarity=0.565 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855 115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRM 164 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~ 164 (232)
+.||..+...|+.|+.+||+.+|..||. .|+|+|..+|+.+++-++.+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhH
Confidence 3699999999999999999999999999 799999999999987777665
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.24 E-value=0.0013 Score=48.18 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHH
Q 026855 16 SSWTREEDKLFERALVTFPEETPGRWERIARQVP-----GKSSVDVQRRYDDLVLDLRK 69 (232)
Q Consensus 16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp-----gRt~~qc~~ry~~ll~~~~~ 69 (232)
..||.||-..|-.++..|.- ||-.|+.... .||++|.++||..+...+..
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999975 4999999985 69999999999988776643
No 92
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.08 E-value=0.00068 Score=48.64 Aligned_cols=54 Identities=15% Similarity=0.400 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHH----CC--CCCCchHHHHHHhCC----CCCHHHHHHHHHHHHHHHH
Q 026855 15 SSSWTREEDKLFERALVT----FP--EETPGRWERIARQVP----GKSSVDVQRRYDDLVLDLR 68 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~----~p--~~~~~rW~~IA~~vp----gRt~~qc~~ry~~ll~~~~ 68 (232)
...||.+|..+|+.+... |. ......|+.||..|. .||+.||..+|+.|.....
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 567999999999999754 21 112346999999976 6999999999999987543
No 93
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.05 E-value=0.00085 Score=48.10 Aligned_cols=53 Identities=15% Similarity=0.347 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHh----CCC-----CHHHHHhhhcC----CCCHHHHHHHHHHHHHHHccc
Q 026855 114 GVPWTAEEHRLFLIGLEKY----GKG-----DWRSISRNAVV----SRTPTQVASHAQKYFLRMNSV 167 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~----G~g-----~W~~Ia~~~v~----~RT~~q~~~~~~ky~~~~~~~ 167 (232)
...||.+|-.+||.+...+ ..+ .|..||.. +. .||+.||+.+|..+....+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~-m~~~G~~rs~~qC~~K~~nL~k~Yk~~ 69 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSK-MREKGFDRSPDMCTDKWRNLLKEFKKA 69 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3579999999999998753 111 69999984 33 799999999999877666554
No 94
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.03 E-value=0.0019 Score=47.25 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHhhhc----CCCCHHHHHHHHHHHHHHHccc
Q 026855 116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAV----VSRTPTQVASHAQKYFLRMNSV 167 (232)
Q Consensus 116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v----~~RT~~q~~~~~~ky~~~~~~~ 167 (232)
.||.||-..|++++++|+. +|-.|+..|- +.||..+++.||-...+++...
T Consensus 32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999 9999998653 4799999999887777776544
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.14 E-value=0.0076 Score=49.81 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC--CCCHHHHHhh-hcCCCCHHHHHHHHHHHHHHH
Q 026855 114 GVPWTAEEHRLFLIGLEKYG--KGDWRSISRN-AVVSRTPTQVASHAQKYFLRM 164 (232)
Q Consensus 114 ~~~WT~eEd~~l~~~l~~~G--~g~W~~Ia~~-~v~~RT~~q~~~~~~ky~~~~ 164 (232)
...||+.|-+.|+.++.+|| .++|..|+++ -+.+||..+++..+..+..+.
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999 6799999873 267999999998777665543
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.83 E-value=0.1 Score=35.39 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 026855 14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVP--GKSSVDVQRRYDDLVL 65 (232)
Q Consensus 14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp--gRt~~qc~~ry~~ll~ 65 (232)
..-.||+|.-+.|..||..+|.+ .-.+..|.+.|. |.|..+|..|.+.+-.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~-~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTT-TCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCC-CCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999843 334888988865 8899999988776543
No 97
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.64 E-value=0.11 Score=46.84 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC-CCCHHHHHHHHHHHHHHHc
Q 026855 115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV-SRTPTQVASHAQKYFLRMN 165 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~-~RT~~q~~~~~~ky~~~~~ 165 (232)
+.||.-+=..|+.|+.+||+.+-..||. .|. ++|..+|+..++-|+.|..
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~Ry~ 174 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSNIE 174 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHTCS
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHhhh
Confidence 3699999999999999999999999999 687 9999999987776665543
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=86.77 E-value=0.51 Score=40.73 Aligned_cols=30 Identities=30% Similarity=0.624 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHh
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQ 47 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~ 47 (232)
.+.|+.+||..|...|.+||-|. |+.|..-
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG~---We~Ir~D 197 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYGS---WTQIRDD 197 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTC---HHHHHHC
T ss_pred CCCcChHHHHHHHHHHHHHcCCc---HHHHhcC
Confidence 57899999999999999999986 9999863
No 99
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=81.80 E-value=3 Score=29.48 Aligned_cols=48 Identities=27% Similarity=0.300 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-CHH--------------HHHh----hhcCCCCHHHHHHHHHHHHH
Q 026855 115 VPWTAEEHRLFLIGLEKYGKG-DWR--------------SISR----NAVVSRTPTQVASHAQKYFL 162 (232)
Q Consensus 115 ~~WT~eEd~~l~~~l~~~G~g-~W~--------------~Ia~----~~v~~RT~~q~~~~~~ky~~ 162 (232)
+-|.++=+..|++||..|.+- .++ .||. ..-..||..||.+|-|-.-+
T Consensus 7 ~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~ 73 (82)
T 2hzd_A 7 GVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAR 73 (82)
T ss_dssp CCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHH
Confidence 469999999999999999642 221 2232 13468999999998886533
No 100
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=80.77 E-value=7.4 Score=26.91 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=42.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
++|++....|.+....|++.+...+--+...=+.||..+ |=|..||.-=+.+
T Consensus 2 ~~g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t-gLte~qIkvWFqN 53 (76)
T 2ecc_A 2 SSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT-GLPRPEIIQWFGD 53 (76)
T ss_dssp CCSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-CcCHHHhhHHhHh
Confidence 578889999999999999999986654555678899999 8999988764443
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=67.46 E-value=6 Score=29.36 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=27.5
Q ss_pred HHHHHHHhC-------CCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855 125 FLIGLEKYG-------KGDWRSISRNAVVSRTPTQVASHAQKYFLRM 164 (232)
Q Consensus 125 l~~~l~~~G-------~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~ 164 (232)
|-.+|.+.| ...|..||+ .++--....++.+|.+|+...
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQ-RLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHH-HHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHH-HhCCChHHHHHHHHHHHHHHH
Confidence 444555555 128999999 465555889999999996543
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=59.93 E-value=17 Score=26.29 Aligned_cols=30 Identities=7% Similarity=0.307 Sum_probs=22.0
Q ss_pred CHHHHHhhhcCCCC----HHHHHHHHHHHHHHHcc
Q 026855 136 DWRSISRNAVVSRT----PTQVASHAQKYFLRMNS 166 (232)
Q Consensus 136 ~W~~Ia~~~v~~RT----~~q~~~~~~ky~~~~~~ 166 (232)
.|..|++. ++--. ..+++.+|.+|+.....
T Consensus 67 ~W~~va~~-lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 67 KWAKVANR-MQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp THHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-hCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 89999995 54322 46899999999766543
No 103
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.92 E-value=33 Score=22.39 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=39.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
........+|.+....|+..+...+.-+...=..||..+ |-+..+|.-=+.+
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 57 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKV-HLREEKVEVWFKN 57 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CCCHHHeehcccc
Confidence 334557789999999999999986654445568899999 7899888765543
No 104
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=59.66 E-value=4.6 Score=31.54 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=17.6
Q ss_pred HHHHHHhCCCCCHHHHHHHH
Q 026855 41 WERIARQVPGKSSVDVQRRY 60 (232)
Q Consensus 41 W~~IA~~vpgRt~~qc~~ry 60 (232)
-..||..+.|||++||++.+
T Consensus 118 c~~vA~~ikgkt~eeir~~f 137 (160)
T 2p1m_A 118 CQTVADMIKGKTPEEIRTTF 137 (160)
T ss_dssp HHHHHHTTTTCCHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHc
Confidence 47899999999999999876
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=57.02 E-value=12 Score=27.62 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=27.7
Q ss_pred HHHHHHHHhC-------CCCHHHHHhhhcCCCC----HHHHHHHHHHHHHHHcc
Q 026855 124 LFLIGLEKYG-------KGDWRSISRNAVVSRT----PTQVASHAQKYFLRMNS 166 (232)
Q Consensus 124 ~l~~~l~~~G-------~g~W~~Ia~~~v~~RT----~~q~~~~~~ky~~~~~~ 166 (232)
.|-.+|.+.| ...|..|++. ++--. ..+++.+|.+|+.....
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~-lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQR-LNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHH-TTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHH-hCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4555566665 1289999994 44322 56899999999655443
No 106
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=55.64 E-value=16 Score=27.29 Aligned_cols=42 Identities=14% Similarity=0.413 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CCHHHHHhhhcCCCC----HHHHHHHHHHHHHHHcc
Q 026855 124 LFLIGLEKYGK-------GDWRSISRNAVVSRT----PTQVASHAQKYFLRMNS 166 (232)
Q Consensus 124 ~l~~~l~~~G~-------g~W~~Ia~~~v~~RT----~~q~~~~~~ky~~~~~~ 166 (232)
.|-.+|.+.|= ..|..|++. ++--+ ..+++.+|.+|+.....
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~-lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATN-LNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHH-TTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHH-hCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 34455556551 289999994 54433 35899999999766554
No 107
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=55.21 E-value=11 Score=28.25 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=24.3
Q ss_pred CHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855 136 DWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 136 ~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
.|..|++. +.--....++.+|.+|+.....
T Consensus 71 ~W~~Va~~-lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 71 QWSMVAQR-LQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHH-HTCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HCCChHHHHHHHHHHHHHHHHH
Confidence 79999994 6555589999999999877654
No 108
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=52.79 E-value=45 Score=21.75 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
.....+|.+....|+..+...+.-+...=..||..+ |-+..+|.-=+.+-
T Consensus 9 r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 58 (70)
T 2e1o_A 9 GGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML-QLSERQVKTWFQNR 58 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CCCHHHhhHhhHhh
Confidence 456789999999999999886654445568899999 78998887655443
No 109
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=50.94 E-value=22 Score=26.61 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=28.2
Q ss_pred HHHHHHHHhCC-------CCHHHHHhhhcCC-C----CHHHHHHHHHHHHHHHccc
Q 026855 124 LFLIGLEKYGK-------GDWRSISRNAVVS-R----TPTQVASHAQKYFLRMNSV 167 (232)
Q Consensus 124 ~l~~~l~~~G~-------g~W~~Ia~~~v~~-R----T~~q~~~~~~ky~~~~~~~ 167 (232)
.|-.+|.+.|= ..|..|++. ++- . ...+++.+|.+|+......
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~-lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~ 110 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKG-LHLPSSITSAAFTLRTQYMKYLYPYECE 110 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHH-TCCCSSCCSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHH-hCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34455666651 289999995 432 1 2578999999997665543
No 110
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=49.59 E-value=51 Score=21.46 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
.....+|.+....|+..+..-+.-+...=..||..+ |-|..+|.-=+.+-
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNR 58 (70)
T 2cra_A 9 KKRIPYSKGQLRELEREYAANKFITKDKRRKISAAT-SLSERQITIWFQNR 58 (70)
T ss_dssp CSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CCCHHHhhHhhHhH
Confidence 456789999999999999886554445568899999 79998887655443
No 111
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=49.57 E-value=7.2 Score=30.84 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=17.4
Q ss_pred HHHHHHhCCCCCHHHHHHHH
Q 026855 41 WERIARQVPGKSSVDVQRRY 60 (232)
Q Consensus 41 W~~IA~~vpgRt~~qc~~ry 60 (232)
...||..+.|||++|+|+.+
T Consensus 126 c~~vA~~ikgktpeeiR~~f 145 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTF 145 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHc
Confidence 47899999999999998876
No 112
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=49.15 E-value=50 Score=23.04 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCC---------------CCHHHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPG---------------KSSVDVQRRYDDLVL 65 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpg---------------Rt~~qc~~ry~~ll~ 65 (232)
.....||.+++..|++.+..-+.-+...-+.||..+ + -|..+|..=+.+--.
T Consensus 9 r~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l-~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~ 75 (95)
T 2cuf_A 9 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANAC-NAVIQKPGKKLSDLERVTSLKVYNWFANRRK 75 (95)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CchhhcccccccccCcCCHHHHHHHHHHHHH
Confidence 456689999999999999985544444568889988 5 777887665554433
No 113
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.95 E-value=52 Score=24.37 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=28.3
Q ss_pred HHHHHHHHhC-------CCCHHHHHhhhcCCCC----HHHHHHHHHHHHHHHccc
Q 026855 124 LFLIGLEKYG-------KGDWRSISRNAVVSRT----PTQVASHAQKYFLRMNSV 167 (232)
Q Consensus 124 ~l~~~l~~~G-------~g~W~~Ia~~~v~~RT----~~q~~~~~~ky~~~~~~~ 167 (232)
.|-.+|.+.| ...|..|++. ++--+ ..+++.+|.+|+......
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~-lg~~~~~~~~~~Lr~~Y~k~L~~yE~~ 99 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATK-MGFAPGKAVGSHIRGHYERILNPYNLF 99 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHH-TTCCSSSHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHH-hCCCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 3445555655 1289999994 54322 358999999997776654
No 114
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.86 E-value=58 Score=21.82 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=39.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
......+|.+.+..|+..+..-+.-+...=..||..+ |-+..+|.-=+.+-
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNR 58 (80)
T 2dms_A 8 RRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI-NLPESRVQVWFKNR 58 (80)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHhhhhhHHH
Confidence 3456789999999999999886554445568899999 78998887655544
No 115
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=48.21 E-value=54 Score=21.28 Aligned_cols=51 Identities=6% Similarity=0.117 Sum_probs=39.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
......+|.+....|+..+..-+.-+...-..||..+ |-+..+|.-=+.+-
T Consensus 8 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNr 58 (70)
T 2da2_A 8 RSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL-NLPTRVIVVWFQNA 58 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCHHHhHHhhHhh
Confidence 3456789999999999999886654445568899999 78998887655443
No 116
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=48.13 E-value=42 Score=23.50 Aligned_cols=51 Identities=25% Similarity=0.423 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCC------------CchHHHHHHhCC-----CCCHHHHHHHHHHHH
Q 026855 14 TSSSWTREEDKLFERALVTFPEET------------PGRWERIARQVP-----GKSSVDVQRRYDDLV 64 (232)
Q Consensus 14 ~~~~WT~eEd~~L~~av~~~p~~~------------~~rW~~IA~~vp-----gRt~~qc~~ry~~ll 64 (232)
..+.|+++=...|.+||+.||... ..|=+.||.++- .||.+||-.|-+.+.
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk 72 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA 72 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHH
Confidence 467899888889999999998642 122255665554 467778877766553
No 117
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.91 E-value=57 Score=21.22 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=38.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
......+|.+....|+..+...+.-+...=..||..+ |-+..+|.-=+.+-
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 58 (70)
T 2djn_A 8 RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASL-GLTQTQVKIWFQNK 58 (70)
T ss_dssp CCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 3456789999999999999875543444457899999 78998887655443
No 118
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=46.45 E-value=12 Score=27.22 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=19.9
Q ss_pred CHHHHHhhhcCC-----CCHHHHHHHHHHHHHHH
Q 026855 136 DWRSISRNAVVS-----RTPTQVASHAQKYFLRM 164 (232)
Q Consensus 136 ~W~~Ia~~~v~~-----RT~~q~~~~~~ky~~~~ 164 (232)
.|..|++. ++- -...+++.+|.+|+...
T Consensus 56 ~W~~Va~~-lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 56 QWKHIYDE-LGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp THHHHHHH-HTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred cHHHHHHH-hCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 89999995 442 12468999999986443
No 119
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.48 E-value=68 Score=21.37 Aligned_cols=51 Identities=8% Similarity=0.149 Sum_probs=39.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
......+|.+....|+..+...+.-+...-..||..+ |-+..+|.-=+.+-
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 58 (80)
T 2dmq_A 8 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT-GLTKRVLQVWFQNA 58 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHhhHccHHH
Confidence 3456789999999999999886654445568899999 78998887554433
No 120
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=44.39 E-value=62 Score=20.94 Aligned_cols=50 Identities=6% Similarity=0.126 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
.....+|.+....|+..+..-+.-+...=..||..+ |-+..+|.-=+.+-
T Consensus 9 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNr 58 (70)
T 2da1_A 9 RPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS-GLPQKVIKHWFRNT 58 (70)
T ss_dssp SCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh-CCCHHHHHHHhhhh
Confidence 456789999999999999876544555678899999 78998887655443
No 121
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=43.77 E-value=31 Score=27.36 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCHHHHHHHH
Q 026855 9 SYSASTSSSWTREEDKLFE 27 (232)
Q Consensus 9 ~~~~~~~~~WT~eEd~~L~ 27 (232)
..+.+..+-||.|+|+.|+
T Consensus 108 giP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 108 NPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp SSCTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCCCChhhHHHHH
Confidence 3455668899999999885
No 122
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=43.54 E-value=24 Score=26.43 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=28.1
Q ss_pred HHHHHHHHhC-------CCCHHHHHhhhcCC-C----CHHHHHHHHHHHHHHHcc
Q 026855 124 LFLIGLEKYG-------KGDWRSISRNAVVS-R----TPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 124 ~l~~~l~~~G-------~g~W~~Ia~~~v~~-R----T~~q~~~~~~ky~~~~~~ 166 (232)
.|-..|.+.| ...|..||.. ++- . ....++.||.+|+.....
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~-lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADM-LRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHH-TCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHH-hCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 4555666666 1289999995 421 2 246899999999766554
No 123
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=43.52 E-value=71 Score=21.37 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=37.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHH
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYD 61 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~ 61 (232)
......+|.+.+..|+..+..-+.-+...=..||..+ |-+..+|.-=+.
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFq 56 (80)
T 2cue_A 8 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI-DLPEARIQVWFS 56 (80)
T ss_dssp CCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CCCHHHhhHHHH
Confidence 3456789999999999999875543444568899999 789988865443
No 124
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=43.15 E-value=14 Score=26.15 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=20.1
Q ss_pred CHHHHHhhhcCC-C---CHHHHHHHHHHHHHHH
Q 026855 136 DWRSISRNAVVS-R---TPTQVASHAQKYFLRM 164 (232)
Q Consensus 136 ~W~~Ia~~~v~~-R---T~~q~~~~~~ky~~~~ 164 (232)
.|..|++. ++- . ...+++.+|.+|+...
T Consensus 59 ~W~~v~~~-lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 59 KWSKVGSR-LGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp THHHHHHH-HTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred cHHHHHHH-hCCCCcCcHHHHHHHHHHHHHHHH
Confidence 89999995 432 1 2568999999886544
No 125
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.99 E-value=66 Score=20.82 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=37.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
++|.....=+++....|++.+..-+.-+...=..||..+ |-+..+|.-=+.+
T Consensus 2 ~sg~~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~L~e~qVqvWFqN 53 (64)
T 2e19_A 2 SSGSSGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSV-NLPLDVVKKWFEK 53 (64)
T ss_dssp CCSCSCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcChhhcCcchhc
Confidence 456666777899999999999775433333456789999 7888887654443
No 126
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=41.83 E-value=34 Score=26.23 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=26.9
Q ss_pred HHHHHHHHhC-------CCCHHHHHhhhcCC-C----CHHHHHHHHHHHHHHHcc
Q 026855 124 LFLIGLEKYG-------KGDWRSISRNAVVS-R----TPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 124 ~l~~~l~~~G-------~g~W~~Ia~~~v~~-R----T~~q~~~~~~ky~~~~~~ 166 (232)
.|-.+|.+.| ...|..|++. ++- . ...+++.+|.+|+.....
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~-lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKG-LNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHH-TTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHH-hCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 3445555555 1289999995 432 1 246899999999655443
No 127
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=41.13 E-value=44 Score=25.48 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCCCCCCcccccCCccCCC
Q 026855 22 EDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVE-LPGYEDEMDSPGRVAESGASLGNN 100 (232)
Q Consensus 22 Ed~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~-~p~~~~~~~~~~~~~~~~~~~~~~ 100 (232)
-|..+.++++.-+.- .|..||+.+ |-|...|+.|.+.|.+ .|-+. +-...+.. ..
T Consensus 4 ~d~~il~~L~~~~~~---s~~~la~~l-g~s~~tv~~rl~~L~~------~g~i~~~~a~~~~~--------------~l 59 (162)
T 3i4p_A 4 LDRKILRILQEDSTL---AVADLAKKV-GLSTTPCWRRIQKMEE------DGVIRRRVALLDPV--------------KV 59 (162)
T ss_dssp HHHHHHHHHTTCSCS---CHHHHHHHH-TCCHHHHHHHHHHHHH------TTSSCCCCCCCCTT--------------TT
T ss_pred HHHHHHHHHHHCCCC---CHHHHHHHH-CcCHHHHHHHHHHHHH------CCCeeeceeeeCHH--------------Hh
Confidence 455667777765443 499999999 8999999999999866 33222 11000100 00
Q ss_pred CCCCCcccccccCCCCCCHHHHHHHHHHHHHhCC--------CCHHHHHhhhcCCCCHHHHHHHHHH
Q 026855 101 SNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGK--------GDWRSISRNAVVSRTPTQVASHAQK 159 (232)
Q Consensus 101 ~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~--------g~W~~Ia~~~v~~RT~~q~~~~~~k 159 (232)
|...... -..+-.+=..+.-..|.+.|..++. |+|.-+.. |-.++..++......
T Consensus 60 G~~~~a~--v~v~v~~~~~~~~~~~~~~l~~~peV~~~~~vtG~~D~~l~--v~~~d~~~l~~~l~~ 122 (162)
T 3i4p_A 60 NTKVTVF--VSIRTASHSIEWLKRFSEVVSEFPEVVEFYRMSGDVDYLLR--VVVPDIAAYDAFYKR 122 (162)
T ss_dssp TCCEEEE--EEEECCSCCHHHHHHHHHHHHHCTTEEEEEECCSSCSEEEE--EEESSHHHHHHHHHH
T ss_pred cCcEEEE--EEEEEcCCChHHHHHHHHHHhcCCCEEEeeecCCCCCEEEE--EEECCHHHHHHHHHH
Confidence 1000000 0001112234556788888888753 68888875 666888877774333
No 128
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=39.61 E-value=8.2 Score=29.95 Aligned_cols=21 Identities=14% Similarity=0.543 Sum_probs=17.6
Q ss_pred HHHHHHhCCCCCHHHHHHHHH
Q 026855 41 WERIARQVPGKSSVDVQRRYD 61 (232)
Q Consensus 41 W~~IA~~vpgRt~~qc~~ry~ 61 (232)
-..||..+.|||+.||++.+.
T Consensus 119 c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 119 CKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHHSSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHcC
Confidence 367899999999999998873
No 129
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.53 E-value=84 Score=20.76 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
.....+|.+.+..|+.++...+.-+...=..||..+ |-+..+|.-=+.+-
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNr 59 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSDR 59 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHHH
Confidence 346789999999999999886554555567899999 78988887655544
No 130
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=34.73 E-value=78 Score=19.75 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855 116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
..++.|...|. ..--.|. .+..||. .-+-|...|+.+.++-..++..
T Consensus 15 ~L~~~~r~il~-l~~~~g~-s~~eIA~--~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALL-LTQLLGL-SYADAAA--VCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHH-HHHTSCC-CHHHHHH--HHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHH-HHHHcCC-CHHHHHH--HHCcCHHHHHHHHHHHHHHHHH
Confidence 36655555444 4445677 9999998 3466888999887777666654
No 131
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=34.05 E-value=1e+02 Score=20.39 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=38.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHH
Q 026855 10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYD 61 (232)
Q Consensus 10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~ 61 (232)
........+|.+....|+..+..-+.-+...=..||..+ |-|..+|.-=+.
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFq 62 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL-NLTERQVKIWFQ 62 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH-CcCHHHHHHHHH
Confidence 334567789999999999999886543444457889999 789888865443
No 132
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=33.91 E-value=24 Score=24.81 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=33.0
Q ss_pred cCCCCCCHHH-----------HHHHHHHHHHhCCC----CHH---HHHhhhcCCCCHHHHHHHHHHHHHH
Q 026855 112 RKGVPWTAEE-----------HRLFLIGLEKYGKG----DWR---SISRNAVVSRTPTQVASHAQKYFLR 163 (232)
Q Consensus 112 ~~~~~WT~eE-----------d~~l~~~l~~~G~g----~W~---~Ia~~~v~~RT~~q~~~~~~ky~~~ 163 (232)
.+++.||.|+ -+-|+..|+.+|.- .|+ .|.. ..+|+...|...-|.++|..
T Consensus 11 ~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKN-VaKtanK~qLiaAY~~lfE~ 79 (88)
T 2lc3_A 11 GKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKS-IRKNRNCSQLIAAYKDFCEH 79 (88)
T ss_dssp CCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHH-HHHHSCHHHHHHHHHHHHHH
T ss_pred CccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHH-HHhcCcHHHHHHHHHHHHhc
Confidence 4567899999 34566777777642 111 1222 34478888998888887765
No 133
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=33.37 E-value=88 Score=20.68 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
....+|.+.+..|+.++...+.-+...=..||..+ |-+..+|.-=+.+-
T Consensus 20 ~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 68 (80)
T 2da3_A 20 LRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV-GLKKRVVQVWFQNT 68 (80)
T ss_dssp CCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhHHHhHHH
Confidence 34578999999999999886543444457899999 78888876655443
No 134
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.97 E-value=96 Score=22.43 Aligned_cols=37 Identities=8% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhC
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQV 48 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~v 48 (232)
......||.+....|++++..-+.-+....+.||..+
T Consensus 7 Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~l 43 (102)
T 2da6_A 7 GRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC 43 (102)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3456789999999999999875543455688999998
No 135
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=32.80 E-value=60 Score=24.15 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCC----CCchHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 026855 24 KLFERALVTFPEE----TPGRWERIARQVPGKSSVDVQRRYDDLVLDLR 68 (232)
Q Consensus 24 ~~L~~av~~~p~~----~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~ 68 (232)
-.|-.+|...|.- ....|..||..|.--.....+..|..+|....
T Consensus 51 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 51 FYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp THHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 3456666666541 14579999999975558888999998887543
No 136
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.46 E-value=1.2e+02 Score=20.75 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDL 67 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~ 67 (232)
.-.||.++.+.+...+.. .+ +-.|=..-++-|..+++..|..+....
T Consensus 9 ~~~~s~~~~~~~~~~~~~-----~~-~y~iLgv~~~as~~eIk~aYr~la~~~ 55 (90)
T 2ys8_A 9 SASFTKEQADAIRRIRNS-----KD-SWDMLGVKPGASRDEVNKAYRKLAVLL 55 (90)
T ss_dssp CCCCCHHHHHHHHHHHTC-----SS-HHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhcC-----CC-HHHHcCcCCCCCHHHHHHHHHHHHHHH
Confidence 447999999988875421 23 444444344789999999999987643
No 137
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.82 E-value=1.1e+02 Score=20.29 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
....+|.+.+..|+..+...+.-+...=..||..+ |-+..||.-=+.+-
T Consensus 20 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNR 68 (80)
T 2dmt_A 20 SRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL-GLSQLQVKTWYQNR 68 (80)
T ss_dssp SCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCHHHeeeccHHH
Confidence 35579999999999999986554444567899999 78998887655443
No 138
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=31.63 E-value=95 Score=19.33 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYD 61 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~ 61 (232)
.....+|.+....|+..+...+.-+...=..||..+ |-|..||.-=+.
T Consensus 7 r~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~-~l~~~qV~~WFq 54 (61)
T 1akh_A 7 KGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC-GITPLQVRVWFI 54 (61)
T ss_dssp -----CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH-CcCHHHHHHHHH
Confidence 345679999999999999987654545567889999 788888875443
No 139
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=31.49 E-value=93 Score=19.16 Aligned_cols=48 Identities=8% Similarity=0.110 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
....+|.+....|+..+..-+.-+...=..||..+ |-|..+|.-=+.+
T Consensus 3 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 50 (58)
T 1ig7_A 3 PRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL-SLTETQVKIWFQN 50 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHhhhhhhH
Confidence 35679999999999999886654445568899999 7899888654443
No 140
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=30.98 E-value=99 Score=19.33 Aligned_cols=48 Identities=10% Similarity=0.219 Sum_probs=36.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYD 61 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~ 61 (232)
.....+|.+....|+..+..-+.-+...=..||..+ |-|..+|.-=+.
T Consensus 5 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 52 (61)
T 2hdd_A 5 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSEL-GLNEAQIKIWFK 52 (61)
T ss_dssp --CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHhh
Confidence 346679999999999999886554445568899999 788888865443
No 141
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=30.92 E-value=1e+02 Score=19.57 Aligned_cols=49 Identities=8% Similarity=0.110 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
.....+|.+....|+..+...+.-+...=..||..+ |-|..+|.-=+.+
T Consensus 5 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 53 (66)
T 1bw5_A 5 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT-GLSPRVIRVWFQN 53 (66)
T ss_dssp CCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHHHHHhHH
Confidence 346789999999999999986654444457889998 7888888755443
No 142
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=30.56 E-value=97 Score=19.55 Aligned_cols=49 Identities=10% Similarity=0.259 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHHH---HHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERAL---VTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av---~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
.....+|.+....|+..+ ...|.-+...=..||..+ |-|..||..=+.+
T Consensus 5 r~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-~L~~~qV~~WFqN 56 (64)
T 1du6_A 5 IEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC-GITVSQVSNWFGN 56 (64)
T ss_dssp CCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 456789999999999999 443333444467889998 7899888765544
No 143
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=30.48 E-value=1e+02 Score=23.79 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 18 WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
-++-+. .+..+++..+.- .+..||+.+ |-|..-|..+.+.|.+
T Consensus 25 ld~~d~-~IL~~L~~~~~~---s~~eLA~~l-glS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 25 LDEIDK-KIIKILQNDGKA---PLREISKIT-GLAESTIHERIRKLRE 67 (171)
T ss_dssp CCHHHH-HHHHHHHHCTTC---CHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCC---CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 444444 555667775543 399999999 7999999999998865
No 144
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=30.47 E-value=54 Score=24.03 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCCC----CchHHHHHHhCCCC---C-HHHHHHHHHHHHHHHHHH
Q 026855 23 DKLFERALVTFPEET----PGRWERIARQVPGK---S-SVDVQRRYDDLVLDLRKI 70 (232)
Q Consensus 23 d~~L~~av~~~p~~~----~~rW~~IA~~vpgR---t-~~qc~~ry~~ll~~~~~i 70 (232)
+-.|-.+|...|.-. ...|..||..|.-- + ....+.+|..+|......
T Consensus 42 L~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~ 97 (117)
T 2jrz_A 42 LYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMY 97 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 345666677765411 34699999999622 2 467888898887765433
No 145
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=29.60 E-value=1.1e+02 Score=19.33 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
.....+|.+....|+..+..-+.-+...=..||..+ |-|..+|.-=+.+
T Consensus 5 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 53 (63)
T 2h1k_A 5 RTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML-NLTERHIKIWFQN 53 (63)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcCHHHhhHHHHh
Confidence 456789999999999999886544444567899999 7899888754443
No 146
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=29.57 E-value=1.1e+02 Score=19.48 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
.....+|.+....|+..+..-+.-+...=..||..+ |-|..+|.-=+.+-
T Consensus 3 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 52 (67)
T 2k40_A 3 RPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL-NLELDRIQIWFQNR 52 (67)
T ss_dssp CCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhhHhhHhH
Confidence 345679999999999999875544444567899999 78998887655443
No 147
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=29.20 E-value=1.1e+02 Score=19.11 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
....+|.+....|+..+..-+.-+...=..||..+ |-|..+|.-=+.+
T Consensus 4 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 51 (60)
T 1jgg_A 4 YRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL-NLPESTIKVWFQN 51 (60)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHhhHH
Confidence 45679999999999999886554445567899999 7888888654443
No 148
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=29.18 E-value=1.2e+02 Score=19.52 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
.....+|.+....|+..+..-+.-+...=..||..+ |-|..+|.-=+.+
T Consensus 5 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 53 (68)
T 1yz8_P 5 RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT-NLTEARVRVWFKN 53 (68)
T ss_dssp CSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT-TSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 456789999999999999875544445568999999 7899888655443
No 149
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.45 E-value=1.6e+02 Score=21.61 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 19 TREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 19 T~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
++-+. .+..+++..+.- .+..||+.+ |-|..-|..+.+.|.+
T Consensus 8 d~~d~-~il~~L~~~~~~---s~~ela~~l-g~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 8 DRVDM-QLVKILSENSRL---TYRELADIL-NTTRQRIARRIDKLKK 49 (151)
T ss_dssp CHHHH-HHHHHHHHCTTC---CHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHcCCC---CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34444 445677775543 399999999 7999999999988865
No 150
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=27.35 E-value=1.3e+02 Score=19.36 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
.....+|.+....|+..+..-+.-+...-..||..+ |-|..+|.-=+.+
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 52 (68)
T 1zq3_P 4 RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL-ALGTAQVKIWFKN 52 (68)
T ss_dssp CCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcCHHHhhHhhHH
Confidence 346679999999999999875544445568899999 7898888654443
No 151
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=27.12 E-value=1.2e+02 Score=18.90 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
...+|.+....|+..+...+.-+...=..||..+ |-|..+|.-=+.+
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 49 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI-GLTEARIQVWFQN 49 (60)
T ss_dssp --CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CcCHHHHHHHhhh
Confidence 4579999999999999886543444457889999 7898888765544
No 152
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.48 E-value=1.4e+02 Score=19.44 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
......+|.+....|+..+..-+.-+...=..||..+ |-+..+|.-=+.+-
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 57 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT-GLTKGEIKKWFSDT 57 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CcCHHHeeeCChhH
Confidence 4457789999999999999875433333457789988 78888886555443
No 153
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=25.78 E-value=1.4e+02 Score=19.44 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
......+|.+....|+..+..-+.-+...=..||..+ |-|..+|.-=+.+-
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNR 58 (73)
T 2l7z_A 8 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATT-NLSERQVTIWFQNR 58 (73)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH-TSCSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 3456789999999999999886654445568899999 78888886555443
No 154
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=25.65 E-value=1.6e+02 Score=19.90 Aligned_cols=51 Identities=12% Similarity=0.218 Sum_probs=38.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 11 SASTSSSWTREEDKLFERALVT---FPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 11 ~~~~~~~WT~eEd~~L~~av~~---~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
.......+|.+....|++.+.. .|.-+...=..||..+ |-+..||..=+.+
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~-gL~~~qV~~WFqN 80 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT-SLSRIQIKNWVSN 80 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 3345678999999999999999 5544444457789988 7899888765543
No 155
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=25.38 E-value=1.4e+02 Score=19.11 Aligned_cols=46 Identities=7% Similarity=0.075 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHc
Q 026855 117 WTAEEHRLFLIGLEK---YGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMN 165 (232)
Q Consensus 117 WT~eEd~~l~~~l~~---~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~ 165 (232)
-++.|.+.|..-+-- .|. .|..||. .-+-|...|+.+-.+-+.++.
T Consensus 11 L~~~er~il~l~~~l~~~~~~-s~~eIA~--~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDGREH-TLEEVGA--YFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHHHHHHHHTTTTSSCC-CHHHHHH--HHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCC-CHHHHHH--HHCCCHHHHHHHHHHHHHHHH
Confidence 455555555443321 455 8999998 456788888888777777776
No 156
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=25.01 E-value=1.6e+02 Score=19.80 Aligned_cols=50 Identities=6% Similarity=0.086 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHC---CCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTF---PEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~---p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
.....+|.+....|++.+..| |.-+...=..||..+ |-|..||..=+.+-
T Consensus 9 k~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~-gLs~~qV~~WFqNr 61 (83)
T 2dmn_A 9 KRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT-NLSLLQISNWFINA 61 (83)
T ss_dssp CCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH-CcCHHHhhHHhhhh
Confidence 456779999999999998875 433455568899998 89999998655443
No 157
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=24.63 E-value=1.6e+02 Score=19.56 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
.....+|.+....|+..+...+.-+...=..||..+ |-+..+|.-=+.+
T Consensus 20 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 68 (81)
T 1fjl_A 20 RSRTTFSASQLDELERAFERTQYPDIYTREELAQRT-NLTEARIQVWFQN 68 (81)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 346679999999999999886544444457899999 7999888755543
No 158
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.64 E-value=1.8e+02 Score=21.44 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 19 TREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 19 T~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
++-+. .+..+++..+.- .+..||+.+ |-|..-|..+.+.|.+
T Consensus 6 d~~~~-~il~~L~~~~~~---s~~ela~~l-g~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 6 DEIDK-KIIKILQNDGKA---PLREISKIT-GLAESTIHERIRKLRE 47 (151)
T ss_dssp CHHHH-HHHHHHHHCTTC---CHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHcCCC---CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34444 445567765543 399999999 7999999999998865
No 159
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=23.40 E-value=1.4e+02 Score=18.36 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHH
Q 026855 16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYD 61 (232)
Q Consensus 16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~ 61 (232)
..+|.+....|++.+..-+.-+...=..||..+ |-+..+|.-=+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFq 46 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKAL-RMTDAQVKTWFQ 46 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHh-CcCHHHhhHhhH
Confidence 458999999999999886544444457889998 788888865443
No 160
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.84 E-value=1.4e+02 Score=20.10 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855 122 HRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 122 d~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
++.++.+..-.|. ....||+ .-+-+...|++|..+-+.++..
T Consensus 42 ~r~vl~l~~~~g~-s~~eIA~--~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 42 HRAVIQRSYYRGW-STAQIAT--DLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp HHHHHHHHHTSCC-CHHHHHH--HHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHH--HHCcCHHHHHHHHHHHHHHHHH
Confidence 3334444445576 8899997 4567888888877776666654
No 161
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=22.63 E-value=1.9e+02 Score=19.89 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=32.9
Q ss_pred HHHHH-HHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 20 REEDK-LFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 20 ~eEd~-~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
.+|.+ .+..++..||.|-. =+.++..+|+-+..+..+--..|+.
T Consensus 12 ~~~ie~~IL~l~~~~P~GIt--d~~L~~~~p~~~~~~r~~aIN~LL~ 56 (81)
T 2dk8_A 12 PVEIENRIIELCHQFPHGIT--DQVIQNEMPHIEAQQRAVAINRLLS 56 (81)
T ss_dssp HHHHHHHHHHHHHHCSSCEE--HHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCC--HHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 44433 57888999998743 5779999999899887777666665
No 162
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.90 E-value=1e+02 Score=23.24 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 026855 120 EEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKY 160 (232)
Q Consensus 120 eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky 160 (232)
+-|+.+|..|++-|.=.|..||+. + |-|...|+.|.+++
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~-l-g~s~~tv~~rl~~L 41 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKK-V-GLSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHH-H-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHH-H-CcCHHHHHHHHHHH
Confidence 458899999999888789999983 4 67899999976654
No 163
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=21.59 E-value=1.4e+02 Score=21.64 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q 026855 116 PWTAEEHRLFLIGLEKYGK 134 (232)
Q Consensus 116 ~WT~eEd~~l~~~l~~~G~ 134 (232)
.-+++|+..|+.+|..++.
T Consensus 36 ~l~~~d~~~l~~lL~~HP~ 54 (104)
T 2k0m_A 36 IVSTVDGAFLVEALKRHPD 54 (104)
T ss_dssp ECCHHHHHHHHHHHHTSTT
T ss_pred ccCHHHHHHHHHHHHhCCc
Confidence 5778888888888887765
No 164
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=21.42 E-value=64 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=27.9
Q ss_pred CCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855 134 KGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 134 ~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
.|+|...|.++..+|=..|+-+|+.+...+++.
T Consensus 146 ~gd~~~Aa~Em~dSrW~kQt~~Ra~rl~~~mr~ 178 (187)
T 4e97_A 146 QKRWDEAAVNLAKSRWYNQCPDRAKRVITTFRT 178 (187)
T ss_dssp TTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhchhhccCcHHHHHHHHHHHc
Confidence 369999999888888889999999988877754
No 165
>2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein; 2.80A {Human rotavirus C}
Probab=21.37 E-value=25 Score=30.09 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHH---------HhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHccccCCCCCCCCCcccccc
Q 026855 116 PWTAEEHRLFLIGLE---------KYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVD 183 (232)
Q Consensus 116 ~WT~eEd~~l~~~l~---------~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~~~k~~kr~s~~~~~~~~ 183 (232)
|=.+.-.+.|..-|+ .||+|.|+.+-= .||++|+.+.|...+..+| +.+.++....+
T Consensus 193 pi~D~~~kelvAelRwqyNkFAvItHGkgHyRvV~y--------s~v~nHAdRv~at~ks~~K---~~~~~~f~~ld 258 (312)
T 2gu0_A 193 DIPDRNQTAFAAYIRYNFNKFAAISHGKRHWRLVLH--------SQLMSHAERLDRKIKSDKK---HGRQFSYDDGD 258 (312)
T ss_dssp CCCHHHHHHHHHHHHHHSTTEEEECSSSSEEEEEEG--------GGHHHHHHHHHHHHHCCC----------CCCTT
T ss_pred cCchHHHHHHHHHHHHhhcceEEEecCCccEEEEeh--------HHhhhhHHHHHHHHhhhhh---cCCCccccccc
Confidence 444545555555544 258888887752 6899999999999988744 33444444433
No 166
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=20.82 E-value=1.6e+02 Score=18.19 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHH---CCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855 15 SSSWTREEDKLFERALVT---FPEETPGRWERIARQVPGKSSVDVQRRYDD 62 (232)
Q Consensus 15 ~~~WT~eEd~~L~~av~~---~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ 62 (232)
...+|.+....|++.+.. .|.-+...=..||..+ |-|..||..=+.+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-gl~~~qV~~WFqN 51 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT-SLSRIQIKNWVSN 51 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 357899999999999988 5543444457889998 7899888765543
No 167
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=20.67 E-value=1.3e+02 Score=18.88 Aligned_cols=32 Identities=6% Similarity=0.096 Sum_probs=24.5
Q ss_pred hCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855 132 YGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166 (232)
Q Consensus 132 ~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~ 166 (232)
.|. .+..||+ .-+-|...|+.+..+-+.++..
T Consensus 24 ~g~-s~~eIA~--~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 24 TDY-TLEEVGK--QFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp SCC-CHHHHHH--HHTCCHHHHHHHHHHHHHGGGS
T ss_pred CCC-CHHHHHH--HHCcCHHHHHHHHHHHHHHHHH
Confidence 366 8999998 4578899999987776666654
No 168
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=20.24 E-value=1.9e+02 Score=18.93 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63 (232)
Q Consensus 13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l 63 (232)
.....+|.+.+..|+..+..-+.-+...=..||..+ |-|..+|.-=+.+-
T Consensus 11 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNR 60 (77)
T 1nk2_P 11 KRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI-RLTPTQVKIWFQNH 60 (77)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh-CCCHHHHHHHhHHh
Confidence 345679999999999999886554444568899999 78998886555443
No 169
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=20.04 E-value=2e+02 Score=21.16 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855 23 DKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL 65 (232)
Q Consensus 23 d~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~ 65 (232)
|..+..+++..+.- .+..||+.+ |-|..-|..+.+.|.+
T Consensus 10 d~~il~~L~~~~~~---s~~ela~~l-g~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 10 DRGILEALMGNART---AYAELAKQF-GVSPETIHVRVEKMKQ 48 (152)
T ss_dssp HHHHHHHHHHCTTS---CHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34455677775543 399999999 8999999999998865
Done!