BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026858
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%)
Query: 89 GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148
G+A ++ D V L N + N + + V+ +D+I L+ PF+ A
Sbjct: 122 GMAAVIGLDEERVRELLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPFEAAGAKKY 181
Query: 149 VYIEESAAQLVRAMEALVADDGVVLLGYQLRSPE 182
+ SAA R M + + G L GY P+
Sbjct: 182 TVLRVSAAFHSRFMRPAMVEFGRFLEGYDFAPPK 215
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%)
Query: 89 GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148
G+A ++ D V L N + N + + V+ +D+I L+ PF+ A
Sbjct: 122 GMAAVIGLDEERVRELLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPFEAAGAKKY 181
Query: 149 VYIEESAAQLVRAMEALVADDGVVLLGYQLRSPE 182
+ SAA R M + + G L GY P+
Sbjct: 182 TVLRVSAAFHSRFMRPAMVEFGRFLEGYDFAPPK 215
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 72 IELGAGCGAAGMAFYLLGLADIVLTDI--SPVMPALKHNLKR-------NKPVLNKSLKT 122
ELGAG G + +L G +V TD ++ +L+ N++ ++ V S K
Sbjct: 84 CELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV 143
Query: 123 SVLYWNNQ----DQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVA 167
W + + L+ F +V+ AD++ ++ L+R+++ L+A
Sbjct: 144 VPYRWGDSPDSLQRCTGLQ-RFQVVLLADLLSFHQAHDALLRSVKXLLA 191
>pdb|2RGH|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 571
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 130 QDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVAD 168
+DQ++ +K P IA + EE AQ + +EAL+A+
Sbjct: 523 RDQLDEIKQPVIDAIAEYFGWTEEEKAQQTKRLEALIAE 561
>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 607
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 130 QDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVAD 168
+DQ++ +K P IA + EE AQ + +EAL+A+
Sbjct: 559 RDQLDEIKQPVIDAIAEYFGWTEEEKAQQTKRLEALIAE 597
>pdb|3EWK|A Chain A, Structure Of The Redox Sensor Domain Of Methylococcus
Capsulatus (Bath) Mmos
Length = 227
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 121 KTSVLYWNNQDQI----NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLL 174
K YW + + NA KP + I D+ +E+ AQL R +A+ A+ ++LL
Sbjct: 69 KDGTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARLKQAMDANSEMILL 126
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 8 VIELPIRDALLSIQQDNG---SMHVGTS---VWPCS----LVLAKFVERWAPLPNTATNP 57
I++ + + SI++ NG +H+ +S W L+L F PL
Sbjct: 216 TIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLEL 275
Query: 58 YSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKP 114
Y + L S + +++ G AAG Y G I+ T +S A++H+L KP
Sbjct: 276 YENALVVDSHMKTSVD---GLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYIKP 329
>pdb|3C8W|A Chain A, Crystal Structure Of Acetoacetate Decarboxylase (Adc)
(Yp_094708.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.60 A Resolution
pdb|3C8W|B Chain B, Crystal Structure Of Acetoacetate Decarboxylase (Adc)
(Yp_094708.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.60 A Resolution
pdb|3C8W|C Chain C, Crystal Structure Of Acetoacetate Decarboxylase (Adc)
(Yp_094708.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.60 A Resolution
pdb|3C8W|D Chain D, Crystal Structure Of Acetoacetate Decarboxylase (Adc)
(Yp_094708.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.60 A Resolution
Length = 255
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEK 199
F +A +++EE L+ ++ D + GY+ R +A K+ + VFL++
Sbjct: 124 FPXKLAKPKLFVEEDT--LIGILKYGSIDIAIATXGYKHRPLDAEKVLESVKKPVFLLKN 181
Query: 200 VPHEDLHP 207
+P+ D P
Sbjct: 182 IPNVDGTP 189
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 142 LVIAADVVYIEESAAQLVRAMEALVADDG 170
+ AD+VY+ +SA +L+RA+ +V + G
Sbjct: 674 FALMADMVYVTQSAGRLMRAIFEIVLNRG 702
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,624,678
Number of Sequences: 62578
Number of extensions: 256118
Number of successful extensions: 603
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 598
Number of HSP's gapped (non-prelim): 10
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)