Query 026858
Match_columns 232
No_of_seqs 158 out of 2224
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 13:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 99.9 1.2E-26 2.6E-31 181.4 11.4 169 14-193 2-172 (173)
2 PF06325 PrmA: Ribosomal prote 99.8 2.5E-18 5.5E-23 144.1 14.9 162 8-201 120-282 (295)
3 COG2264 PrmA Ribosomal protein 99.8 6.7E-18 1.4E-22 140.5 15.4 164 8-201 121-287 (300)
4 PF05175 MTS: Methyltransferas 99.7 2E-16 4.2E-21 123.5 17.7 136 17-179 1-143 (170)
5 PRK15001 SAM-dependent 23S rib 99.7 1.8E-16 3.9E-21 137.3 18.8 178 8-222 189-374 (378)
6 COG2813 RsmC 16S RNA G1207 met 99.7 1.9E-16 4.1E-21 131.2 16.5 173 8-221 119-299 (300)
7 COG4123 Predicted O-methyltran 99.7 6.8E-16 1.5E-20 125.4 17.6 164 9-201 9-193 (248)
8 KOG3201 Uncharacterized conser 99.7 1.1E-17 2.5E-22 125.3 6.3 159 26-202 2-166 (201)
9 TIGR00406 prmA ribosomal prote 99.7 6.6E-16 1.4E-20 130.2 16.5 164 8-201 118-282 (288)
10 COG2227 UbiG 2-polyprenyl-3-me 99.7 6.2E-16 1.3E-20 123.9 10.4 109 64-182 58-167 (243)
11 PRK00517 prmA ribosomal protei 99.6 1.8E-14 3.9E-19 119.2 17.7 157 8-201 79-237 (250)
12 KOG2793 Putative N2,N2-dimethy 99.6 9.2E-15 2E-19 118.9 15.1 171 26-201 49-227 (248)
13 PRK09489 rsmC 16S ribosomal RN 99.6 2.8E-14 6E-19 122.8 18.0 172 8-223 159-338 (342)
14 KOG1270 Methyltransferases [Co 99.6 6E-16 1.3E-20 124.9 7.0 105 66-180 90-199 (282)
15 PF12847 Methyltransf_18: Meth 99.6 3.9E-15 8.5E-20 107.7 9.9 104 65-176 1-111 (112)
16 TIGR00537 hemK_rel_arch HemK-r 99.6 7.9E-14 1.7E-18 109.6 17.8 126 65-204 19-167 (179)
17 PRK00107 gidB 16S rRNA methylt 99.6 9.9E-14 2.2E-18 109.6 17.2 139 66-222 46-187 (187)
18 COG2226 UbiE Methylase involve 99.6 3.1E-14 6.7E-19 115.7 12.2 108 65-180 51-160 (238)
19 PF13847 Methyltransf_31: Meth 99.6 1E-13 2.2E-18 106.0 13.4 106 70-180 6-114 (152)
20 PLN02396 hexaprenyldihydroxybe 99.6 2.4E-14 5.2E-19 121.9 10.9 108 65-180 131-239 (322)
21 TIGR00477 tehB tellurite resis 99.5 1E-13 2.2E-18 110.6 13.0 100 65-175 30-132 (195)
22 PLN02244 tocopherol O-methyltr 99.5 1.5E-13 3.3E-18 118.5 14.9 105 64-176 117-223 (340)
23 PF08241 Methyltransf_11: Meth 99.5 3.2E-14 7E-19 99.3 8.8 94 72-174 1-95 (95)
24 TIGR00138 gidB 16S rRNA methyl 99.5 3.9E-13 8.5E-18 105.8 15.6 126 65-203 42-170 (181)
25 PRK14967 putative methyltransf 99.5 7.1E-13 1.5E-17 107.8 17.5 155 18-202 7-184 (223)
26 PRK11036 putative S-adenosyl-L 99.5 9.2E-14 2E-18 115.3 12.1 106 70-180 47-153 (255)
27 PRK11207 tellurite resistance 99.5 1.8E-13 3.9E-18 109.2 13.0 101 65-175 30-133 (197)
28 COG3897 Predicted methyltransf 99.5 4.1E-14 8.9E-19 109.6 8.6 132 26-182 53-185 (218)
29 PF01209 Ubie_methyltran: ubiE 99.5 1.2E-13 2.7E-18 112.8 11.5 108 65-180 47-157 (233)
30 PLN02233 ubiquinone biosynthes 99.5 4E-13 8.6E-18 111.8 14.6 110 65-179 73-185 (261)
31 PRK14968 putative methyltransf 99.5 1.6E-12 3.4E-17 102.5 17.1 157 33-220 8-187 (188)
32 TIGR00452 methyltransferase, p 99.5 4.5E-13 9.8E-18 113.7 13.7 107 63-176 119-225 (314)
33 PRK15068 tRNA mo(5)U34 methylt 99.5 7E-13 1.5E-17 113.4 13.9 105 64-176 121-226 (322)
34 PF13489 Methyltransf_23: Meth 99.5 4.8E-13 1E-17 102.6 11.3 98 65-180 22-119 (161)
35 PF02353 CMAS: Mycolic acid cy 99.5 1.1E-12 2.3E-17 109.6 13.8 103 63-176 60-166 (273)
36 COG2230 Cfa Cyclopropane fatty 99.5 9.7E-13 2.1E-17 108.9 13.1 120 36-179 56-179 (283)
37 smart00828 PKS_MT Methyltransf 99.5 1.3E-12 2.8E-17 106.2 13.6 126 70-201 2-143 (224)
38 PTZ00098 phosphoethanolamine N 99.5 9.6E-13 2.1E-17 109.6 13.0 104 63-177 50-157 (263)
39 PRK12335 tellurite resistance 99.5 8.5E-13 1.8E-17 111.3 12.2 125 65-201 120-258 (287)
40 PF08242 Methyltransf_12: Meth 99.5 2.7E-14 5.8E-19 101.3 2.5 96 72-172 1-99 (99)
41 PRK11783 rlmL 23S rRNA m(2)G24 99.4 1.2E-11 2.6E-16 115.9 20.1 149 65-220 538-700 (702)
42 PF03848 TehB: Tellurite resis 99.4 1.3E-12 2.8E-17 103.0 11.4 101 65-176 30-133 (192)
43 PRK10258 biotin biosynthesis p 99.4 1.9E-12 4.2E-17 107.0 12.8 101 65-179 42-143 (251)
44 PRK14103 trans-aconitate 2-met 99.4 2.2E-12 4.7E-17 107.0 11.3 95 65-176 29-126 (255)
45 TIGR02752 MenG_heptapren 2-hep 99.4 7.6E-12 1.6E-16 102.1 14.3 106 64-177 44-152 (231)
46 PLN02336 phosphoethanolamine N 99.4 5.8E-12 1.3E-16 113.4 14.4 104 65-178 266-371 (475)
47 PRK15451 tRNA cmo(5)U34 methyl 99.4 4.6E-12 1E-16 104.6 12.4 106 65-179 56-167 (247)
48 PRK01683 trans-aconitate 2-met 99.4 9.9E-12 2.2E-16 103.1 13.7 99 64-176 30-130 (258)
49 PRK00216 ubiE ubiquinone/menaq 99.4 6E-11 1.3E-15 96.9 18.1 106 65-177 51-159 (239)
50 PRK08287 cobalt-precorrin-6Y C 99.4 5.5E-11 1.2E-15 94.1 17.0 116 65-195 31-149 (187)
51 PRK04266 fibrillarin; Provisio 99.4 8.5E-11 1.8E-15 95.6 18.0 131 63-202 70-210 (226)
52 PRK00121 trmB tRNA (guanine-N( 99.4 6.9E-12 1.5E-16 100.5 11.3 126 65-198 40-177 (202)
53 PLN02490 MPBQ/MSBQ methyltrans 99.4 1.2E-11 2.7E-16 105.9 13.3 127 65-202 113-256 (340)
54 TIGR03533 L3_gln_methyl protei 99.4 5.2E-11 1.1E-15 100.2 16.7 121 70-200 124-272 (284)
55 PRK11873 arsM arsenite S-adeno 99.4 1.6E-11 3.5E-16 102.7 13.5 106 63-176 75-183 (272)
56 KOG4300 Predicted methyltransf 99.4 7E-12 1.5E-16 98.1 10.3 117 68-190 77-197 (252)
57 PRK08317 hypothetical protein; 99.4 2.3E-11 5E-16 99.1 14.1 105 63-176 17-124 (241)
58 COG2890 HemK Methylase of poly 99.4 1.1E-10 2.5E-15 97.8 18.3 112 70-192 113-251 (280)
59 PF08003 Methyltransf_9: Prote 99.3 1.9E-11 4.2E-16 101.6 12.1 104 63-175 113-218 (315)
60 TIGR03704 PrmC_rel_meth putati 99.3 8.5E-11 1.8E-15 97.2 16.0 159 18-204 55-242 (251)
61 PRK00377 cbiT cobalt-precorrin 99.3 1.4E-10 3.1E-15 92.6 16.7 125 63-198 38-166 (198)
62 PF13659 Methyltransf_26: Meth 99.3 5.3E-12 1.1E-16 92.0 7.7 105 70-177 3-116 (117)
63 TIGR00740 methyltransferase, p 99.3 1.9E-11 4.1E-16 100.4 11.9 106 65-179 53-164 (239)
64 PRK15128 23S rRNA m(5)C1962 me 99.3 1.3E-10 2.7E-15 102.0 17.6 140 65-208 220-375 (396)
65 PRK05134 bifunctional 3-demeth 99.3 2.8E-11 6E-16 98.9 12.7 108 63-179 46-154 (233)
66 PF05401 NodS: Nodulation prot 99.3 6E-12 1.3E-16 98.5 8.2 120 70-200 46-178 (201)
67 PRK13944 protein-L-isoaspartat 99.3 4.6E-11 1E-15 95.9 13.5 101 63-176 70-173 (205)
68 TIGR02469 CbiT precorrin-6Y C5 99.3 1E-10 2.3E-15 85.7 14.4 103 64-176 18-122 (124)
69 PRK14966 unknown domain/N5-glu 99.3 2.6E-10 5.7E-15 99.5 18.3 140 35-200 236-403 (423)
70 TIGR00536 hemK_fam HemK family 99.3 1.4E-10 3.1E-15 97.7 16.1 102 70-177 117-245 (284)
71 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.6E-10 3.6E-15 93.2 15.6 137 65-206 34-191 (213)
72 KOG1540 Ubiquinone biosynthesi 99.3 9.1E-11 2E-15 94.7 13.7 108 69-179 102-217 (296)
73 PRK13255 thiopurine S-methyltr 99.3 2.5E-10 5.5E-15 92.4 16.6 135 65-204 37-192 (218)
74 PRK11805 N5-glutamine S-adenos 99.3 7.6E-11 1.6E-15 100.2 13.7 121 70-200 136-284 (307)
75 PF13649 Methyltransf_25: Meth 99.3 8.7E-12 1.9E-16 88.7 6.7 93 71-170 1-101 (101)
76 PRK10909 rsmD 16S rRNA m(2)G96 99.3 1.6E-10 3.5E-15 92.1 14.4 142 65-228 53-197 (199)
77 PRK09328 N5-glutamine S-adenos 99.3 2E-10 4.3E-15 96.1 15.2 138 34-196 90-256 (275)
78 TIGR02072 BioC biotin biosynth 99.3 8.6E-11 1.9E-15 95.8 12.6 98 70-177 37-136 (240)
79 TIGR00091 tRNA (guanine-N(7)-) 99.3 7.7E-11 1.7E-15 93.8 11.9 124 70-198 19-154 (194)
80 TIGR03534 RF_mod_PrmC protein- 99.3 3.1E-10 6.7E-15 93.5 15.8 139 33-197 69-236 (251)
81 TIGR02716 C20_methyl_CrtF C-20 99.3 1.4E-10 3E-15 98.8 14.0 104 65-177 149-255 (306)
82 TIGR00080 pimt protein-L-isoas 99.3 1.3E-10 2.9E-15 93.9 13.0 100 63-176 75-177 (215)
83 PRK11188 rrmJ 23S rRNA methylt 99.3 6.5E-10 1.4E-14 89.5 16.7 120 64-200 50-187 (209)
84 TIGR01177 conserved hypothetic 99.2 2.5E-10 5.4E-15 98.2 14.9 108 64-180 181-298 (329)
85 KOG1271 Methyltransferases [Ge 99.2 1.9E-10 4.2E-15 88.4 12.5 150 30-198 38-201 (227)
86 PRK11705 cyclopropane fatty ac 99.2 1.1E-10 2.4E-15 102.1 12.8 99 63-176 165-267 (383)
87 KOG1499 Protein arginine N-met 99.2 3E-11 6.4E-16 101.8 8.4 104 63-173 58-164 (346)
88 COG4976 Predicted methyltransf 99.2 1.4E-11 3E-16 97.9 5.9 128 70-208 128-271 (287)
89 PRK01544 bifunctional N5-gluta 99.2 3.7E-10 7.9E-15 102.2 15.8 122 70-200 141-291 (506)
90 PTZ00146 fibrillarin; Provisio 99.2 2.5E-09 5.5E-14 89.3 19.5 154 29-201 105-270 (293)
91 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 3E-10 6.6E-15 91.7 13.8 104 65-178 39-145 (223)
92 TIGR01983 UbiG ubiquinone bios 99.2 1.7E-10 3.7E-15 93.6 12.3 107 65-179 45-152 (224)
93 PRK13942 protein-L-isoaspartat 99.2 2.8E-10 6E-15 91.9 13.0 114 36-176 60-176 (212)
94 COG1092 Predicted SAM-dependen 99.2 5.9E-10 1.3E-14 96.9 15.8 157 33-209 201-373 (393)
95 COG2242 CobL Precorrin-6B meth 99.2 7.3E-10 1.6E-14 86.1 14.6 125 63-201 32-160 (187)
96 PRK05785 hypothetical protein; 99.2 4.5E-10 9.8E-15 91.5 14.2 85 70-169 54-140 (226)
97 TIGR02021 BchM-ChlM magnesium 99.2 2.2E-10 4.8E-15 92.8 12.1 99 65-174 55-156 (219)
98 PRK06922 hypothetical protein; 99.2 1.5E-10 3.3E-15 105.5 11.8 106 65-177 418-538 (677)
99 COG2263 Predicted RNA methylas 99.2 2.7E-09 5.9E-14 82.8 16.8 76 63-150 43-119 (198)
100 COG4106 Tam Trans-aconitate me 99.2 1.2E-10 2.5E-15 92.0 9.4 99 70-179 33-132 (257)
101 PRK07402 precorrin-6B methylas 99.2 3.8E-09 8.2E-14 84.2 18.1 127 64-201 39-169 (196)
102 PF10672 Methyltrans_SAM: S-ad 99.2 3E-10 6.4E-15 95.1 11.9 180 8-210 85-272 (286)
103 PRK00312 pcm protein-L-isoaspa 99.2 8E-10 1.7E-14 89.1 13.9 100 63-177 76-176 (212)
104 KOG2361 Predicted methyltransf 99.2 9.9E-11 2.1E-15 93.8 8.2 115 70-189 74-196 (264)
105 PLN02336 phosphoethanolamine N 99.2 2.7E-10 5.8E-15 102.6 12.2 103 65-176 37-142 (475)
106 TIGR00438 rrmJ cell division p 99.2 3.6E-09 7.7E-14 83.8 16.9 117 63-196 30-164 (188)
107 PLN03075 nicotianamine synthas 99.2 4.6E-10 9.9E-15 94.1 12.3 106 65-176 123-233 (296)
108 PRK13168 rumA 23S rRNA m(5)U19 99.2 9.4E-10 2E-14 98.2 14.9 143 37-204 282-426 (443)
109 TIGR03587 Pse_Me-ase pseudamin 99.2 1.8E-09 3.8E-14 86.7 15.0 96 65-176 43-142 (204)
110 smart00138 MeTrc Methyltransfe 99.2 7.6E-11 1.6E-15 98.2 7.1 106 68-176 100-242 (264)
111 PLN02585 magnesium protoporphy 99.2 1.7E-09 3.7E-14 92.1 15.3 101 65-176 144-249 (315)
112 KOG3191 Predicted N6-DNA-methy 99.1 2.4E-09 5.3E-14 82.3 14.4 161 35-221 23-208 (209)
113 KOG1500 Protein arginine N-met 99.1 2.1E-10 4.6E-15 95.9 9.1 103 63-174 175-280 (517)
114 cd02440 AdoMet_MTases S-adenos 99.1 7.9E-10 1.7E-14 77.2 10.7 101 70-175 1-103 (107)
115 TIGR00095 RNA methyltransferas 99.1 6.4E-10 1.4E-14 88.1 11.1 108 64-176 48-159 (189)
116 PRK14121 tRNA (guanine-N(7)-)- 99.1 3.9E-09 8.4E-14 91.6 15.6 107 70-180 125-239 (390)
117 PRK07580 Mg-protoporphyrin IX 99.1 7.8E-10 1.7E-14 90.0 10.6 96 65-171 63-161 (230)
118 PF07021 MetW: Methionine bios 99.1 6.1E-10 1.3E-14 87.0 9.0 100 65-180 13-113 (193)
119 PRK06202 hypothetical protein; 99.1 3E-09 6.5E-14 87.0 13.6 100 70-180 63-170 (232)
120 PLN02672 methionine S-methyltr 99.1 4.4E-09 9.4E-14 101.4 16.0 151 35-204 100-305 (1082)
121 KOG1541 Predicted protein carb 99.1 3.5E-09 7.5E-14 83.9 12.7 118 68-195 51-180 (270)
122 PRK03522 rumB 23S rRNA methylu 99.1 6.1E-09 1.3E-13 89.0 15.4 125 65-204 173-298 (315)
123 KOG2904 Predicted methyltransf 99.1 5.7E-09 1.2E-13 85.2 14.0 122 70-193 151-304 (328)
124 TIGR02085 meth_trns_rumB 23S r 99.1 6.9E-09 1.5E-13 90.7 15.6 125 65-204 233-358 (374)
125 PRK14901 16S rRNA methyltransf 99.1 2.1E-08 4.5E-13 89.4 18.8 130 64-198 251-409 (434)
126 PRK13256 thiopurine S-methyltr 99.1 1.9E-08 4.2E-13 81.5 16.8 136 65-203 43-198 (226)
127 smart00650 rADc Ribosomal RNA 99.1 3.2E-09 6.9E-14 82.6 11.8 98 64-175 12-112 (169)
128 TIGR03438 probable methyltrans 99.0 2.4E-09 5.1E-14 91.0 11.5 108 65-177 63-178 (301)
129 PRK11088 rrmA 23S rRNA methylt 99.0 3.7E-09 8E-14 88.6 12.3 93 70-180 88-185 (272)
130 PLN02781 Probable caffeoyl-CoA 99.0 1.8E-09 3.9E-14 88.5 9.8 104 65-175 68-177 (234)
131 COG2518 Pcm Protein-L-isoaspar 99.0 5E-09 1.1E-13 83.1 11.2 99 63-176 70-169 (209)
132 TIGR00479 rumA 23S rRNA (uraci 99.0 1.4E-08 3E-13 90.4 15.4 129 64-204 291-422 (431)
133 PHA03411 putative methyltransf 99.0 7.1E-09 1.5E-13 85.8 12.4 118 70-199 67-211 (279)
134 PRK14902 16S rRNA methyltransf 99.0 1.5E-08 3.3E-13 90.6 15.4 130 65-201 250-407 (444)
135 TIGR00446 nop2p NOL1/NOP2/sun 99.0 1.9E-08 4E-13 83.9 14.9 110 65-182 71-205 (264)
136 PF05724 TPMT: Thiopurine S-me 99.0 8E-09 1.7E-13 83.6 12.2 167 37-222 23-218 (218)
137 PRK10901 16S rRNA methyltransf 99.0 1.4E-08 3E-13 90.4 14.3 128 65-199 244-398 (427)
138 PRK14904 16S rRNA methyltransf 99.0 3E-08 6.4E-13 88.7 15.9 108 65-181 250-382 (445)
139 PRK04457 spermidine synthase; 99.0 7.4E-09 1.6E-13 86.2 11.2 121 70-196 69-196 (262)
140 COG2519 GCD14 tRNA(1-methylade 99.0 2.9E-08 6.3E-13 80.6 14.0 104 63-179 92-198 (256)
141 KOG2920 Predicted methyltransf 99.0 4.4E-10 9.5E-15 92.4 3.4 141 25-180 86-238 (282)
142 TIGR00563 rsmB ribosomal RNA s 99.0 2.4E-08 5.1E-13 88.9 14.6 111 65-180 238-372 (426)
143 PRK05031 tRNA (uracil-5-)-meth 98.9 9.7E-08 2.1E-12 83.1 18.1 123 70-204 209-345 (362)
144 PRK14903 16S rRNA methyltransf 98.9 2.2E-08 4.7E-13 89.1 14.1 128 65-199 237-392 (431)
145 PRK13943 protein-L-isoaspartat 98.9 2.3E-08 5E-13 85.4 13.2 100 63-176 78-180 (322)
146 PRK00811 spermidine synthase; 98.9 1.8E-08 4E-13 84.8 12.4 125 70-196 79-213 (283)
147 PF03602 Cons_hypoth95: Conser 98.9 2E-09 4.3E-14 84.8 5.7 111 64-179 41-156 (183)
148 KOG2899 Predicted methyltransf 98.9 4.4E-08 9.5E-13 78.8 13.3 111 63-175 56-208 (288)
149 PRK11727 23S rRNA mA1618 methy 98.9 3.2E-08 6.9E-13 84.3 13.3 83 68-153 115-203 (321)
150 PHA03412 putative methyltransf 98.9 2.1E-08 4.6E-13 81.3 11.4 90 70-171 52-158 (241)
151 PF01135 PCMT: Protein-L-isoas 98.9 1.3E-08 2.8E-13 81.8 9.7 115 36-177 56-173 (209)
152 TIGR02143 trmA_only tRNA (urac 98.9 2.1E-07 4.4E-12 80.8 17.6 123 70-204 200-336 (353)
153 COG0742 N6-adenine-specific me 98.9 4.4E-08 9.6E-13 76.6 11.4 127 64-201 42-173 (187)
154 TIGR02081 metW methionine bios 98.8 4.7E-08 1E-12 77.7 10.9 91 65-168 13-104 (194)
155 PF06080 DUF938: Protein of un 98.8 8.2E-08 1.8E-12 76.1 12.0 121 70-192 28-162 (204)
156 PF08704 GCD14: tRNA methyltra 98.8 8E-08 1.7E-12 78.9 12.3 123 63-196 38-165 (247)
157 PF05185 PRMT5: PRMT5 arginine 98.8 3.6E-08 7.9E-13 87.7 10.4 101 65-173 186-294 (448)
158 PF00891 Methyltransf_2: O-met 98.8 6.1E-08 1.3E-12 79.7 11.0 94 70-178 103-201 (241)
159 COG4122 Predicted O-methyltran 98.8 4.6E-08 1E-12 78.6 9.9 103 65-175 59-165 (219)
160 KOG3010 Methyltransferase [Gen 98.8 1.2E-08 2.7E-13 81.9 6.3 98 70-174 36-135 (261)
161 PLN02476 O-methyltransferase 98.8 6.2E-08 1.3E-12 80.8 10.6 104 65-175 118-227 (278)
162 TIGR00478 tly hemolysin TlyA f 98.8 4.3E-08 9.3E-13 79.7 9.2 114 32-175 55-170 (228)
163 PF05148 Methyltransf_8: Hypot 98.7 4.7E-07 1E-11 71.7 13.3 144 32-223 53-199 (219)
164 PF03291 Pox_MCEL: mRNA cappin 98.7 7.3E-08 1.6E-12 82.6 9.0 131 33-178 43-188 (331)
165 PF01596 Methyltransf_3: O-met 98.7 3.6E-08 7.8E-13 79.0 6.6 104 65-175 45-154 (205)
166 TIGR00417 speE spermidine synt 98.7 1.5E-07 3.1E-12 78.8 10.5 105 70-176 75-186 (270)
167 PRK03612 spermidine synthase; 98.7 3.5E-07 7.7E-12 83.3 12.8 128 70-199 300-441 (521)
168 COG1041 Predicted DNA modifica 98.7 9.5E-07 2.1E-11 75.2 14.3 136 38-202 183-330 (347)
169 PF05219 DREV: DREV methyltran 98.7 2.4E-07 5.2E-12 75.7 10.2 91 70-175 97-187 (265)
170 PTZ00338 dimethyladenosine tra 98.6 1.6E-06 3.4E-11 73.3 15.2 79 63-151 34-113 (294)
171 PRK14896 ksgA 16S ribosomal RN 98.6 2.2E-06 4.8E-11 71.3 15.4 76 63-151 27-103 (258)
172 PRK00274 ksgA 16S ribosomal RN 98.6 2.1E-06 4.5E-11 71.9 14.6 76 63-150 40-116 (272)
173 PF12147 Methyltransf_20: Puta 98.6 1.9E-06 4.1E-11 71.5 13.9 116 65-182 133-255 (311)
174 PRK04148 hypothetical protein; 98.6 9.2E-07 2E-11 65.7 10.8 98 39-167 3-102 (134)
175 PLN02366 spermidine synthase 98.6 1.6E-06 3.5E-11 73.7 13.8 125 70-195 94-227 (308)
176 COG2520 Predicted methyltransf 98.6 4.7E-06 1E-10 71.3 16.3 105 65-180 188-293 (341)
177 KOG2940 Predicted methyltransf 98.6 1.4E-07 3E-12 75.4 6.1 99 70-176 75-174 (325)
178 PRK04338 N(2),N(2)-dimethylgua 98.6 4.7E-07 1E-11 79.2 9.9 96 70-175 60-157 (382)
179 PRK01581 speE spermidine synth 98.6 4.6E-07 1E-11 78.0 9.6 104 70-176 153-268 (374)
180 PLN02232 ubiquinone biosynthes 98.6 8E-07 1.7E-11 68.5 10.1 83 94-179 1-84 (160)
181 COG0357 GidB Predicted S-adeno 98.5 2.2E-06 4.8E-11 68.8 12.3 143 66-223 68-214 (215)
182 PF02475 Met_10: Met-10+ like- 98.5 3E-07 6.5E-12 73.3 7.0 97 65-173 101-199 (200)
183 PLN02589 caffeoyl-CoA O-methyl 98.5 1.1E-06 2.3E-11 72.4 10.4 104 65-175 79-189 (247)
184 COG2265 TrmA SAM-dependent met 98.5 3.1E-06 6.8E-11 75.0 13.3 141 37-202 278-420 (432)
185 KOG1975 mRNA cap methyltransfe 98.5 6.4E-07 1.4E-11 75.0 8.0 115 64-180 116-241 (389)
186 PF02390 Methyltransf_4: Putat 98.5 1.7E-06 3.6E-11 69.0 10.1 124 70-198 20-156 (195)
187 TIGR00755 ksgA dimethyladenosi 98.4 7.8E-06 1.7E-10 67.7 14.1 74 64-150 28-105 (253)
188 KOG3045 Predicted RNA methylas 98.4 8E-06 1.7E-10 66.6 12.3 124 68-223 181-305 (325)
189 PF02527 GidB: rRNA small subu 98.4 4.4E-06 9.5E-11 65.8 10.7 96 70-176 51-148 (184)
190 COG0220 Predicted S-adenosylme 98.4 2.2E-06 4.9E-11 69.6 9.2 109 70-181 51-169 (227)
191 COG3963 Phospholipid N-methylt 98.4 7E-06 1.5E-10 62.7 10.8 126 31-179 27-159 (194)
192 PF05958 tRNA_U5-meth_tr: tRNA 98.4 3.1E-05 6.6E-10 67.3 16.4 164 11-204 158-335 (352)
193 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.4 2.2E-06 4.8E-11 70.7 8.8 136 65-202 56-239 (256)
194 PRK11933 yebU rRNA (cytosine-C 98.3 2.2E-05 4.8E-10 70.4 15.1 114 65-185 113-251 (470)
195 TIGR00308 TRM1 tRNA(guanine-26 98.3 3.5E-06 7.6E-11 73.5 9.5 98 69-175 46-146 (374)
196 PRK10611 chemotaxis methyltran 98.3 1.8E-06 3.8E-11 72.6 6.8 106 68-176 116-262 (287)
197 PF01739 CheR: CheR methyltran 98.3 9.6E-07 2.1E-11 70.3 4.7 106 67-176 31-175 (196)
198 KOG1661 Protein-L-isoaspartate 98.3 7.3E-06 1.6E-10 64.8 9.3 101 64-175 81-192 (237)
199 PF03141 Methyltransf_29: Puta 98.3 1.8E-06 3.8E-11 76.5 6.5 133 27-179 88-222 (506)
200 KOG3420 Predicted RNA methylas 98.3 1.1E-06 2.5E-11 65.3 4.3 79 63-150 46-125 (185)
201 PF01170 UPF0020: Putative RNA 98.3 3.8E-05 8.1E-10 60.4 13.1 109 63-179 26-153 (179)
202 PLN02823 spermine synthase 98.2 1.7E-05 3.7E-10 68.2 11.3 124 70-196 106-244 (336)
203 PRK11783 rlmL 23S rRNA m(2)G24 98.2 8.5E-05 1.8E-09 70.2 16.6 153 8-177 138-348 (702)
204 COG1189 Predicted rRNA methyla 98.2 0.00011 2.4E-09 59.4 14.5 148 35-208 62-230 (245)
205 TIGR02987 met_A_Alw26 type II 98.2 9.5E-05 2.1E-09 67.6 16.1 151 69-222 33-247 (524)
206 PF09445 Methyltransf_15: RNA 98.1 5.4E-06 1.2E-10 63.8 5.5 77 70-149 2-79 (163)
207 PF05891 Methyltransf_PK: AdoM 98.1 7.1E-05 1.5E-09 59.9 11.7 128 70-203 58-202 (218)
208 PF08123 DOT1: Histone methyla 98.1 1.4E-05 2.9E-10 64.1 7.7 108 64-174 41-156 (205)
209 PF11968 DUF3321: Putative met 98.1 0.00011 2.4E-09 58.7 12.5 137 35-201 30-180 (219)
210 PF02384 N6_Mtase: N-6 DNA Met 98.1 5.9E-05 1.3E-09 64.3 11.9 156 63-223 44-234 (311)
211 COG1352 CheR Methylase of chem 98.1 4E-05 8.8E-10 63.7 9.9 109 67-179 96-244 (268)
212 COG2521 Predicted archaeal met 98.0 1.5E-05 3.3E-10 64.1 6.7 131 65-199 134-274 (287)
213 PF01269 Fibrillarin: Fibrilla 98.0 0.00087 1.9E-08 53.9 15.9 152 30-200 47-210 (229)
214 PRK00536 speE spermidine synth 98.0 0.00016 3.4E-09 60.1 12.0 115 70-196 75-193 (262)
215 COG0116 Predicted N6-adenine-s 98.0 0.00054 1.2E-08 59.4 15.4 149 8-176 140-344 (381)
216 KOG0820 Ribosomal RNA adenine 98.0 8.6E-05 1.9E-09 61.1 9.8 77 63-149 56-133 (315)
217 PF01861 DUF43: Protein of unk 97.9 0.0011 2.5E-08 53.9 15.6 151 27-200 20-176 (243)
218 PF01728 FtsJ: FtsJ-like methy 97.9 3.5E-05 7.6E-10 60.4 6.7 118 70-196 26-157 (181)
219 COG1889 NOP1 Fibrillarin-like 97.9 0.0018 3.9E-08 51.2 15.8 152 31-201 51-213 (231)
220 PF09243 Rsm22: Mitochondrial 97.9 0.00027 5.9E-09 59.3 12.3 109 63-180 31-143 (274)
221 PF07942 N2227: N2227-like pro 97.9 0.00022 4.9E-09 59.3 11.3 132 68-201 57-241 (270)
222 PF05971 Methyltransf_10: Prot 97.9 8.2E-05 1.8E-09 62.7 8.8 82 68-153 103-191 (299)
223 COG0144 Sun tRNA and rRNA cyto 97.9 0.00063 1.4E-08 59.2 14.5 133 63-200 154-315 (355)
224 COG0293 FtsJ 23S rRNA methylas 97.8 0.001 2.3E-08 52.9 14.1 139 64-222 44-200 (205)
225 KOG3987 Uncharacterized conser 97.8 1.8E-05 3.8E-10 62.6 3.3 93 68-175 113-206 (288)
226 PRK01544 bifunctional N5-gluta 97.8 0.00029 6.2E-09 64.2 11.5 108 69-180 349-466 (506)
227 COG0421 SpeE Spermidine syntha 97.8 0.00026 5.7E-09 59.4 10.3 103 70-175 79-189 (282)
228 COG0030 KsgA Dimethyladenosine 97.8 0.00023 5E-09 58.8 9.6 77 63-150 28-106 (259)
229 KOG1663 O-methyltransferase [S 97.8 0.00029 6.3E-09 56.7 9.7 106 63-175 71-182 (237)
230 PF01564 Spermine_synth: Sperm 97.7 0.00086 1.9E-08 55.4 12.3 125 70-196 79-213 (246)
231 KOG2915 tRNA(1-methyladenosine 97.7 0.0026 5.7E-08 52.5 14.2 103 63-175 103-208 (314)
232 COG0500 SmtA SAM-dependent met 97.6 0.0017 3.7E-08 47.7 12.1 105 71-180 52-159 (257)
233 TIGR03439 methyl_EasF probable 97.6 0.0014 2.9E-08 56.1 11.6 104 70-176 79-197 (319)
234 KOG1709 Guanidinoacetate methy 97.5 0.0014 3E-08 52.4 10.4 106 63-176 99-206 (271)
235 KOG2187 tRNA uracil-5-methyltr 97.5 0.00054 1.2E-08 61.1 9.0 124 36-179 367-493 (534)
236 PF03059 NAS: Nicotianamine sy 97.5 0.00068 1.5E-08 56.6 9.1 102 70-176 123-230 (276)
237 COG4076 Predicted RNA methylas 97.5 0.00023 4.9E-09 55.6 5.4 95 70-173 35-132 (252)
238 PF13679 Methyltransf_32: Meth 97.4 0.00087 1.9E-08 50.5 7.3 74 65-145 25-105 (141)
239 TIGR01444 fkbM_fam methyltrans 97.4 0.0011 2.4E-08 49.6 7.7 57 70-129 1-59 (143)
240 PRK11760 putative 23S rRNA C24 97.4 0.02 4.2E-07 49.3 15.9 95 64-177 210-306 (357)
241 KOG2730 Methylase [General fun 97.3 0.00018 3.8E-09 57.5 3.2 99 70-171 97-197 (263)
242 PRK10742 putative methyltransf 97.2 0.0015 3.2E-08 53.6 7.5 78 69-150 90-174 (250)
243 PF13578 Methyltransf_24: Meth 97.2 6E-05 1.3E-09 53.7 -0.5 99 72-175 1-104 (106)
244 PF04816 DUF633: Family of unk 97.2 0.003 6.5E-08 50.6 9.1 118 71-200 1-122 (205)
245 KOG1269 SAM-dependent methyltr 97.2 0.00078 1.7E-08 58.6 6.2 104 64-175 109-214 (364)
246 PHA01634 hypothetical protein 97.1 0.003 6.4E-08 46.3 7.4 50 62-113 25-75 (156)
247 KOG2352 Predicted spermine/spe 97.1 0.004 8.6E-08 55.4 9.7 100 70-177 51-162 (482)
248 PF00398 RrnaAD: Ribosomal RNA 97.1 0.0036 7.8E-08 52.1 8.9 94 64-168 29-123 (262)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.1 0.0038 8.3E-08 52.6 9.1 148 32-201 68-247 (283)
250 KOG4589 Cell division protein 97.0 0.033 7E-07 43.7 12.4 122 63-201 67-208 (232)
251 COG5459 Predicted rRNA methyla 97.0 0.0038 8.2E-08 53.4 7.9 109 63-180 111-229 (484)
252 cd00315 Cyt_C5_DNA_methylase C 96.9 0.03 6.4E-07 47.0 12.7 120 70-199 2-140 (275)
253 KOG2798 Putative trehalase [Ca 96.9 0.0056 1.2E-07 51.6 7.9 107 68-175 151-295 (369)
254 PRK00050 16S rRNA m(4)C1402 me 96.9 0.0036 7.7E-08 53.0 6.8 75 64-145 18-96 (296)
255 KOG1122 tRNA and rRNA cytosine 96.8 0.044 9.6E-07 48.1 13.2 133 57-195 233-390 (460)
256 PF10237 N6-adenineMlase: Prob 96.8 0.016 3.4E-07 44.7 9.4 101 65-179 25-126 (162)
257 KOG2497 Predicted methyltransf 96.8 0.0013 2.9E-08 54.4 3.7 123 27-166 65-190 (262)
258 KOG1501 Arginine N-methyltrans 96.8 0.0043 9.4E-08 54.5 6.6 56 66-123 65-121 (636)
259 KOG3178 Hydroxyindole-O-methyl 96.7 0.01 2.2E-07 50.8 8.3 94 70-177 180-276 (342)
260 COG2384 Predicted SAM-dependen 96.4 0.18 3.9E-06 40.6 13.4 119 70-199 19-140 (226)
261 PF02005 TRM: N2,N2-dimethylgu 96.4 0.012 2.5E-07 51.7 6.9 101 69-176 51-154 (377)
262 COG3129 Predicted SAM-dependen 96.3 0.013 2.7E-07 47.5 6.3 84 65-151 76-165 (292)
263 PF06962 rRNA_methylase: Putat 96.3 0.054 1.2E-06 40.6 9.1 106 92-201 1-124 (140)
264 PF07757 AdoMet_MTase: Predict 96.1 0.01 2.2E-07 42.2 4.1 30 69-99 60-89 (112)
265 COG4262 Predicted spermidine s 96.0 0.071 1.5E-06 46.1 9.7 128 70-200 292-434 (508)
266 PF04989 CmcI: Cephalosporin h 96.0 0.048 1E-06 43.6 8.0 102 70-175 35-146 (206)
267 COG1064 AdhP Zn-dependent alco 96.0 0.063 1.4E-06 46.2 9.3 95 63-178 164-261 (339)
268 KOG1596 Fibrillarin and relate 95.8 0.18 4E-06 41.2 10.7 140 14-177 116-262 (317)
269 PRK15001 SAM-dependent 23S rib 95.8 0.84 1.8E-05 40.2 15.6 141 11-180 4-146 (378)
270 PLN02668 indole-3-acetate carb 95.7 0.095 2.1E-06 46.0 9.3 18 68-85 64-81 (386)
271 PRK09424 pntA NAD(P) transhydr 95.6 0.17 3.7E-06 46.2 11.0 101 64-177 163-286 (509)
272 KOG2671 Putative RNA methylase 95.6 0.01 2.3E-07 50.6 2.9 107 64-177 207-355 (421)
273 KOG1253 tRNA methyltransferase 95.4 0.021 4.6E-07 50.9 4.4 106 65-176 107-216 (525)
274 KOG0024 Sorbitol dehydrogenase 95.3 0.045 9.7E-07 46.5 5.9 96 64-176 168-273 (354)
275 PF04672 Methyltransf_19: S-ad 95.3 0.076 1.6E-06 44.2 6.9 109 70-180 71-194 (267)
276 KOG1331 Predicted methyltransf 95.1 0.029 6.2E-07 46.8 4.1 95 65-175 45-142 (293)
277 COG1063 Tdh Threonine dehydrog 94.9 0.1 2.3E-06 45.3 7.2 95 70-177 171-270 (350)
278 PRK09880 L-idonate 5-dehydroge 94.9 0.56 1.2E-05 40.3 11.8 96 65-177 169-267 (343)
279 PF00145 DNA_methylase: C-5 cy 94.9 0.2 4.3E-06 42.5 8.9 141 70-224 2-164 (335)
280 KOG4058 Uncharacterized conser 94.9 0.24 5.1E-06 37.5 7.9 96 70-175 75-171 (199)
281 PF03492 Methyltransf_7: SAM d 94.8 0.22 4.9E-06 43.0 9.0 32 67-99 16-65 (334)
282 KOG1227 Putative methyltransfe 94.8 0.021 4.6E-07 47.9 2.5 99 65-175 194-295 (351)
283 COG1867 TRM1 N2,N2-dimethylgua 94.7 0.23 5.1E-06 43.0 8.6 97 70-176 55-154 (380)
284 PF04445 SAM_MT: Putative SAM- 94.2 0.15 3.2E-06 41.7 6.1 77 70-149 78-161 (234)
285 KOG2198 tRNA cytosine-5-methyl 94.1 2.7 5.9E-05 36.5 13.8 134 63-201 153-325 (375)
286 PF03269 DUF268: Caenorhabditi 94.1 0.04 8.8E-07 42.1 2.5 121 70-201 4-144 (177)
287 PF03141 Methyltransf_29: Puta 93.8 0.39 8.5E-06 43.3 8.4 119 69-202 367-491 (506)
288 PF10354 DUF2431: Domain of un 93.7 0.59 1.3E-05 36.2 8.3 65 137-201 73-151 (166)
289 PF07091 FmrO: Ribosomal RNA m 93.5 0.29 6.2E-06 40.3 6.6 69 70-147 108-179 (251)
290 PF06859 Bin3: Bicoid-interact 93.5 0.027 5.9E-07 40.2 0.6 37 139-175 1-43 (110)
291 KOG2651 rRNA adenine N-6-methy 93.2 0.3 6.5E-06 42.6 6.4 35 64-101 152-187 (476)
292 COG0275 Predicted S-adenosylme 93.0 3.3 7.1E-05 35.2 12.2 45 63-109 21-68 (314)
293 COG0286 HsdM Type I restrictio 93.0 2.1 4.6E-05 39.0 12.0 104 70-175 189-325 (489)
294 PF02636 Methyltransf_28: Puta 92.9 0.26 5.6E-06 40.7 5.6 43 67-109 18-69 (252)
295 PF01555 N6_N4_Mtase: DNA meth 92.9 0.37 8E-06 38.4 6.4 35 64-101 190-224 (231)
296 COG1565 Uncharacterized conser 92.8 0.32 6.9E-06 42.1 6.0 45 68-112 78-131 (370)
297 KOG3115 Methyltransferase-like 92.5 0.49 1.1E-05 37.8 6.3 111 67-177 60-184 (249)
298 PRK11524 putative methyltransf 92.5 0.5 1.1E-05 39.8 6.9 42 63-107 206-248 (284)
299 cd08283 FDH_like_1 Glutathione 92.4 1 2.3E-05 39.4 9.2 105 63-176 182-306 (386)
300 cd00401 AdoHcyase S-adenosyl-L 92.4 0.89 1.9E-05 40.5 8.6 88 63-177 199-290 (413)
301 COG4301 Uncharacterized conser 92.1 3.2 7E-05 34.3 10.7 110 69-180 80-197 (321)
302 COG1568 Predicted methyltransf 91.9 2.5 5.4E-05 35.5 10.0 105 64-176 151-260 (354)
303 TIGR02822 adh_fam_2 zinc-bindi 91.6 5.4 0.00012 34.1 12.4 91 63-177 163-255 (329)
304 PRK01747 mnmC bifunctional tRN 91.6 3 6.4E-05 39.5 11.6 57 138-201 165-226 (662)
305 TIGR00027 mthyl_TIGR00027 meth 91.5 1.6 3.4E-05 36.4 8.7 107 70-177 84-198 (260)
306 TIGR03366 HpnZ_proposed putati 91.5 2.2 4.7E-05 35.5 9.6 95 64-176 119-218 (280)
307 TIGR01202 bchC 2-desacetyl-2-h 91.3 1.4 3E-05 37.3 8.4 85 65-176 144-231 (308)
308 PRK13699 putative methylase; P 91.2 0.96 2.1E-05 36.8 7.0 35 64-101 162-196 (227)
309 KOG2078 tRNA modification enzy 91.1 0.38 8.2E-06 42.5 4.7 60 63-126 247-307 (495)
310 COG0270 Dcm Site-specific DNA 90.7 0.87 1.9E-05 39.2 6.7 118 69-196 4-141 (328)
311 PRK11524 putative methyltransf 90.4 0.75 1.6E-05 38.7 5.9 42 137-178 25-82 (284)
312 TIGR03451 mycoS_dep_FDH mycoth 90.2 1.2 2.6E-05 38.5 7.2 98 64-176 175-276 (358)
313 KOG3924 Putative protein methy 90.2 0.61 1.3E-05 40.8 5.1 112 64-178 191-310 (419)
314 TIGR00561 pntA NAD(P) transhyd 89.5 2.4 5.2E-05 38.8 8.6 97 65-173 163-281 (511)
315 PF00107 ADH_zinc_N: Zinc-bind 89.3 1.6 3.6E-05 31.5 6.4 83 77-177 1-90 (130)
316 COG1748 LYS9 Saccharopine dehy 89.2 1.3 2.9E-05 38.9 6.6 75 70-150 3-79 (389)
317 cd08230 glucose_DH Glucose deh 89.0 4.4 9.4E-05 34.9 9.8 92 65-176 172-269 (355)
318 COG4798 Predicted methyltransf 89.0 1.2 2.6E-05 35.4 5.5 109 64-179 47-169 (238)
319 PF03721 UDPG_MGDP_dh_N: UDP-g 89.0 4.8 0.0001 31.6 9.1 114 70-192 2-136 (185)
320 cd05188 MDR Medium chain reduc 88.6 11 0.00023 30.4 11.5 94 64-177 133-233 (271)
321 cd00755 YgdL_like Family of ac 88.6 3.6 7.8E-05 33.6 8.4 35 64-100 9-45 (231)
322 TIGR00675 dcm DNA-methyltransf 88.5 0.92 2E-05 38.8 5.1 116 71-199 1-137 (315)
323 cd08254 hydroxyacyl_CoA_DH 6-h 88.5 1.7 3.7E-05 36.8 6.8 96 65-176 165-263 (338)
324 TIGR02354 thiF_fam2 thiamine b 88.4 3.2 7E-05 33.0 7.8 35 63-99 18-54 (200)
325 cd08281 liver_ADH_like1 Zinc-d 88.2 1.9 4.1E-05 37.5 7.0 98 64-176 190-290 (371)
326 cd08239 THR_DH_like L-threonin 88.2 4 8.7E-05 34.8 8.9 94 64-176 162-262 (339)
327 PRK10458 DNA cytosine methylas 88.1 3.8 8.2E-05 37.2 8.9 33 68-100 88-120 (467)
328 PRK13699 putative methylase; P 87.9 2.3 5.1E-05 34.6 6.9 59 137-198 18-92 (227)
329 PF02086 MethyltransfD12: D12 87.7 0.62 1.3E-05 38.3 3.5 46 40-101 8-53 (260)
330 TIGR00006 S-adenosyl-methyltra 87.3 2.3 5.1E-05 36.2 6.7 61 63-129 18-80 (305)
331 cd01492 Aos1_SUMO Ubiquitin ac 87.0 3.2 6.9E-05 33.0 7.0 35 64-100 19-55 (197)
332 KOG0822 Protein kinase inhibit 86.3 1.7 3.8E-05 39.6 5.6 100 69-174 369-476 (649)
333 PRK08644 thiamine biosynthesis 86.0 6.9 0.00015 31.4 8.6 35 63-99 25-61 (212)
334 COG1255 Uncharacterized protei 85.8 11 0.00024 27.3 9.1 78 70-166 16-94 (129)
335 cd01487 E1_ThiF_like E1_ThiF_l 85.7 9.2 0.0002 29.6 8.9 31 70-100 1-33 (174)
336 PF03686 UPF0146: Uncharacteri 85.3 2.2 4.8E-05 31.3 4.8 30 70-100 16-46 (127)
337 KOG1099 SAM-dependent methyltr 85.3 2.5 5.4E-05 34.5 5.5 92 70-174 44-161 (294)
338 cd08237 ribitol-5-phosphate_DH 85.3 7.9 0.00017 33.2 9.2 91 64-176 162-256 (341)
339 cd08232 idonate-5-DH L-idonate 85.0 23 0.00049 30.0 12.0 96 65-176 165-262 (339)
340 PLN02586 probable cinnamyl alc 84.9 7 0.00015 33.9 8.8 93 65-176 183-278 (360)
341 cd01483 E1_enzyme_family Super 84.5 11 0.00023 27.9 8.5 30 70-99 1-32 (143)
342 cd08285 NADP_ADH NADP(H)-depen 84.4 6.4 0.00014 33.7 8.3 99 64-176 165-266 (351)
343 PF02558 ApbA: Ketopantoate re 83.5 5 0.00011 29.8 6.4 50 137-191 65-114 (151)
344 PRK10309 galactitol-1-phosphat 83.3 5.8 0.00013 33.9 7.5 97 64-176 159-260 (347)
345 PRK12921 2-dehydropantoate 2-r 83.3 12 0.00025 31.5 9.3 98 70-178 2-104 (305)
346 PRK08265 short chain dehydroge 83.2 18 0.00039 29.5 10.2 76 64-149 4-90 (261)
347 PF01555 N6_N4_Mtase: DNA meth 83.2 3.3 7.1E-05 32.8 5.6 26 155-180 35-60 (231)
348 KOG2539 Mitochondrial/chloropl 83.1 5.3 0.00011 35.9 7.0 105 70-180 203-319 (491)
349 PRK05708 2-dehydropantoate 2-r 82.7 9.3 0.0002 32.4 8.4 100 70-180 4-108 (305)
350 PLN02740 Alcohol dehydrogenase 82.3 6.2 0.00013 34.4 7.4 36 64-101 197-234 (381)
351 PRK06249 2-dehydropantoate 2-r 82.3 8.4 0.00018 32.8 8.0 97 70-178 7-108 (313)
352 PF05206 TRM13: Methyltransfer 82.0 3.1 6.8E-05 34.6 5.1 35 64-100 17-57 (259)
353 TIGR03201 dearomat_had 6-hydro 81.9 13 0.00027 32.0 9.1 35 64-101 165-201 (349)
354 PRK06522 2-dehydropantoate 2-r 81.7 20 0.00043 30.0 10.1 97 70-178 2-102 (304)
355 TIGR02356 adenyl_thiF thiazole 81.6 2.6 5.7E-05 33.5 4.4 36 63-100 18-55 (202)
356 KOG3350 Uncharacterized conser 81.6 4.4 9.4E-05 31.7 5.3 78 90-180 98-176 (217)
357 TIGR00936 ahcY adenosylhomocys 80.7 13 0.00028 33.1 8.8 89 64-178 193-284 (406)
358 PLN02178 cinnamyl-alcohol dehy 80.5 13 0.00029 32.5 8.8 94 65-176 178-273 (375)
359 PLN02827 Alcohol dehydrogenase 80.4 6.8 0.00015 34.2 7.0 99 64-176 192-295 (378)
360 PRK12475 thiamine/molybdopteri 80.3 7 0.00015 33.8 6.9 35 64-100 22-58 (338)
361 PRK06124 gluconate 5-dehydroge 79.5 31 0.00067 27.8 11.6 80 63-149 8-98 (256)
362 PRK15116 sulfur acceptor prote 78.3 9.7 0.00021 31.9 6.9 36 63-100 27-64 (268)
363 cd01489 Uba2_SUMO Ubiquitin ac 78.0 11 0.00025 32.2 7.4 31 70-100 1-33 (312)
364 TIGR00518 alaDH alanine dehydr 78.0 7.3 0.00016 34.2 6.4 33 65-100 166-200 (370)
365 PF07669 Eco57I: Eco57I restri 78.0 21 0.00046 25.1 8.0 82 139-222 2-103 (106)
366 COG1179 Dinucleotide-utilizing 78.0 8.2 0.00018 31.8 6.1 36 63-100 27-64 (263)
367 PRK07688 thiamine/molybdopteri 77.7 8.6 0.00019 33.3 6.7 35 64-100 22-58 (339)
368 PLN02494 adenosylhomocysteinas 77.1 12 0.00025 34.1 7.4 90 63-177 251-342 (477)
369 cd01485 E1-1_like Ubiquitin ac 76.9 4 8.7E-05 32.4 4.1 34 65-100 18-53 (198)
370 cd01488 Uba3_RUB Ubiquitin act 76.9 17 0.00037 30.8 8.0 30 70-99 1-32 (291)
371 cd05278 FDH_like Formaldehyde 76.7 22 0.00047 30.2 8.9 99 65-176 167-267 (347)
372 PTZ00357 methyltransferase; Pr 76.7 16 0.00034 34.9 8.2 101 69-171 702-830 (1072)
373 PRK06701 short chain dehydroge 76.6 43 0.00093 27.9 10.8 79 63-148 43-133 (290)
374 PRK05786 fabG 3-ketoacyl-(acyl 76.4 36 0.00079 26.9 10.6 103 65-176 4-135 (238)
375 COG1893 ApbA Ketopantoate redu 76.3 21 0.00046 30.4 8.6 99 70-180 2-105 (307)
376 PRK05597 molybdopterin biosynt 76.2 5.1 0.00011 34.9 4.8 36 63-100 25-62 (355)
377 cd08231 MDR_TM0436_like Hypoth 76.1 30 0.00065 29.7 9.7 99 65-176 177-280 (361)
378 PRK07109 short chain dehydroge 76.0 44 0.00094 28.6 10.6 79 64-149 6-95 (334)
379 PLN03154 putative allyl alcoho 76.0 16 0.00034 31.5 7.9 97 64-176 157-258 (348)
380 TIGR02825 B4_12hDH leukotriene 75.6 38 0.00083 28.5 10.1 96 64-176 137-237 (325)
381 PRK08267 short chain dehydroge 75.5 39 0.00084 27.3 9.8 73 70-149 3-87 (260)
382 COG3315 O-Methyltransferase in 75.4 20 0.00044 30.4 8.1 107 70-177 95-210 (297)
383 PRK08223 hypothetical protein; 75.3 15 0.00032 31.1 7.2 36 63-100 24-61 (287)
384 TIGR02819 fdhA_non_GSH formald 74.6 32 0.00069 30.3 9.6 100 64-177 184-300 (393)
385 PRK07411 hypothetical protein; 74.5 10 0.00022 33.5 6.4 36 63-100 35-72 (390)
386 PRK12548 shikimate 5-dehydroge 74.4 31 0.00066 29.1 9.0 79 65-150 125-210 (289)
387 COG3510 CmcI Cephalosporin hyd 74.2 36 0.00077 27.2 8.5 98 70-177 72-181 (237)
388 COG0677 WecC UDP-N-acetyl-D-ma 73.9 32 0.0007 30.6 9.0 114 70-190 11-141 (436)
389 PRK12481 2-deoxy-D-gluconate 3 73.8 46 0.001 26.9 10.2 79 63-149 5-93 (251)
390 COG0686 Ald Alanine dehydrogen 73.8 12 0.00025 32.2 6.1 96 70-176 170-268 (371)
391 PLN02514 cinnamyl-alcohol dehy 73.6 31 0.00068 29.7 9.2 93 65-176 180-275 (357)
392 cd08233 butanediol_DH_like (2R 73.6 14 0.00029 31.7 6.9 98 65-177 172-273 (351)
393 TIGR02818 adh_III_F_hyde S-(hy 73.6 16 0.00034 31.7 7.3 97 64-176 184-287 (368)
394 cd08240 6_hydroxyhexanoate_dh_ 73.2 25 0.00053 30.0 8.4 96 65-175 175-273 (350)
395 KOG1201 Hydroxysteroid 17-beta 73.2 58 0.0012 27.7 10.8 79 63-149 35-124 (300)
396 KOG2912 Predicted DNA methylas 72.5 4.7 0.0001 34.6 3.5 76 72-152 107-191 (419)
397 cd01491 Ube1_repeat1 Ubiquitin 72.4 8.9 0.00019 32.4 5.2 35 64-100 17-53 (286)
398 PRK05867 short chain dehydroge 72.3 27 0.00059 28.2 8.1 80 63-149 6-96 (253)
399 cd01484 E1-2_like Ubiquitin ac 72.1 20 0.00044 29.3 7.1 31 70-100 1-33 (234)
400 PRK08339 short chain dehydroge 71.8 54 0.0012 26.8 10.3 80 64-149 6-95 (263)
401 PRK07877 hypothetical protein; 71.6 17 0.00038 34.9 7.5 35 64-100 105-141 (722)
402 PRK11064 wecC UDP-N-acetyl-D-m 71.6 74 0.0016 28.3 11.6 110 70-191 5-133 (415)
403 PF11599 AviRa: RRNA methyltra 71.4 5.4 0.00012 32.3 3.4 114 66-180 50-218 (246)
404 cd08261 Zn_ADH7 Alcohol dehydr 71.4 36 0.00078 28.8 9.0 98 64-176 158-258 (337)
405 PF02737 3HCDH_N: 3-hydroxyacy 71.3 10 0.00022 29.6 5.0 96 71-176 2-114 (180)
406 PRK08324 short chain dehydroge 71.3 36 0.00078 32.4 9.7 104 65-176 421-557 (681)
407 PRK05854 short chain dehydroge 71.2 38 0.00082 28.6 9.0 82 63-149 11-103 (313)
408 cd08294 leukotriene_B4_DH_like 70.6 21 0.00045 30.0 7.3 96 64-176 142-241 (329)
409 PRK14852 hypothetical protein; 70.5 8.1 0.00017 38.2 5.1 35 64-100 330-366 (989)
410 PRK09242 tropinone reductase; 70.4 55 0.0012 26.4 11.4 81 64-149 7-98 (257)
411 PF06460 NSP13: Coronavirus NS 70.3 62 0.0014 27.1 9.4 109 69-200 63-190 (299)
412 PRK05476 S-adenosyl-L-homocyst 70.3 30 0.00065 31.0 8.3 90 64-179 210-302 (425)
413 cd08277 liver_alcohol_DH_like 70.3 19 0.00042 31.1 7.1 99 64-176 183-286 (365)
414 PRK05876 short chain dehydroge 70.2 60 0.0013 26.7 9.9 79 64-149 4-93 (275)
415 PF03446 NAD_binding_2: NAD bi 69.9 22 0.00049 26.9 6.6 111 70-200 3-118 (163)
416 PF11899 DUF3419: Protein of u 69.7 11 0.00024 33.2 5.4 50 32-101 19-68 (380)
417 PF00106 adh_short: short chai 69.7 37 0.00079 25.2 7.8 78 70-151 2-92 (167)
418 PRK06139 short chain dehydroge 69.6 20 0.00043 30.8 6.9 79 64-149 5-94 (330)
419 COG0240 GpsA Glycerol-3-phosph 69.5 33 0.00071 29.7 8.0 107 70-183 3-112 (329)
420 KOG2013 SMT3/SUMO-activating c 69.3 1.9 4E-05 38.9 0.5 34 65-100 11-46 (603)
421 PRK05872 short chain dehydroge 69.2 66 0.0014 26.8 10.5 79 63-149 6-95 (296)
422 cd08279 Zn_ADH_class_III Class 69.1 66 0.0014 27.6 10.2 100 64-176 181-282 (363)
423 cd08265 Zn_ADH3 Alcohol dehydr 69.0 29 0.00062 30.3 8.0 99 65-176 203-307 (384)
424 PF05430 Methyltransf_30: S-ad 68.8 11 0.00025 27.5 4.5 59 137-202 48-111 (124)
425 cd08234 threonine_DH_like L-th 68.7 43 0.00092 28.2 8.8 94 64-176 158-257 (334)
426 cd08278 benzyl_alcohol_DH Benz 68.4 17 0.00037 31.4 6.4 94 65-176 186-285 (365)
427 PRK08229 2-dehydropantoate 2-r 68.3 45 0.00097 28.5 8.9 96 70-176 4-107 (341)
428 PF11312 DUF3115: Protein of u 68.3 12 0.00026 32.0 5.1 111 69-179 88-245 (315)
429 cd05285 sorbitol_DH Sorbitol d 68.3 52 0.0011 27.9 9.3 98 64-176 161-265 (343)
430 PRK07806 short chain dehydroge 68.1 60 0.0013 25.9 9.9 104 64-175 4-133 (248)
431 KOG0022 Alcohol dehydrogenase, 67.9 11 0.00023 32.5 4.6 35 64-100 191-227 (375)
432 cd08300 alcohol_DH_class_III c 67.2 27 0.00058 30.2 7.4 98 64-176 185-288 (368)
433 PRK06181 short chain dehydroge 67.0 53 0.0011 26.5 8.8 74 70-149 3-88 (263)
434 COG4627 Uncharacterized protei 66.9 1.3 2.8E-05 33.9 -0.8 40 136-175 44-85 (185)
435 PTZ00245 ubiquitin activating 66.7 77 0.0017 26.6 10.5 93 64-168 24-133 (287)
436 PRK09489 rsmC 16S ribosomal RN 65.7 83 0.0018 27.3 10.0 42 138-180 75-116 (342)
437 COG1062 AdhC Zn-dependent alco 65.3 13 0.00029 32.2 4.8 36 64-101 184-221 (366)
438 KOG0725 Reductases with broad 64.7 82 0.0018 26.3 11.7 84 63-150 5-100 (270)
439 cd08293 PTGR2 Prostaglandin re 64.7 29 0.00062 29.4 7.0 94 70-176 157-254 (345)
440 KOG1562 Spermidine synthase [A 64.7 91 0.002 26.7 10.4 104 70-176 124-236 (337)
441 PRK05650 short chain dehydroge 63.7 73 0.0016 25.9 9.1 75 70-149 2-87 (270)
442 PF11899 DUF3419: Protein of u 63.6 11 0.00023 33.3 4.1 60 118-178 275-336 (380)
443 PF00899 ThiF: ThiF family; I 63.5 8.7 0.00019 28.2 3.1 30 70-99 4-35 (135)
444 cd08238 sorbose_phosphate_red 63.4 1E+02 0.0022 27.1 10.5 36 64-101 174-214 (410)
445 PRK15057 UDP-glucose 6-dehydro 63.3 37 0.00079 30.0 7.5 52 139-192 73-132 (388)
446 cd08263 Zn_ADH10 Alcohol dehyd 63.2 33 0.00072 29.5 7.2 99 65-176 187-287 (367)
447 PF01795 Methyltransf_5: MraW 63.0 21 0.00045 30.6 5.6 77 63-145 18-99 (310)
448 PRK08762 molybdopterin biosynt 63.0 23 0.0005 31.0 6.2 35 63-99 132-168 (376)
449 PRK07533 enoyl-(acyl carrier p 62.9 82 0.0018 25.6 10.6 79 63-149 7-98 (258)
450 cd05213 NAD_bind_Glutamyl_tRNA 62.8 96 0.0021 26.4 10.1 35 64-100 176-212 (311)
451 PF01210 NAD_Gly3P_dh_N: NAD-d 62.8 34 0.00073 25.8 6.4 100 71-177 2-104 (157)
452 KOG2018 Predicted dinucleotide 62.6 19 0.00042 30.9 5.2 38 62-101 70-109 (430)
453 PLN03209 translocon at the inn 62.5 1.2E+02 0.0026 28.4 10.8 81 65-149 79-169 (576)
454 cd08296 CAD_like Cinnamyl alco 62.5 95 0.0021 26.2 10.7 95 64-176 162-259 (333)
455 PRK08293 3-hydroxybutyryl-CoA 62.3 13 0.00027 31.2 4.3 95 70-173 5-117 (287)
456 PRK10083 putative oxidoreducta 62.2 95 0.0021 26.1 10.3 98 64-176 159-259 (339)
457 TIGR00692 tdh L-threonine 3-de 62.2 40 0.00087 28.6 7.4 33 138-176 229-261 (340)
458 PRK09260 3-hydroxybutyryl-CoA 62.2 54 0.0012 27.4 8.1 102 70-180 3-121 (288)
459 COG0604 Qor NADPH:quinone redu 61.5 96 0.0021 26.6 9.6 98 64-177 141-242 (326)
460 PF13561 adh_short_C2: Enoyl-( 61.1 31 0.00066 27.7 6.2 90 81-176 12-133 (241)
461 PRK14851 hypothetical protein; 61.0 45 0.00097 31.9 8.0 36 63-100 40-77 (679)
462 PRK08589 short chain dehydroge 60.8 56 0.0012 26.8 7.9 79 64-149 4-92 (272)
463 cd08286 FDH_like_ADH2 formalde 60.8 45 0.00098 28.3 7.5 99 65-176 166-266 (345)
464 PRK07530 3-hydroxybutyryl-CoA 60.8 25 0.00053 29.5 5.8 94 70-173 6-116 (292)
465 KOG4169 15-hydroxyprostaglandi 60.7 38 0.00083 27.8 6.4 90 65-159 4-103 (261)
466 PF03435 Saccharop_dh: Sacchar 60.6 41 0.00088 29.4 7.3 71 71-149 1-77 (386)
467 COG2961 ComJ Protein involved 60.5 99 0.0021 25.8 11.6 140 32-193 66-212 (279)
468 cd05279 Zn_ADH1 Liver alcohol 60.5 43 0.00093 28.9 7.4 98 64-176 182-285 (365)
469 PRK07819 3-hydroxybutyryl-CoA 60.5 31 0.00067 29.0 6.3 99 70-173 7-118 (286)
470 cd08291 ETR_like_1 2-enoyl thi 60.4 39 0.00084 28.5 7.0 88 70-176 145-242 (324)
471 TIGR01381 E1_like_apg7 E1-like 60.4 9.5 0.00021 36.0 3.3 33 65-99 337-371 (664)
472 PRK08085 gluconate 5-dehydroge 60.2 88 0.0019 25.1 11.2 80 63-149 6-96 (254)
473 PF05711 TylF: Macrocin-O-meth 60.1 30 0.00065 28.6 5.9 107 70-179 77-215 (248)
474 cd05281 TDH Threonine dehydrog 60.1 58 0.0013 27.6 8.1 98 65-176 163-262 (341)
475 PRK07326 short chain dehydroge 60.1 84 0.0018 24.8 9.9 76 65-149 5-92 (237)
476 cd08242 MDR_like Medium chain 59.9 1E+02 0.0022 25.7 9.6 87 65-175 155-244 (319)
477 KOG0023 Alcohol dehydrogenase, 59.4 32 0.0007 29.7 6.0 33 65-100 181-215 (360)
478 cd08236 sugar_DH NAD(P)-depend 59.3 95 0.002 26.2 9.3 94 64-176 158-258 (343)
479 PLN02702 L-idonate 5-dehydroge 59.0 36 0.00077 29.3 6.6 99 64-176 180-285 (364)
480 PRK07062 short chain dehydroge 58.8 90 0.0019 25.2 8.7 81 64-149 6-97 (265)
481 cd05565 PTS_IIB_lactose PTS_II 58.6 40 0.00087 23.6 5.6 34 138-177 46-79 (99)
482 cd01493 APPBP1_RUB Ubiquitin a 57.5 84 0.0018 28.2 8.7 34 65-100 19-54 (425)
483 PRK05396 tdh L-threonine 3-deh 57.5 52 0.0011 27.9 7.3 99 65-176 163-263 (341)
484 PRK08328 hypothetical protein; 57.5 11 0.00024 30.6 3.0 35 64-100 25-61 (231)
485 PRK07097 gluconate 5-dehydroge 57.4 1E+02 0.0022 25.0 11.3 80 63-149 7-97 (265)
486 cd08245 CAD Cinnamyl alcohol d 57.2 1.2E+02 0.0025 25.5 11.5 93 64-176 161-256 (330)
487 cd08295 double_bond_reductase_ 57.2 69 0.0015 27.1 8.1 97 64-176 150-251 (338)
488 PRK07523 gluconate 5-dehydroge 57.0 1E+02 0.0022 24.7 10.9 79 63-149 7-97 (255)
489 PRK08862 short chain dehydroge 57.0 52 0.0011 26.3 6.9 76 65-147 4-91 (227)
490 KOG2918 Carboxymethyl transfer 56.1 24 0.00052 30.2 4.7 57 27-101 65-124 (335)
491 PRK05866 short chain dehydroge 55.9 66 0.0014 26.9 7.6 79 64-149 38-127 (293)
492 cd00757 ThiF_MoeB_HesA_family 55.3 15 0.00033 29.7 3.5 35 64-100 19-55 (228)
493 PRK08594 enoyl-(acyl carrier p 55.0 1.1E+02 0.0025 24.7 9.9 79 64-148 5-96 (257)
494 cd08255 2-desacetyl-2-hydroxye 54.7 1.2E+02 0.0025 24.7 11.8 93 64-176 96-190 (277)
495 KOG1098 Putative SAM-dependent 54.5 21 0.00046 33.5 4.5 34 65-100 44-79 (780)
496 COG0863 DNA modification methy 54.4 53 0.0011 27.3 6.8 36 63-101 220-255 (302)
497 KOG2337 Ubiquitin activating E 54.3 51 0.0011 30.4 6.7 122 69-193 341-475 (669)
498 PRK06128 oxidoreductase; Provi 54.0 1.3E+02 0.0028 25.1 10.5 79 64-149 53-144 (300)
499 PRK07035 short chain dehydroge 54.0 67 0.0015 25.7 7.2 79 63-148 5-94 (252)
500 PRK06935 2-deoxy-D-gluconate 3 53.9 52 0.0011 26.6 6.5 80 63-149 12-101 (258)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.94 E-value=1.2e-26 Score=181.43 Aligned_cols=169 Identities=33% Similarity=0.542 Sum_probs=101.7
Q ss_pred cCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCc
Q 026858 14 RDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLAD 92 (232)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~ 92 (232)
++.+++|+++.+ .++|.++|+++..|++|+....... .....+.++ +|||||||+|+.|+.+++. +..+
T Consensus 2 ~~~~l~i~e~~~-~~~G~~vW~aa~~La~~l~~~~~~~-------~~~~~~~~~--~VLELGaG~Gl~gi~~a~~~~~~~ 71 (173)
T PF10294_consen 2 DNKTLQIEEDWG-DGTGGKVWPAALVLARYLLSHSESE-------FNPELFRGK--RVLELGAGTGLPGIAAAKLFGAAR 71 (173)
T ss_dssp ----------------------HHHHHHHHHHH--------------GGGTTTS--EEEETT-TTSHHHHHHHHT-T-SE
T ss_pred cccccccccccc-cCCcEEEechHHHHHHHHHHhcccc-------cchhhcCCc--eEEEECCccchhHHHHHhccCCce
Confidence 456789999988 5999999999999999999853100 000156777 9999999999999999998 5569
Q ss_pred EEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcE
Q 026858 93 IVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGV 171 (232)
Q Consensus 93 v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~ 171 (232)
|+++|.++.+..++.|+..|......++.+..++|+....... ...+||+|+++|++|..+..+.+++.+.++++++|.
T Consensus 72 Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 72 VVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp EEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred EEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence 9999999988899999999875456778999999998542222 235799999999999999999999999999999999
Q ss_pred EEEEEeecChhHHHHHHHHHhc
Q 026858 172 VLLGYQLRSPEAHKLFWEMCAE 193 (232)
Q Consensus 172 l~i~~~~r~~~~~~~~~~~~~~ 193 (232)
++++++.|. .....|++.+++
T Consensus 152 vl~~~~~R~-~~~~~F~~~~~k 172 (173)
T PF10294_consen 152 VLLAYKRRR-KSEQEFFDRLKK 172 (173)
T ss_dssp EEEEEE-S--TGGCHHHHHH--
T ss_pred EEEEeCEec-HHHHHHHHHhhh
Confidence 999998886 456778887753
No 2
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.79 E-value=2.5e-18 Score=144.13 Aligned_cols=162 Identities=23% Similarity=0.358 Sum_probs=122.0
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
|-++...++.+.|.-+|| +..|+-.++++....+++.+... +++ +|||+|||||.+++.+++
T Consensus 120 w~~~~~~~~~~~I~idPg-~AFGTG~H~TT~lcl~~l~~~~~---------------~g~--~vLDvG~GSGILaiaA~k 181 (295)
T PF06325_consen 120 WEEYPEPPDEIVIEIDPG-MAFGTGHHPTTRLCLELLEKYVK---------------PGK--RVLDVGCGSGILAIAAAK 181 (295)
T ss_dssp T----SSTTSEEEEESTT-SSS-SSHCHHHHHHHHHHHHHSS---------------TTS--EEEEES-TTSHHHHHHHH
T ss_pred CcccCCCCCcEEEEECCC-CcccCCCCHHHHHHHHHHHHhcc---------------CCC--EEEEeCCcHHHHHHHHHH
Confidence 777877788999999999 77777778999999999998855 778 999999999999999999
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhh
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALV 166 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l 166 (232)
.|+++|+++|+++ ++..++.|+..|+ +..++... .... ...++||+|+++= ....+..++..+.+++
T Consensus 182 lGA~~v~a~DiDp~Av~~a~~N~~~N~--~~~~~~v~-----~~~~--~~~~~~dlvvANI---~~~vL~~l~~~~~~~l 249 (295)
T PF06325_consen 182 LGAKKVVAIDIDPLAVEAARENAELNG--VEDRIEVS-----LSED--LVEGKFDLVVANI---LADVLLELAPDIASLL 249 (295)
T ss_dssp TTBSEEEEEESSCHHHHHHHHHHHHTT---TTCEEES-----CTSC--TCCS-EEEEEEES----HHHHHHHHHHCHHHE
T ss_pred cCCCeEEEecCCHHHHHHHHHHHHHcC--CCeeEEEE-----Eecc--cccccCCEEEECC---CHHHHHHHHHHHHHhh
Confidence 9999999999999 5889999999998 33444332 1111 1237899999853 2245667888899999
Q ss_pred CCCcEEEEEEeecChhHHHHHHHHHhcCceEEEec
Q 026858 167 ADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 167 ~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~ 201 (232)
+|||.++++..... ....+.+.++.+|.+....
T Consensus 250 ~~~G~lIlSGIl~~--~~~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 250 KPGGYLILSGILEE--QEDEVIEAYKQGFELVEER 282 (295)
T ss_dssp EEEEEEEEEEEEGG--GHHHHHHHHHTTEEEEEEE
T ss_pred CCCCEEEEccccHH--HHHHHHHHHHCCCEEEEEE
Confidence 99999999887664 2456666666688876654
No 3
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=6.7e-18 Score=140.51 Aligned_cols=164 Identities=23% Similarity=0.316 Sum_probs=128.6
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
|.++.-....+.|+-+|| +..|+-.+|.+....+++.+... +++ +|||+|||||.+++.+++
T Consensus 121 w~~~~~~~~~~~i~lDPG-lAFGTG~HpTT~lcL~~Le~~~~---------------~g~--~vlDvGcGSGILaIAa~k 182 (300)
T COG2264 121 WREYPEPSDELNIELDPG-LAFGTGTHPTTSLCLEALEKLLK---------------KGK--TVLDVGCGSGILAIAAAK 182 (300)
T ss_pred CccCCCCCCceEEEEccc-cccCCCCChhHHHHHHHHHHhhc---------------CCC--EEEEecCChhHHHHHHHH
Confidence 777766668999999999 67777778999999999998754 778 999999999999999999
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccEEEEcccCCCcccHHHHHHHHHHh
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDLVIAADVVYIEESAAQLVRAMEAL 165 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~ 165 (232)
.|+.+++++|+++ +++.++.|+..|+... .+.....+. . ... .++||+|+++= + ...+..+...+.++
T Consensus 183 LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~--~~~~~~~~~---~--~~~~~~~~DvIVANI-L--A~vl~~La~~~~~~ 252 (300)
T COG2264 183 LGAKKVVGVDIDPQAVEAARENARLNGVEL--LVQAKGFLL---L--EVPENGPFDVIVANI-L--AEVLVELAPDIKRL 252 (300)
T ss_pred cCCceEEEecCCHHHHHHHHHHHHHcCCch--hhhcccccc---h--hhcccCcccEEEehh-h--HHHHHHHHHHHHHH
Confidence 9998999999999 6999999999998432 111122111 1 112 25899999853 2 24667888999999
Q ss_pred hCCCcEEEEEEeecChhHHHHHHHHH-hcCceEEEec
Q 026858 166 VADDGVVLLGYQLRSPEAHKLFWEMC-AEVFLIEKVP 201 (232)
Q Consensus 166 l~pgG~l~i~~~~r~~~~~~~~~~~~-~~~f~~~~~~ 201 (232)
++|||+++++...... .+.+.+.+ +.+|.+.+..
T Consensus 253 lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 253 LKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred cCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEEE
Confidence 9999999999866652 56667766 4599887765
No 4
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.75 E-value=2e-16 Score=123.50 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCC-cEEE
Q 026858 17 LLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLA-DIVL 95 (232)
Q Consensus 17 ~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~-~v~~ 95 (232)
++++++.+|.++.+.. =.++..|++++..... + +|||+|||+|.+++.+++.+.. ++++
T Consensus 1 ~~~~~~~~gvFs~~~~-d~~t~lL~~~l~~~~~-----------------~--~vLDlG~G~G~i~~~la~~~~~~~v~~ 60 (170)
T PF05175_consen 1 ELEFITHPGVFSPPRL-DAGTRLLLDNLPKHKG-----------------G--RVLDLGCGSGVISLALAKRGPDAKVTA 60 (170)
T ss_dssp EEEEEEETTSTTTTSH-HHHHHHHHHHHHHHTT-----------------C--EEEEETSTTSHHHHHHHHTSTCEEEEE
T ss_pred CEEEEECCCeeCCCCC-CHHHHHHHHHHhhccC-----------------C--eEEEecCChHHHHHHHHHhCCCCEEEE
Confidence 4789999998875544 3457788888877533 5 8999999999999999988553 6999
Q ss_pred Ecchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc-----cHHHHHHHHHHhhCCC
Q 026858 96 TDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE-----SAAQLVRAMEALVADD 169 (232)
Q Consensus 96 ~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~pg 169 (232)
+|+++ ++..++.|+..|... . +.+...|+-... ..++||+|+++++++... ....+++...+.|+||
T Consensus 61 vDi~~~a~~~a~~n~~~n~~~--~-v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 61 VDINPDALELAKRNAERNGLE--N-VEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp EESBHHHHHHHHHHHHHTTCT--T-EEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred EcCCHHHHHHHHHHHHhcCcc--c-cccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 99999 688889999988732 2 677776664433 246899999999987544 3788999999999999
Q ss_pred cEEEEEEeec
Q 026858 170 GVVLLGYQLR 179 (232)
Q Consensus 170 G~l~i~~~~r 179 (232)
|.++++....
T Consensus 134 G~l~lv~~~~ 143 (170)
T PF05175_consen 134 GRLFLVINSH 143 (170)
T ss_dssp EEEEEEEETT
T ss_pred CEEEEEeecC
Confidence 9998877544
No 5
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.74 E-value=1.8e-16 Score=137.27 Aligned_cols=178 Identities=12% Similarity=0.117 Sum_probs=123.9
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.+++++.|..++|...+|.++.+.-. .++..|.+++... ... +|||||||+|.+++.+++
T Consensus 189 ~~~~~~~~~~~~~~~~~gVFs~~~LD-~GtrllL~~lp~~-----------------~~~--~VLDLGCGtGvi~i~la~ 248 (378)
T PRK15001 189 TVSWKLEGTDWTIHNHANVFSRTGLD-IGARFFMQHLPEN-----------------LEG--EIVDLGCGNGVIGLTLLD 248 (378)
T ss_pred eeEEEEcCceEEEEecCCccCCCCcC-hHHHHHHHhCCcc-----------------cCC--eEEEEeccccHHHHHHHH
Confidence 67889999999999999999976544 5566666665322 235 899999999999999987
Q ss_pred h-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc-----ccHHHHHH
Q 026858 88 L-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE-----ESAAQLVR 160 (232)
Q Consensus 88 ~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~l~ 160 (232)
. +..+|+++|.|+ ++..++.|.+.|......++.+...|..... ..++||+|+++++++.. .....++.
T Consensus 249 ~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~----~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~ 324 (378)
T PRK15001 249 KNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV----EPFRFNAVLCNPPFHQQHALTDNVAWEMFH 324 (378)
T ss_pred hCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC----CCCCEEEEEECcCcccCccCCHHHHHHHHH
Confidence 7 334999999998 5778888888775321123455444432211 13479999999888643 24567889
Q ss_pred HHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCc-eEEEecCCCCCCCCCCCceEEEEEEec
Q 026858 161 AMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVF-LIEKVPHEDLHPDYGYEETDVYILRKK 222 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 222 (232)
.+.++|+|||.++++. +|+.. +...+++.| .++.+. ..+++.|+...+.
T Consensus 325 ~a~~~LkpGG~L~iV~-nr~l~----y~~~L~~~fg~~~~va--------~~~kf~vl~a~k~ 374 (378)
T PRK15001 325 HARRCLKINGELYIVA-NRHLD----YFHKLKKIFGNCTTIA--------TNNKFVVLKAVKL 374 (378)
T ss_pred HHHHhcccCCEEEEEE-ecCcC----HHHHHHHHcCCceEEc--------cCCCEEEEEEEeC
Confidence 9999999999999996 44422 223333333 344443 4667777776653
No 6
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.9e-16 Score=131.19 Aligned_cols=173 Identities=15% Similarity=0.170 Sum_probs=122.6
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
+....+.+..+++...||+++.+.-.-.+ .+|.+.+.. ..+. +|||+|||.|.+|+.+++
T Consensus 119 ~~~~~~~~~~~~~~t~pGVFS~~~lD~GS-~lLl~~l~~-----------------~~~~--~vlDlGCG~Gvlg~~la~ 178 (300)
T COG2813 119 EWKVYLLGHELTFKTLPGVFSRDKLDKGS-RLLLETLPP-----------------DLGG--KVLDLGCGYGVLGLVLAK 178 (300)
T ss_pred hhhhhhccCceEEEeCCCCCcCCCcChHH-HHHHHhCCc-----------------cCCC--cEEEeCCCccHHHHHHHH
Confidence 44444559999999999999998877664 444444332 2345 899999999999999998
Q ss_pred h-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCccc-HH----HHHH
Q 026858 88 L-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEES-AA----QLVR 160 (232)
Q Consensus 88 ~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~-~~----~~l~ 160 (232)
. +..+++++|.|. +++.++.|+..|..... .+..-+. .+...++||.||++++++.... .. .++.
T Consensus 179 ~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~---~v~~s~~-----~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~ 250 (300)
T COG2813 179 KSPQAKLTLVDVNARAVESARKNLAANGVENT---EVWASNL-----YEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIA 250 (300)
T ss_pred hCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc---EEEEecc-----cccccccccEEEeCCCccCCcchhHHHHHHHHH
Confidence 7 445999999998 68999999999874421 1222211 1112348999999999984433 33 6889
Q ss_pred HHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCc-eEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 161 AMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVF-LIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
...+.|++||.++++.. +... +...+++-| +++.+. ....+.|+..++
T Consensus 251 ~A~~~L~~gGeL~iVan-~~l~----y~~~L~~~Fg~v~~la--------~~~gf~Vl~a~k 299 (300)
T COG2813 251 AAARHLKPGGELWIVAN-RHLP----YEKKLKELFGNVEVLA--------KNGGFKVLRAKK 299 (300)
T ss_pred HHHHhhccCCEEEEEEc-CCCC----hHHHHHHhcCCEEEEE--------eCCCEEEEEEec
Confidence 99999999999999986 4422 444455555 367765 456666666544
No 7
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.72 E-value=6.8e-16 Score=125.43 Aligned_cols=164 Identities=21% Similarity=0.235 Sum_probs=128.8
Q ss_pred EEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh
Q 026858 9 IELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL 88 (232)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~ 88 (232)
++...-++.+.|.|.++.+..|.- +.+|+.|.... ... +|||||||+|.+++.+|+.
T Consensus 9 ~~~~~~~~~~~I~q~~~~~~~~~D----aiLL~~~~~~~-----------------~~~--~IlDlGaG~G~l~L~la~r 65 (248)
T COG4123 9 IDNLFTFKQFFIIQDRCGFRYGTD----AILLAAFAPVP-----------------KKG--RILDLGAGNGALGLLLAQR 65 (248)
T ss_pred hcccccccceEEEeCCCccccccH----HHHHHhhcccc-----------------cCC--eEEEecCCcCHHHHHHhcc
Confidence 444446788999999987777765 89999998643 245 9999999999999999987
Q ss_pred -CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc-------------
Q 026858 89 -GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE------------- 153 (232)
Q Consensus 89 -~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~------------- 153 (232)
...+++++|+++ +...+++|.+.|. +..++++...|+.+...... ..+||+|+|++++|...
T Consensus 66 ~~~a~I~~VEiq~~~a~~A~~nv~ln~--l~~ri~v~~~Di~~~~~~~~-~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar 142 (248)
T COG4123 66 TEKAKIVGVEIQEEAAEMAQRNVALNP--LEERIQVIEADIKEFLKALV-FASFDLIICNPPYFKQGSRLNENPLRAIAR 142 (248)
T ss_pred CCCCcEEEEEeCHHHHHHHHHHHHhCc--chhceeEehhhHHHhhhccc-ccccCEEEeCCCCCCCccccCcChhhhhhh
Confidence 434999999999 5678888998877 67788999998877654222 23699999999987332
Q ss_pred -----cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEec
Q 026858 154 -----SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 154 -----~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~ 201 (232)
+++.+++...++||+||.+.++... +....+.+.+.. +|...++.
T Consensus 143 ~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 143 HEITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred hhhcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCCCceEEE
Confidence 5899999999999999999999742 445667777776 78776664
No 8
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.1e-17 Score=125.26 Aligned_cols=159 Identities=23% Similarity=0.312 Sum_probs=122.9
Q ss_pred CCCccc-eeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchh-H
Q 026858 26 SMHVGT-SVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISP-V 101 (232)
Q Consensus 26 ~~~~g~-~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~-~ 101 (232)
..+||. ++||++.+|+.++.+... ++.+. +|||+|.|- |+.++.+|.. ....|..+|.++ .
T Consensus 2 fdntgnvciwpseeala~~~l~~~n-------------~~rg~--~ilelgggft~laglmia~~a~~~~v~ltdgne~s 66 (201)
T KOG3201|consen 2 FDNTGNVCIWPSEEALAWTILRDPN-------------KIRGR--RILELGGGFTGLAGLMIACKAPDSSVWLTDGNEES 66 (201)
T ss_pred cCCCCcEEecccHHHHHHHHHhchh-------------HHhHH--HHHHhcCchhhhhhhheeeecCCceEEEecCCHHH
Confidence 456777 799999999999998877 78889 999999995 8889988876 445999999998 5
Q ss_pred HHHHHHHHHhcCCCCCCceEEEEeecCCCccc-ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 102 MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 102 ~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+++.++-+-.|....-. ....+.|...... ......||+|+++|+++..+..+.++++++.+|+|.|+.++..+.|.
T Consensus 67 vrnv~ki~~~n~~s~~t--sc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 67 VRNVEKIRNSNMASSLT--SCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred HHHHHHHHhcccccccc--eehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 77777766555321112 2223443332221 12234799999999999999999999999999999999998888776
Q ss_pred hhHHHHHHHHHhc-CceEEEecC
Q 026858 181 PEAHKLFWEMCAE-VFLIEKVPH 202 (232)
Q Consensus 181 ~~~~~~~~~~~~~-~f~~~~~~~ 202 (232)
.+.++|.+.... +|.+..-++
T Consensus 145 -~sL~kF~de~~~~gf~v~l~en 166 (201)
T KOG3201|consen 145 -QSLQKFLDEVGTVGFTVCLEEN 166 (201)
T ss_pred -chHHHHHHHHHhceeEEEeccc
Confidence 778999999886 887765544
No 9
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.70 E-value=6.6e-16 Score=130.23 Aligned_cols=164 Identities=21% Similarity=0.375 Sum_probs=118.3
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
|-++......+.|.-+|| +..|+-.++.+....+++..... +++ +|||+|||+|.+++.+++
T Consensus 118 w~~~~~~~~~~~i~ldpg-~aFgtG~h~tt~l~l~~l~~~~~---------------~g~--~VLDvGcGsG~lai~aa~ 179 (288)
T TIGR00406 118 WRDVPSDEDALIIMLDPG-LAFGTGTHPTTSLCLEWLEDLDL---------------KDK--NVIDVGCGSGILSIAALK 179 (288)
T ss_pred CcCCCCCCCcEEEEECCC-CcccCCCCHHHHHHHHHHHhhcC---------------CCC--EEEEeCCChhHHHHHHHH
Confidence 555555567788999998 55555566888888888876533 567 999999999999999988
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhh
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALV 166 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l 166 (232)
.++.+++++|+++ ++..+++|...|. +...+.....+. . ....++||+|+++.. ...+..++..+.++|
T Consensus 180 ~g~~~V~avDid~~al~~a~~n~~~n~--~~~~~~~~~~~~---~--~~~~~~fDlVvan~~---~~~l~~ll~~~~~~L 249 (288)
T TIGR00406 180 LGAAKVVGIDIDPLAVESARKNAELNQ--VSDRLQVKLIYL---E--QPIEGKADVIVANIL---AEVIKELYPQFSRLV 249 (288)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeccc---c--cccCCCceEEEEecC---HHHHHHHHHHHHHHc
Confidence 8877999999998 5778888888776 323333333221 1 112458999998643 235567899999999
Q ss_pred CCCcEEEEEEeecChhHHHHHHHHHhcCceEEEec
Q 026858 167 ADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 167 ~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~ 201 (232)
+|||.++++..... ....+.+.+...|.+....
T Consensus 250 kpgG~li~sgi~~~--~~~~v~~~~~~~f~~~~~~ 282 (288)
T TIGR00406 250 KPGGWLILSGILET--QAQSVCDAYEQGFTVVEIR 282 (288)
T ss_pred CCCcEEEEEeCcHh--HHHHHHHHHHccCceeeEe
Confidence 99999999876543 3455666666557665543
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.66 E-value=6.2e-16 Score=123.91 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=86.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.+++ +|||+|||-|+++..+|+.|+ +|+++|+++ .+..++....+++.. +.+...... ++....++||+
T Consensus 58 l~g~--~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~----i~y~~~~~e---dl~~~~~~FDv 127 (243)
T COG2227 58 LPGL--RVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN----IDYRQATVE---DLASAGGQFDV 127 (243)
T ss_pred CCCC--eEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcccc----ccchhhhHH---HHHhcCCCccE
Confidence 5778 999999999999999999998 999999998 466666655655522 222222221 11122268999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChh
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPE 182 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~ 182 (232)
|+|..++.+.++...+++++.+++||||.+++++.+|+..
T Consensus 128 V~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 128 VTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred EEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 9999999999999999999999999999999999999853
No 11
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.64 E-value=1.8e-14 Score=119.17 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=112.1
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
|-++.- .....|.-+|+ +..|+-.++.+..+.+++..... +++ +|||+|||+|.+++.+++
T Consensus 79 ~~~~~~-~~~~~i~i~p~-~afgtg~h~tt~~~l~~l~~~~~---------------~~~--~VLDiGcGsG~l~i~~~~ 139 (250)
T PRK00517 79 WEDPPD-PDEINIELDPG-MAFGTGTHPTTRLCLEALEKLVL---------------PGK--TVLDVGCGSGILAIAAAK 139 (250)
T ss_pred CcCCCC-CCeEEEEECCC-CccCCCCCHHHHHHHHHHHhhcC---------------CCC--EEEEeCCcHHHHHHHHHH
Confidence 444433 56677888887 55555568989998888876543 567 999999999999998888
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhh
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALV 166 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l 166 (232)
.++.+++++|+|+ ++..+++|...+.. ...+.+.. .+.+||+|+++-. ...+..++..+.++|
T Consensus 140 ~g~~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~-----------~~~~fD~Vvani~---~~~~~~l~~~~~~~L 203 (250)
T PRK00517 140 LGAKKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQ-----------GDLKADVIVANIL---ANPLLELAPDLARLL 203 (250)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHcCC--CceEEEcc-----------CCCCcCEEEEcCc---HHHHHHHHHHHHHhc
Confidence 8876799999999 57788888887752 12221111 1127999998632 244677889999999
Q ss_pred CCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 167 ADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 167 ~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
+|||.++++..... ....+.+.+. .+|.+....
T Consensus 204 kpgG~lilsgi~~~--~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 204 KPGGRLILSGILEE--QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred CCCcEEEEEECcHh--hHHHHHHHHHHCCCEEEEEE
Confidence 99999999865443 2445556555 478877654
No 12
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.64 E-value=9.2e-15 Score=118.86 Aligned_cols=171 Identities=31% Similarity=0.488 Sum_probs=127.9
Q ss_pred CCCccceeechHHHHHHHHhhhCCCCCCCCCCCCccc-ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHH
Q 026858 26 SMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLL-DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPA 104 (232)
Q Consensus 26 ~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~ 104 (232)
.-+.+..+|+++..++.++..+... +|+.+.. .+..++.+|||||+|+|+.|+.+|.....+|+.+|....+..
T Consensus 49 ~~~~~~~~w~~~~~la~~~~~~~~~-----~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~ 123 (248)
T KOG2793|consen 49 EQGISAYLWSCATTLAQPLWERRRD-----SELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN 123 (248)
T ss_pred ccceeeEEeehhhccchhhhhhhcC-----chhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH
Confidence 4677889999999999998866541 2333321 233233389999999999999999864449999999987777
Q ss_pred HHHHHHhcCCCC---CCceEEEEeecCCCcccccCCCC-ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 105 LKHNLKRNKPVL---NKSLKTSVLYWNNQDQINALKPP-FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 105 ~~~n~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~~~-fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
...|...|...+ ..++....++|+.........+. +|+|++++++|..+..+.++..++.+|..++++++.++.|+
T Consensus 124 L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 124 LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 777766665333 34899999999998876555555 99999999999999999999999999999999999999888
Q ss_pred hhHHHHHHHHHhc---CceEEEec
Q 026858 181 PEAHKLFWEMCAE---VFLIEKVP 201 (232)
Q Consensus 181 ~~~~~~~~~~~~~---~f~~~~~~ 201 (232)
....+.+.-.+.. .|.+....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~ 227 (248)
T KOG2793|consen 204 DAAWEIEVLLFKKDLKIFDVVQES 227 (248)
T ss_pred chHHHHHHHHhhhhhccceeeeEe
Confidence 5333333333333 44544443
No 13
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.63 E-value=2.8e-14 Score=122.76 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=114.3
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
+.+|++. .+++...+|.++.+.. =.++..|...+... ... +|||||||+|.++..+++
T Consensus 159 ~~~y~~~--~l~i~~~pgvFs~~~l-D~gt~lLl~~l~~~-----------------~~g--~VLDlGCG~G~ls~~la~ 216 (342)
T PRK09489 159 WKEYQVD--GLTVKTLPGVFSRDGL-DVGSQLLLSTLTPH-----------------TKG--KVLDVGCGAGVLSAVLAR 216 (342)
T ss_pred ceeeecC--CEEEEeCCCCCCCCCC-CHHHHHHHHhcccc-----------------CCC--eEEEeccCcCHHHHHHHH
Confidence 5577764 4788899997765443 34455555555322 235 899999999999999987
Q ss_pred h-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCC-----cccHHHHHH
Q 026858 88 L-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYI-----EESAAQLVR 160 (232)
Q Consensus 88 ~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~-----~~~~~~~l~ 160 (232)
. +..+++++|+|+ ++..++.|...|... . .+...|... ...++||+|+++++++. ......+++
T Consensus 217 ~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~--~~~~~D~~~-----~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~ 287 (342)
T PRK09489 217 HSPKIRLTLSDVSAAALESSRATLAANGLE--G--EVFASNVFS-----DIKGRFDMIISNPPFHDGIQTSLDAAQTLIR 287 (342)
T ss_pred hCCCCEEEEEECCHHHHHHHHHHHHHcCCC--C--EEEEccccc-----ccCCCccEEEECCCccCCccccHHHHHHHHH
Confidence 6 334899999998 577888888877622 1 333333221 12468999999988874 235688999
Q ss_pred HHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCc-eEEEecCCCCCCCCCCCceEEEEEEecC
Q 026858 161 AMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVF-LIEKVPHEDLHPDYGYEETDVYILRKKK 223 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 223 (232)
.+.++|+|||.++++....- . .+. .+.+.| .++.+. ...++.+|...+.+
T Consensus 288 ~a~~~LkpgG~L~iVan~~l-~-y~~---~l~~~Fg~~~~la--------~~~~f~v~~a~~~~ 338 (342)
T PRK09489 288 GAVRHLNSGGELRIVANAFL-P-YPD---LLDETFGSHEVLA--------QTGRFKVYRAIMTR 338 (342)
T ss_pred HHHHhcCcCCEEEEEEeCCC-C-hHH---HHHHHcCCeEEEE--------eCCCEEEEEEEccC
Confidence 99999999999999875332 1 222 222223 344443 35556777665543
No 14
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.63 E-value=6e-16 Score=124.92 Aligned_cols=105 Identities=20% Similarity=0.319 Sum_probs=81.8
Q ss_pred CCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCC----ceEEEEeecCCCcccccCCCCc
Q 026858 66 STRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNK----SLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 66 ~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~~~f 140 (232)
|+ +|||+|||+|+++..+|+.|+ .|+|+|.++. ++.++.. +...+.... ++.+...+.+ +..+.|
T Consensus 90 g~--~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E------~~~~~f 159 (282)
T KOG1270|consen 90 GM--KILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVE------GLTGKF 159 (282)
T ss_pred Cc--eEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchh------hccccc
Confidence 46 899999999999999999998 9999999984 4444444 333333333 2333333322 233569
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|.|+|+.++.+..+...++..+.++|+|+|++++++.+|.
T Consensus 160 DaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 160 DAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred ceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 9999999999999999999999999999999999987775
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.62 E-value=3.9e-15 Score=107.73 Aligned_cols=104 Identities=21% Similarity=0.336 Sum_probs=79.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHH--hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYL--LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~--~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
|+. +|||||||+|..++.+++ .++ +++++|+|+ ++..++++..... ...++.+...|+ ... ....+.||
T Consensus 1 p~~--~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~-~~~--~~~~~~~D 72 (112)
T PF12847_consen 1 PGG--RVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEG--LSDRITFVQGDA-EFD--PDFLEPFD 72 (112)
T ss_dssp TTC--EEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEESCC-HGG--TTTSSCEE
T ss_pred CCC--EEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECcc-ccC--cccCCCCC
Confidence 346 999999999999999998 466 999999999 5677777774443 456788888887 111 11245799
Q ss_pred EEEEcc-cCC---CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAAD-VVY---IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~-~~~---~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|++.. ... ..+....+++.+.+.|+|||++++.+
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999988 332 12567888999999999999999875
No 16
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.61 E-value=7.9e-14 Score=109.60 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=92.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+++ +|||+|||+|..+..++..+. +++++|+++ ++..+++|...+.. .+.+...|+.... .++||+|
T Consensus 19 ~~~--~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~-----~~~fD~V 86 (179)
T TIGR00537 19 KPD--DVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV----GLDVVMTDLFKGV-----RGKFDVI 86 (179)
T ss_pred CCC--eEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC----ceEEEEccccccc-----CCcccEE
Confidence 446 899999999999999998877 999999999 46677777776542 2456666553322 3589999
Q ss_pred EEcccCCCccc---------------------HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 144 IAADVVYIEES---------------------AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 144 i~~~~~~~~~~---------------------~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
+++.+++.... ...+++.+.++|+|||.+++...... . ...+.+.++ .+|.++.+.
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-~-~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-G-EPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-C-hHHHHHHHHhCCCeEEEEE
Confidence 99887753321 46788999999999999999875443 1 334555555 489998887
Q ss_pred CCC
Q 026858 202 HED 204 (232)
Q Consensus 202 ~~~ 204 (232)
...
T Consensus 165 ~~~ 167 (179)
T TIGR00537 165 ERG 167 (179)
T ss_pred Eee
Confidence 654
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.60 E-value=9.9e-14 Score=109.59 Aligned_cols=139 Identities=19% Similarity=0.165 Sum_probs=98.0
Q ss_pred CCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 66 STRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 66 ~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+. +|||+|||+|..++.+++. +..+|+++|.++ ++..++++...+. +. .+.+...+..... . .++||+|
T Consensus 46 g~--~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~--l~-~i~~~~~d~~~~~---~-~~~fDlV 116 (187)
T PRK00107 46 GE--RVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG--LK-NVTVVHGRAEEFG---Q-EEKFDVV 116 (187)
T ss_pred CC--eEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC--CC-CEEEEeccHhhCC---C-CCCccEE
Confidence 56 9999999999999988864 334999999998 5667777777765 22 2777777765432 2 4589999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecCCCCCCCCCCCceEEEEEEec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPHEDLHPDYGYEETDVYILRKK 222 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~ 222 (232)
++.. ...++.+++.+.++|+|||++++...... ...+.+..+ .|+.+..+-...++.. +...|+.+++++
T Consensus 117 ~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 187 (187)
T PRK00107 117 TSRA----VASLSDLVELCLPLLKPGGRFLALKGRDP---EEEIAELPKALGGKVEEVIELTLPGL--DGERHLVIIRKK 187 (187)
T ss_pred EEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCCh---HHHHHHHHHhcCceEeeeEEEecCCC--CCcEEEEEEecC
Confidence 9864 25678899999999999999998864332 233444433 3777666544444433 555677776653
No 18
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=3.1e-14 Score=115.68 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=85.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||||-.++.+++. |..+|+++|+|+. +...++...... ... +.+...|.. .++..+.+||+
T Consensus 51 ~g~--~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~--~~~-i~fv~~dAe---~LPf~D~sFD~ 122 (238)
T COG2226 51 PGD--KVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG--VQN-VEFVVGDAE---NLPFPDNSFDA 122 (238)
T ss_pred CCC--EEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC--ccc-eEEEEechh---hCCCCCCccCE
Confidence 567 9999999999999999887 5559999999994 555555444322 212 566666554 44456789999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|.++..+.+..+++.++++++|+|||||++++......
T Consensus 123 vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 123 VTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred EEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 99999999999999999999999999999999876553
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.56 E-value=1e-13 Score=106.05 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=84.9
Q ss_pred cEEEeCccccHHHHHHHH-h-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYL-L-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~-~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|||+|||+|..+..++. . ...+++++|+|+ ++..++..++.+. .. ++.+...|+.+.... ..+.||+|++.
T Consensus 6 ~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~--~~-ni~~~~~d~~~l~~~--~~~~~D~I~~~ 80 (152)
T PF13847_consen 6 KILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG--LD-NIEFIQGDIEDLPQE--LEEKFDIIISN 80 (152)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT--ST-TEEEEESBTTCGCGC--SSTTEEEEEEE
T ss_pred EEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc--cc-ccceEEeehhccccc--cCCCeeEEEEc
Confidence 999999999999999994 3 234999999999 5666777666554 22 589999988773321 12689999999
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
.++++..+...+++.+.++|+++|.+++......
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~ 114 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHN 114 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHS
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECChH
Confidence 9999889999999999999999999999887643
No 20
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.56 E-value=2.4e-14 Score=121.94 Aligned_cols=108 Identities=15% Similarity=0.225 Sum_probs=83.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|.++..+++.++ +|+++|.++ ++..++.+...+. ....+.+...+..+. ....++||+|
T Consensus 131 ~g~--~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~l---~~~~~~FD~V 202 (322)
T PLN02396 131 EGL--KFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEKL---ADEGRKFDAV 202 (322)
T ss_pred CCC--EEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHHh---hhccCCCCEE
Confidence 556 899999999999999998887 999999998 4555555443332 223456666554322 2234689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
++.+++++..+...+++.+.++|+|||.+++.+.++.
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9999999999999999999999999999999875553
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.55 E-value=1e-13 Score=110.56 Aligned_cols=100 Identities=21% Similarity=0.357 Sum_probs=75.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..++.+++.+. +|+++|+|+ ++..++++...++ + .+.....+..... ..++||+|
T Consensus 30 ~~~--~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~--~--~v~~~~~d~~~~~----~~~~fD~I 98 (195)
T TIGR00477 30 APC--KTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKAREN--L--PLRTDAYDINAAA----LNEDYDFI 98 (195)
T ss_pred CCC--cEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhC--C--CceeEeccchhcc----ccCCCCEE
Confidence 446 899999999999999999887 999999998 4666666555443 2 1344444443221 23579999
Q ss_pred EEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEE
Q 026858 144 IAADVVYIE--ESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 144 i~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+++.++++. .....+++.+.++|+|||++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 998888643 56789999999999999996665
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.55 E-value=1.5e-13 Score=118.49 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=83.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||||||+|.++..+++. ++ +|+++|+|+. +..++.+...++ ...++.+...|..+.. ..+++||
T Consensus 117 ~~~~--~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~~~---~~~~~FD 188 (340)
T PLN02244 117 KRPK--RIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALNQP---FEDGQFD 188 (340)
T ss_pred CCCC--eEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCcccCC---CCCCCcc
Confidence 3556 8999999999999999876 66 9999999994 555555555544 3345677777765432 2356899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|++..++++..+...+++++.++|+|||++++.+
T Consensus 189 ~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 189 LVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999888899999999999999999999875
No 23
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.55 E-value=3.2e-14 Score=99.31 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=70.7
Q ss_pred EEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCC
Q 026858 72 IELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVY 150 (232)
Q Consensus 72 LElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~ 150 (232)
||+|||+|..+..+++.+..+++++|+++. +..+++..... .+.+...+.... +..+++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~------~~~~~~~d~~~l---~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE------GVSFRQGDAEDL---PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS------TEEEEESBTTSS---SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc------CchheeehHHhC---cccccccccccccccee
Confidence 899999999999999884449999999994 44444433222 234555555444 34567899999999999
Q ss_pred CcccHHHHHHHHHHhhCCCcEEEE
Q 026858 151 IEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 151 ~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
+.++...+++++.|+|||||++++
T Consensus 72 ~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eccCHHHHHHHHHHHcCcCeEEeC
Confidence 889999999999999999999986
No 24
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.54 E-value=3.9e-13 Score=105.82 Aligned_cols=126 Identities=14% Similarity=0.130 Sum_probs=87.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|.+++.++..+ ..+|+++|.++ ++..++++...++ + .++.+...|+.... ..++||+
T Consensus 42 ~~~--~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~--~-~~i~~i~~d~~~~~----~~~~fD~ 112 (181)
T TIGR00138 42 DGK--KVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG--L-NNVEIVNGRAEDFQ----HEEQFDV 112 (181)
T ss_pred CCC--eEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC--C-CCeEEEecchhhcc----ccCCccE
Confidence 467 99999999999999888663 34899999998 4556666666654 2 23777777765432 2468999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecCC
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPHE 203 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~~ 203 (232)
|++.. ....+.+++.+.++|+|||.+++..............+.+. .+++..+.+.-
T Consensus 113 I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 113 ITSRA----LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred EEehh----hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeecccc
Confidence 99864 24567788999999999999998754333222223333333 37776666543
No 25
>PRK14967 putative methyltransferase; Provisional
Probab=99.54 E-value=7.1e-13 Score=107.81 Aligned_cols=155 Identities=19% Similarity=0.136 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEc
Q 026858 18 LSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTD 97 (232)
Q Consensus 18 ~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D 97 (232)
+.+...+|.+.... .+..+.+++.... ..++. +|||+|||+|.+++.+++.++.+++++|
T Consensus 7 ~~~~~~~g~~~p~~----ds~~l~~~l~~~~--------------~~~~~--~vLDlGcG~G~~~~~la~~~~~~v~~vD 66 (223)
T PRK14967 7 DALLRAPGVYRPQE----DTQLLADALAAEG--------------LGPGR--RVLDLCTGSGALAVAAAAAGAGSVTAVD 66 (223)
T ss_pred ceeecCCCCcCCCC----cHHHHHHHHHhcc--------------cCCCC--eEEEecCCHHHHHHHHHHcCCCeEEEEE
Confidence 45566666444333 4567777776432 23556 9999999999999999887766999999
Q ss_pred chh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc---------------------cH
Q 026858 98 ISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE---------------------SA 155 (232)
Q Consensus 98 ~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~---------------------~~ 155 (232)
+++ ++..++.|...++. .+.+...|+.... ..++||+|+++.++.... .+
T Consensus 67 ~s~~~l~~a~~n~~~~~~----~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (223)
T PRK14967 67 ISRRAVRSARLNALLAGV----DVDVRRGDWARAV----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVL 138 (223)
T ss_pred CCHHHHHHHHHHHHHhCC----eeEEEECchhhhc----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHH
Confidence 998 56777777776542 2455555554321 235799999987654221 14
Q ss_pred HHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecC
Q 026858 156 AQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 156 ~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
..+++.+.++|++||++++...... . ...+++.+. .+|.++....
T Consensus 139 ~~~l~~a~~~Lk~gG~l~~~~~~~~-~-~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 139 DRLCDAAPALLAPGGSLLLVQSELS-G-VERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeccc-C-HHHHHHHHHHCCCCeEEEEe
Confidence 6678889999999999998765543 1 234555554 4777666544
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=9.2e-14 Score=115.26 Aligned_cols=106 Identities=17% Similarity=0.308 Sum_probs=83.7
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||+|||+|..+..++..+. +|+++|+|+ ++..++++....+ +..++.+...+..+... ...++||+|++..+
T Consensus 47 ~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~v 121 (255)
T PRK11036 47 RVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQ--HLETPVDLILFHAV 121 (255)
T ss_pred EEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhh--hcCCCCCEEEehhH
Confidence 899999999999999999887 999999998 5666666665543 33445666665543221 12468999999999
Q ss_pred CCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 149 VYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+++..+...+++.+.++|+|||.+++...+.+
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 98888889999999999999999998765543
No 27
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=1.8e-13 Score=109.24 Aligned_cols=101 Identities=21% Similarity=0.369 Sum_probs=77.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+. +|+++|+|+ ++..++++...+. + ..+.+...|+.... ..+.||+|
T Consensus 30 ~~~--~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~--~-~~v~~~~~d~~~~~----~~~~fD~I 99 (197)
T PRK11207 30 KPG--KTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAEN--L-DNLHTAVVDLNNLT----FDGEYDFI 99 (197)
T ss_pred CCC--cEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcC--C-CcceEEecChhhCC----cCCCcCEE
Confidence 456 999999999999999999887 999999998 4666666655543 2 22556666654332 23579999
Q ss_pred EEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEE
Q 026858 144 IAADVVYIE--ESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 144 i~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+++.++++. .....+++.+.++|+|||.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999888643 46889999999999999996654
No 28
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.53 E-value=4.1e-14 Score=109.60 Aligned_cols=132 Identities=26% Similarity=0.380 Sum_probs=110.1
Q ss_pred CCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHH
Q 026858 26 SMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPA 104 (232)
Q Consensus 26 ~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~ 104 (232)
....|...|.+++.|++|+..+++ ...++ +|||+|+|+|+.++..++.|+..++.+|+++ .+.+
T Consensus 53 pPpfwa~~WagG~~lAR~i~~~Pe-------------tVrgk--rVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~a 117 (218)
T COG3897 53 PPPFWAFAWAGGQVLARYIDDHPE-------------TVRGK--RVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQA 117 (218)
T ss_pred CchHHHHHHhhhHHHHHHHhcCcc-------------ccccc--eeeecccccChHHHHHHHhhhHHHHhcCCChHHHHH
Confidence 345888999999999999999998 88999 9999999999999999999999999999998 3666
Q ss_pred HHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChh
Q 026858 105 LKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPE 182 (232)
Q Consensus 105 ~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~ 182 (232)
+..|...|+.. +.+...|... .+..||+|++++++|.......++.+..++...|-.+++.++.|.+.
T Consensus 118 i~lNa~angv~----i~~~~~d~~g------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 118 IRLNAAANGVS----ILFTHADLIG------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred hhcchhhccce----eEEeeccccC------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 67777766532 3555544332 24679999999999999999999998888888888888888888754
No 29
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.52 E-value=1.2e-13 Score=112.78 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=76.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||||.++..+++. + ..+|+++|+|+ ++..+++...... . .++.+...|..+.+ ..+++||
T Consensus 47 ~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~--~-~~i~~v~~da~~lp---~~d~sfD 118 (233)
T PF01209_consen 47 PGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG--L-QNIEFVQGDAEDLP---FPDNSFD 118 (233)
T ss_dssp S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB-----S-TT-EE
T ss_pred CCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC--C-CCeeEEEcCHHHhc---CCCCcee
Confidence 566 9999999999999998875 2 34999999999 4556666555443 1 25677777665433 3467899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
.|+++..+.+..+...++++++|+|||||++++.+..+.
T Consensus 119 ~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 119 AVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp EEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred EEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 999999999888999999999999999999999876654
No 30
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.52 E-value=4e-13 Score=111.81 Aligned_cols=110 Identities=11% Similarity=0.004 Sum_probs=81.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||||..+..+++. + ..+|+++|+|+. +..++++..........++.+...|....+ ..+++||
T Consensus 73 ~~~--~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD 147 (261)
T PLN02233 73 MGD--RVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---FDDCYFD 147 (261)
T ss_pred CCC--EEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---CCCCCEe
Confidence 556 9999999999999888875 3 248999999994 555544332111112234677777654432 3456899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
.|+++.++++..+...+++++.++|+|||++++.+...
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 99999999988899999999999999999999986543
No 31
>PRK14968 putative methyltransferase; Provisional
Probab=99.51 E-value=1.6e-12 Score=102.54 Aligned_cols=157 Identities=21% Similarity=0.194 Sum_probs=104.8
Q ss_pred eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHh
Q 026858 33 VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 33 ~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
-++.+..+.+++.. .+++ +|||+|||+|..+..++..+. +++++|.++ ++..+++++..
T Consensus 8 p~~~~~~l~~~~~~-----------------~~~~--~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~ 67 (188)
T PRK14968 8 PAEDSFLLAENAVD-----------------KKGD--RVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKL 67 (188)
T ss_pred cchhHHHHHHhhhc-----------------cCCC--EEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHH
Confidence 35666777776653 2456 899999999999999988875 999999998 56777777766
Q ss_pred cCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc---------------------ccHHHHHHHHHHhhCCCc
Q 026858 112 NKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE---------------------ESAAQLVRAMEALVADDG 170 (232)
Q Consensus 112 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~---------------------~~~~~~l~~l~~~l~pgG 170 (232)
+... ...+.+...|+.... ....||+|+++.+++.. ..+..+++.+.++|+|||
T Consensus 68 ~~~~-~~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG 142 (188)
T PRK14968 68 NNIR-NNGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG 142 (188)
T ss_pred cCCC-CcceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCe
Confidence 5421 111566666654322 22379999997766431 125668999999999999
Q ss_pred EEEEEEeecChhHHHHHHHHHhc-CceEEEecCCCCCCCCCCCceEEEEEE
Q 026858 171 VVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVPHEDLHPDYGYEETDVYILR 220 (232)
Q Consensus 171 ~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~~ 220 (232)
.+++...... ..+.+.+.+.+ +|.+..+... .+..+.+.+...+
T Consensus 143 ~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~ 187 (188)
T PRK14968 143 RILLLQSSLT--GEDEVLEYLEKLGFEAEVVAEE----KFPFEELIVLELV 187 (188)
T ss_pred EEEEEEcccC--CHHHHHHHHHHCCCeeeeeeec----ccCCceEEEEEEe
Confidence 9888764332 13445566654 7877665432 2345555555443
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.50 E-value=4.5e-13 Score=113.72 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=78.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..+++ +|||+|||+|..+..++..++..|+++|.|+.+......++... .....+.+...++.+... ...||+
T Consensus 119 ~~~g~--~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~-~~~~~v~~~~~~ie~lp~----~~~FD~ 191 (314)
T TIGR00452 119 PLKGR--TILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL-DNDKRAILEPLGIEQLHE----LYAFDT 191 (314)
T ss_pred CCCCC--EEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh-ccCCCeEEEECCHHHCCC----CCCcCE
Confidence 34667 99999999999998888888768999999984332222111111 011334555555443321 247999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|++..++|+..+...+++.++++|+|||.+++.+
T Consensus 192 V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 192 VFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999999999999999999999999999999864
No 33
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.49 E-value=7e-13 Score=113.42 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=79.4
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHH-HHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMP-ALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~-~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..++ +|||||||+|..+..++..++..|+++|.|+.+. .......... ...++.+...++.... . .+.||+
T Consensus 121 l~g~--~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp---~-~~~FD~ 192 (322)
T PRK15068 121 LKGR--TVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLP---A-LKAFDT 192 (322)
T ss_pred CCCC--EEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCC---C-cCCcCE
Confidence 4667 9999999999999999988876899999998432 2111111111 1234677776654433 2 467999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|++..++|+..+...+++.++++|+|||.+++..
T Consensus 193 V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 193 VFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999999999999999999999999998853
No 34
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.48 E-value=4.8e-13 Score=102.58 Aligned_cols=98 Identities=22% Similarity=0.337 Sum_probs=76.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+++ +|||||||+|..+..++..+. +++++|+++.+... .+ +.....+.... ....++||+|+
T Consensus 22 ~~~--~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~~-------~~~~~~~~~~~---~~~~~~fD~i~ 83 (161)
T PF13489_consen 22 PGK--RVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----RN-------VVFDNFDAQDP---PFPDGSFDLII 83 (161)
T ss_dssp TTS--EEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----TT-------SEEEEEECHTH---HCHSSSEEEEE
T ss_pred CCC--EEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----hh-------hhhhhhhhhhh---hccccchhhHh
Confidence 556 999999999999999988888 99999999832222 11 12232221111 12346899999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
++.++++..+...+++.+.++|+|||.+++....+.
T Consensus 84 ~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 84 CNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp EESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred hHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 999999999999999999999999999999998764
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.47 E-value=1.1e-12 Score=109.61 Aligned_cols=103 Identities=13% Similarity=0.223 Sum_probs=76.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..+|. +|||||||.|.+++.+|+. |+ +|+++++|+. ...+++.+...+ +..++.+...|+.+. +++|
T Consensus 60 l~~G~--~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~~------~~~f 128 (273)
T PF02353_consen 60 LKPGD--RVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRDL------PGKF 128 (273)
T ss_dssp --TT---EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG---------S-
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeecccc------CCCC
Confidence 67899 9999999999999999988 98 9999999985 456666555554 556777777776433 3489
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|.|++..++.+. ...+.+++.+.++|+|||++++-.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999999998654 688999999999999999998754
No 36
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=9.7e-13 Score=108.92 Aligned_cols=120 Identities=13% Similarity=0.191 Sum_probs=93.9
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcC
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNK 113 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~ 113 (232)
+...-.+.+...+. ..+|+ +|||||||.|.+++.+|+. +. +|+++++|+. ...+++.+...+
T Consensus 56 AQ~~k~~~~~~kl~-------------L~~G~--~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~g 119 (283)
T COG2230 56 AQRAKLDLILEKLG-------------LKPGM--TLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARG 119 (283)
T ss_pred HHHHHHHHHHHhcC-------------CCCCC--EEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcC
Confidence 33444555666555 67999 9999999999999999988 77 9999999995 455555555555
Q ss_pred CCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 114 PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 114 ~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+..++++...||.+.. +.||-|++...+.+. +..+.+++.+.++|+|||++++-...+
T Consensus 120 --l~~~v~v~l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 120 --LEDNVEVRLQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred --CCcccEEEeccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 4466788888876655 459999999999654 459999999999999999988865433
No 37
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.47 E-value=1.3e-12 Score=106.19 Aligned_cols=126 Identities=14% Similarity=0.169 Sum_probs=92.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||+|..+..+++. +..+++++|+|+. +..++.+....+ +..++.+...|..... ..++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~~----~~~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKDP----FPDTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccCC----CCCCCCEeehHH
Confidence 7999999999999888876 2238999999984 556666665544 4456677777764432 135799999999
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC-------------hhHHHHHHHHHh-cCceEEEec
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLRS-------------PEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~-------------~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
++++..+...+++.+.++|+|||.+++...... ......+.+.+. .+|.+....
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 998888899999999999999999998764211 112344555555 488876654
No 38
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.47 E-value=9.6e-13 Score=109.63 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=77.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|..+..++.. ++ +|+++|+++. +..++.+... ..++.+...|+.... ..+++|
T Consensus 50 l~~~~--~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~---~~~~~F 118 (263)
T PTZ00098 50 LNENS--KVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKD---FPENTF 118 (263)
T ss_pred CCCCC--EEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCC---CCCCCe
Confidence 44667 9999999999999888765 55 9999999984 4444443221 234677776654322 234689
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+|++.+++++. .+...+++.+.++|+|||.+++.+.
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999998877654 3789999999999999999999865
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.46 E-value=8.5e-13 Score=111.33 Aligned_cols=125 Identities=18% Similarity=0.328 Sum_probs=89.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..++.+++.|. +|+++|.|+ ++..++++...+.. .+.+...|..... .+++||+|
T Consensus 120 ~~~--~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l----~v~~~~~D~~~~~----~~~~fD~I 188 (287)
T PRK12335 120 KPG--KALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL----NIRTGLYDINSAS----IQEEYDFI 188 (287)
T ss_pred CCC--CEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC----ceEEEEechhccc----ccCCccEE
Confidence 445 899999999999999999887 999999998 46667776665542 3456665554332 25689999
Q ss_pred EEcccCCC--cccHHHHHHHHHHhhCCCcEEEEEEeec-----------ChhHHHHHHHHHhcCceEEEec
Q 026858 144 IAADVVYI--EESAAQLVRAMEALVADDGVVLLGYQLR-----------SPEAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 144 i~~~~~~~--~~~~~~~l~~l~~~l~pgG~l~i~~~~r-----------~~~~~~~~~~~~~~~f~~~~~~ 201 (232)
++..++++ .+.+..+++.+.++|+|||.+++..... .......+.+.+. +|++....
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~-~~~i~~~~ 258 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ-DWEIVKYN 258 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC-CCEEEEEe
Confidence 99988764 3578899999999999999977643111 0122344555554 47776654
No 40
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.46 E-value=2.7e-14 Score=101.30 Aligned_cols=96 Identities=23% Similarity=0.303 Sum_probs=56.0
Q ss_pred EEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccEEEEccc
Q 026858 72 IELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDLVIAADV 148 (232)
Q Consensus 72 LElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~Ii~~~~ 148 (232)
||||||+|.++..++.. ...+++++|+|+ ++..+++....... . ......+......... .++||+|+++.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN---D--NFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC---c--ceeEEEeecCChhhcccccccceehhhhh
Confidence 79999999999888766 334999999998 44344444443321 1 2222233222221111 248999999999
Q ss_pred CCCcccHHHHHHHHHHhhCCCcEE
Q 026858 149 VYIEESAAQLVRAMEALVADDGVV 172 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG~l 172 (232)
+++.+++..+++.++++|+|||.+
T Consensus 76 l~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS--S-HHHHHHHHTTT-TSS-EE
T ss_pred HhhhhhHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999986
No 41
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.44 E-value=1.2e-11 Score=115.92 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=108.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.++ +|||+|||||.+++.+++.|+.+|+++|+|+ ++..+++|+..|+... .++.+...|+.+... ...++||+|
T Consensus 538 ~g~--rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~-~~v~~i~~D~~~~l~--~~~~~fDlI 612 (702)
T PRK11783 538 KGK--DFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSG-RQHRLIQADCLAWLK--EAREQFDLI 612 (702)
T ss_pred CCC--eEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-cceEEEEccHHHHHH--HcCCCcCEE
Confidence 457 9999999999999999998887899999998 6889999999887321 357777777543211 123579999
Q ss_pred EEcccCCCc-----------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCCCCCCCC-C
Q 026858 144 IAADVVYIE-----------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYG-Y 211 (232)
Q Consensus 144 i~~~~~~~~-----------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 211 (232)
++.++.+.. .+...++..+.++|+|||.+++....+.... ........++.+..+.....+++|. .
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~~Dhp~~ 690 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM--DEEGLAKLGLKAEEITAKTLPPDFARN 690 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh--hHHHHHhCCCeEEEEecCCCCCCCCCC
Confidence 997765432 1356788888999999999988765554321 1222233589999999888888874 4
Q ss_pred CceE-EEEEE
Q 026858 212 EETD-VYILR 220 (232)
Q Consensus 212 ~~~~-l~~~~ 220 (232)
+++| .|.|.
T Consensus 691 ~~~~~~~~~~ 700 (702)
T PRK11783 691 PKIHNCWLIT 700 (702)
T ss_pred cccceeEEEe
Confidence 5555 56554
No 42
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.44 E-value=1.3e-12 Score=102.96 Aligned_cols=101 Identities=26% Similarity=0.427 Sum_probs=75.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+.. ++||||||.|..++.+|++|+ .|+++|.|+. +..+.+-+.... + .+.....|+.... .++.||+|
T Consensus 30 ~~g--~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~--l--~i~~~~~Dl~~~~----~~~~yD~I 98 (192)
T PF03848_consen 30 KPG--KALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG--L--DIRTRVADLNDFD----FPEEYDFI 98 (192)
T ss_dssp -SS--EEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-----TTTEEEE
T ss_pred CCC--cEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC--c--eeEEEEecchhcc----ccCCcCEE
Confidence 445 899999999999999999999 9999999994 666655444443 2 2677777776554 24679999
Q ss_pred EEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 144 IAADVVY--IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 144 i~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++.-+++ ..+.++.+++.+.+.++|||.+++..
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 9865553 67788999999999999999988853
No 43
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.44 E-value=1.9e-12 Score=107.03 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=76.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+.. +|||+|||+|.++..++..+. +++++|+|+. +..++.+.. ...+...|+.... ..+++||+|
T Consensus 42 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~---~~~~~fD~V 107 (251)
T PRK10258 42 KFT--HVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLP---LATATFDLA 107 (251)
T ss_pred CCC--eEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCc---CCCCcEEEE
Confidence 345 899999999999988888776 9999999984 444443221 1134444443322 234579999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+++.++++..+...++..+.++|+|||.+++.....
T Consensus 108 ~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 108 WSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred EECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999888899999999999999999999986543
No 44
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=2.2e-12 Score=107.04 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=73.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||||||+|.++..+++. +. +++++|+|+. +..++. .+ +.+...|..... ..++||
T Consensus 29 ~~~--~vLDlGcG~G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~---~~-------~~~~~~d~~~~~----~~~~fD 91 (255)
T PRK14103 29 RAR--RVVDLGCGPGNLTRYLARRWPGA-VIEALDSSPEMVAAARE---RG-------VDARTGDVRDWK----PKPDTD 91 (255)
T ss_pred CCC--EEEEEcCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHh---cC-------CcEEEcChhhCC----CCCCce
Confidence 556 9999999999999988876 44 8999999984 333322 11 345555543221 245899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 92 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 92 VVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 99999999988899999999999999999999864
No 45
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.41 E-value=7.6e-12 Score=102.10 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=81.6
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.+++ +|||+|||+|..+..+++. + ..+++++|+++ ++..++.+..... . .++.+...|..... ...++|
T Consensus 44 ~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~---~~~~~f 115 (231)
T TIGR02752 44 QAGT--SALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG--L-HNVELVHGNAMELP---FDDNSF 115 (231)
T ss_pred CCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC--C-CceEEEEechhcCC---CCCCCc
Confidence 3567 9999999999999988865 2 34999999998 4666666655443 2 34666666654432 224689
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+|+++.++++..+...+++.+.++|+|||.+++.+.
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 9999998888888889999999999999999998754
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.40 E-value=5.8e-12 Score=113.39 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=81.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|..++.++.. ++ +++++|+|+ ++..++++... ...++.+...|+.... ..+++||+
T Consensus 266 ~~~--~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~----~~~~v~~~~~d~~~~~---~~~~~fD~ 335 (475)
T PLN02336 266 PGQ--KVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAIG----RKCSVEFEVADCTKKT---YPDNSFDV 335 (475)
T ss_pred CCC--EEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhc----CCCceEEEEcCcccCC---CCCCCEEE
Confidence 456 9999999999999888875 66 899999998 45555554431 2345677777765543 12457999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
|++..++++..+...+++.++++|+|||.+++.+..
T Consensus 336 I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 336 IYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred EEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 999999999899999999999999999999998653
No 47
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.40 E-value=4.6e-12 Score=104.60 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=78.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh---CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL---GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~---~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
++. +|||||||+|..+..+++. +..+++++|.|+ ++..++++...+. ...++.+...++.... .+.+
T Consensus 56 ~~~--~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~~~~~-----~~~~ 126 (247)
T PRK15451 56 PGT--QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIA-----IENA 126 (247)
T ss_pred CCC--EEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCChhhCC-----CCCC
Confidence 556 8999999999999888762 223999999998 5667777766543 2335677666654332 2358
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|+|+++.++++. .....+++.++++|+|||.+++.+...
T Consensus 127 D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 127 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred CEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 999998887643 345789999999999999999987543
No 48
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=9.9e-12 Score=103.15 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=75.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||||||+|.++..++.. +..+++++|+|+. +..++++. .++.+...|..... ...+||
T Consensus 30 ~~~~--~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~----~~~~fD 95 (258)
T PRK01683 30 ENPR--YVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ----PPQALD 95 (258)
T ss_pred cCCC--EEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC----CCCCcc
Confidence 3556 9999999999999888876 3349999999984 44444331 12355555543221 235899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999999888899999999999999999998864
No 49
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.38 E-value=6e-11 Score=96.86 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=81.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC--CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG--LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++... ..+++++|+++ ++..++++...+. ....+.+...|..... ...+.||
T Consensus 51 ~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~---~~~~~~D 123 (239)
T PRK00216 51 PGD--KVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALP---FPDNSFD 123 (239)
T ss_pred CCC--eEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCC---CCCCCcc
Confidence 456 99999999999999888774 35999999998 4556666554332 2234566666654433 2245799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|+++.++++..+...+++.+.++|+|||.+++...
T Consensus 124 ~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 124 AVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 999998888888999999999999999999988754
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.38 E-value=5.5e-11 Score=94.08 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=81.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|.+++.+++.. ..+++++|.++ ++..+++|+..+. + .++.+...+... ...++||+
T Consensus 31 ~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~--~-~~i~~~~~d~~~-----~~~~~~D~ 100 (187)
T PRK08287 31 RAK--HLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG--C-GNIDIIPGEAPI-----ELPGKADA 100 (187)
T ss_pred CCC--EEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC--C-CCeEEEecCchh-----hcCcCCCE
Confidence 566 99999999999999998763 34899999998 5677777777654 2 235555554321 12357999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-Cc
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VF 195 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f 195 (232)
|++.... ..+..+++.+.+.|+|||++++..... .....+.+.+++ +|
T Consensus 101 v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~~--~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 101 IFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFILL--ENLHSALAHLEKCGV 149 (187)
T ss_pred EEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEecH--hhHHHHHHHHHHCCC
Confidence 9986543 346778999999999999998865332 223445555543 55
No 51
>PRK04266 fibrillarin; Provisional
Probab=99.37 E-value=8.5e-11 Score=95.61 Aligned_cols=131 Identities=17% Similarity=0.162 Sum_probs=81.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||+|||+|..+..+++. +.++|+++|.++ ++..+.+++... .++.+...|............+|
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l~~~~ 142 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHVVEKV 142 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhccccC
Confidence 44777 9999999999999999876 334899999998 455454444322 12455555544321111123569
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec------Ch-hHHHHHHHHHh-cCceEEEecC
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR------SP-EAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r------~~-~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
|+|++... .+.....+++++.++|||||.++++-+.+ .+ ...+...+.++ .+|+......
T Consensus 143 D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 143 DVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred CEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 99996422 12233456899999999999999942221 11 11122334554 4898776654
No 52
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.37 E-value=6.9e-12 Score=100.52 Aligned_cols=126 Identities=8% Similarity=-0.003 Sum_probs=87.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeec-CCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYW-NNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..+++. +..+++++|+|+ ++..++++...+. . .++.+...|+ ..... ....+.||
T Consensus 40 ~~~--~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~--~-~~v~~~~~d~~~~l~~-~~~~~~~D 113 (202)
T PRK00121 40 DAP--IHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG--L-TNLRLLCGDAVEVLLD-MFPDGSLD 113 (202)
T ss_pred CCC--eEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC--C-CCEEEEecCHHHHHHH-HcCccccc
Confidence 445 9999999999999988876 334899999998 5777777776654 2 3467777766 32110 01245799
Q ss_pred EEEEcccCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEE
Q 026858 142 LVIAADVVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIE 198 (232)
Q Consensus 142 ~Ii~~~~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~ 198 (232)
.|++..+..+.. ....+++.+.++|+|||.+++...... ......+.++ .++.++
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH--HHHHHHHHHHhCccccc
Confidence 999865432211 257889999999999999999875443 2344555554 477665
No 53
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.36 E-value=1.2e-11 Score=105.88 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=88.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|..+..+++. +..+++++|.++. +..++++... .++.+...|..... ...+.||+
T Consensus 113 ~~~--~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp---~~~~sFDv 181 (340)
T PLN02490 113 RNL--KVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLP---FPTDYADR 181 (340)
T ss_pred CCC--EEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCC---CCCCceeE
Confidence 456 9999999999998888765 3348999999984 4444443321 12455555543322 23467999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC--------------hhHHHHHHHHHhc-CceEEEecC
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS--------------PEAHKLFWEMCAE-VFLIEKVPH 202 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~--------------~~~~~~~~~~~~~-~f~~~~~~~ 202 (232)
|+++.++++..+...+++++.++|+|||++++...... ....+.+.+.+++ +|....+.+
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 99999998888889999999999999999988653211 1124556666665 897666543
No 54
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.36 E-value=5.2e-11 Score=100.23 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=85.4
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||+|||+|.+++.+++. ...+++++|+|+ ++..+++|+..++ +..++.+...|+.... ..++||+|++++
T Consensus 124 ~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~~~----~~~~fD~Iv~NP 197 (284)
T TIGR03533 124 RILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFAAL----PGRKYDLIVSNP 197 (284)
T ss_pred EEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhcc----CCCCccEEEECC
Confidence 8999999999999999976 223999999998 5788888888775 3345777777764322 124799999987
Q ss_pred cCCCcc-------------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEe
Q 026858 148 VVYIEE-------------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKV 200 (232)
Q Consensus 148 ~~~~~~-------------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~ 200 (232)
+..... ....++..+.++|+|||.+++-... . .+.+.+.+.+ +|.+...
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~---~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-S---MEALEEAYPDVPFTWLEF 272 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-C---HHHHHHHHHhCCCceeee
Confidence 643211 1356788889999999999875432 2 2355555554 5655443
No 55
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.36 E-value=1.6e-11 Score=102.71 Aligned_cols=106 Identities=11% Similarity=0.182 Sum_probs=80.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CC-CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GL-ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~-~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||||||+|..++.+++. +. .+++++|+++ ++..++++...... .++.+...++.... ..+++
T Consensus 75 ~~~g~--~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~---~~v~~~~~d~~~l~---~~~~~ 146 (272)
T PRK11873 75 LKPGE--TVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY---TNVEFRLGEIEALP---VADNS 146 (272)
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC---CCEEEEEcchhhCC---CCCCc
Confidence 34677 9999999999988877765 43 3799999998 46666766655432 24566666654322 23458
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||+|+++.++++..+...+++.+.++|+|||++++..
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999998888888888999999999999999999964
No 56
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.36 E-value=7e-12 Score=98.09 Aligned_cols=117 Identities=12% Similarity=0.173 Sum_probs=83.2
Q ss_pred CCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-CCCCccEEE
Q 026858 68 RRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-LKPPFDLVI 144 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii 144 (232)
+..|||+|||||..=-+.-.. ++ +|+++|.++ +...+.+.+.++.+. ++..+.+...+..++ .++++|.||
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~-svt~lDpn~~mee~~~ks~~E~k~~-----~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPIN-SVTCLDPNEKMEEIADKSAAEKKPL-----QVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccccCCCCc-eEEEeCCcHHHHHHHHHHHhhccCc-----ceEEEEeechhcCcccccCCeeeEE
Confidence 457899999999644333322 45 999999999 455666666665322 444444444444432 356899999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh-hHHHHHHHH
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP-EAHKLFWEM 190 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~-~~~~~~~~~ 190 (232)
+..++=+.++....+.++.++|+|||++++..+.+.. .....+++.
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQ 197 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHH
Confidence 9999988899999999999999999999999887752 333444443
No 57
>PRK08317 hypothetical protein; Provisional
Probab=99.36 E-value=2.3e-11 Score=99.12 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=79.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||+|||+|..+..++.. ...+++++|.++. +..++++... ....+.+...|..... ...+.
T Consensus 17 ~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~---~~~~~ 87 (241)
T PRK08317 17 VQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----LGPNVEFVRGDADGLP---FPDGS 87 (241)
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----CCCceEEEecccccCC---CCCCC
Confidence 44667 9999999999999888865 2348999999984 4444444221 2234566666554322 23467
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||+|++..++.+..+...+++.+.++|+|||.+++..
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 9999999999888899999999999999999999875
No 58
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.1e-10 Score=97.82 Aligned_cols=112 Identities=22% Similarity=0.339 Sum_probs=80.9
Q ss_pred cEEEeCccccHHHHHHHHhCC-CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGL-ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~-~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||||.+++.++.... .+|+++|+|+ ++..++.|+..++. .++.....||-.. ..++||+||+++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~-----~~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEP-----LRGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeecccc-----cCCceeEEEeCC
Confidence 699999999999999998742 3999999999 68899999999873 3344444465433 345899999987
Q ss_pred cCCCcc-------------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh
Q 026858 148 VVYIEE-------------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA 192 (232)
Q Consensus 148 ~~~~~~-------------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~ 192 (232)
+.-..+ ....++..+.+.|+|||.+++-..... .+...+.+.
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q---~~~v~~~~~ 251 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ---GEAVKALFE 251 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc---HHHHHHHHH
Confidence 764322 256677778889999888887653232 234444444
No 59
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.33 E-value=1.9e-11 Score=101.58 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=77.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH--HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV--MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~--~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
...++ +|||||||.|..+..++..|++.|+|+|.+.. ++...-+...+ ....+....+.+.... . .+.|
T Consensus 113 ~L~gk--~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg---~~~~~~~lplgvE~Lp---~-~~~F 183 (315)
T PF08003_consen 113 DLKGK--RVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG---QDPPVFELPLGVEDLP---N-LGAF 183 (315)
T ss_pred CcCCC--EEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC---CCccEEEcCcchhhcc---c-cCCc
Confidence 55788 99999999999999999999989999999873 22222111111 1112233333333322 2 4689
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|+|++..++||..+.-..+..++..|++||.+++-
T Consensus 184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 99999999999999999999999999999999873
No 60
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.33 E-value=8.5e-11 Score=97.24 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=101.9
Q ss_pred EEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEE
Q 026858 18 LSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLT 96 (232)
Q Consensus 18 ~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~ 96 (232)
+++...++.+.. + +.+..|.+.+...... ..... +|||+|||+|.+++.+++. +..+++++
T Consensus 55 ~~~~v~~~vf~p--r--~~Te~Lv~~~l~~~~~------------~~~~~--~vLDlg~GsG~i~l~la~~~~~~~v~~v 116 (251)
T TIGR03704 55 LRIAVDPGVFVP--R--RRTEFLVDEAAALARP------------RSGTL--VVVDLCCGSGAVGAALAAALDGIELHAA 116 (251)
T ss_pred eEEEECCCCcCC--C--ccHHHHHHHHHHhhcc------------cCCCC--EEEEecCchHHHHHHHHHhCCCCEEEEE
Confidence 345555554421 1 3466677776554320 11234 8999999999999998865 33389999
Q ss_pred cchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc----------------------
Q 026858 97 DISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE---------------------- 153 (232)
Q Consensus 97 D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~---------------------- 153 (232)
|+|+ ++..+++|+..++ +.+...|+...... ...++||+|+++++.....
T Consensus 117 Dis~~al~~A~~N~~~~~------~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~ 189 (251)
T TIGR03704 117 DIDPAAVRCARRNLADAG------GTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGA 189 (251)
T ss_pred ECCHHHHHHHHHHHHHcC------CEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCC
Confidence 9998 5778888887664 14555665432210 1135799999987754211
Q ss_pred ----cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecCCC
Q 026858 154 ----SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPHED 204 (232)
Q Consensus 154 ----~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~~~ 204 (232)
....++..+.++|+|||.+++...... ...+...+. .+|......+..
T Consensus 190 dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~---~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 190 DGLDVLRRVAAGAPDWLAPGGHLLVETSERQ---APLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred cHHHHHHHHHHHHHHhcCCCCEEEEEECcch---HHHHHHHHHHCCCCceeeEccc
Confidence 134777888899999999998764333 344555555 378776665443
No 61
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.33 E-value=1.4e-10 Score=92.55 Aligned_cols=125 Identities=12% Similarity=0.101 Sum_probs=86.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||+|||+|.+++.+++. +..+++++|.++ +++.+++|+..++ +..++.+...|..... ....+.
T Consensus 38 ~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l--~~~~~~ 111 (198)
T PRK00377 38 LRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEIL--FTINEK 111 (198)
T ss_pred CCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhH--hhcCCC
Confidence 44677 9999999999999998865 234899999998 5677777777664 2234566665543321 122357
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIE 198 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~ 198 (232)
||.|++.. ....+..+++.+.++|+|||++++... .........+.++ .+|.++
T Consensus 112 ~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 112 FDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNLE 166 (198)
T ss_pred CCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCeE
Confidence 99999854 235678899999999999999987432 2233455555554 366443
No 62
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.33 E-value=5.3e-12 Score=91.98 Aligned_cols=105 Identities=22% Similarity=0.277 Sum_probs=79.1
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||+|||+|.+++.+++.+..+++++|+++ .+..++.+...+. ...++.+...|+..... ....++||+|+++++
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~-~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPE-PLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHH-TCTTT-EEEEEE--S
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchh-hccCceeEEEEECCC
Confidence 8999999999999999988744999999999 4677777777765 34557777777644331 123468999999888
Q ss_pred CCCc--------ccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 149 VYIE--------ESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 149 ~~~~--------~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+... .....+++.+.++|+|||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7632 2356789999999999999998764
No 63
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.33 E-value=1.9e-11 Score=100.40 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=78.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh---CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL---GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~---~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
++. +|||||||+|..+..+++. +..+++++|+|+ ++..+++++.... ...++.+...|+.... ...+
T Consensus 53 ~~~--~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~-----~~~~ 123 (239)
T TIGR00740 53 PDS--NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVE-----IKNA 123 (239)
T ss_pred CCC--EEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCC-----CCCC
Confidence 456 8999999999999888764 223899999998 5666666654432 2234677776665433 2358
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|+|+++.++++. .+...+++.+.++|+|||.+++.+..+
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 999998887654 356889999999999999999987544
No 64
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.33 E-value=1.3e-10 Score=101.96 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=93.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~ 142 (232)
+++ +|||+|||+|.+++.++..++.+|+++|+|+ ++..+++|+..|+... .++.+...|+..... .....++||+
T Consensus 220 ~g~--rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~-~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENK--RVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-SKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCC--eEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-CcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 457 9999999999999988777777999999999 5888899999887321 356777776543221 1111347999
Q ss_pred EEEcccCCCcc---------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-----cCceEEEecCCCCCCC
Q 026858 143 VIAADVVYIEE---------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-----EVFLIEKVPHEDLHPD 208 (232)
Q Consensus 143 Ii~~~~~~~~~---------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-----~~f~~~~~~~~~~~~~ 208 (232)
|++.++.+... ....++....++|+|||.++.+..... ...+.|.+.+. .+-+++-+.....+++
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~-~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~~D 375 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL-MTSDLFQKIIADAAIDAGRDVQFIEQFRQAAD 375 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc-CCHHHHHHHHHHHHHHcCCeEEEEEEcCCCCC
Confidence 99877765332 345556677889999999998654443 23455655442 2345555544433333
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.32 E-value=2.8e-11 Score=98.93 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=81.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..+++.++ +++++|.++. +..+..+...... .+.+...++..... ...+.||
T Consensus 46 ~~~~~--~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~fD 116 (233)
T PRK05134 46 GLFGK--RVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL----KIDYRQTTAEELAA--EHPGQFD 116 (233)
T ss_pred CCCCC--eEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC----ceEEEecCHHHhhh--hcCCCcc
Confidence 44667 999999999999998888877 8999999984 5555555544331 23454444433221 1236799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+|+++.++.+..+...+++.+.+.|+|||.+++....+
T Consensus 117 ~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred EEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 99999999888889999999999999999999876543
No 66
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.32 E-value=6e-12 Score=98.50 Aligned_cols=120 Identities=21% Similarity=0.277 Sum_probs=80.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
++||+|||.|.++..+|... .+++++|+++ ++..+++.... ..+|.+...++.... ..++||+|+++.+
T Consensus 46 ~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~~----P~~~FDLIV~SEV 115 (201)
T PF05401_consen 46 RALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAG-----LPHVEWIQADVPEFW----PEGRFDLIVLSEV 115 (201)
T ss_dssp EEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT-------SS-EEEEEEES-
T ss_pred eeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCCC----CCCCeeEEEEehH
Confidence 89999999999999999886 4999999998 45555543321 245788888876554 2568999999999
Q ss_pred CCCcc---cHHHHHHHHHHhhCCCcEEEEEEeecC--------hhHHHHHHHHHhcCc-eEEEe
Q 026858 149 VYIEE---SAAQLVRAMEALVADDGVVLLGYQLRS--------PEAHKLFWEMCAEVF-LIEKV 200 (232)
Q Consensus 149 ~~~~~---~~~~~l~~l~~~l~pgG~l~i~~~~r~--------~~~~~~~~~~~~~~f-~~~~~ 200 (232)
+|+.. ++..++..+...|+|||.+++... |+ +...+...+++.+-+ +++.+
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~-rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~ 178 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHA-RDANCRRWGHAAGAETVLEMLQEHLTEVERV 178 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE--HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCcccccCcccchHHHHHHHHHHhhheeEE
Confidence 98654 467789999999999999999763 32 122455556666544 34443
No 67
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.32 E-value=4.6e-11 Score=95.93 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=72.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||+|||+|..+..+++. + ..+|+++|+++ ++..+++|+..++ ...++.+...|...... ..++
T Consensus 70 ~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~~---~~~~ 142 (205)
T PRK13944 70 PRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGLE---KHAP 142 (205)
T ss_pred CCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCCc---cCCC
Confidence 34667 9999999999999888875 2 34899999998 4566777776654 33346667666544321 2357
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||.|++.....+ +.+.+.+.|+|||++++..
T Consensus 143 fD~Ii~~~~~~~------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 143 FDAIIVTAAAST------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccEEEEccCcch------hhHHHHHhcCcCcEEEEEE
Confidence 999998766542 3357889999999998765
No 68
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.32 E-value=1e-10 Score=85.65 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=73.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||+|||+|..+..+++. +..+++++|+++ ++..++++...+.. .++.+...+...... ....+||
T Consensus 18 ~~~~--~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~D 90 (124)
T TIGR02469 18 RPGD--VLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV---SNIVIVEGDAPEALE--DSLPEPD 90 (124)
T ss_pred CCCC--EEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC---CceEEEeccccccCh--hhcCCCC
Confidence 3556 9999999999999999876 334899999998 46667776665531 134555544332111 1235799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.|++.... .....+++.+.+.|+|||.+++..
T Consensus 91 ~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 91 RVFIGGSG---GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEEECCcc---hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 99986543 345789999999999999999864
No 69
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.31 E-value=2.6e-10 Score=99.50 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=94.6
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhc
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
+.+..+.+.+..... ++. +|||+|||+|.+++.+++. +..+++++|+|+ +++.+++|.+.+
T Consensus 236 peTE~LVe~aL~~l~---------------~~~--rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~ 298 (423)
T PRK14966 236 PETEHLVEAVLARLP---------------ENG--RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL 298 (423)
T ss_pred ccHHHHHHHhhhccC---------------CCC--EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 556677777765443 445 8999999999999988865 334999999998 577888888766
Q ss_pred CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc-------------------------cHHHHHHHHHHhhC
Q 026858 113 KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE-------------------------SAAQLVRAMEALVA 167 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~ 167 (232)
. .++.+...|+..... + ..++||+|+++++..... ....+++.+.+.|+
T Consensus 299 g----~rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk 372 (423)
T PRK14966 299 G----ARVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA 372 (423)
T ss_pred C----CcEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC
Confidence 4 246777777744321 1 134799999987653211 14467777888999
Q ss_pred CCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 168 DDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 168 pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
|||.+++...... .+...+.+. .+|...++
T Consensus 373 pgG~lilEiG~~Q---~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 373 EGGFLLLEHGFDQ---GAAVRGVLAENGFSGVET 403 (423)
T ss_pred CCcEEEEEECccH---HHHHHHHHHHCCCcEEEE
Confidence 9999876543222 334555554 36754433
No 70
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.30 E-value=1.4e-10 Score=97.69 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=76.8
Q ss_pred cEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||+|||+|.+++.++... ..+++++|+|+ ++..+++|+..+. +..++.+...|+.... ...+||+|++++
T Consensus 117 ~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~~~----~~~~fDlIvsNP 190 (284)
T TIGR00536 117 HILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSNLFEPL----AGQKIDIIVSNP 190 (284)
T ss_pred EEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhccC----cCCCccEEEECC
Confidence 89999999999999998763 23999999998 5788888888775 3345788887775432 123799999976
Q ss_pred cCCCcc-------------------------cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 148 VVYIEE-------------------------SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 148 ~~~~~~-------------------------~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+..... ....++..+.+.|+|||.+++-..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 543221 355678888899999999887653
No 71
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.30 E-value=1.6e-10 Score=93.18 Aligned_cols=137 Identities=13% Similarity=0.016 Sum_probs=89.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhc-CC--------CCCCceEEEEeecCCCcccc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRN-KP--------VLNKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~-~~--------~~~~~i~~~~~d~~~~~~~~ 134 (232)
++. +|||+|||.|..++.+|.+|. +|+++|+|+. ++.++...... .. .-..++.+...|+.....
T Consensus 34 ~~~--rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-- 108 (213)
T TIGR03840 34 AGA--RVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA-- 108 (213)
T ss_pred CCC--eEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc--
Confidence 456 999999999999999999999 9999999994 55432211100 00 012345666666544331
Q ss_pred cCCCCccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeec------Ch---hHHHHHHHHHhcCceEEEecCC
Q 026858 135 ALKPPFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLR------SP---EAHKLFWEMCAEVFLIEKVPHE 203 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r------~~---~~~~~~~~~~~~~f~~~~~~~~ 203 (232)
...+.||.|+-..++. ..+.....++.+.++|+|||++++..... .+ .....+.+.+...|.++.+...
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~~ 188 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLESR 188 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEeec
Confidence 0124699999766553 45677889999999999999866653321 11 2345566666667888777655
Q ss_pred CCC
Q 026858 204 DLH 206 (232)
Q Consensus 204 ~~~ 206 (232)
..+
T Consensus 189 ~~~ 191 (213)
T TIGR03840 189 DVL 191 (213)
T ss_pred ccc
Confidence 444
No 72
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.30 E-value=9.1e-11 Score=94.68 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=79.3
Q ss_pred CcEEEeCccccHHHHHHHHh-CC------CcEEEEcchhHH-HHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 69 RRAIELGAGCGAAGMAFYLL-GL------ADIVLTDISPVM-PALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~-~~------~~v~~~D~s~~~-~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
+++||++||||-+++.+.+. +. ++|+..|+|+-| ....+..++....-..++.+...| .+.+++.+..|
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d---AE~LpFdd~s~ 178 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD---AEDLPFDDDSF 178 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC---cccCCCCCCcc
Confidence 39999999999999888765 22 599999999954 333333333221111224444443 34455566799
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|...++..+.+..+++..+++.+|+|||||++++.....
T Consensus 179 D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred eeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 999999999999999999999999999999999876444
No 73
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.30 E-value=2.5e-10 Score=92.40 Aligned_cols=135 Identities=15% Similarity=0.060 Sum_probs=88.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcC---------CCCCCceEEEEeecCCCcccc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNK---------PVLNKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~---------~~~~~~i~~~~~d~~~~~~~~ 134 (232)
++. +|||+|||.|..++.+|..|+ +|+++|+|+ +++.+........ .....++.+...|+.....
T Consensus 37 ~~~--rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~-- 111 (218)
T PRK13255 37 AGS--RVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA-- 111 (218)
T ss_pred CCC--eEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc--
Confidence 456 999999999999999999999 999999998 3554322110000 0012345666665544321
Q ss_pred cCCCCccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeecC------h---hHHHHHHHHHhcCceEEEecCC
Q 026858 135 ALKPPFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLRS------P---EAHKLFWEMCAEVFLIEKVPHE 203 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~------~---~~~~~~~~~~~~~f~~~~~~~~ 203 (232)
...+.||.|+-..++. ..+.....++.+.++|+|||++++...... + -..+.+.+.+...|.++.+...
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~ 191 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQ 191 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeec
Confidence 1124799999766553 556788999999999999997555322111 1 2355666666656888777654
Q ss_pred C
Q 026858 204 D 204 (232)
Q Consensus 204 ~ 204 (232)
.
T Consensus 192 ~ 192 (218)
T PRK13255 192 D 192 (218)
T ss_pred c
Confidence 4
No 74
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=7.6e-11 Score=100.24 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=84.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||+|||+|.+++.++.. +..+++++|+|+ ++..+++|++.++ +..++.+...|+.... ..++||+|++++
T Consensus 136 ~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~~l----~~~~fDlIvsNP 209 (307)
T PRK11805 136 RILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFAAL----PGRRYDLIVSNP 209 (307)
T ss_pred EEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhhhC----CCCCccEEEECC
Confidence 8999999999999999876 334999999998 5788888888775 3345777777764322 124799999986
Q ss_pred cCCCcc-------------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEe
Q 026858 148 VVYIEE-------------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKV 200 (232)
Q Consensus 148 ~~~~~~-------------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~ 200 (232)
+..... ....+++.+.+.|+|||.+++-.. .. ...+.+.+.. +|.+...
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g-~~---~~~~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG-NS---RVHLEEAYPDVPFTWLEF 284 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC-cC---HHHHHHHHhhCCCEEEEe
Confidence 643211 135678889999999999988542 22 2235554443 5555444
No 75
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.29 E-value=8.7e-12 Score=88.74 Aligned_cols=93 Identities=23% Similarity=0.368 Sum_probs=67.3
Q ss_pred EEEeCccccHHHHHHHHh---C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 71 AIELGAGCGAAGMAFYLL---G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 71 VLElGcGtG~~s~~la~~---~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
|||+|||+|..+..+++. + ..+++++|+|+ ++..++++...... ++.+...|+.+. +...++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~----~~~~~~~D~~~l---~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP----KVRFVQADARDL---PFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT----TSEEEESCTTCH---HHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC----ceEEEECCHhHC---cccCCCeeEEEE
Confidence 799999999999888876 3 14999999999 46666666554332 467888877553 234568999999
Q ss_pred ccc-C--CCcccHHHHHHHHHHhhCCCc
Q 026858 146 ADV-V--YIEESAAQLVRAMEALVADDG 170 (232)
Q Consensus 146 ~~~-~--~~~~~~~~~l~~l~~~l~pgG 170 (232)
+.. + .+.+.+..+++.+.++++|||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 544 4 355689999999999999997
No 76
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.28 E-value=1.6e-10 Score=92.15 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=92.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.+. +|||+|||+|.+++.++..++.+++++|.++ ++..+++|++.++. .++.+...|+..... ....+||+|
T Consensus 53 ~~~--~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~---~~v~~~~~D~~~~l~--~~~~~fDlV 125 (199)
T PRK10909 53 VDA--RCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA---GNARVVNTNALSFLA--QPGTPHNVV 125 (199)
T ss_pred CCC--EEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEEchHHHHHh--hcCCCceEE
Confidence 456 9999999999999876555666999999998 57788888887752 246777766543221 123469999
Q ss_pred EEcccCCCcccHHHHHHHHHHh--hCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 144 IAADVVYIEESAAQLVRAMEAL--VADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~--l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
++.++ |.....+.+++.+... ++|++.+++...... .+.. ...+|...+.. .+....+..+++
T Consensus 126 ~~DPP-y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~-----~~~~-~~~~~~~~~~k--------~yG~s~~~~~~~ 190 (199)
T PRK10909 126 FVDPP-FRKGLLEETINLLEDNGWLADEALIYVESEVEN-----GLPT-VPANWQLHREK--------VAGQVAYRLYIR 190 (199)
T ss_pred EECCC-CCCChHHHHHHHHHHCCCcCCCcEEEEEecCCC-----Cccc-CCCccEEEEEe--------cCCCEEEEEEEE
Confidence 98776 5555667777777764 789898887764332 1111 22345544433 344555555555
Q ss_pred cCcchhh
Q 026858 222 KKKEEEE 228 (232)
Q Consensus 222 ~~~~~~~ 228 (232)
..+++++
T Consensus 191 ~~~~~~~ 197 (199)
T PRK10909 191 EAQGESD 197 (199)
T ss_pred CCCCCCc
Confidence 5555543
No 77
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.27 E-value=2e-10 Score=96.10 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=93.0
Q ss_pred echHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHh
Q 026858 34 WPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 34 W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
.+.+..+.+++..... ..++. +|||+|||+|..++.++... ..+++++|+++ ++..++.|..
T Consensus 90 r~~te~l~~~~~~~~~-------------~~~~~--~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~- 153 (275)
T PRK09328 90 RPETEELVEWALEALL-------------LKEPL--RVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK- 153 (275)
T ss_pred CCCcHHHHHHHHHhcc-------------ccCCC--EEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-
Confidence 3556677777764433 33556 89999999999999998763 34999999998 5677777776
Q ss_pred cCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc--------------------------cHHHHHHHHHHh
Q 026858 112 NKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE--------------------------SAAQLVRAMEAL 165 (232)
Q Consensus 112 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~--------------------------~~~~~l~~l~~~ 165 (232)
+. ...++.+...|+.... ..++||+|+++++..... ....+++.+.++
T Consensus 154 ~~--~~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~ 227 (275)
T PRK09328 154 HG--LGARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY 227 (275)
T ss_pred hC--CCCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence 21 2345677777764332 136899999977653221 235677888899
Q ss_pred hCCCcEEEEEEeecChhHHHHHHHHHh-cCce
Q 026858 166 VADDGVVLLGYQLRSPEAHKLFWEMCA-EVFL 196 (232)
Q Consensus 166 l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~ 196 (232)
|+|||.+++...... .+.+.+.+. .+|.
T Consensus 228 Lk~gG~l~~e~g~~~---~~~~~~~l~~~gf~ 256 (275)
T PRK09328 228 LKPGGWLLLEIGYDQ---GEAVRALLAAAGFA 256 (275)
T ss_pred cccCCEEEEEECchH---HHHHHHHHHhCCCc
Confidence 999999998553222 234555554 3675
No 78
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.27 E-value=8.6e-11 Score=95.84 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=74.9
Q ss_pred cEEEeCccccHHHHHHHHhC-CCcEEEEcchhHH-HHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLG-LADIVLTDISPVM-PALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~~-~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||+|..+..+++.+ ..+++++|+++.+ ..++.... .++.+...|..... ..+++||+|+++.
T Consensus 37 ~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~---~~~~~fD~vi~~~ 106 (240)
T TIGR02072 37 SVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLP---LEDSSFDLIVSNL 106 (240)
T ss_pred eEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCC---CCCCceeEEEEhh
Confidence 89999999999998888773 3378999999843 33333221 13456666654432 2346799999999
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++++..+...++..+.++|+|||.+++...
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999888999999999999999999998764
No 79
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.27 E-value=7.7e-11 Score=93.84 Aligned_cols=124 Identities=12% Similarity=0.069 Sum_probs=84.1
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||+|..+..+|+. +..+++++|+++ ++..+.+++...+ + .++.+...|+..........+.+|.|+++.
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~--l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG--L-KNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC--C-CCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 8999999999999988876 334999999998 4666666666543 2 246777776643221111234799999876
Q ss_pred cCCCccc--------HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc--CceEE
Q 026858 148 VVYIEES--------AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE--VFLIE 198 (232)
Q Consensus 148 ~~~~~~~--------~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~--~f~~~ 198 (232)
+..+.+. .+.+++.+.++|+|||.+++...... ..+.+.+.+.. .|...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~--~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP--LFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHhCCCeEec
Confidence 5433322 25789999999999999999875443 23444555543 35543
No 80
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.26 E-value=3.1e-10 Score=93.55 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=93.3
Q ss_pred eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHH
Q 026858 33 VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLK 110 (232)
Q Consensus 33 ~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~ 110 (232)
-++.+..+.+++.+... ..+. +|||+|||+|..+..++.. +..+++++|+++ ++..++.+..
T Consensus 69 p~~~~~~l~~~~l~~~~--------------~~~~--~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 69 PRPDTEELVEAALERLK--------------KGPL--RVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred CCCChHHHHHHHHHhcc--------------cCCC--eEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 34566666666665432 1334 8999999999999999876 333999999998 5677777777
Q ss_pred hcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCccc--------------------------HHHHHHHHHH
Q 026858 111 RNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEES--------------------------AAQLVRAMEA 164 (232)
Q Consensus 111 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~--------------------------~~~~l~~l~~ 164 (232)
.+.. .++.+...|+.... ..++||+|++++++..... ...+++.+.+
T Consensus 133 ~~~~---~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~ 205 (251)
T TIGR03534 133 RLGL---DNVTFLQSDWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR 205 (251)
T ss_pred HcCC---CeEEEEECchhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence 6542 23667776664422 2467999999877643211 2467889999
Q ss_pred hhCCCcEEEEEEeecChhHHHHHHHHHh-cCceE
Q 026858 165 LVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLI 197 (232)
Q Consensus 165 ~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~ 197 (232)
+|+|||.+++...... .+.+.+.+. .+|..
T Consensus 206 ~L~~gG~~~~~~~~~~---~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 206 LLKPGGWLLLEIGYDQ---GEAVRALFEAAGFAD 236 (251)
T ss_pred hcccCCEEEEEECccH---HHHHHHHHHhCCCCc
Confidence 9999999998754332 233444444 36643
No 81
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.26 E-value=1.4e-10 Score=98.78 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=80.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+.. +|||||||+|..++.+++. +..+++++|.+++++.+++++...+ +.+++.+...|..... .+.+|+|
T Consensus 149 ~~~--~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~-----~~~~D~v 219 (306)
T TIGR02716 149 GVK--KMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKG--VADRMRGIAVDIYKES-----YPEADAV 219 (306)
T ss_pred CCC--EEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCC--ccceEEEEecCccCCC-----CCCCCEE
Confidence 456 9999999999999988877 3238999999767777777777655 4456778877764322 1247999
Q ss_pred EEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVVYIEE--SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+++.++|... ....+++++++.|+|||++++.+.
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9988887543 346799999999999999999864
No 82
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.26 E-value=1.3e-10 Score=93.93 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=72.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCC--CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGL--ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~--~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||||||+|..+..+++... .+|+++|+++ ++..+++++..+. + .++.+...|...... ...+
T Consensus 75 ~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g--~-~~v~~~~~d~~~~~~---~~~~ 146 (215)
T TIGR00080 75 LKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG--L-DNVIVIVGDGTQGWE---PLAP 146 (215)
T ss_pred CCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC--C-CCeEEEECCcccCCc---ccCC
Confidence 44667 999999999999998887732 3699999998 4667777777664 2 346666666543321 2357
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||+|++..+.. .+...+.+.|+|||++++..
T Consensus 147 fD~Ii~~~~~~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 147 YDRIYVTAAGP------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCEEEEcCCcc------cccHHHHHhcCcCcEEEEEE
Confidence 99999875432 23456788999999998864
No 83
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.25 E-value=6.5e-10 Score=89.51 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=82.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-----ccC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-----NAL 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~ 136 (232)
.++. +|||||||||..+..+++. + ..+|+++|++++. .. ..+.+...|+...... ...
T Consensus 50 ~~~~--~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~---------~~----~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGM--TVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---------PI----VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCC--EEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc---------CC----CCcEEEecCCCChHHHHHHHHHhC
Confidence 3566 8999999999999988876 2 2489999998821 11 2257777777664311 112
Q ss_pred CCCccEEEEcccCCCccc-----------HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEe
Q 026858 137 KPPFDLVIAADVVYIEES-----------AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKV 200 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~-----------~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~ 200 (232)
.++||+|+++...+.... ...+++.+.++|+|||.+++..... .....++..+...|.-.++
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKV 187 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEE
Confidence 467999998664543221 2568899999999999999965333 2345667777777764444
No 84
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.25 E-value=2.5e-10 Score=98.17 Aligned_cols=108 Identities=11% Similarity=0.073 Sum_probs=80.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||+|||||.+.+.++..+. +++++|+++ ++..++.|+...+.. . +.+...|..+.. ...+.||+
T Consensus 181 ~~g~--~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~--~-i~~~~~D~~~l~---~~~~~~D~ 251 (329)
T TIGR01177 181 TEGD--RVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIE--D-FFVKRGDATKLP---LSSESVDA 251 (329)
T ss_pred CCcC--EEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCC--C-CeEEecchhcCC---cccCCCCE
Confidence 4667 899999999999988888787 999999998 567778887765522 2 455566554432 22468999
Q ss_pred EEEcccCCCc---------ccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 143 VIAADVVYIE---------ESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~~~~---------~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|++++++... .....+++.+.++|+|||++++..+...
T Consensus 252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 9997665311 1257889999999999999998876553
No 85
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.25 E-value=1.9e-10 Score=88.37 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=96.8
Q ss_pred cceeec---hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCC-cEEEEcchh-HHHH
Q 026858 30 GTSVWP---CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLA-DIVLTDISP-VMPA 104 (232)
Q Consensus 30 g~~~W~---~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~-~v~~~D~s~-~~~~ 104 (232)
.+-+|= +...+.+|+..+....+ ..-... +|||||||.|.+-..+++.+.. .++++|+|+ ++..
T Consensus 38 ~GEvWFg~~ae~riv~wl~d~~~~~r---------v~~~A~--~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 38 EGEVWFGEDAEERIVDWLKDLIVISR---------VSKQAD--RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL 106 (227)
T ss_pred ccceecCCcHHHHHHHHHHhhhhhhh---------hccccc--ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence 345563 34457788877654110 011222 8999999999999999998765 499999999 4555
Q ss_pred HHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCC----C----cccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 105 LKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVY----I----EESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 105 ~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~----~----~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++.-++++. +.+.|.|.++|..++.. ..++||+|+--..+- + ..-+.-.+..+.++|+|||+++|..
T Consensus 107 A~niAe~~~--~~n~I~f~q~DI~~~~~---~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 107 AQNIAERDG--FSNEIRFQQLDITDPDF---LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred HHHHHHhcC--CCcceeEEEeeccCCcc---cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 444444444 45568999999988743 456788887432221 1 1122445677899999999999976
Q ss_pred eecChhHHHHHHHHHhc-CceEE
Q 026858 177 QLRSPEAHKLFWEMCAE-VFLIE 198 (232)
Q Consensus 177 ~~r~~~~~~~~~~~~~~-~f~~~ 198 (232)
-+.. ..++-+...+ +|.+.
T Consensus 182 CN~T---~dELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 182 CNFT---KDELVEEFENFNFEYL 201 (227)
T ss_pred cCcc---HHHHHHHHhcCCeEEE
Confidence 6554 3344444443 56543
No 86
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.24 E-value=1.1e-10 Score=102.06 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=74.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|.++..+++. ++ +|+++|+|+. +..++++.. . . .+.+...|+.. ..++|
T Consensus 165 l~~g~--rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~--l--~v~~~~~D~~~------l~~~f 229 (383)
T PRK11705 165 LKPGM--RVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--G--L--PVEIRLQDYRD------LNGQF 229 (383)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--c--C--eEEEEECchhh------cCCCC
Confidence 34677 9999999999999988876 66 9999999984 455555442 1 1 24444444322 24679
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|.|++..++++. ...+.+++.+.++|+|||.+++..
T Consensus 230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999998887654 456889999999999999999864
No 87
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.24 E-value=3e-11 Score=101.81 Aligned_cols=104 Identities=13% Similarity=0.235 Sum_probs=84.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.+.++ .|||+|||||.+++..|+.|+.+|+++|-|++...+.+.+..|+ +...+++.+..+.... ++ .++.|+
T Consensus 58 lf~dK--~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~--~~~ii~vi~gkvEdi~-LP--~eKVDi 130 (346)
T KOG1499|consen 58 LFKDK--TVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNG--LEDVITVIKGKVEDIE-LP--VEKVDI 130 (346)
T ss_pred hcCCC--EEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcC--ccceEEEeecceEEEe-cC--ccceeE
Confidence 67999 99999999999999999999999999999998888888888887 4456777766655542 22 368999
Q ss_pred EEE---cccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 143 VIA---ADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 143 Ii~---~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
|++ ..+++....+...+-.=-+.|+|||.++
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 997 4555666778888888888999999854
No 88
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.23 E-value=1.4e-11 Score=97.88 Aligned_cols=128 Identities=23% Similarity=0.300 Sum_probs=87.1
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-c-cCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-N-ALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~-~~~~~fD~Ii~~~ 147 (232)
++||||||||+.+..+-..-. +++++|+|+.|...+.. +.. +..+-......+ + ....+||+|++.+
T Consensus 128 ~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~e--Kg~--------YD~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 128 RMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHE--KGL--------YDTLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred eeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHh--ccc--------hHHHHHHHHHHHhhhccCCcccchhhhh
Confidence 999999999999988876644 89999999943322221 111 000000000000 0 1245799999999
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEE-------------eecChhHHHHHHHHHhc-CceEEEecCCCCCCC
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGY-------------QLRSPEAHKLFWEMCAE-VFLIEKVPHEDLHPD 208 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~-------------~~r~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~ 208 (232)
++.+...++.++.....+|+|||.+.++. +.|+.....-....+.. +|.+..+.+..+...
T Consensus 197 Vl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 197 VLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred HHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 99989999999999999999999999862 23333334445556664 999998887766555
No 89
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.23 E-value=3.7e-10 Score=102.18 Aligned_cols=122 Identities=17% Similarity=0.295 Sum_probs=83.1
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||+|||+|.+++.++.. +..+++++|+|+ ++..++.|+..++ +..++.+...|+.... ..++||+|++++
T Consensus 141 ~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~~~----~~~~fDlIvsNP 214 (506)
T PRK01544 141 NILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFENI----EKQKFDFIVSNP 214 (506)
T ss_pred EEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--CccceeeeecchhhhC----cCCCccEEEECC
Confidence 8999999999999988765 334999999998 6778888887765 3345677777654321 134799999977
Q ss_pred cCCCcc--------------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 148 VVYIEE--------------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 148 ~~~~~~--------------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
+..... ....+++.+.++|+|||.+++...... .+...+.+. .+|....+
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q---~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQ---EEAVTQIFLDHGYNIESV 291 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCch---HHHHHHHHHhcCCCceEE
Confidence 653211 134467788889999999987543222 334444444 36754443
No 90
>PTZ00146 fibrillarin; Provisional
Probab=99.23 E-value=2.5e-09 Score=89.34 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=92.5
Q ss_pred ccceeechHHH-HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhH-HHH
Q 026858 29 VGTSVWPCSLV-LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPV-MPA 104 (232)
Q Consensus 29 ~g~~~W~~~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~-~~~ 104 (232)
.-.|+|.--.- |+.-+..-.. .+...++. +|||||||+|..+..++.. + ..+|+++|+++. ++.
T Consensus 105 ~eyR~w~p~rSKlaa~i~~g~~----------~l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~d 172 (293)
T PTZ00146 105 IEYRVWNPFRSKLAAAIIGGVA----------NIPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRD 172 (293)
T ss_pred ceeeeeCCcccHHHHHHHCCcc----------eeccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHH
Confidence 34789974332 5544433322 11145777 9999999999999999987 2 358999999973 333
Q ss_pred HHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC----
Q 026858 105 LKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS---- 180 (232)
Q Consensus 105 ~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~---- 180 (232)
+....... .++.+...|...........+.+|+|++... .+.....++.++.++|||||.+++..+.+.
T Consensus 173 Ll~~ak~r-----~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g 245 (293)
T PTZ00146 173 LTNMAKKR-----PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCIDST 245 (293)
T ss_pred HHHHhhhc-----CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccccccC
Confidence 33222211 1235555554433212222357999997542 345556677889999999999999644332
Q ss_pred hhHHHHH---HHHHh-cCceEEEec
Q 026858 181 PEAHKLF---WEMCA-EVFLIEKVP 201 (232)
Q Consensus 181 ~~~~~~~---~~~~~-~~f~~~~~~ 201 (232)
+...+.| .+.++ .+|+..+..
T Consensus 246 ~~pe~~f~~ev~~L~~~GF~~~e~v 270 (293)
T PTZ00146 246 AKPEVVFASEVQKLKKEGLKPKEQL 270 (293)
T ss_pred CCHHHHHHHHHHHHHHcCCceEEEE
Confidence 1112222 23444 478765554
No 91
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.23 E-value=3e-10 Score=91.72 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=79.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCC--CcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGL--ADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~--~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..+++... .+++++|+++. +..++.+.. ...++.+...+..... ...+.||
T Consensus 39 ~~~--~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~---~~~~~~D 108 (223)
T TIGR01934 39 KGQ--KVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-----LPLNIEFIQADAEALP---FEDNSFD 108 (223)
T ss_pred CCC--eEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-----cCCCceEEecchhcCC---CCCCcEE
Confidence 556 999999999999988887743 38999999984 455555443 1233566666554432 2245799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+|+++..+++..+...+++.+.+.|+|||++++....
T Consensus 109 ~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999988888889999999999999999999987643
No 92
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.23 E-value=1.7e-10 Score=93.57 Aligned_cols=107 Identities=18% Similarity=0.258 Sum_probs=80.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.+. +|||+|||+|.++..+++.+. +++++|.++ ++..++.+...+.. ..+.+...+...... ...++||+|
T Consensus 45 ~~~--~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~--~~~~~~D~i 116 (224)
T TIGR01983 45 FGL--RVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL---LKIEYRCTSVEDLAE--KGAKSFDVV 116 (224)
T ss_pred CCC--eEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhc--CCCCCccEE
Confidence 456 999999999999998888777 799999998 45566665554431 124555544432221 113579999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
++...+++..+...+++.+.+.|+|||.+++....+
T Consensus 117 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 117 TCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred EehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999888899999999999999999999876443
No 93
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=2.8e-10 Score=91.90 Aligned_cols=114 Identities=13% Similarity=0.199 Sum_probs=79.0
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhc
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
++..+...+.+... ..++. +|||||||+|..+..+++. + ..+|+++|+++ ++..+++++...
T Consensus 60 ~~p~~~~~~~~~l~-------------~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~ 124 (212)
T PRK13942 60 SAIHMVAIMCELLD-------------LKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL 124 (212)
T ss_pred CcHHHHHHHHHHcC-------------CCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 44555555655555 45677 9999999999999888876 3 24999999998 466777777665
Q ss_pred CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 113 KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+. .++.+...|...... ..++||+|++..... .....+.+.|+|||++++..
T Consensus 125 g~---~~v~~~~gd~~~~~~---~~~~fD~I~~~~~~~------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 125 GY---DNVEVIVGDGTLGYE---ENAPYDRIYVTAAGP------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CC---CCeEEEECCcccCCC---cCCCcCEEEECCCcc------cchHHHHHhhCCCcEEEEEE
Confidence 42 246666666443321 235799999865432 23346778999999988854
No 94
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.22 E-value=5.9e-10 Score=96.88 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=109.9
Q ss_pred eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHh
Q 026858 33 VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 33 ~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
.|-.....-+++.... .|+ +||++.|-||..|+.+|..|+++||.+|+|. ++..+++|...
T Consensus 201 fFlDqR~~R~~l~~~~----------------~Gk--rvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L 262 (393)
T COG1092 201 FFLDQRDNRRALGELA----------------AGK--RVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL 262 (393)
T ss_pred eeHHhHHHHHHHhhhc----------------cCC--eEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh
Confidence 4555566666665532 478 9999999999999999999999999999998 69999999999
Q ss_pred cCCCCCCceEEEEeecCCCcccccCC-CCccEEEEcccCCCc---------ccHHHHHHHHHHhhCCCcEEEEEEeecCh
Q 026858 112 NKPVLNKSLKTSVLYWNNQDQINALK-PPFDLVIAADVVYIE---------ESAAQLVRAMEALVADDGVVLLGYQLRSP 181 (232)
Q Consensus 112 ~~~~~~~~i~~~~~d~~~~~~~~~~~-~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~ 181 (232)
|+.. ..++.+...|+-......... .+||+||+.++-+.. .+...++..+.++|+|||.++++...+..
T Consensus 263 Ng~~-~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 263 NGLD-GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred cCCC-ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 9833 133455555432221111122 379999997777632 25677888899999999999998766653
Q ss_pred hHHHHHHHHHh-----cCceEEEecCCCCCCCC
Q 026858 182 EAHKLFWEMCA-----EVFLIEKVPHEDLHPDY 209 (232)
Q Consensus 182 ~~~~~~~~~~~-----~~f~~~~~~~~~~~~~~ 209 (232)
..+.|.+.+. .+...+.+.....++++
T Consensus 342 -~~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~ 373 (393)
T COG1092 342 -SSDLFLEIIARAAAAAGRRAQEIEGEGQPPDH 373 (393)
T ss_pred -CHHHHHHHHHHHHHhcCCcEEEeeccCCCCCc
Confidence 2444544332 24566666656666665
No 95
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.22 E-value=7.3e-10 Score=86.10 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=89.4
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +++|+|||||.+++.++.. ...+++++|.++ ++...++|+++.+. +++.....+.-.. +...+ +|
T Consensus 32 ~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~~--L~~~~-~~ 103 (187)
T COG2242 32 PRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPEA--LPDLP-SP 103 (187)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchHh--hcCCC-CC
Confidence 56888 9999999999999999965 345999999998 68899999987762 3355555543222 22222 79
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-Cc-eEEEec
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VF-LIEKVP 201 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f-~~~~~~ 201 (232)
|.|+.... ..++.+++.+...|+|||++++....- +......+.+++ ++ ++..+.
T Consensus 104 daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 104 DAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred CEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEE
Confidence 99998754 678999999999999999999876433 223334444443 66 555543
No 96
>PRK05785 hypothetical protein; Provisional
Probab=99.22 E-value=4.5e-10 Score=91.53 Aligned_cols=85 Identities=12% Similarity=0.201 Sum_probs=65.4
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||||..+..+++. +. +++++|.|+. +..++.+ . .....+... .+..+++||+|+++.
T Consensus 54 ~VLDlGcGtG~~~~~l~~~~~~-~v~gvD~S~~Ml~~a~~~---~--------~~~~~d~~~---lp~~d~sfD~v~~~~ 118 (226)
T PRK05785 54 KVLDVAAGKGELSYHFKKVFKY-YVVALDYAENMLKMNLVA---D--------DKVVGSFEA---LPFRDKSFDVVMSSF 118 (226)
T ss_pred eEEEEcCCCCHHHHHHHHhcCC-EEEEECCCHHHHHHHHhc---c--------ceEEechhh---CCCCCCCEEEEEecC
Confidence 8999999999999998887 55 9999999994 4433321 1 122333322 233467899999999
Q ss_pred cCCCcccHHHHHHHHHHhhCCC
Q 026858 148 VVYIEESAAQLVRAMEALVADD 169 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pg 169 (232)
++++..+.+.++++++++|+|.
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCc
Confidence 9998899999999999999994
No 97
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.21 E-value=2.2e-10 Score=92.82 Aligned_cols=99 Identities=16% Similarity=0.235 Sum_probs=72.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|.++..++..+. +++++|+|+. +..++++...+. ...++.+...|+... .++||+|
T Consensus 55 ~~~--~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~------~~~fD~i 123 (219)
T TIGR02021 55 KGK--RVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSL------CGEFDIV 123 (219)
T ss_pred CCC--EEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhC------CCCcCEE
Confidence 456 999999999999999988776 9999999984 556666555443 223466666655432 2679999
Q ss_pred EEcccCCCc--ccHHHHHHHHHHhhCCCcEEEE
Q 026858 144 IAADVVYIE--ESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 144 i~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i 174 (232)
++.+++++. .....++..+.+++++++.+.+
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 998887543 4577888999998887655544
No 98
>PRK06922 hypothetical protein; Provisional
Probab=99.20 E-value=1.5e-10 Score=105.47 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=75.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..+++. +..+++++|+|+. +..++.+....+ .++.+...|..+... ...+++||+
T Consensus 418 ~g~--rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g----~~ie~I~gDa~dLp~-~fedeSFDv 490 (677)
T PRK06922 418 KGD--TIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG----RSWNVIKGDAINLSS-SFEKESVDT 490 (677)
T ss_pred CCC--EEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CCeEEEEcchHhCcc-ccCCCCEEE
Confidence 566 9999999999998888764 3349999999994 556655543322 234555555433211 123467999
Q ss_pred EEEcccCCC-------------cccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 143 VIAADVVYI-------------EESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 143 Ii~~~~~~~-------------~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+++.++++ ......+++.+.++|+|||.+++.+.
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999877753 24678899999999999999999864
No 99
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.7e-09 Score=82.82 Aligned_cols=76 Identities=24% Similarity=0.345 Sum_probs=62.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
...++ +|+|+|||||.+++.++..|+.+|+++|+++ +++.++.|..+. ...+.+...|+.+. .+.+|
T Consensus 43 ~l~g~--~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~------~~~~d 110 (198)
T COG2263 43 DLEGK--TVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDF------RGKFD 110 (198)
T ss_pred CcCCC--EEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhc------CCccc
Confidence 45777 8999999999999999999988999999998 578888888773 34567777766443 46899
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
.++.++++.
T Consensus 111 tvimNPPFG 119 (198)
T COG2263 111 TVIMNPPFG 119 (198)
T ss_pred eEEECCCCc
Confidence 999999885
No 100
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.20 E-value=1.2e-10 Score=91.97 Aligned_cols=99 Identities=21% Similarity=0.173 Sum_probs=76.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|.|||||+|..+-.+++. +...++|+|.|+.|...++... .+..+...|...-.. ....|+++++.+
T Consensus 33 ~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-------p~~~f~~aDl~~w~p----~~~~dllfaNAv 101 (257)
T COG4106 33 RVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-------PDATFEEADLRTWKP----EQPTDLLFANAV 101 (257)
T ss_pred eeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------CCCceecccHhhcCC----CCccchhhhhhh
Confidence 8999999999999988877 4449999999995443333221 123666665544331 346899999999
Q ss_pred CCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 149 VYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+++-.+...++..+...|.|||.+.+-.+..
T Consensus 102 lqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 102 LQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 9999999999999999999999999876533
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.19 E-value=3.8e-09 Score=84.19 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=83.6
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||+|||+|.+++.+++. +..+++++|.++ ++..+++|+..+.. .++.+...|.... .......+|
T Consensus 39 ~~~~--~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~---~~v~~~~~d~~~~--~~~~~~~~d 111 (196)
T PRK07402 39 EPDS--VLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV---KNVEVIEGSAPEC--LAQLAPAPD 111 (196)
T ss_pred CCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCeEEEECchHHH--HhhCCCCCC
Confidence 3567 9999999999999988865 334999999998 56777788776542 2356666554321 111223467
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh-hHHHHHHHHHh-cCceEEEec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP-EAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~-~~~~~~~~~~~-~~f~~~~~~ 201 (232)
.++... ...+..+++.+.++|+|||++++....... ......++.+. .++++..+.
T Consensus 112 ~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 112 RVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred EEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 766532 346788999999999999999988754431 11223333333 367766654
No 102
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.19 E-value=3e-10 Score=95.06 Aligned_cols=180 Identities=17% Similarity=0.130 Sum_probs=108.3
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.+.++-+|-.+.|.-..| -.||. .......-+|+.+.. .++ +||++.|-||..|+.++.
T Consensus 85 ~~~v~E~gl~f~v~l~~g-qktGl--FlDqR~nR~~v~~~~----------------~gk--rvLnlFsYTGgfsv~Aa~ 143 (286)
T PF10672_consen 85 FFTVEENGLKFRVDLTDG-QKTGL--FLDQRENRKWVRKYA----------------KGK--RVLNLFSYTGGFSVAAAA 143 (286)
T ss_dssp EEEEEETTEEEEEESSSS-SSTSS---GGGHHHHHHHHHHC----------------TTC--EEEEET-TTTHHHHHHHH
T ss_pred ceEEEECCEEEEEEcCCC-CcceE--cHHHHhhHHHHHHHc----------------CCC--ceEEecCCCCHHHHHHHH
Confidence 344555555555554444 44553 233344445665543 457 999999999999999999
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc------ccHHHHHH
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE------ESAAQLVR 160 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~------~~~~~~l~ 160 (232)
.|+.+|+.+|.|. ++..+++|...|+.. ..++.+...|+-.....-...++||+||+.++.+.. .+...++.
T Consensus 144 gGA~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~ 222 (286)
T PF10672_consen 144 GGAKEVVSVDSSKRALEWAKENAALNGLD-LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLR 222 (286)
T ss_dssp TTESEEEEEES-HHHHHHHHHHHHHTT-C-CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 9998999999998 689999999999743 245677777653322111123589999997776532 25677888
Q ss_pred HHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEecCCCCCCCCC
Q 026858 161 AMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVPHEDLHPDYG 210 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~ 210 (232)
.+.++++|||.++++..... -..+.|.+.+.. .-+++-+.+...+++|.
T Consensus 223 ~a~~ll~~gG~l~~~scs~~-i~~~~l~~~~~~~a~~~~~~~~~~~p~df~ 272 (286)
T PF10672_consen 223 RAMKLLKPGGLLLTCSCSHH-ISPDFLLEAVAEAAREVEFIERLGQPPDFP 272 (286)
T ss_dssp HHHHTEEEEEEEEEEE--TT-S-HHHHHHHHHHHHHHCEEEEEEE------
T ss_pred HHHHhcCCCCEEEEEcCCcc-cCHHHHHHHHHHhCccceEeeeeccccccc
Confidence 88899999999988776555 334556664442 23333334444455554
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.18 E-value=8e-10 Score=89.12 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=71.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||+|||+|..+..+++... +++++|.++. +..+++++.... + .++.+...|...... ..++||
T Consensus 76 ~~~~~--~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~~---~~~~fD 146 (212)
T PRK00312 76 LKPGD--RVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLG--L-HNVSVRHGDGWKGWP---AYAPFD 146 (212)
T ss_pred CCCCC--EEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCC--C-CceEEEECCcccCCC---cCCCcC
Confidence 44667 999999999999988887754 8999999984 566677766553 2 125666665433211 235799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|++...+. .+.+.+.+.|+|||++++...
T Consensus 147 ~I~~~~~~~------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 147 RILVTAAAP------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEEccCch------hhhHHHHHhcCCCcEEEEEEc
Confidence 999875443 234667899999999998764
No 104
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.18 E-value=9.9e-11 Score=93.78 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=87.9
Q ss_pred cEEEeCccccHHHHHHHHh----CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCc-ccccCCCCccEE
Q 026858 70 RAIELGAGCGAAGMAFYLL----GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQD-QINALKPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~----~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~fD~I 143 (232)
+|||+|||.|.+...+.+. +. .+.+.|.|+ ++.....+...+. .++.....|...+. ..+...+++|+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l-~v~acDfsp~Ai~~vk~~~~~~e----~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRL-KVYACDFSPRAIELVKKSSGYDE----SRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCe-EEEEcCCChHHHHHHHhccccch----hhhcccceeccchhccCCCCcCccceE
Confidence 7999999999999988775 24 899999999 5666666554443 23344455555544 223345789999
Q ss_pred EEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHH
Q 026858 144 IAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWE 189 (232)
Q Consensus 144 i~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~ 189 (232)
++..++. +++.+..++.++.++|||||.+++.++.++..+...|.+
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~ 196 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKK 196 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccC
Confidence 9988885 678899999999999999999999999998776666663
No 105
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=2.7e-10 Score=102.62 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=75.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+++ +|||||||+|..+..+++.+. +++++|+++. +...+ ..+. ...++.+...|..... .+...++||+|
T Consensus 37 ~~~--~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~---~~~~--~~~~i~~~~~d~~~~~-~~~~~~~fD~I 107 (475)
T PLN02336 37 EGK--SVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNE---SING--HYKNVKFMCADVTSPD-LNISDGSVDLI 107 (475)
T ss_pred CCC--EEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHH---HHhc--cCCceEEEEecccccc-cCCCCCCEEEE
Confidence 456 899999999999999998765 9999999984 33222 2222 1234677777765322 12234689999
Q ss_pred EEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEE
Q 026858 144 IAADVVYIEES--AAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 144 i~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++..++++..+ ...+++.+.++|+|||++++.+
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 99998876544 6889999999999999998863
No 106
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.17 E-value=3.6e-09 Score=83.78 Aligned_cols=117 Identities=10% Similarity=0.115 Sum_probs=75.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-----c
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-----A 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-----~ 135 (232)
..++. +|||+|||+|.++..++.. +..+++++|+++.+ .. ..+.+...|+.+..... .
T Consensus 30 i~~g~--~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~----~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 30 IKPGD--TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI----ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred cCCCC--EEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC----CCceEEEeeCCChhHHHHHHHHh
Confidence 34677 9999999999999888765 33479999999843 11 12456666665432100 1
Q ss_pred CCCCccEEEEcccCC----C-c------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCce
Q 026858 136 LKPPFDLVIAADVVY----I-E------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~----~-~------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~ 196 (232)
..++||+|++..+.+ + . .....++..+.++|+|||++++...... ....++..+...|.
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~--~~~~~l~~l~~~~~ 164 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE--EIDEYLNELRKLFE 164 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc--cHHHHHHHHHhhhc
Confidence 234799999854321 1 1 1236789999999999999998653322 23455665555453
No 107
>PLN03075 nicotianamine synthase; Provisional
Probab=99.17 E-value=4.6e-10 Score=94.05 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=77.0
Q ss_pred CCCCCcEEEeCccccH-HHHHHHH-h-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAGCGA-AGMAFYL-L-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~-~s~~la~-~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
+.+ +|+|||||+|- .++.++. . ...+++++|.++. ...++++... ...+..++.|...|..+... ..+.|
T Consensus 123 ~p~--~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-~~gL~~rV~F~~~Da~~~~~---~l~~F 196 (296)
T PLN03075 123 VPT--KVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-DPDLSKRMFFHTADVMDVTE---SLKEY 196 (296)
T ss_pred CCC--EEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-ccCccCCcEEEECchhhccc---ccCCc
Confidence 556 99999999764 4454543 3 3448999999995 5555555533 22356678999888765321 23579
Q ss_pred cEEEEcccCCC-cccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYI-EESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~-~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+|++...+|+ .++...+++.+.+.|+|||.+++..
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999844444 3789999999999999999999975
No 108
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.16 E-value=9.4e-10 Score=98.24 Aligned_cols=143 Identities=12% Similarity=0.092 Sum_probs=99.0
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCC
Q 026858 37 SLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPV 115 (232)
Q Consensus 37 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~ 115 (232)
+..|.+.+.+... ..++. +|||+|||+|.+++.+++.+. +++++|+|+ ++..++.|+..++.
T Consensus 282 ~e~l~~~vl~~l~-------------~~~~~--~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~- 344 (443)
T PRK13168 282 NQKMVARALEWLD-------------PQPGD--RVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGL- 344 (443)
T ss_pred HHHHHHHHHHHhc-------------CCCCC--EEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCC-
Confidence 4556666666554 34667 999999999999999998875 999999998 67788888887752
Q ss_pred CCCceEEEEeecCCCcc-cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcC
Q 026858 116 LNKSLKTSVLYWNNQDQ-INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEV 194 (232)
Q Consensus 116 ~~~~i~~~~~d~~~~~~-~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~ 194 (232)
.++.+...|+..... .....++||+|++.++-.. ....++.+.+ ++|++.+++++.... ....+..+.+.+
T Consensus 345 --~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~t--laRDl~~L~~~g 416 (443)
T PRK13168 345 --DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPAT--LARDAGVLVEAG 416 (443)
T ss_pred --CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChHH--hhccHHHHhhCC
Confidence 247888887754321 1112356999998655332 3456666666 589999999874433 123344444678
Q ss_pred ceEEEecCCC
Q 026858 195 FLIEKVPHED 204 (232)
Q Consensus 195 f~~~~~~~~~ 204 (232)
|+++++...+
T Consensus 417 Y~l~~i~~~D 426 (443)
T PRK13168 417 YRLKRAGMLD 426 (443)
T ss_pred cEEEEEEEec
Confidence 9998886554
No 109
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.16 E-value=1.8e-09 Score=86.66 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..++.. +..+++++|+|+ ++..++.+.. .+.+...+... +..+++||+
T Consensus 43 ~~~--~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------~~~~~~~d~~~----~~~~~sfD~ 108 (204)
T TIGR03587 43 KIA--SILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------NINIIQGSLFD----PFKDNFFDL 108 (204)
T ss_pred CCC--cEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------CCcEEEeeccC----CCCCCCEEE
Confidence 455 8999999999999888876 334999999999 4454444321 12445555443 123568999
Q ss_pred EEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+++.++++. ..+..+++.+.+++ ++.+++..
T Consensus 109 V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 109 VLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 9999998644 45677888888876 45666653
No 110
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.16 E-value=7.6e-11 Score=98.24 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=73.0
Q ss_pred CCcEEEeCccccH----HHHHHHHh-C-----CCcEEEEcchh-HHHHHHHHHH-----hcC------------------
Q 026858 68 RRRAIELGAGCGA----AGMAFYLL-G-----LADIVLTDISP-VMPALKHNLK-----RNK------------------ 113 (232)
Q Consensus 68 ~~~VLElGcGtG~----~s~~la~~-~-----~~~v~~~D~s~-~~~~~~~n~~-----~~~------------------ 113 (232)
+.+|+|+|||||. +++.++.. + ..+|+++|+|+ ++..+++..- .+.
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 3499999999996 44455443 1 13899999999 4555544320 000
Q ss_pred -CCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 114 -PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 114 -~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+...+.+...|...... ..++||+|+|.+++++. .....+++.++++|+|||.+++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~---~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESP---PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCC---ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0112356777777765432 24689999998888644 466789999999999999999875
No 111
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.15 E-value=1.7e-09 Score=92.06 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=67.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCC--CCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||||||+|.+++.+++.+. +|+++|+|+ ++..++++....... ....+.+...|+.. ..+.||
T Consensus 144 ~~~--~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~------l~~~fD 214 (315)
T PLN02585 144 AGV--TVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES------LSGKYD 214 (315)
T ss_pred CCC--EEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh------cCCCcC
Confidence 456 999999999999999999887 999999999 566666665443110 01234555554421 246899
Q ss_pred EEEEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEE--SAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|++.+++++.. ....+++.+.++ .++|. ++..
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~ 249 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISF 249 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEe
Confidence 999999875433 344566666654 45444 4443
No 112
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.4e-09 Score=82.32 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=104.8
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHh
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
+.++.|.+-+.+... .+.....+ -+||||||+|..+-++++. +...+.++|+|+ +++.....++.
T Consensus 23 EDTFlLlDaLekd~~----------eL~~~~~~--i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~ 90 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAA----------ELKGHNPE--ICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC 90 (209)
T ss_pred chhhHHHHHHHHHHH----------HHhhcCce--eEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh
Confidence 457788888876544 00011234 7999999999999888765 444899999999 57777777777
Q ss_pred cCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc---------------------cHHHHHHHHHHhhCCCc
Q 026858 112 NKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE---------------------SAAQLVRAMEALVADDG 170 (232)
Q Consensus 112 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~---------------------~~~~~l~~l~~~l~pgG 170 (232)
|... +...+.|...... .++-|+++.+++.-..+ ....++..+..+|+|.|
T Consensus 91 n~~~----~~~V~tdl~~~l~----~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~G 162 (209)
T KOG3191|consen 91 NRVH----IDVVRTDLLSGLR----NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRG 162 (209)
T ss_pred cCCc----cceeehhHHhhhc----cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCc
Confidence 7643 3555665544432 36789999877653211 25667777788889999
Q ss_pred EEEEEEeecChhHHHHHHHHHh-cCceEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 171 VVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 171 ~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
.+++....++. -+...+.++ ++|.+........ ..+...++++.+
T Consensus 163 v~Ylv~~~~N~--p~ei~k~l~~~g~~~~~~~~Rk~----~~E~l~ilkf~r 208 (209)
T KOG3191|consen 163 VFYLVALRANK--PKEILKILEKKGYGVRIAMQRKA----GGETLSILKFTR 208 (209)
T ss_pred eEEeeehhhcC--HHHHHHHHhhcccceeEEEEEec----CCceEEEEEEEe
Confidence 99999877763 234444555 4777665543331 233345555543
No 113
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.14 E-value=2.1e-10 Score=95.87 Aligned_cols=103 Identities=15% Similarity=0.232 Sum_probs=82.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++.++ .|||+|||+|++++++|+.|+++|++++.|++.+.+++-+..|. +..+|.+....+++.+ .+++.|+
T Consensus 175 DF~~k--iVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~--~~~rItVI~GKiEdie----LPEk~Dv 246 (517)
T KOG1500|consen 175 DFQDK--IVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNN--LADRITVIPGKIEDIE----LPEKVDV 246 (517)
T ss_pred ccCCc--EEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCC--ccceEEEccCcccccc----CchhccE
Confidence 78999 99999999999999999999999999999998888888777775 6778888888776655 3578999
Q ss_pred EEEcc---cCCCcccHHHHHHHHHHhhCCCcEEEE
Q 026858 143 VIAAD---VVYIEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 143 Ii~~~---~~~~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
||+-+ .+++...++..+. .++.|+|.|..+=
T Consensus 247 iISEPMG~mL~NERMLEsYl~-Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 247 IISEPMGYMLVNERMLESYLH-ARKWLKPNGKMFP 280 (517)
T ss_pred EEeccchhhhhhHHHHHHHHH-HHhhcCCCCcccC
Confidence 99733 2345555555543 4599999998664
No 114
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.14 E-value=7.9e-10 Score=77.23 Aligned_cols=101 Identities=23% Similarity=0.287 Sum_probs=74.7
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|+|+|||+|..+..++.....+++++|.++. +..+.+....+ ....+.+...++.+... ...++||+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPP--EADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhcc--ccCCceEEEEEccc
Confidence 58999999999998888754459999999984 44444322222 22345666666554432 12357999999998
Q ss_pred CCC-cccHHHHHHHHHHhhCCCcEEEEE
Q 026858 149 VYI-EESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 149 ~~~-~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
++. ......+++.+.+.++|+|.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 887 888999999999999999999876
No 115
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.13 E-value=6.4e-10 Score=88.15 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=75.1
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC-cc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP-FD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-fD 141 (232)
..+. +|||++||+|.+++.++..|+.+++++|.++ ++..+++|+..+. ...++.+...|............. ||
T Consensus 48 ~~g~--~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~--~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 48 IQGA--HLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK--SGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred cCCC--EEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC--CcccEEEEehhHHHHHHHhhccCCCce
Confidence 3567 9999999999999999999888999999998 5778888888876 334566666665332110011223 56
Q ss_pred EEEEcccCCCcccHHHHHHHHHH--hhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEA--LVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~--~l~pgG~l~i~~ 176 (232)
+|+ .++.|.......++..+.+ +++++|.+++-.
T Consensus 124 vv~-~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 124 VIY-LDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEE-ECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 666 5666666667777776655 567777666544
No 116
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.11 E-value=3.9e-09 Score=91.63 Aligned_cols=107 Identities=11% Similarity=0.005 Sum_probs=78.8
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
.+||||||+|..++.+|+. +...++|+|+++ ++..+.+++..++ + .++.+...|...... ...++++|.|+++.
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g--L-~NV~~i~~DA~~ll~-~~~~~s~D~I~lnF 200 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN--L-KNLLIINYDARLLLE-LLPSNSVEKIFVHF 200 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC--C-CcEEEEECCHHHhhh-hCCCCceeEEEEeC
Confidence 8999999999999999887 334999999998 5667777666654 2 236777766543221 12246899999876
Q ss_pred cCCCcccH------HHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 148 VVYIEESA------AQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 148 ~~~~~~~~------~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+.-|+... +.++..+.++|+|||.+.+.+....
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 65444332 6899999999999999999875443
No 117
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.10 E-value=7.8e-10 Score=90.03 Aligned_cols=96 Identities=23% Similarity=0.367 Sum_probs=68.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+. +|+++|.|+ ++..++++..... ...++.+...|+.. ..+.||+|
T Consensus 63 ~~~--~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~------~~~~fD~v 131 (230)
T PRK07580 63 TGL--RILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLES------LLGRFDTV 131 (230)
T ss_pred CCC--EEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCchh------ccCCcCEE
Confidence 456 899999999999999998887 799999998 4556666554433 22346666665321 24679999
Q ss_pred EEcccCCC--cccHHHHHHHHHHhhCCCcE
Q 026858 144 IAADVVYI--EESAAQLVRAMEALVADDGV 171 (232)
Q Consensus 144 i~~~~~~~--~~~~~~~l~~l~~~l~pgG~ 171 (232)
++..++++ ......+++.+.+.+++++.
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 99988854 34667778888887654443
No 118
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.09 E-value=6.1e-10 Score=87.05 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=72.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+++ +|||||||.|.+...+... ++ +..|+|+++. ...+... ++ +.+.+.|.+.... .+.+++||+|
T Consensus 13 pgs--rVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~--~v~~cv~-rG------v~Viq~Dld~gL~-~f~d~sFD~V 79 (193)
T PF07021_consen 13 PGS--RVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPD--NVAACVA-RG------VSVIQGDLDEGLA-DFPDQSFDYV 79 (193)
T ss_pred CCC--EEEecCCCchHHHHHHHHhcCC-eEEEEecCHH--HHHHHHH-cC------CCEEECCHHHhHh-hCCCCCccEE
Confidence 667 9999999999988777664 66 8999999983 2222222 22 2566777766542 2346789999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|++.++......+.+++++.|+ |...+++.++-.
T Consensus 80 IlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg 113 (193)
T PF07021_consen 80 ILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFG 113 (193)
T ss_pred ehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChH
Confidence 9999998777778887776554 667888876554
No 119
>PRK06202 hypothetical protein; Provisional
Probab=99.09 E-value=3e-09 Score=86.98 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=67.7
Q ss_pred cEEEeCccccHHHHHHHHh----C-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 70 RAIELGAGCGAAGMAFYLL----G-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~----~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+|||||||+|.++..++.. | ..+++++|+++. +..++.+...+ .+.+...+..... ..+++||+|
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~~~~~~l~---~~~~~fD~V 133 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP------GVTFRQAVSDELV---AEGERFDVV 133 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC------CCeEEEEeccccc---ccCCCccEE
Confidence 8999999999988887642 2 128999999994 44444432221 1233333332221 134689999
Q ss_pred EEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEES--AAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+++.++++..+ ...+++.+.++++ |.+++.+..+.
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 99999986655 4679999999988 66666665555
No 120
>PLN02672 methionine S-methyltransferase
Probab=99.08 E-value=4.4e-09 Score=101.40 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=98.6
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhc
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
+.+..|++.+...+. . .+++. +|||||||+|.+++.+++. +..+++++|+|+ ++..++.|+..|
T Consensus 100 peTE~lve~L~~~~~-~-----------~~~~~--~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n 165 (1082)
T PLN02672 100 DWSFTFYEGLNRHPD-S-----------IFRDK--TVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLN 165 (1082)
T ss_pred hhHHHHHHHHHhccc-c-----------cCCCC--EEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 566777777543221 0 23456 8999999999999999876 334999999999 588889999886
Q ss_pred CC-------------CCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc--------------------------
Q 026858 113 KP-------------VLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE-------------------------- 153 (232)
Q Consensus 113 ~~-------------~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~-------------------------- 153 (232)
.. ....++.+...|+..... ....+||+||++++.-...
T Consensus 166 ~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~--~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~A 243 (1082)
T PLN02672 166 ALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR--DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCA 243 (1082)
T ss_pred CcccccccccccccccccccEEEEECchhhhcc--ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCcccc
Confidence 42 123467888888754331 1123699999977642111
Q ss_pred ------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHH-HHHh-cCceEEEecCCC
Q 026858 154 ------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFW-EMCA-EVFLIEKVPHED 204 (232)
Q Consensus 154 ------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~-~~~~-~~f~~~~~~~~~ 204 (232)
....++....++|+|||.+++-.-.+.. +... +++. .+|...++...+
T Consensus 244 L~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~---~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 244 LQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPG---QAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH---HHHHHHHHHHCCCCeeEEeeeh
Confidence 1255677788899999998875533332 2333 2333 467766655443
No 121
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.08 E-value=3.5e-09 Score=83.91 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=82.6
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+.-|||||||||+.+..+...|. ..+++|+|+.|...+......+ .+...|.+... ++.++.||-+|+..
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~eg-------dlil~DMG~Gl--pfrpGtFDg~ISIS 120 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELEG-------DLILCDMGEGL--PFRPGTFDGVISIS 120 (270)
T ss_pred CcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhhc-------CeeeeecCCCC--CCCCCccceEEEee
Confidence 34899999999999999988886 9999999995433332222211 23444555443 44568899999866
Q ss_pred cCCCc-----------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCc
Q 026858 148 VVYIE-----------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVF 195 (232)
Q Consensus 148 ~~~~~-----------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f 195 (232)
.+.+. .-+..++..++.+|++|++.++-.+..+....+.+++... .+|
T Consensus 121 AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 121 AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred eeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 65321 1245568889999999999999888777666666666554 465
No 122
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.07 E-value=6.1e-09 Score=89.03 Aligned_cols=125 Identities=17% Similarity=0.128 Sum_probs=85.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..++.+++.+. +|+++|.++ +++.+++|++.++ + .++.+...|...... ...+.||+|
T Consensus 173 ~~~--~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~--l-~~v~~~~~D~~~~~~--~~~~~~D~V 244 (315)
T PRK03522 173 PPR--SMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELG--L-TNVQFQALDSTQFAT--AQGEVPDLV 244 (315)
T ss_pred CCC--EEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcC--C-CceEEEEcCHHHHHH--hcCCCCeEE
Confidence 456 899999999999999999875 999999998 6788888888776 3 346777777643221 123469999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~ 204 (232)
++.++-. .....+++.+.+ ++|++.+++++..... ...+.. + .+|+++.+.-..
T Consensus 245 v~dPPr~--G~~~~~~~~l~~-~~~~~ivyvsc~p~t~--~rd~~~-l-~~y~~~~~~~~D 298 (315)
T PRK03522 245 LVNPPRR--GIGKELCDYLSQ-MAPRFILYSSCNAQTM--AKDLAH-L-PGYRIERVQLFD 298 (315)
T ss_pred EECCCCC--CccHHHHHHHHH-cCCCeEEEEECCcccc--hhHHhh-c-cCcEEEEEEEec
Confidence 9876622 223444455444 6788888887755442 122222 2 578888876444
No 123
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=5.7e-09 Score=85.20 Aligned_cols=122 Identities=14% Similarity=0.178 Sum_probs=85.3
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc--cccCCCCccEEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ--INALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~fD~Ii~ 145 (232)
.+||+|||+|..++.++.. +..+++++|.|+ ++..+.+|++++. +.+.+.....+...... .+...+++|++++
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecccccccccccccccCceeEEec
Confidence 7999999999999888765 444999999999 5788889999887 55566666543333221 1223478999998
Q ss_pred cccCCCcc--------------------------cHHHHHHHHHHhhCCCcEEEEEEe--ecChhHHHHHHHHHhc
Q 026858 146 ADVVYIEE--------------------------SAAQLVRAMEALVADDGVVLLGYQ--LRSPEAHKLFWEMCAE 193 (232)
Q Consensus 146 ~~~~~~~~--------------------------~~~~~l~~l~~~l~pgG~l~i~~~--~r~~~~~~~~~~~~~~ 193 (232)
+++.-..+ .+-.+..-..+.|+|||.+++-.. .+++.....++....+
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~ 304 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKD 304 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchh
Confidence 77653222 244455667889999999999776 5555555555555443
No 124
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.06 E-value=6.9e-09 Score=90.68 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=87.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|.+++.++..+. +++++|+++ ++..++.|++.++. .++.+...|+..... ....+||+|
T Consensus 233 ~~~--~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~--~~~~~~D~v 304 (374)
T TIGR02085 233 PVT--QMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFAT--AQMSAPELV 304 (374)
T ss_pred CCC--EEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHH--hcCCCCCEE
Confidence 456 899999999999999998775 999999998 68888889888763 256777776643221 112459999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~ 204 (232)
++.++ +. .....+++.+.+ ++|++.+++++..... ...+..+ .+|+++.+.-..
T Consensus 305 i~DPP-r~-G~~~~~l~~l~~-~~p~~ivyvsc~p~Tl--aRDl~~L--~gy~l~~~~~~D 358 (374)
T TIGR02085 305 LVNPP-RR-GIGKELCDYLSQ-MAPKFILYSSCNAQTM--AKDIAEL--SGYQIERVQLFD 358 (374)
T ss_pred EECCC-CC-CCcHHHHHHHHh-cCCCeEEEEEeCHHHH--HHHHHHh--cCceEEEEEEec
Confidence 98666 42 444666666654 6899999988753331 2223323 679888876544
No 125
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=2.1e-08 Score=89.40 Aligned_cols=130 Identities=17% Similarity=0.140 Sum_probs=86.8
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-ccCCCC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NALKPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~ 139 (232)
.++. +|||+|||+|..+..++.. +.++++++|+++ .+..+++|+.+++.. ++.+...|....... ....++
T Consensus 251 ~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~---~v~~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 251 QPGE--VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK---SIKILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC---eEEEEeCChhhccccccccccc
Confidence 3567 9999999999999888875 234899999998 577888888877632 356666665433210 012357
Q ss_pred ccEEEEcccCCC-------cc---------------cHHHHHHHHHHhhCCCcEEEEEEeecCh-hHHHHHHHHHhc--C
Q 026858 140 FDLVIAADVVYI-------EE---------------SAAQLVRAMEALVADDGVVLLGYQLRSP-EAHKLFWEMCAE--V 194 (232)
Q Consensus 140 fD~Ii~~~~~~~-------~~---------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~-~~~~~~~~~~~~--~ 194 (232)
||.|++..+... ++ ....++.++.++|+|||++++++..-++ +........+++ +
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 999998544321 11 1357789999999999999887654443 223444444443 5
Q ss_pred ceEE
Q 026858 195 FLIE 198 (232)
Q Consensus 195 f~~~ 198 (232)
|...
T Consensus 406 ~~~~ 409 (434)
T PRK14901 406 WKLE 409 (434)
T ss_pred cEec
Confidence 6644
No 126
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.06 E-value=1.9e-08 Score=81.46 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=92.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHh-------cC--CCCCCceEEEEeecCCCcccc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKR-------NK--PVLNKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~-------~~--~~~~~~i~~~~~d~~~~~~~~ 134 (232)
++. +||..|||.|.-...+|.+|+ +|+++|+|+ ++....+.... +. ..-...+.+...|+-......
T Consensus 43 ~~~--rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSS--VCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCC--eEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 456 999999999999999999999 899999999 45544331100 00 001234666666654432111
Q ss_pred cCCCCccEEEEcccC--CCcccHHHHHHHHHHhhCCCcEEEEEEeecC--------hhHHHHHHHHHhcCceEEEecCC
Q 026858 135 ALKPPFDLVIAADVV--YIEESAAQLVRAMEALVADDGVVLLGYQLRS--------PEAHKLFWEMCAEVFLIEKVPHE 203 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~--~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~--------~~~~~~~~~~~~~~f~~~~~~~~ 203 (232)
...+.||.|+-..++ ..++.....++.+.++|+|||.+++...... .-..+.+.+.+...|.++.+...
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l~~~ 198 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELIDSK 198 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEeeec
Confidence 123579998865544 4778899999999999999999888643211 12356677777778888777643
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.05 E-value=3.2e-09 Score=82.64 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=62.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||||||+|.++..+++.+. +++++|+++ ++..++++... ..++.+...|+..... ....||.
T Consensus 12 ~~~~--~vLEiG~G~G~lt~~l~~~~~-~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~---~~~~~d~ 80 (169)
T smart00650 12 RPGD--TVLEIGPGKGALTEELLERAA-RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDL---PKLQPYK 80 (169)
T ss_pred CCcC--EEEEECCCccHHHHHHHhcCC-eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCc---cccCCCE
Confidence 3556 899999999999999998865 999999998 45555555432 1345666666654431 1236999
Q ss_pred EEEcccCCCcccHHHHHHHHHHh--hCCCcEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEAL--VADDGVVLLG 175 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~--l~pgG~l~i~ 175 (232)
|+++.+++. ...++..+.+. +.++|.+++-
T Consensus 81 vi~n~Py~~---~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 81 VVGNLPYNI---STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred EEECCCccc---HHHHHHHHHhcCCCcceEEEEEE
Confidence 998765542 12334333332 2356666553
No 128
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.04 E-value=2.4e-09 Score=90.99 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh---CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-C-C
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL---GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-K-P 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~---~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~-~ 138 (232)
++. +|||+|||+|..+..+++. +. +|+++|+|+ ++..+++++....+. -++.....|..+....... . .
T Consensus 63 ~~~--~iLELGcGtG~~t~~Ll~~l~~~~-~~~~iDiS~~mL~~a~~~l~~~~p~--~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 63 AGC--ELVELGSGSSRKTRLLLDALRQPA-RYVPIDISADALKESAAALAADYPQ--LEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred CCC--eEEecCCCcchhHHHHHHhhccCC-eEEEEECCHHHHHHHHHHHHhhCCC--ceEEEEEEcccchhhhhcccccC
Confidence 445 8999999999999888766 35 899999999 456666665543322 2345566666543221111 0 1
Q ss_pred CccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 139 PFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 139 ~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
...++++..+++ ...+...+++.++++|+|||.+++...
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 223444444554 445677899999999999999998654
No 129
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.04 E-value=3.7e-09 Score=88.55 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=64.4
Q ss_pred cEEEeCccccHHHHHHHHh-C---CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-G---LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~---~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|||+|||+|..+..++.. + ...++++|+|+. +..++++ . ..+.+...|..+. +..+++||+|+
T Consensus 88 ~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----~----~~~~~~~~d~~~l---p~~~~sfD~I~ 156 (272)
T PRK11088 88 ALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----Y----PQVTFCVASSHRL---PFADQSLDAII 156 (272)
T ss_pred eEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh----C----CCCeEEEeecccC---CCcCCceeEEE
Confidence 8999999999999888764 1 127999999984 4444332 1 1235666655432 22356899999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+... +..++++.++|+|||+++++.+...
T Consensus 157 ~~~~-------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 157 RIYA-------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred EecC-------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 8543 2245789999999999999876543
No 130
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.03 E-value=1.8e-09 Score=88.45 Aligned_cols=104 Identities=15% Similarity=0.170 Sum_probs=76.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c--ccCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I--NALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~--~~~~~ 138 (232)
+.+ +|||+|||+|..++.++.. +.++++++|+++ .+..+++|+..++ +..++.+...+...... + ....+
T Consensus 68 ~~~--~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 68 NAK--NTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred CCC--EEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 556 9999999999988877764 345999999998 5778888888776 44567777777654321 0 01135
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+||+|++.. .......++..+.++++|||.+++-
T Consensus 144 ~fD~VfiDa---~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 144 EFDFAFVDA---DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCEEEECC---CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 799999742 2245567889999999999998863
No 131
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5e-09 Score=83.13 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=73.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|..+-.+|+... +|+.+|..+. ...+++|+...+.. ++.+...|-..... ..++||
T Consensus 70 ~~~g~--~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~---nV~v~~gDG~~G~~---~~aPyD 140 (209)
T COG2518 70 LKPGD--RVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE---NVTVRHGDGSKGWP---EEAPYD 140 (209)
T ss_pred CCCCC--eEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC---ceEEEECCcccCCC---CCCCcC
Confidence 55777 999999999999999998865 9999999985 56777777766522 26777776555543 246799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.|++....-. .=+.+.+.|++||++++-.
T Consensus 141 ~I~Vtaaa~~------vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 141 RIIVTAAAPE------VPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred EEEEeeccCC------CCHHHHHhcccCCEEEEEE
Confidence 9998654431 2245678899999998854
No 132
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.01 E-value=1.4e-08 Score=90.44 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=87.1
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD 141 (232)
.++. +|||+|||+|.+++.+|+... +|+++|+++ ++..+++|+..++. .++.+...|+..... ......+||
T Consensus 291 ~~~~--~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~---~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 291 QGEE--LVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGI---ANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCC--EEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCC---CceEEEeCCHHHHHHHHHhcCCCCC
Confidence 3556 899999999999999998765 999999998 67888889887762 346777777643211 111134699
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHH-HHHHHHHhcCceEEEecCCC
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAH-KLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~-~~~~~~~~~~f~~~~~~~~~ 204 (232)
+|++.++-. .....+++.+.+ ++|++.+++++.. .+. ..+..+...+|.++.+.-.+
T Consensus 365 ~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~p---~tlard~~~l~~~gy~~~~~~~~D 422 (431)
T TIGR00479 365 VLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSCNP---ATLARDLEFLCKEGYGITWVQPVD 422 (431)
T ss_pred EEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCCH---HHHHHHHHHHHHCCeeEEEEEEec
Confidence 999865532 223556666554 7888888887642 223 23333344578888776443
No 133
>PHA03411 putative methyltransferase; Provisional
Probab=99.00 E-value=7.1e-09 Score=85.82 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=78.8
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||+|||+|.+++.++.. +..+++++|+++. +..++++. ..+.+...|..... ...+||+|++++
T Consensus 67 rVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~D~~e~~----~~~kFDlIIsNP 134 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWITSDVFEFE----SNEKFDVVISNP 134 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEECchhhhc----ccCCCcEEEEcC
Confidence 8999999999999888765 2349999999994 44444431 12345555443222 135799999998
Q ss_pred cCCCcc--c------------------HHHHHHHHHHhhCCCcEEEEEEeecC----hhHHHHHHHHHhc-CceEEE
Q 026858 148 VVYIEE--S------------------AAQLVRAMEALVADDGVVLLGYQLRS----PEAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 148 ~~~~~~--~------------------~~~~l~~l~~~l~pgG~l~i~~~~r~----~~~~~~~~~~~~~-~f~~~~ 199 (232)
+++... + +..++.....+|+|+|.+++++..+. .....++.+++.. +|....
T Consensus 135 PF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 135 PFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred CccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEecC
Confidence 886421 1 35667777888999999888765432 1234567676664 776654
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.00 E-value=1.5e-08 Score=90.56 Aligned_cols=130 Identities=13% Similarity=0.164 Sum_probs=86.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..++.+++. +..+++++|+++ ++..+++|+.+++. . .+.+...|...... ...+.||
T Consensus 250 ~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~--~-~v~~~~~D~~~~~~--~~~~~fD 322 (444)
T PRK14902 250 GGD--TVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL--T-NIETKALDARKVHE--KFAEKFD 322 (444)
T ss_pred CCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--C-eEEEEeCCcccccc--hhcccCC
Confidence 556 8999999999999988875 345999999998 57788888877652 2 26676666544321 1125799
Q ss_pred EEEEcccCCCcc---------------c-------HHHHHHHHHHhhCCCcEEEEEEeecChhH-HHHHHHHHhc--Cce
Q 026858 142 LVIAADVVYIEE---------------S-------AAQLVRAMEALVADDGVVLLGYQLRSPEA-HKLFWEMCAE--VFL 196 (232)
Q Consensus 142 ~Ii~~~~~~~~~---------------~-------~~~~l~~l~~~l~pgG~l~i~~~~r~~~~-~~~~~~~~~~--~f~ 196 (232)
+|++..+..... + ...++..+.++|+|||++++++..-.+.. ...+...++. .|.
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~ 402 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFE 402 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcE
Confidence 999865533211 1 24578899999999999998754443322 2233333443 476
Q ss_pred EEEec
Q 026858 197 IEKVP 201 (232)
Q Consensus 197 ~~~~~ 201 (232)
...+.
T Consensus 403 ~~~~~ 407 (444)
T PRK14902 403 LVPLQ 407 (444)
T ss_pred Eeccc
Confidence 65543
No 135
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.00 E-value=1.9e-08 Score=83.94 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=78.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++.. ..++|+++|+++ .+..+++|+++++. ..+.+...|..... ...+.||
T Consensus 71 ~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~---~~~~~fD 142 (264)
T TIGR00446 71 PPE--RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFG---AAVPKFD 142 (264)
T ss_pred CcC--EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhh---hhccCCC
Confidence 667 9999999999999888765 234899999998 57788888887752 23555555543221 1234699
Q ss_pred EEEEcccCCCcc----------------------cHHHHHHHHHHhhCCCcEEEEEEeecChh
Q 026858 142 LVIAADVVYIEE----------------------SAAQLVRAMEALVADDGVVLLGYQLRSPE 182 (232)
Q Consensus 142 ~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~ 182 (232)
.|++..+..... ....+++.+.++|+|||+++.++....+.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 999865543211 12458888999999999999887666554
No 136
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.99 E-value=8e-09 Score=83.58 Aligned_cols=167 Identities=19% Similarity=0.182 Sum_probs=103.9
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHH-HHH-hcC
Q 026858 37 SLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKH-NLK-RNK 113 (232)
Q Consensus 37 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~-n~~-~~~ 113 (232)
...|.+|+... . ..++. +||..|||.|.-...+|..|. +|+|+|+|+ +++.+.+ +.. ...
T Consensus 23 ~p~L~~~~~~l-~-------------~~~~~--rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~ 85 (218)
T PF05724_consen 23 NPALVEYLDSL-A-------------LKPGG--RVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTV 85 (218)
T ss_dssp THHHHHHHHHH-T-------------TSTSE--EEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEEC
T ss_pred CHHHHHHHHhc-C-------------CCCCC--eEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCc
Confidence 56677777762 2 23556 899999999999999999999 999999999 4554422 111 111
Q ss_pred CCC-------CCceEEEEeecCCCcccccCCCCccEEEEcccC--CCcccHHHHHHHHHHhhCCCcEEEEEEeec-----
Q 026858 114 PVL-------NKSLKTSVLYWNNQDQINALKPPFDLVIAADVV--YIEESAAQLVRAMEALVADDGVVLLGYQLR----- 179 (232)
Q Consensus 114 ~~~-------~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~--~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r----- 179 (232)
... ..+|.+...|+-.... ...++||+|+=..++ ..++.++...+.+.++|+|||.+++.....
T Consensus 86 ~~~~~~~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~ 163 (218)
T PF05724_consen 86 TSVGGFKRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM 163 (218)
T ss_dssp TTCTTEEEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS
T ss_pred ccccceeeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC
Confidence 111 2345666666544321 112479999965555 478899999999999999999954432111
Q ss_pred -C---hhHHHHHHHHHhcCceEEEecCCCCCCC--------CCCCceEEEEEEec
Q 026858 180 -S---PEAHKLFWEMCAEVFLIEKVPHEDLHPD--------YGYEETDVYILRKK 222 (232)
Q Consensus 180 -~---~~~~~~~~~~~~~~f~~~~~~~~~~~~~--------~~~~~~~l~~~~~~ 222 (232)
. .-..+.+.+++..+|+++.+........ -..-.-++|+++|+
T Consensus 164 ~GPPf~v~~~ev~~l~~~~f~i~~l~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 218 (218)
T PF05724_consen 164 EGPPFSVTEEEVRELFGPGFEIEELEEEDSIEEEPRFKSWGLSRFREKVYVLRRK 218 (218)
T ss_dssp SSSS----HHHHHHHHTTTEEEEEEEEEE-TTT-HHHHCCT-SS-EEEEEEEEE-
T ss_pred CCcCCCCCHHHHHHHhcCCcEEEEEecccccccccchhhcCcCceeEEEEEEEcC
Confidence 1 1335777788888999888765432221 11223457777664
No 137
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=1.4e-08 Score=90.38 Aligned_cols=128 Identities=19% Similarity=0.163 Sum_probs=83.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..++... ..+++++|.++ ++..+++|+..++.. +.+...|....... ...++||.
T Consensus 244 ~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~----~~~~~~D~~~~~~~-~~~~~fD~ 316 (427)
T PRK10901 244 NGE--RVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK----ATVIVGDARDPAQW-WDGQPFDR 316 (427)
T ss_pred CCC--EEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEcCcccchhh-cccCCCCE
Confidence 567 99999999999999888763 24999999998 577888888776522 35555554432210 11357999
Q ss_pred EEEcccCCCc---------------c-------cHHHHHHHHHHhhCCCcEEEEEEeecCh-hHHHHHHHHHhc--CceE
Q 026858 143 VIAADVVYIE---------------E-------SAAQLVRAMEALVADDGVVLLGYQLRSP-EAHKLFWEMCAE--VFLI 197 (232)
Q Consensus 143 Ii~~~~~~~~---------------~-------~~~~~l~~l~~~l~pgG~l~i~~~~r~~-~~~~~~~~~~~~--~f~~ 197 (232)
|++..+.... . ....++..+.++|+|||++++++..-.+ +....+...+++ +|.+
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~ 396 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAEL 396 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEE
Confidence 9986654321 1 1246889999999999999987643322 223333344432 5654
Q ss_pred EE
Q 026858 198 EK 199 (232)
Q Consensus 198 ~~ 199 (232)
..
T Consensus 397 ~~ 398 (427)
T PRK10901 397 LD 398 (427)
T ss_pred ec
Confidence 43
No 138
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.97 E-value=3e-08 Score=88.69 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=76.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++.. +..+++++|+++ ++..+++|+...+. ..+.+...|..... ...+||
T Consensus 250 ~g~--~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~----~~~~fD 320 (445)
T PRK14904 250 PGS--TVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS----PEEQPD 320 (445)
T ss_pred CCC--EEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc----cCCCCC
Confidence 567 9999999999999888764 234899999998 57778888877652 23566666554332 235799
Q ss_pred EEEEcccCCCc---------------c-------cHHHHHHHHHHhhCCCcEEEEEEeecCh
Q 026858 142 LVIAADVVYIE---------------E-------SAAQLVRAMEALVADDGVVLLGYQLRSP 181 (232)
Q Consensus 142 ~Ii~~~~~~~~---------------~-------~~~~~l~~l~~~l~pgG~l~i~~~~r~~ 181 (232)
.|++..+.... . ....++..+.++|+|||++++++..-.+
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 99974332110 1 1235889999999999999998765544
No 139
>PRK04457 spermidine synthase; Provisional
Probab=98.96 E-value=7.4e-09 Score=86.21 Aligned_cols=121 Identities=11% Similarity=0.150 Sum_probs=79.6
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||+|.++..+++. +..+++++|+++. +..++++..... ...++.+...|..... ....++||+|++.
T Consensus 69 ~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l--~~~~~~yD~I~~D- 143 (262)
T PRK04457 69 HILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYI--AVHRHSTDVILVD- 143 (262)
T ss_pred EEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHH--HhCCCCCCEEEEe-
Confidence 8999999999999888765 4448999999994 555555543322 2245666665543221 1123579999974
Q ss_pred cCCCcc-----cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCce
Q 026858 148 VVYIEE-----SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 148 ~~~~~~-----~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~ 196 (232)
.+.... ....+++.+.++|+|||.+++....+.+ ....+.+.++.-|.
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~ 196 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE 196 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence 322111 2368999999999999999986544443 24555666665563
No 140
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.9e-08 Score=80.60 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=80.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..+++ +|||.|.|+|.++..+|+. +.++|+..|+.+ .++.+++|+..-. +.+.+.....|...... ...
T Consensus 92 i~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l~d~v~~~~~Dv~~~~~----~~~ 163 (256)
T COG2519 92 ISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--LGDRVTLKLGDVREGID----EED 163 (256)
T ss_pred CCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--cccceEEEecccccccc----ccc
Confidence 46889 9999999999999999975 446999999998 4778888887753 43446666666655442 237
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
||.|++ +..+.-.++++++++|+|||.+.+..+.-
T Consensus 164 vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 164 VDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 999997 33566778999999999999988876443
No 141
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.95 E-value=4.4e-10 Score=92.44 Aligned_cols=141 Identities=20% Similarity=0.318 Sum_probs=95.1
Q ss_pred CCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HH
Q 026858 25 GSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MP 103 (232)
Q Consensus 25 ~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~ 103 (232)
+.+..|.++|+|+..|..++..... . -..+.++ +|||+|||+|+.++.+...++..+.+.|.|.. ++
T Consensus 86 ~vyEGg~k~wecS~dl~~~l~~e~~-~---------~~~~~~k--~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 86 GVYEGGLKLWECSVDLLPYLKEEIG-A---------QMSFSGK--RVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ceeecceEEeecHHHHHHHHHHHhh-h---------heEecCc--eeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 4678899999999999999996530 0 0156889 99999999999999999988669999999863 31
Q ss_pred -HHHHHHHhcC------CCCCCceEEEEe---ecCCCcccccCCCCccEEEEcccCCCcccHHHH-HHHHHHhhCCCcEE
Q 026858 104 -ALKHNLKRNK------PVLNKSLKTSVL---YWNNQDQINALKPPFDLVIAADVVYIEESAAQL-VRAMEALVADDGVV 172 (232)
Q Consensus 104 -~~~~n~~~~~------~~~~~~i~~~~~---d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~-l~~l~~~l~pgG~l 172 (232)
....|...+. .....-.....- ||..... ...+||+|.++..+|.....+.+ ..+...+++++|.+
T Consensus 154 ~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~ 230 (282)
T KOG2920|consen 154 LVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVF 230 (282)
T ss_pred eecccceecchhhhhhhhhcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchh
Confidence 2222222111 000000111111 3311110 11279999999999998888877 66777788999999
Q ss_pred EEEEeecC
Q 026858 173 LLGYQLRS 180 (232)
Q Consensus 173 ~i~~~~r~ 180 (232)
+++.+..+
T Consensus 231 ~~aAK~~y 238 (282)
T KOG2920|consen 231 YVAAKKLY 238 (282)
T ss_pred hhhhHhhc
Confidence 98875554
No 142
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.95 E-value=2.4e-08 Score=88.86 Aligned_cols=111 Identities=17% Similarity=0.124 Sum_probs=74.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..+++. +..+++++|+++ .+..++.|+++.+.. ..+.....|....... ...++||.
T Consensus 238 ~g~--~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~-~~~~~fD~ 312 (426)
T TIGR00563 238 NEE--TILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQW-AENEQFDR 312 (426)
T ss_pred CCC--eEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecccccccccc-ccccccCE
Confidence 567 9999999999999888875 434999999998 577888888876522 1222233332211110 12357999
Q ss_pred EEEcccCCCc------cc----------------HHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 143 VIAADVVYIE------ES----------------AAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~~~~------~~----------------~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|++..+.... .+ ...++.++.++|+|||++++++-.-.
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9974332211 11 35788999999999999999865443
No 143
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.95 E-value=9.7e-08 Score=83.13 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=83.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-ccc------------
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INA------------ 135 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~------------ 135 (232)
+|||++||+|.+++.+++.. .+|+++|.++ ++..+++|+..|+. .++.+...|+..... ...
T Consensus 209 ~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~---~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGI---DNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred eEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 79999999999999888764 4999999998 68888899888863 246777777644221 100
Q ss_pred CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCC
Q 026858 136 LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~ 204 (232)
...+||+|++.++ + ....+.+++.+.+ |++.+++++.... ....+..+. ++|+++.+....
T Consensus 285 ~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC~p~t--larDl~~L~-~gY~l~~v~~~D 345 (362)
T PRK05031 285 KSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISCNPET--LCENLETLS-QTHKVERFALFD 345 (362)
T ss_pred cCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEeCHHH--HHHHHHHHc-CCcEEEEEEEcc
Confidence 0125899998665 4 3445666666655 7888888875422 123333333 489888886544
No 144
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=2.2e-08 Score=89.06 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=85.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++.. +..+|+++|+++ .+..+++|+.+.+ + ..+.+...|...... ...++||
T Consensus 237 ~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g--~-~~v~~~~~Da~~l~~--~~~~~fD 309 (431)
T PRK14903 237 PGL--RVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK--L-SSIEIKIADAERLTE--YVQDTFD 309 (431)
T ss_pred CCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CeEEEEECchhhhhh--hhhccCC
Confidence 667 9999999999999888875 234999999998 5778888887765 2 235666666543221 1245799
Q ss_pred EEEEcccCCCcc----------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHH-HHHh--cCce
Q 026858 142 LVIAADVVYIEE----------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFW-EMCA--EVFL 196 (232)
Q Consensus 142 ~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~-~~~~--~~f~ 196 (232)
.|++..+..... ....++..+.++|+|||.+++++-.-.+...+... ..+. .+|.
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~ 389 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAE 389 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcE
Confidence 999855442111 12566888999999999999987655543333333 3333 2565
Q ss_pred EEE
Q 026858 197 IEK 199 (232)
Q Consensus 197 ~~~ 199 (232)
...
T Consensus 390 ~~~ 392 (431)
T PRK14903 390 VID 392 (431)
T ss_pred Eec
Confidence 444
No 145
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=2.3e-08 Score=85.35 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=68.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhC--CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLG--LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||||||+|..+..+++.. ..+|+++|.++ ++..+++++..++. .++.+...|...... ..+.
T Consensus 78 i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~---~nV~~i~gD~~~~~~---~~~~ 149 (322)
T PRK13943 78 LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI---ENVIFVCGDGYYGVP---EFAP 149 (322)
T ss_pred CCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCChhhccc---ccCC
Confidence 34667 99999999999999888762 23699999998 46667777766542 235555555432221 1246
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||+|++...+. .....+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVD------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchH------HhHHHHHHhcCCCCEEEEEe
Confidence 99999864332 23445678999999988854
No 146
>PRK00811 spermidine synthase; Provisional
Probab=98.93 E-value=1.8e-08 Score=84.80 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=78.3
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCC--CCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+||+||||+|.++..+++. +..+|+++|+++. ++.+++........ -..++.+...|...... ...++||+|++
T Consensus 79 ~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~--~~~~~yDvIi~ 156 (283)
T PRK00811 79 RVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA--ETENSFDVIIV 156 (283)
T ss_pred EEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh--hCCCcccEEEE
Confidence 8999999999999888776 5669999999994 55666555432111 13456666665433221 12457999998
Q ss_pred cccC-CCcc---cHHHHHHHHHHhhCCCcEEEEEEee--cChhHHHHHHHHHhcCce
Q 026858 146 ADVV-YIEE---SAAQLVRAMEALVADDGVVLLGYQL--RSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 146 ~~~~-~~~~---~~~~~l~~l~~~l~pgG~l~i~~~~--r~~~~~~~~~~~~~~~f~ 196 (232)
..+- +... ....+++.+++.|+|||.+++.... ..+.......+.++.-|.
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP 213 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCC
Confidence 4221 1111 1266788999999999998874321 122333444455555453
No 147
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.91 E-value=2e-09 Score=84.83 Aligned_cols=111 Identities=19% Similarity=0.316 Sum_probs=75.3
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD 141 (232)
..+. +||||.||||.+|+.+...|+.+|+++|.++ ++..+++|++..+ ...++.....|...... ......+||
T Consensus 41 ~~g~--~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGA--RVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT---EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCC--eEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC--CCcceeeeccCHHHHHHhhcccCCCce
Confidence 3677 9999999999999999999999999999998 5778888887665 22345555554322211 111246799
Q ss_pred EEEEcccCCCccc-HHHHHHHHH--HhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEES-AAQLVRAME--ALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~-~~~~l~~l~--~~l~pgG~l~i~~~~r 179 (232)
+|++ |+.|.... ...++..+. .+|+++|.+++-...+
T Consensus 117 iIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFL-DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEE---STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEEE-CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 9997 55565555 488888887 6889999888766544
No 148
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=4.4e-08 Score=78.75 Aligned_cols=111 Identities=15% Similarity=0.352 Sum_probs=72.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCC---CC--------------------
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPV---LN-------------------- 117 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~---~~-------------------- 117 (232)
.+..+ .+|||||.+|.+++.+|+. ++..++|+|+++. +..+++++..-... +.
T Consensus 56 ~f~~~--~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 56 WFEPK--QALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccCcc--eeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 34556 9999999999999999987 8889999999996 55666665321100 00
Q ss_pred ---------CceEEEEeec--CCCcccccCCCCccEEEEcccCC------CcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 118 ---------KSLKTSVLYW--NNQDQINALKPPFDLVIAADVVY------IEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 118 ---------~~i~~~~~d~--~~~~~~~~~~~~fD~Ii~~~~~~------~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.++.+...+. ...+-+......||+|+|-.+.. +.+.+..+++.+.++|.|||++++-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000100000 00000011234699999977663 3456889999999999999999985
No 149
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.91 E-value=3.2e-08 Score=84.29 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=56.1
Q ss_pred CCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhc-CCCCCCceEEEEe-ecCCCcc-cccCCCCcc
Q 026858 68 RRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRN-KPVLNKSLKTSVL-YWNNQDQ-INALKPPFD 141 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~-~~~~~~~i~~~~~-d~~~~~~-~~~~~~~fD 141 (232)
..+|||||||+|.+...++.. +. +++++|+++ ++..++.|+..| . +..++.+... +...... .....+.||
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~-~~~atDId~~Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGW-RFVGSDIDPQALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCC-EEEEEeCCHHHHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccccCCceE
Confidence 349999999999877666543 55 999999999 588999999988 4 4445555321 1111110 001235799
Q ss_pred EEEEcccCCCcc
Q 026858 142 LVIAADVVYIEE 153 (232)
Q Consensus 142 ~Ii~~~~~~~~~ 153 (232)
+|+|++++|...
T Consensus 192 livcNPPf~~s~ 203 (321)
T PRK11727 192 ATLCNPPFHASA 203 (321)
T ss_pred EEEeCCCCcCcc
Confidence 999999988543
No 150
>PHA03412 putative methyltransferase; Provisional
Probab=98.90 E-value=2.1e-08 Score=81.25 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=61.0
Q ss_pred cEEEeCccccHHHHHHHHh----CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL----GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~----~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|||+|||+|.+++.+++. +..+++++|+++. +..+++|.. .+.+...|+.... ..++||+||
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------~~~~~~~D~~~~~----~~~~FDlII 119 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------EATWINADALTTE----FDTLFDMAI 119 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------CCEEEEcchhccc----ccCCccEEE
Confidence 9999999999999988764 2338999999994 555555431 1345555543322 245899999
Q ss_pred EcccCCCcc------------cHHHHHHHHHHhhCCCcE
Q 026858 145 AADVVYIEE------------SAAQLVRAMEALVADDGV 171 (232)
Q Consensus 145 ~~~~~~~~~------------~~~~~l~~l~~~l~pgG~ 171 (232)
++++++... ....++....+++++|+.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999886221 144577778886666554
No 151
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.89 E-value=1.3e-08 Score=81.79 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=75.7
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhH-HHHHHHHHHhc
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPV-MPALKHNLKRN 112 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~-~~~~~~n~~~~ 112 (232)
++.-+...+.+.+. ..++. +|||||||+|..+-.++.. + ..+|+++|.++. ...+++++...
T Consensus 56 s~P~~~a~~l~~L~-------------l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~ 120 (209)
T PF01135_consen 56 SAPSMVARMLEALD-------------LKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL 120 (209)
T ss_dssp --HHHHHHHHHHTT-------------C-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-------------cCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh
Confidence 34445555555555 56888 9999999999999888876 3 236999999985 66777777766
Q ss_pred CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 113 KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+.. ++.+...|...... ..++||.|++..... .+ -..+.+.|++||++++-..
T Consensus 121 ~~~---nv~~~~gdg~~g~~---~~apfD~I~v~~a~~---~i---p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 121 GID---NVEVVVGDGSEGWP---EEAPFDRIIVTAAVP---EI---PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTH---SEEEEES-GGGTTG---GG-SEEEEEESSBBS---S-----HHHHHTEEEEEEEEEEES
T ss_pred ccC---ceeEEEcchhhccc---cCCCcCEEEEeeccc---hH---HHHHHHhcCCCcEEEEEEc
Confidence 532 46777766443332 235799999976553 22 2346778999999998653
No 152
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.88 E-value=2.1e-07 Score=80.82 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=83.1
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-cc---C--------
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NA---L-------- 136 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~---~-------- 136 (232)
+|||+|||+|.+++.+++.. .+|+++|+++ ++..+++|+..|+. .++.+...|+...... .. .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNI---DNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 79999999999999888875 4999999998 67888899888863 2367777776442210 00 0
Q ss_pred -CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCC
Q 026858 137 -KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 137 -~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~ 204 (232)
...||+|++.++ . ....+.+++.+.+ |++.+++++....- ......+. ++|+++.+.-..
T Consensus 276 ~~~~~d~v~lDPP-R-~G~~~~~l~~l~~---~~~ivYvsC~p~tl--aRDl~~L~-~~Y~l~~v~~~D 336 (353)
T TIGR02143 276 KSYNCSTIFVDPP-R-AGLDPDTCKLVQA---YERILYISCNPETL--KANLEQLS-ETHRVERFALFD 336 (353)
T ss_pred ccCCCCEEEECCC-C-CCCcHHHHHHHHc---CCcEEEEEcCHHHH--HHHHHHHh-cCcEEEEEEEcc
Confidence 113899998665 3 3445666666654 78899988754431 22333333 448888876544
No 153
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.86 E-value=4.4e-08 Score=76.55 Aligned_cols=127 Identities=19% Similarity=0.211 Sum_probs=82.3
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..+. ++||+.+|||.+++.++..|+.+++++|.+. +...+++|++..+ +.........|...........+.||+
T Consensus 42 i~g~--~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 42 IEGA--RVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALG--LEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred cCCC--EEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CccceEEEeecHHHHHHhcCCCCcccE
Confidence 4677 9999999999999999999999999999998 5778888877655 223445555554421111111225999
Q ss_pred EEEcccCCCcccHHHHHHHH----HHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEec
Q 026858 143 VIAADVVYIEESAAQLVRAM----EALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l----~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~ 201 (232)
|++ |+.|....++....-+ ...|+|+|.+++-..... -+.....+|...+..
T Consensus 118 Vfl-DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~------~~~~~~~~~~~~r~k 173 (187)
T COG0742 118 VFL-DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDV------ELPELPANFELHREK 173 (187)
T ss_pred EEe-CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc------CccccCCCeEEEEEe
Confidence 997 5555555553333332 356899999887654332 111233466665544
No 154
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.83 E-value=4.7e-08 Score=77.73 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=62.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|.++..++......++++|+++. +..++. ++ +.+...+...... ...+++||+|
T Consensus 13 ~~~--~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~~------~~~~~~d~~~~l~-~~~~~sfD~V 79 (194)
T TIGR02081 13 PGS--RVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----RG------VNVIQGDLDEGLE-AFPDKSFDYV 79 (194)
T ss_pred CCC--EEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----cC------CeEEEEEhhhccc-ccCCCCcCEE
Confidence 456 89999999999998887653337899999983 333221 11 2455555543211 1224679999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVAD 168 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~p 168 (232)
+++.++++..+...+++++.+.+++
T Consensus 80 i~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 9999998888888888888776543
No 155
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.83 E-value=8.2e-08 Score=76.12 Aligned_cols=121 Identities=13% Similarity=0.118 Sum_probs=81.1
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c----ccCCCCccE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I----NALKPPFDL 142 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~----~~~~~~fD~ 142 (232)
+|||||||||.-+.++|+. ..-+..-+|.++. ...+...+..... .+......+|+..... . ....+.||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~--~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL--PNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC--cccCCCeEeecCCCCCccccccccCCCCcce
Confidence 5999999999999888876 3337777888874 3444444443331 1112334556555421 1 113457999
Q ss_pred EEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeecC-----hhHHHHHHHHHh
Q 026858 143 VIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLRS-----PEAHKLFWEMCA 192 (232)
Q Consensus 143 Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~-----~~~~~~~~~~~~ 192 (232)
|++.+++| .++..+.+++...++|++||.+++-.+... +..-..|-+.++
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr 162 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLR 162 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHh
Confidence 99999997 667889999999999999999998643222 244566666555
No 156
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.82 E-value=8e-08 Score=78.94 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=81.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..||+ +|||-|.|+|.++..+++. +.++|+..|..+ ....+++|++..+ +...+.+...|+............
T Consensus 38 i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 38 IRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp --TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-GGCG--STT-TTS
T ss_pred CCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecceecccccccccCc
Confidence 56899 9999999999999999976 456999999998 4788888988876 556788888888643211122357
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhh-CCCcEEEEEEeecChhHHHHHHHHHh-cCce
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALV-ADDGVVLLGYQLRSPEAHKLFWEMCA-EVFL 196 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l-~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~ 196 (232)
+|.|++ |... .-.++..+.+.| ++||++++..+.-. -.+...+.+. .+|.
T Consensus 114 ~DavfL-Dlp~----Pw~~i~~~~~~L~~~gG~i~~fsP~ie--Qv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 114 FDAVFL-DLPD----PWEAIPHAKRALKKPGGRICCFSPCIE--QVQKTVEALREHGFT 165 (247)
T ss_dssp EEEEEE-ESSS----GGGGHHHHHHHE-EEEEEEEEEESSHH--HHHHHHHHHHHTTEE
T ss_pred ccEEEE-eCCC----HHHHHHHHHHHHhcCCceEEEECCCHH--HHHHHHHHHHHCCCe
Confidence 999997 3333 334677788999 89999887764332 2333344444 3664
No 157
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.80 E-value=3.6e-08 Score=87.73 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-----CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-----LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-----~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
.++ .|||+|||+|.++..+++.+ +.+|++++.|+. ....+..+..|+ +.++|++...|...... +.
T Consensus 186 ~~~--vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d~r~v~l----pe 257 (448)
T PF05185_consen 186 KDK--VVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGDMREVEL----PE 257 (448)
T ss_dssp TT---EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-TTTSCH----SS
T ss_pred cce--EEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCcccCCCC----CC
Confidence 356 89999999999998776653 569999999984 434444335554 56778999988877653 45
Q ss_pred CccEEEE--cccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 139 PFDLVIA--ADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 139 ~fD~Ii~--~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
+.|+||+ -+.+...+..+..+....+.|+|+|+++
T Consensus 258 kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 258 KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 8999996 2233455677778889999999998843
No 158
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.80 E-value=6.1e-08 Score=79.67 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=72.7
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|+|||+|+|..+..+++. +.-+++..|...+++.+.. ..++.+...|+-.. .+. +|+|++..+
T Consensus 103 ~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~---------~~rv~~~~gd~f~~-----~P~-~D~~~l~~v 167 (241)
T PF00891_consen 103 TVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE---------ADRVEFVPGDFFDP-----LPV-ADVYLLRHV 167 (241)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH---------TTTEEEEES-TTTC-----CSS-ESEEEEESS
T ss_pred EEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc---------ccccccccccHHhh-----hcc-ccceeeehh
Confidence 8999999999999888876 3339999999876554444 35689999987622 233 999999999
Q ss_pred CCC--cccHHHHHHHHHHhhCCC--cEEEEEEee
Q 026858 149 VYI--EESAAQLVRAMEALVADD--GVVLLGYQL 178 (232)
Q Consensus 149 ~~~--~~~~~~~l~~l~~~l~pg--G~l~i~~~~ 178 (232)
+|. .++...+++++++.|+|| |+|+|.+..
T Consensus 168 Lh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 168 LHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 974 456788999999999999 999998765
No 159
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.80 E-value=4.6e-08 Score=78.63 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=77.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEE-eecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSV-LYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~f 140 (232)
..+ +|||||++.|..++.+|.. . ..+++.+|.++. ...+++|.++.+ +..++.... +|+...... ...++|
T Consensus 59 ~~k--~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal~~l~~-~~~~~f 133 (219)
T COG4122 59 GPK--RILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDALDVLSR-LLDGSF 133 (219)
T ss_pred CCc--eEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHHHHHHh-ccCCCc
Confidence 556 9999999999999999876 2 458999999994 678888888776 444455555 343322211 235789
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|+|+.-. .....+.+++.+.++|+|||.+++-
T Consensus 134 DliFIDa---dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 134 DLVFIDA---DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cEEEEeC---ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 9999742 4456688999999999999999884
No 160
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.79 E-value=1.2e-08 Score=81.88 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=65.2
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
.++|+|||+|..++.+|.. +.+|+++|+|+.|...+..-..+. ...+. .+.-....++.+.+.+.|+|++..+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~-----~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPS-----TMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCc-----cccccccccccCCCcceeeehhhhh
Confidence 7999999999888888887 569999999995443332111111 11111 1111111223334678999999999
Q ss_pred CCCcccHHHHHHHHHHhhCCCc-EEEE
Q 026858 149 VYIEESAAQLVRAMEALVADDG-VVLL 174 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG-~l~i 174 (232)
+|+. +++.+.+.++++|++.| .+.+
T Consensus 110 ~HWF-dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 VHWF-DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHhh-chHHHHHHHHHHcCCCCCEEEE
Confidence 9876 56889999999998766 5555
No 161
>PLN02476 O-methyltransferase
Probab=98.78 E-value=6.2e-08 Score=80.81 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=77.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c--ccCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I--NALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~--~~~~~ 138 (232)
+.+ +|||||+++|..++.+|.. ..++++.+|.++ ....+++|++..+ +.+++.+...+...... + ....+
T Consensus 118 ~ak--~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 118 GAE--RCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred CCC--eEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 556 9999999999999999875 234899999998 4778888888776 44567777766543221 1 11135
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.||+|+... ........++.+.++|+|||.+++-
T Consensus 194 ~FD~VFIDa---~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 194 SYDFAFVDA---DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCEEEECC---CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 799999853 3456788899999999999998874
No 162
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.77 E-value=4.3e-08 Score=79.72 Aligned_cols=114 Identities=11% Similarity=0.121 Sum_probs=72.1
Q ss_pred eeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHH-HHHHH
Q 026858 32 SVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPA-LKHNL 109 (232)
Q Consensus 32 ~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~-~~~n~ 109 (232)
-++.++.-|...+..... ...++ +|||+|||||.++..+++.|+.+|+++|+++ ++.. .+.+.
T Consensus 55 ~vsr~~~kL~~~l~~~~~-------------~~~~~--~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~ 119 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNI-------------DVKNK--IVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE 119 (228)
T ss_pred hhhhhHHHHHHHHHhcCC-------------CCCCC--EEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC
Confidence 456677778888876654 55778 9999999999999999999888999999998 4443 22211
Q ss_pred HhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 110 KRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 110 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+... .-..++. ..+|.... ..-..+|+++++- ...+..+.++|++ |.+++.
T Consensus 120 ~v~~-~~~~ni~--~~~~~~~~---~d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 120 RVKV-LERTNIR--YVTPADIF---PDFATFDVSFISL--------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred CeeE-eecCCcc--cCCHhHcC---CCceeeeEEEeeh--------HhHHHHHHHHhCc-CeEEEE
Confidence 1000 0001111 22222221 0113577777643 3358889999999 777665
No 163
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.73 E-value=4.7e-07 Score=71.73 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=83.2
Q ss_pred eeechHHH--HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHH
Q 026858 32 SVWPCSLV--LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNL 109 (232)
Q Consensus 32 ~~W~~~~~--L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~ 109 (232)
+.||.-.+ +.+|+...+ +.. .|-|+|||-+.++..+. .+. +|...|+-..
T Consensus 53 ~~WP~nPvd~iI~~l~~~~----------------~~~--viaD~GCGdA~la~~~~-~~~-~V~SfDLva~-------- 104 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKRP----------------KSL--VIADFGCGDAKLAKAVP-NKH-KVHSFDLVAP-------- 104 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-----------------TTS---EEEES-TT-HHHHH---S----EEEEESS-S--------
T ss_pred hcCCCCcHHHHHHHHHhcC----------------CCE--EEEECCCchHHHHHhcc-cCc-eEEEeeccCC--------
Confidence 46886665 566665432 234 89999999998874432 233 6888886440
Q ss_pred HhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHH
Q 026858 110 KRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWE 189 (232)
Q Consensus 110 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~ 189 (232)
+..|..+ |..+. +-.+++.|++|.+-.++. .++..++.+..|+|+|||.++|+.-.........|.+
T Consensus 105 -------n~~Vtac--dia~v---PL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~ 171 (219)
T PF05148_consen 105 -------NPRVTAC--DIANV---PLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIK 171 (219)
T ss_dssp -------STTEEES---TTS----S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHH
T ss_pred -------CCCEEEe--cCccC---cCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHH
Confidence 1112222 22221 223568999999888876 5889999999999999999999986555556788888
Q ss_pred HHhc-CceEEEecCCCCCCCCCCCceEEEEEEecC
Q 026858 190 MCAE-VFLIEKVPHEDLHPDYGYEETDVYILRKKK 223 (232)
Q Consensus 190 ~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 223 (232)
.+.. ||....-.. ...=+.++.+++..
T Consensus 172 ~~~~~GF~~~~~d~-------~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 172 ALKKLGFKLKSKDE-------SNKHFVLFEFKKIR 199 (219)
T ss_dssp HHHCTTEEEEEEE---------STTEEEEEEEE-S
T ss_pred HHHHCCCeEEeccc-------CCCeEEEEEEEEcC
Confidence 8886 998876532 12235667766654
No 164
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.71 E-value=7.3e-08 Score=82.63 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=80.2
Q ss_pred eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHh
Q 026858 33 VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 33 ~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
-|--+.++..|+..... ..++. +|||||||-|.-.......+..+++|+|++. .+..++.....
T Consensus 43 NwvKs~LI~~~~~~~~~-------------~~~~~--~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~ 107 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQ-------------NRPGL--TVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQ 107 (331)
T ss_dssp HHHHHHHHHHHCHCCCC-------------TTTT---EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc-------------cCCCC--eEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 36667777777765433 23556 9999999998866666666777999999998 46666554421
Q ss_pred cCCC-------CCCceEEEEeecCCCcc---cccCCCCccEEEEcccCC----CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 112 NKPV-------LNKSLKTSVLYWNNQDQ---INALKPPFDLVIAADVVY----IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 112 ~~~~-------~~~~i~~~~~d~~~~~~---~~~~~~~fD~Ii~~~~~~----~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
.... ..-...+...|.-...- .......||+|-+-.++| ..+....+++++.+.|+|||.++.+.+
T Consensus 108 ~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 108 LKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 1100 01122333333322210 111124799999988775 345678899999999999999999885
Q ss_pred e
Q 026858 178 L 178 (232)
Q Consensus 178 ~ 178 (232)
.
T Consensus 188 d 188 (331)
T PF03291_consen 188 D 188 (331)
T ss_dssp -
T ss_pred C
Confidence 3
No 165
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.71 E-value=3.6e-08 Score=79.00 Aligned_cols=104 Identities=14% Similarity=0.190 Sum_probs=76.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c--ccCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I--NALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~--~~~~~ 138 (232)
..+ +||||||++|..++.+|+. ..++++.+|.++. ...++++++..+ +..++.+...+...... + ....+
T Consensus 45 ~~k--~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 45 RPK--RVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp T-S--EEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred CCc--eEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHHHHHhccCCC
Confidence 446 9999999999999999975 2349999999984 667777777765 45678887776543211 1 11135
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.||+|+.-. ........++.+.++|+|||.+++-
T Consensus 121 ~fD~VFiDa---~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDA---DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEES---TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEEcc---cccchhhHHHHHhhhccCCeEEEEc
Confidence 799999853 4456778888999999999999985
No 166
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.70 E-value=1.5e-07 Score=78.85 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=67.3
Q ss_pred cEEEeCccccHHHHHHHHhC-CCcEEEEcchhH-HHHHHHHHHhcCCCC-CCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLLG-LADIVLTDISPV-MPALKHNLKRNKPVL-NKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||+||||+|.++..+++.. ..+++++|+++. +..++++........ ..++.+...|.... .....++||+|++.
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~--l~~~~~~yDvIi~D 152 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF--LADTENTFDVIIVD 152 (270)
T ss_pred EEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH--HHhCCCCccEEEEe
Confidence 89999999999887777663 568999999984 556655543321111 12344444322111 11124589999985
Q ss_pred ccC--CCccc--HHHHHHHHHHhhCCCcEEEEEE
Q 026858 147 DVV--YIEES--AAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 147 ~~~--~~~~~--~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
... ..... ...+++.+.+.|+|||.+++..
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 432 11112 4677899999999999999863
No 167
>PRK03612 spermidine synthase; Provisional
Probab=98.67 E-value=3.5e-07 Score=83.26 Aligned_cols=128 Identities=17% Similarity=0.136 Sum_probs=79.0
Q ss_pred cEEEeCccccHHHHHHHHhCC-CcEEEEcchhH-HHHHHHHHHh---cCCCC-CCceEEEEeecCCCcccccCCCCccEE
Q 026858 70 RAIELGAGCGAAGMAFYLLGL-ADIVLTDISPV-MPALKHNLKR---NKPVL-NKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~-~~v~~~D~s~~-~~~~~~n~~~---~~~~~-~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+|||||||+|..+..+++.+. .+++++|+++. ++.++++... +.... .+++++...|..... ....++||+|
T Consensus 300 rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l--~~~~~~fDvI 377 (521)
T PRK03612 300 RVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL--RKLAEKFDVI 377 (521)
T ss_pred eEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH--HhCCCCCCEE
Confidence 899999999999988887743 69999999994 5555553211 11111 245666665543221 1124589999
Q ss_pred EEcccCCCcc-----cHHHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhc-CceEEE
Q 026858 144 IAADVVYIEE-----SAAQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 144 i~~~~~~~~~-----~~~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~-~f~~~~ 199 (232)
++..+..... .-..+++.+++.|+|||.+++..... .+.......+.+++ +|.+..
T Consensus 378 i~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~ 441 (521)
T PRK03612 378 IVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTP 441 (521)
T ss_pred EEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEE
Confidence 9864322111 12457889999999999998854222 22333445555555 574433
No 168
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.66 E-value=9.5e-07 Score=75.17 Aligned_cols=136 Identities=14% Similarity=0.069 Sum_probs=94.1
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCC
Q 026858 38 LVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVL 116 (232)
Q Consensus 38 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~ 116 (232)
..|++.+.+... -.+|. .|||=-||||...+.+...|+ +++|+|++. ++.-++.|+..-+..
T Consensus 183 P~lAR~mVNLa~-------------v~~G~--~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~- 245 (347)
T COG1041 183 PRLARAMVNLAR-------------VKRGE--LVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIE- 245 (347)
T ss_pred HHHHHHHHHHhc-------------cccCC--EeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcC-
Confidence 346666666555 56888 999999999999999999999 999999998 577888888765411
Q ss_pred CCceEEEEe-ecCCCcccccCCCCccEEEEcccCCCcc----------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHH
Q 026858 117 NKSLKTSVL-YWNNQDQINALKPPFDLVIAADVVYIEE----------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHK 185 (232)
Q Consensus 117 ~~~i~~~~~-d~~~~~~~~~~~~~fD~Ii~~~~~~~~~----------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~ 185 (232)
...+... |...-+ .....+|-|++ |+.|... ....+++.+.++|++||++.+..+...
T Consensus 246 --~~~~~~~~Da~~lp---l~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~----- 314 (347)
T COG1041 246 --DYPVLKVLDATNLP---LRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP----- 314 (347)
T ss_pred --ceeEEEecccccCC---CCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc-----
Confidence 1222222 443333 22236999997 5555322 377888999999999999999886221
Q ss_pred HHHHHHhcCceEEEecC
Q 026858 186 LFWEMCAEVFLIEKVPH 202 (232)
Q Consensus 186 ~~~~~~~~~f~~~~~~~ 202 (232)
.-.....+|++...-.
T Consensus 315 -~~~~~~~~f~v~~~~~ 330 (347)
T COG1041 315 -RHELEELGFKVLGRFT 330 (347)
T ss_pred -hhhHhhcCceEEEEEE
Confidence 2233345788766643
No 169
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.66 E-value=2.4e-07 Score=75.70 Aligned_cols=91 Identities=21% Similarity=0.328 Sum_probs=69.9
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccC
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV 149 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~ 149 (232)
++||||+|-|.++..++.. +.+|++++.|+.|....+ +++. . -....+|.+. ..+||+|.|.+++
T Consensus 97 ~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~--~kg~-~-----vl~~~~w~~~------~~~fDvIscLNvL 161 (265)
T PF05219_consen 97 SLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLS--KKGF-T-----VLDIDDWQQT------DFKFDVISCLNVL 161 (265)
T ss_pred ceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHH--hCCC-e-----EEehhhhhcc------CCceEEEeehhhh
Confidence 8999999999999999876 458999999996654433 1221 1 1122234322 3579999999999
Q ss_pred CCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 150 YIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 150 ~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
--......+++.+++.|+|+|+++++
T Consensus 162 DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 87888999999999999999999986
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.65 E-value=1.6e-06 Score=73.34 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=57.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..++..+. +++++|+++ ++..++++..... ...++.+...|+.... ...||
T Consensus 34 ~~~~~--~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~--~~~~v~ii~~Dal~~~-----~~~~d 103 (294)
T PTZ00338 34 IKPTD--TVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSP--LASKLEVIEGDALKTE-----FPYFD 103 (294)
T ss_pred CCCcC--EEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECCHhhhc-----ccccC
Confidence 44667 999999999999999988765 899999999 4566666665432 2245677777765432 23689
Q ss_pred EEEEcccCCC
Q 026858 142 LVIAADVVYI 151 (232)
Q Consensus 142 ~Ii~~~~~~~ 151 (232)
.|+++.+.+.
T Consensus 104 ~VvaNlPY~I 113 (294)
T PTZ00338 104 VCVANVPYQI 113 (294)
T ss_pred EEEecCCccc
Confidence 9997665553
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.63 E-value=2.2e-06 Score=71.26 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=54.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..+++.+. +++++|+++. +..++.+... ..++.+...|+.... ...||
T Consensus 27 ~~~~~--~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~~-----~~~~d 93 (258)
T PRK14896 27 DTDGD--PVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKVD-----LPEFN 93 (258)
T ss_pred CCCcC--eEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccCC-----chhce
Confidence 34667 999999999999999998865 9999999984 4454444322 134677777665432 13489
Q ss_pred EEEEcccCCC
Q 026858 142 LVIAADVVYI 151 (232)
Q Consensus 142 ~Ii~~~~~~~ 151 (232)
.|+++.+++.
T Consensus 94 ~Vv~NlPy~i 103 (258)
T PRK14896 94 KVVSNLPYQI 103 (258)
T ss_pred EEEEcCCccc
Confidence 9998777553
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.60 E-value=2.1e-06 Score=71.94 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=52.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||+|||+|.++..++..+. +++++|+++. +..++.+... .++.+...|+..... +. -.+|
T Consensus 40 ~~~~~--~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~~~~-~~--~~~~ 107 (272)
T PRK00274 40 PQPGD--NVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE------DNLTIIEGDALKVDL-SE--LQPL 107 (272)
T ss_pred CCCcC--eEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc------CceEEEEChhhcCCH-HH--cCcc
Confidence 34667 999999999999999998876 9999999994 4455443321 346777777655431 11 0158
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
.|+++.+.+
T Consensus 108 ~vv~NlPY~ 116 (272)
T PRK00274 108 KVVANLPYN 116 (272)
T ss_pred eEEEeCCcc
Confidence 888876644
No 173
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.60 E-value=1.9e-06 Score=71.50 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=88.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C--CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G--LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~--~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.+.+++||||.||.|..-+-+... + ..+++..|+++. ++.-+.-++.++ +...+.+...|.-+...........
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--LEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--CccceEEEecCCCCHhHhhccCCCC
Confidence 466789999999999977666543 2 359999999994 677777666665 5555688888876665555555678
Q ss_pred cEEEEcccCCC---cccHHHHHHHHHHhhCCCcEEEEEEeecChh
Q 026858 141 DLVIAADVVYI---EESAAQLVRAMEALVADDGVVLLGYQLRSPE 182 (232)
Q Consensus 141 D~Ii~~~~~~~---~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~ 182 (232)
++++++..+.. ...+...+..+..++.|||.++......+|.
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 99999887742 2347778999999999999999998777764
No 174
>PRK04148 hypothetical protein; Provisional
Probab=98.59 E-value=9.2e-07 Score=65.68 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=63.2
Q ss_pred HHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCC
Q 026858 39 VLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVL 116 (232)
Q Consensus 39 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~ 116 (232)
.+++|+.++.. ...+. +|||||||+|. ++..+++.|. +|+++|+++. ++.++. +.
T Consensus 3 ~i~~~l~~~~~-------------~~~~~--kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~----~~--- 59 (134)
T PRK04148 3 TIAEFIAENYE-------------KGKNK--KIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKK----LG--- 59 (134)
T ss_pred HHHHHHHHhcc-------------cccCC--EEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----hC---
Confidence 47788877665 33445 89999999996 8889998898 9999999993 333322 22
Q ss_pred CCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhC
Q 026858 117 NKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVA 167 (232)
Q Consensus 117 ~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~ 167 (232)
+.+...|+-+... ..-..+|+|.+..+ +.++...+..+++-+.
T Consensus 60 ---~~~v~dDlf~p~~--~~y~~a~liysirp---p~el~~~~~~la~~~~ 102 (134)
T PRK04148 60 ---LNAFVDDLFNPNL--EIYKNAKLIYSIRP---PRDLQPFILELAKKIN 102 (134)
T ss_pred ---CeEEECcCCCCCH--HHHhcCCEEEEeCC---CHHHHHHHHHHHHHcC
Confidence 2555666554432 11246899998643 3344444444444443
No 175
>PLN02366 spermidine synthase
Probab=98.59 E-value=1.6e-06 Score=73.73 Aligned_cols=125 Identities=13% Similarity=0.128 Sum_probs=78.0
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||+||||.|.+...+++. +..+++++|+++. ++.+++...... ..-..++.+...|...... ....++||+|++.
T Consensus 94 rVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~-~~~~~~yDvIi~D 172 (308)
T PLN02366 94 KVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK-NAPEGTYDAIIVD 172 (308)
T ss_pred eEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh-hccCCCCCEEEEc
Confidence 8999999999999888877 4468999999994 556655443211 1113456666665322111 0013579999973
Q ss_pred ccCCC-cc---cHHHHHHHHHHhhCCCcEEEEEEe--ecChhHHHHHHHHHhcCc
Q 026858 147 DVVYI-EE---SAAQLVRAMEALVADDGVVLLGYQ--LRSPEAHKLFWEMCAEVF 195 (232)
Q Consensus 147 ~~~~~-~~---~~~~~l~~l~~~l~pgG~l~i~~~--~r~~~~~~~~~~~~~~~f 195 (232)
..-.. .. --..+++.+++.|+|||.++.... .........+.+.+..-|
T Consensus 173 ~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 173 SSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 22111 11 134678999999999999876321 222344455666666666
No 176
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.58 E-value=4.7e-06 Score=71.34 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=81.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.|. +|||..||-|..++.+|+.+..+|+++|+|+ +...+.+|++.|. +...+.....|...... ..+.+|.|
T Consensus 188 ~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~---~~~~aDrI 260 (341)
T COG2520 188 EGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAP---ELGVADRI 260 (341)
T ss_pred CCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhh---ccccCCEE
Confidence 577 9999999999999999999875699999999 6999999999998 44556777776554432 22679999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+++.+. ....++....+++++||.+.+-...+.
T Consensus 261 im~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 261 IMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred EeCCCC----cchhhHHHHHHHhhcCcEEEEEeccch
Confidence 997554 335566667777888888877654443
No 177
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.56 E-value=1.4e-07 Score=75.41 Aligned_cols=99 Identities=15% Similarity=0.240 Sum_probs=76.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
.++|||||-|.+...+...+..+++.+|.|.. ++.++.. +.+ .+....+ +.+++.++....++|+|+++-.
T Consensus 75 ~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp------~i~~~~~-v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDP------SIETSYF-VGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred ceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCC------ceEEEEE-ecchhcccccccchhhhhhhhh
Confidence 89999999999998888778889999999984 4444432 211 2233333 3334445556678999999999
Q ss_pred CCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 149 VYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+||..+++..+..++..|||+|.++-+.
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHH
Confidence 9999999999999999999999988753
No 178
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.56 E-value=4.7e-07 Score=79.22 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=71.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||++||+|..++.++.. ++.+|+++|+++ +++.+++|++.|+.. .+.+...|..... .. .+.||+|++.
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~---~~~v~~~Da~~~l--~~-~~~fD~V~lD- 132 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE---NEKVFNKDANALL--HE-ERKFDVVDID- 132 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---ceEEEhhhHHHHH--hh-cCCCCEEEEC-
Confidence 8999999999999999865 656899999998 688999999988632 2344454442211 10 3469999984
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
++ .....++....+.+++||.++++
T Consensus 133 P~---Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 133 PF---GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CC---CCcHHHHHHHHHHhcCCCEEEEE
Confidence 43 34466778877778999999997
No 179
>PRK01581 speE spermidine synthase; Validated
Probab=98.56 E-value=4.6e-07 Score=77.97 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=66.1
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHH--H-hcC-CCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNL--K-RNK-PVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~--~-~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+||+||||+|.+...+.+. +..+++++|+++. ++.++... . .+. ..-.+++.+...|..... ....++||+|
T Consensus 153 rVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL--~~~~~~YDVI 230 (374)
T PRK01581 153 RVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL--SSPSSLYDVI 230 (374)
T ss_pred EEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH--HhcCCCccEE
Confidence 9999999999987777766 3459999999995 44444311 0 111 111345666555543321 1124579999
Q ss_pred EEcccCCCc------ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 144 IAADVVYIE------ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 144 i~~~~~~~~------~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++.. .... ---..+++.+++.|+|||.+++..
T Consensus 231 IvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 231 IIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9752 2111 112568899999999999987754
No 180
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.55 E-value=8e-07 Score=68.53 Aligned_cols=83 Identities=10% Similarity=-0.108 Sum_probs=59.7
Q ss_pred EEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEE
Q 026858 94 VLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVV 172 (232)
Q Consensus 94 ~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l 172 (232)
+|+|+|+. +..++++..........++.+...|..+.+ ..+++||+|+++.++++..+...++++++++|+|||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP---FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC---CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 47999984 555443332211111234677777765433 34568999999999988889999999999999999999
Q ss_pred EEEEeec
Q 026858 173 LLGYQLR 179 (232)
Q Consensus 173 ~i~~~~r 179 (232)
++.+...
T Consensus 78 ~i~d~~~ 84 (160)
T PLN02232 78 SILDFNK 84 (160)
T ss_pred EEEECCC
Confidence 9987544
No 181
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=2.2e-06 Score=68.82 Aligned_cols=143 Identities=19% Similarity=0.151 Sum_probs=86.4
Q ss_pred CCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC-ccE
Q 026858 66 STRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP-FDL 142 (232)
Q Consensus 66 ~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-fD~ 142 (232)
++ +++|||+|.|.+|+.+|.. .-.+++.+|... -+...+.....-+ + .++++.......... ... ||+
T Consensus 68 ~~--~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~--L-~nv~i~~~RaE~~~~----~~~~~D~ 138 (215)
T COG0357 68 AK--RVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG--L-ENVEIVHGRAEEFGQ----EKKQYDV 138 (215)
T ss_pred CC--EEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC--C-CCeEEehhhHhhccc----ccccCcE
Confidence 46 9999999999999999854 333799999875 3444443333322 1 224555554433331 123 999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
|.+-.+ ..+..+++.+..++++||.++...-....+........+. .++.+..+.....+.. ....++..+++
T Consensus 139 vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~--~~~r~l~ii~~ 212 (215)
T COG0357 139 VTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPEL--DGERHLVIIRK 212 (215)
T ss_pred EEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCC--CCceEEEEEec
Confidence 998643 5678899999999999998764322222122233333333 3566666654443332 44567777766
Q ss_pred cC
Q 026858 222 KK 223 (232)
Q Consensus 222 ~~ 223 (232)
++
T Consensus 213 ~k 214 (215)
T COG0357 213 RK 214 (215)
T ss_pred cC
Confidence 54
No 182
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.52 E-value=3e-07 Score=73.29 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=68.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. .|+|+.||.|..++.+|+. +...|+++|+++ +...+.+|++.|+ +...+.....|...... .+.||.
T Consensus 101 ~~e--~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~~D~~~~~~----~~~~dr 172 (200)
T PF02475_consen 101 PGE--VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVINGDAREFLP----EGKFDR 172 (200)
T ss_dssp TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG-------TT-EEE
T ss_pred cce--EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEcCCHHHhcC----ccccCE
Confidence 667 9999999999999999983 344899999998 6899999999997 55677778887655442 467999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
|+++.+-.. ..++..+.+++++||.+.
T Consensus 173 vim~lp~~~----~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 173 VIMNLPESS----LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEE--TSSG----GGGHHHHHHHEEEEEEEE
T ss_pred EEECChHHH----HHHHHHHHHHhcCCcEEE
Confidence 999765443 346667788888888764
No 183
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.52 E-value=1.1e-06 Score=72.44 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=75.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-ccc---CC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INA---LK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~---~~ 137 (232)
..+ +|||||+++|..++.+|+. .-++++.+|.++. ...++.++...+ +..+|.+...+...... +.. ..
T Consensus 79 ~ak--~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 79 NAK--NTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred CCC--EEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeccHHHHHHHHHhccccC
Confidence 446 9999999999999988875 2349999999984 566777777665 45677777765433211 100 13
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
++||+|+.-. +.......++.+.++|+|||.+++-
T Consensus 155 ~~fD~iFiDa---dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDA---DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecC---CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 5899999742 3455677888889999999998863
No 184
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=3.1e-06 Score=75.05 Aligned_cols=141 Identities=14% Similarity=0.100 Sum_probs=93.1
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCC
Q 026858 37 SLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPV 115 (232)
Q Consensus 37 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~ 115 (232)
+..|.++..+... ..++. ++||+=||.|.+++.+|.... +|+++++++ ++..+++|++.|+..
T Consensus 278 ~ekl~~~a~~~~~-------------~~~~~--~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~ 341 (432)
T COG2265 278 AEKLYETALEWLE-------------LAGGE--RVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGID 341 (432)
T ss_pred HHHHHHHHHHHHh-------------hcCCC--EEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCC
Confidence 3446666666655 45667 999999999999999997765 999999998 688999999999733
Q ss_pred CCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHH-HHhcC
Q 026858 116 LNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWE-MCAEV 194 (232)
Q Consensus 116 ~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~-~~~~~ 194 (232)
+ +.+...+.............+|.|+..++=-. .-+.+++.+. .++|..++++++. |.+...-.. +...+
T Consensus 342 --N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~~~~lk~l~-~~~p~~IvYVSCN---P~TlaRDl~~L~~~g 412 (432)
T COG2265 342 --N-VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--ADREVLKQLA-KLKPKRIVYVSCN---PATLARDLAILASTG 412 (432)
T ss_pred --c-EEEEeCCHHHHhhhccccCCCCEEEECCCCCC--CCHHHHHHHH-hcCCCcEEEEeCC---HHHHHHHHHHHHhCC
Confidence 2 67777765443321111246899998544321 1123444443 3467778888884 333333344 44457
Q ss_pred ceEEEecC
Q 026858 195 FLIEKVPH 202 (232)
Q Consensus 195 f~~~~~~~ 202 (232)
+.++++..
T Consensus 413 y~i~~v~~ 420 (432)
T COG2265 413 YEIERVQP 420 (432)
T ss_pred eEEEEEEE
Confidence 77776643
No 185
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.47 E-value=6.4e-07 Score=74.95 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=78.4
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcC---CCCCCceEEEEeecCCCc---ccccC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNK---PVLNKSLKTSVLYWNNQD---QINAL 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~---~~~~~~i~~~~~d~~~~~---~~~~~ 136 (232)
.++. .+++||||-|--.+..-+.|++.++++|+.++ +..+++..+... ....-.+.+...|..... ..+..
T Consensus 116 ~~~~--~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 116 KRGD--DVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred cccc--ccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 3667 89999999998877777888889999999985 665554332211 111112345555543332 12222
Q ss_pred CCCccEEEEcccCC----CcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 137 KPPFDLVIAADVVY----IEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~----~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+.+||+|=|-.++| ..+...-++.++.++|+|||.++-..+...
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 34599999888775 235678889999999999999998775443
No 186
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.47 E-value=1.7e-06 Score=68.96 Aligned_cols=124 Identities=9% Similarity=-0.006 Sum_probs=78.3
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
.+||||||.|...+.+|.. +-..++|+|+.. .+..+...+.... ..++.+...|.......-..+++.|-|....
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 8999999999999888876 334999999997 4555555554443 2346777777655332122346899998865
Q ss_pred cCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc---CceEE
Q 026858 148 VVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE---VFLIE 198 (232)
Q Consensus 148 ~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~---~f~~~ 198 (232)
+==++. .-+.++..+.++|+|||.+.+.+....+ .+...+.+.. .|...
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y--~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEY--AEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHH--HHHHHHHHHHHSTTEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHH--HHHHHHHHHhcCcCeEEc
Confidence 543333 3578999999999999999998755432 2333333333 56554
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.45 E-value=7.8e-06 Score=67.74 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=49.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc-
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD- 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD- 141 (232)
.++. +|||+|||+|.++..+++.+. +++++|+++. +..++.+... ..++.+...|+..... ..||
T Consensus 28 ~~~~--~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~~~-----~~~d~ 94 (253)
T TIGR00755 28 LEGD--VVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKVDL-----PDFPK 94 (253)
T ss_pred CCcC--EEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcCCh-----hHcCC
Confidence 3566 999999999999999998876 8999999994 4444443321 2345666666544331 1355
Q ss_pred --EEEEcccCC
Q 026858 142 --LVIAADVVY 150 (232)
Q Consensus 142 --~Ii~~~~~~ 150 (232)
+|+++.+++
T Consensus 95 ~~~vvsNlPy~ 105 (253)
T TIGR00755 95 QLKVVSNLPYN 105 (253)
T ss_pred cceEEEcCChh
Confidence 777665543
No 188
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.40 E-value=8e-06 Score=66.56 Aligned_cols=124 Identities=10% Similarity=0.110 Sum_probs=80.2
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
...|-|+|||-+-++. ... ..|+..|+-+ .+.+|..+.+ .+ .+..+++.|++|.+-
T Consensus 181 ~~vIaD~GCGEakiA~---~~~-~kV~SfDL~a---------------~~~~V~~cDm--~~---vPl~d~svDvaV~CL 236 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS---SER-HKVHSFDLVA---------------VNERVIACDM--RN---VPLEDESVDVAVFCL 236 (325)
T ss_pred ceEEEecccchhhhhh---ccc-cceeeeeeec---------------CCCceeeccc--cC---CcCccCcccEEEeeH
Confidence 3489999999975544 223 3788888644 1122233322 22 222467899999988
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEecCCCCCCCCCCCceEEEEEEecC
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVPHEDLHPDYGYEETDVYILRKKK 223 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 223 (232)
.++. .++..++.++.|+|++||.++|+.-.........|...+.. ||.+..... ...-+.+|.+++..
T Consensus 237 SLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~-------~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 237 SLMG-TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDV-------SNKYFTLFEFKKTP 305 (325)
T ss_pred hhhc-ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhh-------hcceEEEEEEecCC
Confidence 7775 57889999999999999999998754443444456666664 888776532 22334566665543
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.39 E-value=4.4e-06 Score=65.80 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=67.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+++|||+|.|.+|+.+|.. +..+++.+|... -+.........-+ + .++.+...+... .....+||+|++-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~--L-~nv~v~~~R~E~----~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG--L-SNVEVINGRAEE----PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH----TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC--C-CCEEEEEeeecc----cccCCCccEEEeeh
Confidence 7999999999999999876 444899999886 2444443333332 2 135666665544 12356899999864
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+ ..+..+++.+..++++||.+++.-
T Consensus 124 v----~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 124 V----APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp S----SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred h----cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 4 567889999999999999988654
No 190
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.39 E-value=2.2e-06 Score=69.59 Aligned_cols=109 Identities=9% Similarity=-0.011 Sum_probs=78.2
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
.+||||||.|...+.+|+. +-..++|+++.. .+..+...+..... . ++.....|..........+++.|-|..+.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l--~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL--K-NLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC--C-cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 8999999999999888877 444899999987 56666665555542 1 35666665544333222345899999876
Q ss_pred cCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeecCh
Q 026858 148 VVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLRSP 181 (232)
Q Consensus 148 ~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r~~ 181 (232)
+==|+. .-+.+++.+.+.|+|||.+.+.+....+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 654443 3468999999999999999999865543
No 191
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.37 E-value=7e-06 Score=62.65 Aligned_cols=126 Identities=16% Similarity=0.084 Sum_probs=83.9
Q ss_pred ceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhC--CCcEEEEcchhH-HHHHHH
Q 026858 31 TSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLG--LADIVLTDISPV-MPALKH 107 (232)
Q Consensus 31 ~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~~-~~~~~~ 107 (232)
+-+=|+|..+++-|..... .-.+. .|||+|.|||.++-.+.+.| ...++++++|+. .....+
T Consensus 27 GaI~PsSs~lA~~M~s~I~-------------pesgl--pVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~ 91 (194)
T COG3963 27 GAILPSSSILARKMASVID-------------PESGL--PVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ 91 (194)
T ss_pred eeecCCcHHHHHHHHhccC-------------cccCC--eeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH
Confidence 4466788888888887665 34566 89999999999998887774 348999999983 222222
Q ss_pred HHHhcCCCCCCceEEEEeecCCCcc--cccCCCCccEEEEcccCCC--cccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 108 NLKRNKPVLNKSLKTSVLYWNNQDQ--INALKPPFDLVIAADVVYI--EESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 108 n~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
. .+. +.+..+|.-+... .++....||.|+++-++.+ .+..-.+++.+...+.+||.++...+..
T Consensus 92 ~----~p~----~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 92 L----YPG----VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred h----CCC----ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 1 111 1233333222221 1222346999999888753 3455677888888999999999887653
No 192
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.37 E-value=3.1e-05 Score=67.29 Aligned_cols=164 Identities=16% Similarity=0.114 Sum_probs=92.9
Q ss_pred EeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCC
Q 026858 11 LPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGL 90 (232)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~ 90 (232)
+.+.++.++++..++.+.=. -+.....|.+++.+... . ... .|||+-||+|.+|+.+|....
T Consensus 158 l~~~~~~~~~~~~~~sFfQv--N~~~~~~l~~~~~~~l~-------------~-~~~--~vlDlycG~G~fsl~la~~~~ 219 (352)
T PF05958_consen 158 LEIQDKGLSFRISPGSFFQV--NPEQNEKLYEQALEWLD-------------L-SKG--DVLDLYCGVGTFSLPLAKKAK 219 (352)
T ss_dssp --ECCCTEEEEEETTS---S--BHHHHHHHHHHHHHHCT-------------T--TT--EEEEES-TTTCCHHHHHCCSS
T ss_pred eeeeccceEEEECCCcCccC--cHHHHHHHHHHHHHHhh-------------c-CCC--cEEEEeecCCHHHHHHHhhCC
Confidence 33455556666666532222 23355667777777665 2 223 799999999999999999765
Q ss_pred CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-------c---cc---CCCCccEEEEcccCCCcccHH
Q 026858 91 ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-------I---NA---LKPPFDLVIAADVVYIEESAA 156 (232)
Q Consensus 91 ~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-------~---~~---~~~~fD~Ii~~~~~~~~~~~~ 156 (232)
+|+++|+++ ++..++.|+..|+.. ++.+...+..+... + .+ ....+|+|+..++=-. .-+
T Consensus 220 -~V~gvE~~~~av~~A~~Na~~N~i~---n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G--~~~ 293 (352)
T PF05958_consen 220 -KVIGVEIVEEAVEDARENAKLNGID---NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAG--LDE 293 (352)
T ss_dssp -EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT---SCH
T ss_pred -eEEEeeCCHHHHHHHHHHHHHcCCC---cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCC--chH
Confidence 999999998 688999999998732 36777665432110 0 01 1125899997554332 123
Q ss_pred HHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCC
Q 026858 157 QLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 157 ~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~ 204 (232)
.+++.+.+ +.-.+++++..... ...+ ..+.++|++..+....
T Consensus 294 ~~~~~~~~---~~~ivYvSCnP~tl--aRDl-~~L~~~y~~~~v~~~D 335 (352)
T PF05958_consen 294 KVIELIKK---LKRIVYVSCNPATL--ARDL-KILKEGYKLEKVQPVD 335 (352)
T ss_dssp HHHHHHHH---SSEEEEEES-HHHH--HHHH-HHHHCCEEEEEEEEE-
T ss_pred HHHHHHhc---CCeEEEEECCHHHH--HHHH-HHHhhcCEEEEEEEee
Confidence 45555543 45567777754331 2223 3345689988876544
No 193
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.37 E-value=2.2e-06 Score=70.68 Aligned_cols=136 Identities=19% Similarity=0.238 Sum_probs=81.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcC-CCC------------------------CC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNK-PVL------------------------NK 118 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~-~~~------------------------~~ 118 (232)
.+. ++||||||+-+.....|..-+.++++.|+.+. .+...+=+.... .++ ..
T Consensus 56 ~g~--~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGE--TLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EE--EEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCC--EEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 556 89999999976655555555668999999873 333322211110 001 11
Q ss_pred ce-EEEEeecCCCccccc---CCCCccEEEEcccCC----CcccHHHHHHHHHHhhCCCcEEEEEEeecC----------
Q 026858 119 SL-KTSVLYWNNQDQINA---LKPPFDLVIAADVVY----IEESAAQLVRAMEALVADDGVVLLGYQLRS---------- 180 (232)
Q Consensus 119 ~i-~~~~~d~~~~~~~~~---~~~~fD~Ii~~~~~~----~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~---------- 180 (232)
.| .+...|+.+...... .+.+||+|++..++. ..+....+++++.++|||||.++++.-...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 12 245667777665433 233599999988884 445778889999999999999999632211
Q ss_pred ---hhHHHHHHHHHh-cCceEEEecC
Q 026858 181 ---PEAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 181 ---~~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
+...+...+.+. .||.+....+
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 233455555565 4999988873
No 194
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.34 E-value=2.2e-05 Score=70.42 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=76.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||++||+|.-+..+|.. +.+.+++.|+++ .+..++.|+++.+.. ++.....|..... ....+.||
T Consensus 113 pg~--~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~---nv~v~~~D~~~~~--~~~~~~fD 185 (470)
T PRK11933 113 APQ--RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS---NVALTHFDGRVFG--AALPETFD 185 (470)
T ss_pred CCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEeCchhhhh--hhchhhcC
Confidence 667 9999999999988777765 334899999998 478888888876522 2444444432211 12235699
Q ss_pred EEEEcccCCCc----c------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHH
Q 026858 142 LVIAADVVYIE----E------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHK 185 (232)
Q Consensus 142 ~Ii~~~~~~~~----~------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~ 185 (232)
.|++-.+.... . .-..++....++|+|||+++.++-.-.+..-+
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE 251 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ 251 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence 99974443211 1 12567788889999999999887665544333
No 195
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.33 E-value=3.5e-06 Score=73.47 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=73.9
Q ss_pred CcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 69 RRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
.+|||+.||+|..++.+++. |+.+|+++|+++ ++..+++|++.|... ++.+...|...... ....+||+|..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~---~~~v~~~Da~~~l~--~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE---NIEVPNEDAANVLR--YRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEchhHHHHHH--HhCCCCCEEEe
Confidence 38999999999999999886 677999999999 688999999888632 24455544332221 11246999997
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|++. ...+++..+.+.++++|.++++
T Consensus 121 -DPfG---s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 121 -DPFG---TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -CCCC---CcHHHHHHHHHhcccCCEEEEE
Confidence 5543 3356888888999999999997
No 196
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.30 E-value=1.8e-06 Score=72.63 Aligned_cols=106 Identities=18% Similarity=0.303 Sum_probs=72.1
Q ss_pred CCcEEEeCccccHH--H--HHHHHh------CCCcEEEEcchh-HHHHHHHHHH------------------h--c----
Q 026858 68 RRRAIELGAGCGAA--G--MAFYLL------GLADIVLTDISP-VMPALKHNLK------------------R--N---- 112 (232)
Q Consensus 68 ~~~VLElGcGtG~~--s--~~la~~------~~~~v~~~D~s~-~~~~~~~n~~------------------~--~---- 112 (232)
+++|+-.||+||-- | +.+... .. +|+++|+|+ ++..++...- . +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~-~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRW-KVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCc-EEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 46999999999983 3 333332 13 799999998 4555444310 0 0
Q ss_pred ----CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 113 ----KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 113 ----~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+.+...|.|...+...... + ..+.||+|+|.+++. ..+....+++.+++.|+|||.+++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~-~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQW-A-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCC-c-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01134567788877765321 1 136799999988773 45678999999999999999988765
No 197
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.29 E-value=9.6e-07 Score=70.27 Aligned_cols=106 Identities=25% Similarity=0.389 Sum_probs=63.9
Q ss_pred CCCcEEEeCccccHH----HHHHHHh-----C--CCcEEEEcchhH-HHHHHHHH-----Hhc--------------C--
Q 026858 67 TRRRAIELGAGCGAA----GMAFYLL-----G--LADIVLTDISPV-MPALKHNL-----KRN--------------K-- 113 (232)
Q Consensus 67 ~~~~VLElGcGtG~~----s~~la~~-----~--~~~v~~~D~s~~-~~~~~~n~-----~~~--------------~-- 113 (232)
.+++|+-.||+||-= ++.+... + . +++++|+|+. +..+++-. .++ +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~-~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDF-RILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SE-EEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCce-EEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 456999999999983 2333331 1 3 8999999983 44433211 000 0
Q ss_pred ----CCCCCceEEEEeecCCCcccccCCCCccEEEEcccC--CCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 114 ----PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV--YIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 114 ----~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~--~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+.+...|.|...+..+.. ...+.||+|+|-+++ +..+....+++.+++.|+|||.+++..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~---~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPD---PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eeEChHHcCceEEEecccCCCC---cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 001346889988887722 134689999999988 356778999999999999999999975
No 198
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=7.3e-06 Score=64.79 Aligned_cols=101 Identities=17% Similarity=0.242 Sum_probs=70.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CC--CcEEEEcchh-HHHHHHHHHHhcCC-----C--CCCceEEEEeecCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GL--ADIVLTDISP-VMPALKHNLKRNKP-----V--LNKSLKTSVLYWNNQDQ 132 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~--~~v~~~D~s~-~~~~~~~n~~~~~~-----~--~~~~i~~~~~d~~~~~~ 132 (232)
.++. +.||+|+|||.++-.+++. ++ ...+++|.-+ .++...+|+..... . -..++.+...|......
T Consensus 81 ~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 81 QPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred ccCc--ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 3888 9999999999999888865 22 1448999766 57777887765431 0 13445666665544442
Q ss_pred cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 133 INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 133 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
...+||.|.+.. ....+-+.+...|++||++++-
T Consensus 159 ---e~a~YDaIhvGA------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 ---EQAPYDAIHVGA------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ---ccCCcceEEEcc------CccccHHHHHHhhccCCeEEEe
Confidence 345799999873 3344566778889999999874
No 199
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.27 E-value=1.8e-06 Score=76.50 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=79.6
Q ss_pred CCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHH-HHH
Q 026858 27 MHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVM-PAL 105 (232)
Q Consensus 27 ~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~-~~~ 105 (232)
.+.|+....++....+.+.+..... ...+.=..+||+|||+|.++-.+...+. ....+-....- .+.
T Consensus 88 Pgggt~F~~Ga~~Yid~i~~~~~~~-----------~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qv 155 (506)
T PF03141_consen 88 PGGGTMFPHGADHYIDQIAEMIPLI-----------KWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQV 155 (506)
T ss_pred CCCCccccCCHHHHHHHHHHHhhcc-----------ccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhh
Confidence 3455566667777777777766510 0122223899999999999988888765 33333332211 122
Q ss_pred HHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc-ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 106 KHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE-ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 106 ~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~-~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+-.+++..+.. +... ...-+++.++.||+|.|+.+.-.+ ..-..++-++.|+|+|||+++.+.+..
T Consensus 156 qfaleRGvpa~---~~~~-----~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 156 QFALERGVPAM---IGVL-----GSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hhhhhcCcchh---hhhh-----ccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 22222222111 1110 011234556789999999998633 333567889999999999999987653
No 200
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.1e-06 Score=65.35 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=58.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.+.++ .++|||||+|.+++..+..+...|+|+|+++ +++...+|...-.. ++.+.+-+..+... ..+.||
T Consensus 46 diEgk--kl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv----qidlLqcdildle~---~~g~fD 116 (185)
T KOG3420|consen 46 DIEGK--KLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV----QIDLLQCDILDLEL---KGGIFD 116 (185)
T ss_pred cccCc--chhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh----hhheeeeeccchhc---cCCeEe
Confidence 47889 9999999999999888888888999999999 57777777765431 22444444443332 236799
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
.++.++++.
T Consensus 117 taviNppFG 125 (185)
T KOG3420|consen 117 TAVINPPFG 125 (185)
T ss_pred eEEecCCCC
Confidence 999988885
No 201
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.26 E-value=3.8e-05 Score=60.36 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=68.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhC--CC--------cEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLG--LA--------DIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQD 131 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~--~~--------~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~ 131 (232)
..++. .|||--||+|.+.+.++..+ .. ++++.|+++ ++..++.|+...+ +...+.+...|.....
T Consensus 26 ~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 26 WRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--VEDYIDFIQWDARELP 101 (179)
T ss_dssp --TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE--GGGGG
T ss_pred CCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--cCCceEEEecchhhcc
Confidence 34666 99999999999998887662 31 278999998 5788888988765 4456777777765544
Q ss_pred ccccCCCCccEEEEcccCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 132 QINALKPPFDLVIAADVVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 132 ~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
...+.+|.|+++++..... ....+++.+.+++++ ..+++....+
T Consensus 102 ---~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~ 153 (179)
T PF01170_consen 102 ---LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR 153 (179)
T ss_dssp ---GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC
T ss_pred ---cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH
Confidence 2346899999977764221 233445666666777 5555554333
No 202
>PLN02823 spermine synthase
Probab=98.22 E-value=1.7e-05 Score=68.23 Aligned_cols=124 Identities=14% Similarity=0.187 Sum_probs=76.6
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCC-CCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPV-LNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||.||+|.|.+...+.+. +..+++++|+++. ++.+++....+... ..+++.+...|..... ....++||+|++.
T Consensus 106 ~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L--~~~~~~yDvIi~D 183 (336)
T PLN02823 106 TVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL--EKRDEKFDVIIGD 183 (336)
T ss_pred EEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH--hhCCCCccEEEec
Confidence 8999999999988877765 4568999999994 55666554433211 1345666665533322 1224579999974
Q ss_pred ccCCC----cc---cHHHHHH-HHHHhhCCCcEEEEEEee----cChhHHHHHHHHHhcCce
Q 026858 147 DVVYI----EE---SAAQLVR-AMEALVADDGVVLLGYQL----RSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 147 ~~~~~----~~---~~~~~l~-~l~~~l~pgG~l~i~~~~----r~~~~~~~~~~~~~~~f~ 196 (232)
.... +. --..+++ .+.+.|+|||.+++-... ..........+.+...|.
T Consensus 184 -~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~ 244 (336)
T PLN02823 184 -LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK 244 (336)
T ss_pred -CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC
Confidence 2211 00 1235676 889999999998764322 122334455556666564
No 203
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.20 E-value=8.5e-05 Score=70.20 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=98.9
Q ss_pred eEEEeecCeeEEEEEcCCCCCccce-------eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTS-------VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGA 80 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~-------~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~ 80 (232)
.|.+.+.+...+|.-+.+..+--.| .-|--..|+.-+.....+ ..++. .++|-+||+|.
T Consensus 138 ~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w------------~~~~~--~l~DP~CGSGT 203 (702)
T PRK11783 138 RINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLRSGW------------PQEGT--PLLDPMCGSGT 203 (702)
T ss_pred EEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHHcCC------------CCCCC--eEEccCCCccH
Confidence 6777788888888777753322222 222334466655544331 02456 89999999999
Q ss_pred HHHHHHHh------C-------------------------------------CCcEEEEcchh-HHHHHHHHHHhcCCCC
Q 026858 81 AGMAFYLL------G-------------------------------------LADIVLTDISP-VMPALKHNLKRNKPVL 116 (232)
Q Consensus 81 ~s~~la~~------~-------------------------------------~~~v~~~D~s~-~~~~~~~n~~~~~~~~ 116 (232)
+.+.+|.. | ..+++++|+++ ++..++.|+..++ +
T Consensus 204 ilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g--~ 281 (702)
T PRK11783 204 LLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAG--V 281 (702)
T ss_pred HHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcC--C
Confidence 99877652 0 01599999998 6889999998876 4
Q ss_pred CCceEEEEeecCCCcccccCCCCccEEEEcccCCCc----ccHHHHHHHHHHhhC---CCcEEEEEEe
Q 026858 117 NKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE----ESAAQLVRAMEALVA---DDGVVLLGYQ 177 (232)
Q Consensus 117 ~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~---pgG~l~i~~~ 177 (232)
...+.+...|+.+... ....++||+|++++++... .+...+...+.+.++ +|+.+++...
T Consensus 282 ~~~i~~~~~D~~~~~~-~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 282 AELITFEVKDVADLKN-PLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred CcceEEEeCChhhccc-ccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4557777777765432 1112469999998776422 234555555555554 8888877763
No 204
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=0.00011 Score=59.36 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=94.9
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcC
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNK 113 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~ 113 (232)
.++.-|...+....- ..+++ .+||+|+.||-++..+.+.|+.+|+++|.... +..-.+ +.
T Consensus 62 RG~~KL~~ale~F~l-------------~~k~k--v~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR----~d 122 (245)
T COG1189 62 RGGLKLEKALEEFEL-------------DVKGK--VVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR----ND 122 (245)
T ss_pred cHHHHHHHHHHhcCc-------------CCCCC--EEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh----cC
Confidence 346667777766554 67888 99999999999999999999999999998762 111111 11
Q ss_pred CCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe---------------e
Q 026858 114 PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ---------------L 178 (232)
Q Consensus 114 ~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~---------------~ 178 (232)
...+.....++....... ..+..|++++.-.+ -.+..++..+..++++++.++...+ .
T Consensus 123 ---~rV~~~E~tN~r~l~~~~-~~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv 195 (245)
T COG1189 123 ---PRVIVLERTNVRYLTPED-FTEKPDLIVIDVSF---ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVV 195 (245)
T ss_pred ---CcEEEEecCChhhCCHHH-cccCCCeEEEEeeh---hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCcee
Confidence 112334444443332211 23467899874433 3567788899999999988777522 1
Q ss_pred cCh----hHHHHHHHHHhc-CceEEEecCCCCCCC
Q 026858 179 RSP----EAHKLFWEMCAE-VFLIEKVPHEDLHPD 208 (232)
Q Consensus 179 r~~----~~~~~~~~~~~~-~f~~~~~~~~~~~~~ 208 (232)
+.+ .....+.+.+.+ +|.+..+....+...
T Consensus 196 ~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~ 230 (245)
T COG1189 196 RDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGG 230 (245)
T ss_pred cCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence 122 234445555554 799888876655544
No 205
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.19 E-value=9.5e-05 Score=67.65 Aligned_cols=151 Identities=15% Similarity=0.075 Sum_probs=84.4
Q ss_pred CcEEEeCccccHHHHHHHHhC---------CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCc--ccccC
Q 026858 69 RRAIELGAGCGAAGMAFYLLG---------LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQD--QINAL 136 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~---------~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 136 (232)
.+|||.|||+|.+...++... ...++++|+++ ++..++.++.... .. .+.....+..... .....
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~--~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LL--EINVINFNSLSYVLLNIESY 109 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CC--Cceeeecccccccccccccc
Confidence 389999999999887776431 13789999998 4666666665432 11 1111211111100 00112
Q ss_pred CCCccEEEEcccCCCcc----c------------------------------------------HHHH-HHHHHHhhCCC
Q 026858 137 KPPFDLVIAADVVYIEE----S------------------------------------------AAQL-VRAMEALVADD 169 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~----~------------------------------------------~~~~-l~~l~~~l~pg 169 (232)
.+.||+||++++.-... . ...+ ++...++|++|
T Consensus 110 ~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~ 189 (524)
T TIGR02987 110 LDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKN 189 (524)
T ss_pred cCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCC
Confidence 35799999988874211 0 0012 35567888999
Q ss_pred cEEEEEEeecC--hhHHHHHHHHHhcCceEEEecCCCC-CCCCC--CCceEEEEEEec
Q 026858 170 GVVLLGYQLRS--PEAHKLFWEMCAEVFLIEKVPHEDL-HPDYG--YEETDVYILRKK 222 (232)
Q Consensus 170 G~l~i~~~~r~--~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~--~~~~~l~~~~~~ 222 (232)
|++.++.+..- ......+.+.+-+...+..+..... ...|. .....++.+++.
T Consensus 190 G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f~~~~~lF~~v~~~~~i~~l~k~ 247 (524)
T TIGR02987 190 GYVSIISPASWLGDKTGENLREYIFNNRLINCIQYFQEEAKLFSGVNQATSIIHLNSG 247 (524)
T ss_pred CEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEECCccccCcCCCCcceEEEEEECC
Confidence 99998765431 1234566666666566665544322 22343 223446666543
No 206
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.12 E-value=5.4e-06 Score=63.77 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=53.2
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
.|+|+.||.|..++.+|+... +|+++|+++. +..+++|++.-+ +..++.+...||.+..........+|+|+++++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 699999999999999999865 9999999995 888899988776 566799999998765421111112899998775
Q ss_pred C
Q 026858 149 V 149 (232)
Q Consensus 149 ~ 149 (232)
-
T Consensus 79 W 79 (163)
T PF09445_consen 79 W 79 (163)
T ss_dssp B
T ss_pred C
Confidence 4
No 207
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.10 E-value=7.1e-05 Score=59.93 Aligned_cols=128 Identities=15% Similarity=0.224 Sum_probs=77.0
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+.||.|||.|.++..+...-+.+|-.+|..+- +..++..+.... .....+......+.. ...++||+|++--+
T Consensus 58 ~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~---P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 58 RALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFT---PEEGKYDLIWIQWC 131 (218)
T ss_dssp EEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG-------TT-EEEEEEES-
T ss_pred eEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhcc---CCCCcEeEEEehHh
Confidence 99999999999998776655779999999883 444443322211 111233333222221 22468999999888
Q ss_pred CC--CcccHHHHHHHHHHhhCCCcEEEEEEeecC-------------hhHHHHHHHHHhc-CceEEEecCC
Q 026858 149 VY--IEESAAQLVRAMEALVADDGVVLLGYQLRS-------------PEAHKLFWEMCAE-VFLIEKVPHE 203 (232)
Q Consensus 149 ~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~-------------~~~~~~~~~~~~~-~f~~~~~~~~ 203 (232)
+. ...++-.+++.+++.|+|+|.|++-...-. ....+.|.++.++ ++.+.....+
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 84 456888999999999999999998422111 0125677777764 8887665443
No 208
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.10 E-value=1.4e-05 Score=64.12 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=55.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHH-HHH---HHHh---cCCCCCCceEEEEeecCCCccccc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPA-LKH---NLKR---NKPVLNKSLKTSVLYWNNQDQINA 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~-~~~---n~~~---~~~~~~~~i~~~~~d~~~~~~~~~ 135 (232)
.++. .++|||||.|.+.+.+|.. ++.+++|+++.+.... +.. ..+. .......++.+...|+.+......
T Consensus 41 ~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 41 TPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp -TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 3567 9999999999988877754 8877999999874222 211 1111 111113455666665544321111
Q ss_pred CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEE
Q 026858 136 LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
.-..-|+|++++..+.++.... +..+...||+|.+++-
T Consensus 119 ~~s~AdvVf~Nn~~F~~~l~~~-L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 119 IWSDADVVFVNNTCFDPDLNLA-LAELLLELKPGARIIS 156 (205)
T ss_dssp HGHC-SEEEE--TTT-HHHHHH-HHHHHTTS-TT-EEEE
T ss_pred hhcCCCEEEEeccccCHHHHHH-HHHHHhcCCCCCEEEE
Confidence 1134699999988886554444 4556667788877654
No 209
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.08 E-value=0.00011 Score=58.67 Aligned_cols=137 Identities=14% Similarity=0.129 Sum_probs=86.0
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCC
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKP 114 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~ 114 (232)
+++..|.+|+....... .....++++|||||=+....+ ...+.-.|+.+|+++. ..
T Consensus 30 dSSK~lv~wL~~~~~~~-----------~~~~~~lrlLEVGals~~N~~--s~~~~fdvt~IDLns~---------~~-- 85 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRP-----------KNGRPKLRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ---------HP-- 85 (219)
T ss_pred chhHHHHHHhhhhcccc-----------ccccccceEEeecccCCCCcc--cccCceeeEEeecCCC---------CC--
Confidence 57889999998765411 111124699999996432111 1223337999998761 00
Q ss_pred CCCCceEEEEeecCCCcccccCCCCccEEEEcccCC---CcccHHHHHHHHHHhhCCCcE-----EEEEEe-----ecCh
Q 026858 115 VLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVY---IEESAAQLVRAMEALVADDGV-----VLLGYQ-----LRSP 181 (232)
Q Consensus 115 ~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~---~~~~~~~~l~~l~~~l~pgG~-----l~i~~~-----~r~~ 181 (232)
...+-|+...+.-....++||+|.++-++- .+...-.+++.++++|+|+|. ++++.+ +..+
T Consensus 86 ------~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy 159 (219)
T PF11968_consen 86 ------GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRY 159 (219)
T ss_pred ------CceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccc
Confidence 112223322211111246899999998884 455788899999999999999 888643 2334
Q ss_pred hHHHHHHHHHhc-CceEEEec
Q 026858 182 EAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 182 ~~~~~~~~~~~~-~f~~~~~~ 201 (232)
...+.|...+.. ||......
T Consensus 160 ~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 160 MTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred cCHHHHHHHHHhCCcEEEEEE
Confidence 557777777776 88776654
No 210
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.08 E-value=5.9e-05 Score=64.28 Aligned_cols=156 Identities=17% Similarity=0.083 Sum_probs=83.4
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--------CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--------GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--------~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~ 133 (232)
..++. +|+|-.||+|.+.+.+.+. ...+++|+|+++ ++..+..|+...+... ........|.-.....
T Consensus 44 ~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~-~~~~i~~~d~l~~~~~ 120 (311)
T PF02384_consen 44 PKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN-SNINIIQGDSLENDKF 120 (311)
T ss_dssp T-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC-BGCEEEES-TTTSHSC
T ss_pred ccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc-cccccccccccccccc
Confidence 44566 8999999999987766541 333899999998 4556666665443111 1122333332221110
Q ss_pred ccCCCCccEEEEcccCCCc--c-------------------cHHHHHHHHHHhhCCCcEEEEEEeecC---hhHHHHHHH
Q 026858 134 NALKPPFDLVIAADVVYIE--E-------------------SAAQLVRAMEALVADDGVVLLGYQLRS---PEAHKLFWE 189 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~--~-------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~---~~~~~~~~~ 189 (232)
. ....||+|++++++... . .--.++..+.+.|++||++.++.+..- ......+.+
T Consensus 121 ~-~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~ 199 (311)
T PF02384_consen 121 I-KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRK 199 (311)
T ss_dssp T-ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHH
T ss_pred c-cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHH
Confidence 0 13579999998887432 0 112477888999999999877765321 122455666
Q ss_pred HHhcCceEEEecCCCCCCCCC--CCceEEEEEEecC
Q 026858 190 MCAEVFLIEKVPHEDLHPDYG--YEETDVYILRKKK 223 (232)
Q Consensus 190 ~~~~~f~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 223 (232)
.+-+.+.++.+-.-. ...|. .-...++.+.+..
T Consensus 200 ~ll~~~~i~aVI~Lp-~~~F~~t~v~t~ilil~k~~ 234 (311)
T PF02384_consen 200 YLLENGYIEAVISLP-SNLFKPTGVPTSILILNKKK 234 (311)
T ss_dssp HHHHHEEEEEEEE---TTSSSSSSS-EEEEEEEESS
T ss_pred HHHhhchhhEEeecc-cceecccCcCceEEEEeecc
Confidence 555545555443221 11232 2234566666655
No 211
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.05 E-value=4e-05 Score=63.74 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=73.5
Q ss_pred CCCcEEEeCccccH--HH--HHHHHh-------CCCcEEEEcchh-HHHHHHHH------HHhcC---------------
Q 026858 67 TRRRAIELGAGCGA--AG--MAFYLL-------GLADIVLTDISP-VMPALKHN------LKRNK--------------- 113 (232)
Q Consensus 67 ~~~~VLElGcGtG~--~s--~~la~~-------~~~~v~~~D~s~-~~~~~~~n------~~~~~--------------- 113 (232)
.+++|.-.||+||- .| +.+... .. +|+++|+|. ++..++.- ..++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~-~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRV-KILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCce-EEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 46799999999997 33 333332 24 899999997 34433321 10110
Q ss_pred -----CCCCCceEEEEeecCCCcccccCCCCccEEEEcccC-C-CcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 114 -----PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV-Y-IEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 114 -----~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~-~-~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
..+...|.|...+...... ..+.||+|+|-+++ | ....-..++..++..|+|||.+++.....
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 0012346677776655542 35679999999988 4 55678889999999999999999986433
No 212
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.03 E-value=1.5e-05 Score=64.07 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=83.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.+. +|||-..|-|..++.+++.|+.+|..++.++ ++..+.-|...... ....+.....|.-+.- -...+.+||.|
T Consensus 134 ~G~--rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V-~~~~D~sfDaI 209 (287)
T COG2521 134 RGE--RVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVV-KDFDDESFDAI 209 (287)
T ss_pred cCC--EeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHH-hcCCccccceE
Confidence 577 9999999999999999999998999999998 34444444332221 1112333333321111 11234579999
Q ss_pred EEcccCCCcc---cHHHHHHHHHHhhCCCcEEEEEE-----eecChhHHHHHHHHHhc-CceEEE
Q 026858 144 IAADVVYIEE---SAAQLVRAMEALVADDGVVLLGY-----QLRSPEAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 144 i~~~~~~~~~---~~~~~l~~l~~~l~pgG~l~i~~-----~~r~~~~~~~~~~~~~~-~f~~~~ 199 (232)
|-.++=++.. --+.+.++++++|+|||+++.-. ..|..+......+.+.+ +|.+..
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence 9644433222 23567788999999999998853 22333445566666665 897543
No 213
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.99 E-value=0.00087 Score=53.88 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=93.3
Q ss_pred cceeechHHH-HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHH
Q 026858 30 GTSVWPCSLV-LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPAL 105 (232)
Q Consensus 30 g~~~W~~~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~ 105 (232)
..|+|.--.- |+..+..-.. .+...++. +||-||+.+|.+-.+++.. + -+.|++++.|+ .++.+
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~----------~~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL 114 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLE----------NIPIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDL 114 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S------------S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHH
T ss_pred ceeecCchhhHHHHHHHcCcc----------ccCCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHH
Confidence 6789975433 6665554332 11256788 9999999999988888765 3 45899999998 34433
Q ss_pred HHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh----
Q 026858 106 KHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP---- 181 (232)
Q Consensus 106 ~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~---- 181 (232)
..-++.. .++...--|...+......-+..|+|++ |+. .+.+..-++.+....||+||.++++-+.|.-
T Consensus 115 ~~la~~R-----~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~ 187 (229)
T PF01269_consen 115 LNLAKKR-----PNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTA 187 (229)
T ss_dssp HHHHHHS-----TTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSS
T ss_pred HHHhccC-----CceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcC
Confidence 3222221 1245556666666655445568999996 444 5577888999999999999999998765431
Q ss_pred hHHHHH---HHHHhc-CceEEEe
Q 026858 182 EAHKLF---WEMCAE-VFLIEKV 200 (232)
Q Consensus 182 ~~~~~~---~~~~~~-~f~~~~~ 200 (232)
...+.| .+.++. +|++.+.
T Consensus 188 ~p~~vf~~e~~~L~~~~~~~~e~ 210 (229)
T PF01269_consen 188 DPEEVFAEEVKKLKEEGFKPLEQ 210 (229)
T ss_dssp SHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCChheE
Confidence 123333 334444 7887544
No 214
>PRK00536 speE spermidine synthase; Provisional
Probab=97.97 E-value=0.00016 Score=60.09 Aligned_cols=115 Identities=9% Similarity=0.054 Sum_probs=75.1
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+||=||.|-|.+...+.+... +|+++|+++ +++.+++-..... ..-.+++..... + . ....++||+||+ |
T Consensus 75 ~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~---~--~~~~~~fDVIIv-D 146 (262)
T PRK00536 75 EVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L---L--DLDIKKYDLIIC-L 146 (262)
T ss_pred eEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h---h--hccCCcCCEEEE-c
Confidence 999999999999999998875 999999998 4555555222211 112344444431 1 1 111357999997 4
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEe--ecChhHHHHHHHHHhcCce
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQ--LRSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~--~r~~~~~~~~~~~~~~~f~ 196 (232)
.++. +.+.+.+++.|+|||.++.-.. ..+........+.++..|.
T Consensus 147 s~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~ 193 (262)
T PRK00536 147 QEPD----IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS 193 (262)
T ss_pred CCCC----hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence 4432 5677899999999999988432 2223334555556666675
No 215
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00054 Score=59.37 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=99.3
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceee---chH----HHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVW---PCS----LVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGA 80 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W---~~~----~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~ 80 (232)
-|++.+....++|--+.++.+--.|=| .+. ..|+.-|..... ..++. .++|==||+|.
T Consensus 140 ~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~lag-------------w~~~~--pl~DPmCGSGT 204 (381)
T COG0116 140 RINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLAG-------------WKPDE--PLLDPMCGSGT 204 (381)
T ss_pred EEEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHHcC-------------CCCCC--ccccCCCCccH
Confidence 677778888888888876433333333 222 234444444444 44566 89999999999
Q ss_pred HHHHHHHhCC------C----------------------------------cEEEEcchh-HHHHHHHHHHhcCCCCCCc
Q 026858 81 AGMAFYLLGL------A----------------------------------DIVLTDISP-VMPALKHNLKRNKPVLNKS 119 (232)
Q Consensus 81 ~s~~la~~~~------~----------------------------------~v~~~D~s~-~~~~~~~n~~~~~~~~~~~ 119 (232)
+.+.+|..+. . .+++.|+++ +++.++.|++..+ +.+.
T Consensus 205 i~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AG--v~d~ 282 (381)
T COG0116 205 ILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAG--VGDL 282 (381)
T ss_pred HHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcC--CCce
Confidence 9998887642 0 278999999 6788888988877 6677
Q ss_pred eEEEEeecCCCcccccCCCCccEEEEcccCC----CcccHHHHHH----HHHHhhCCCcEEEEEE
Q 026858 120 LKTSVLYWNNQDQINALKPPFDLVIAADVVY----IEESAAQLVR----AMEALVADDGVVLLGY 176 (232)
Q Consensus 120 i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~----~~~~~~~~l~----~l~~~l~pgG~l~i~~ 176 (232)
|.+.+.|...... ..+.+|+||++++.. ....+..+.+ .+++.++.-++.+++.
T Consensus 283 I~f~~~d~~~l~~---~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 283 IEFKQADATDLKE---PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred EEEEEcchhhCCC---CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 8999998876653 115799999987763 2223333333 4445555566666665
No 216
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.96 E-value=8.6e-05 Score=61.07 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=56.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..+.. .|||+|.|||.++..+...+. +|+++++++. +....+.. ++....+++++...|+-..+ ...||
T Consensus 56 ~k~tD--~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv--~gtp~~~kLqV~~gD~lK~d-----~P~fd 125 (315)
T KOG0820|consen 56 LKPTD--VVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRV--QGTPKSGKLQVLHGDFLKTD-----LPRFD 125 (315)
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHh--cCCCccceeeEEecccccCC-----Ccccc
Confidence 44666 999999999999999999887 9999999994 44444422 23234567777777765443 35799
Q ss_pred EEEEcccC
Q 026858 142 LVIAADVV 149 (232)
Q Consensus 142 ~Ii~~~~~ 149 (232)
.+|++-+.
T Consensus 126 ~cVsNlPy 133 (315)
T KOG0820|consen 126 GCVSNLPY 133 (315)
T ss_pred eeeccCCc
Confidence 99975443
No 217
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.92 E-value=0.0011 Score=53.87 Aligned_cols=151 Identities=15% Similarity=0.207 Sum_probs=85.7
Q ss_pred CCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHH
Q 026858 27 MHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPA 104 (232)
Q Consensus 27 ~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~ 104 (232)
+--+...++.+..=+.|+.+.- ...++ +||=+|= --+.|+.+|.. ...+++.+|+++ .+..
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~g--------------dL~gk--~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~f 82 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAERG--------------DLEGK--RILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDF 82 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHTT---------------STT---EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHH
T ss_pred cccccccHHHHHHHHHHHHhcC--------------cccCC--EEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHH
Confidence 3445667788888888888764 34778 9999984 34566666654 345999999999 4677
Q ss_pred HHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCc-EEEEEEeecCh--
Q 026858 105 LKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDG-VVLLGYQLRSP-- 181 (232)
Q Consensus 105 ~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG-~l~i~~~~r~~-- 181 (232)
..+.+.+.+ + .+.....|+.++.+. ...++||+++. ++.|-.+.+..++......|+..| ..+++...+.+
T Consensus 83 I~~~a~~~g--l--~i~~~~~DlR~~LP~-~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~ 156 (243)
T PF01861_consen 83 INRVAEEEG--L--PIEAVHYDLRDPLPE-ELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASP 156 (243)
T ss_dssp HHHHHHHHT------EEEE---TTS---T-TTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--H
T ss_pred HHHHHHHcC--C--ceEEEEecccccCCH-HHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcH
Confidence 777666655 2 268888888877542 23578999996 778888888999988888887655 77776655542
Q ss_pred hHHHHHHHHHhc-CceEEEe
Q 026858 182 EAHKLFWEMCAE-VFLIEKV 200 (232)
Q Consensus 182 ~~~~~~~~~~~~-~f~~~~~ 200 (232)
.....+.+.+.+ +|.++.+
T Consensus 157 ~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 157 DKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp HHHHHHHHHHHTS--EEEEE
T ss_pred HHHHHHHHHHHHCCcCHHHH
Confidence 222233444433 7777665
No 218
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.90 E-value=3.5e-05 Score=60.44 Aligned_cols=118 Identities=15% Similarity=0.207 Sum_probs=63.5
Q ss_pred cEEEeCccccHHHHHHHHhC--CCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLLG--LADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~Ii~~ 146 (232)
+||||||++|..+..+.+.+ ..+++++|+.+.-. ..+...+..++... ........ .....+.+|+|++-
T Consensus 26 ~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~------~~~~~~i~~d~~~~-~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 26 TVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP------LQNVSFIQGDITNP-ENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp EEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------TTEEBTTGGGEEE-EHSHHGGGSHGTTTCSESEEEE-
T ss_pred EEEEcCCcccceeeeeeecccccceEEEEecccccc------ccceeeeecccchh-hHHHhhhhhccccccCcceeccc
Confidence 99999999999999998886 45999999987400 01111122222111 00000000 01112579999974
Q ss_pred ccCCC-----------cccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCce
Q 026858 147 DVVYI-----------EESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 147 ~~~~~-----------~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~ 196 (232)
-.... .......+..+.+.|++||.+++-..... .. ..+...+...|+
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~-~~-~~~~~~l~~~F~ 157 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP-EI-EELIYLLKRCFS 157 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST-TS-HHHHHHHHHHHH
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc-cH-HHHHHHHHhCCe
Confidence 42211 11233344455567899998887554332 22 367777766664
No 219
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.0018 Score=51.24 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=96.8
Q ss_pred ceeechHHH-HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHH
Q 026858 31 TSVWPCSLV-LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKH 107 (232)
Q Consensus 31 ~~~W~~~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~ 107 (232)
.|.|..-.- |+.-+..-+. .+-..+++ +||-||+.+|....+.+.. +.+.+++++.++ .+.....
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~----------~~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~ 118 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLK----------NFPIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLD 118 (231)
T ss_pred eeeeCcchhHHHHHHHcCcc----------cCCcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHH
Confidence 567764332 5555543332 11155788 9999999999988777765 656899999998 4443333
Q ss_pred HHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh----hH
Q 026858 108 NLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP----EA 183 (232)
Q Consensus 108 n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~----~~ 183 (232)
-++.. .++.....|...++.....-+..|+|+. |+ ..+.+.+-+..+....|+++|.++++-+.|.- +.
T Consensus 119 ~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-DV-AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp 191 (231)
T COG1889 119 VAEKR-----PNIIPILEDARKPEKYRHLVEKVDVIYQ-DV-AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP 191 (231)
T ss_pred HHHhC-----CCceeeecccCCcHHhhhhcccccEEEE-ec-CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH
Confidence 22221 1234445565555554445567899885 33 34567788899999999999999998776652 22
Q ss_pred HHHHHH---HH-hcCceEEEec
Q 026858 184 HKLFWE---MC-AEVFLIEKVP 201 (232)
Q Consensus 184 ~~~~~~---~~-~~~f~~~~~~ 201 (232)
.+.|.+ .+ ..+|++.+..
T Consensus 192 ~~vf~~ev~kL~~~~f~i~e~~ 213 (231)
T COG1889 192 EEVFKDEVEKLEEGGFEILEVV 213 (231)
T ss_pred HHHHHHHHHHHHhcCceeeEEe
Confidence 344432 33 3578776654
No 220
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.90 E-value=0.00027 Score=59.26 Aligned_cols=109 Identities=28% Similarity=0.302 Sum_probs=63.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.+... +|||+|||+|.....+... ...+++++|.|+.+....+.+......... ............ .....
T Consensus 31 ~f~P~--~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~----~~~~~ 103 (274)
T PF09243_consen 31 DFRPR--SVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRN-AEWRRVLYRDFL----PFPPD 103 (274)
T ss_pred CCCCc--eEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccccc-chhhhhhhcccc----cCCCC
Confidence 44556 9999999999765544332 456999999999655454445444322111 000000000001 11234
Q ss_pred cEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 141 DLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 141 D~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|+|+++.++. .......+++.+.+.+++ .++++.+...
T Consensus 104 DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 104 DLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred cEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 9999999885 235667777777776665 7777776543
No 221
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.88 E-value=0.00022 Score=59.29 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=81.5
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCC------C----------------CCceEE---
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPV------L----------------NKSLKT--- 122 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~------~----------------~~~i~~--- 122 (232)
+.+||==|||.|.++..+|..|+ .+.+.+.|-.|..+.. ...|... + -..+.+
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~-fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASN-FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHH-HHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 35999999999999999999999 9999999984432222 2222100 0 000111
Q ss_pred -----------EEeecCCCcccccC---CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe----ecC----
Q 026858 123 -----------SVLYWNNQDQINAL---KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ----LRS---- 180 (232)
Q Consensus 123 -----------~~~d~~~~~~~~~~---~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~----~r~---- 180 (232)
..+-.++....-.. .+.||.|+.+..+--..++-..++++.++|||||..+=..+ ...
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~ 214 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIP 214 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCC
Confidence 01111111111111 35799999987776777889999999999999995443321 111
Q ss_pred -----hhHHHHHHHHHhc-CceEEEec
Q 026858 181 -----PEAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 181 -----~~~~~~~~~~~~~-~f~~~~~~ 201 (232)
....+++...... ||++..-.
T Consensus 215 ~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 215 NEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred CCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 1235666776665 89876544
No 222
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.88 E-value=8.2e-05 Score=62.68 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=46.1
Q ss_pred CCcEEEeCccccH-HHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhc-CCCCCCceEEEEeecCCCcccc---cCCCCc
Q 026858 68 RRRAIELGAGCGA-AGMAFYLL-GLADIVLTDISP-VMPALKHNLKRN-KPVLNKSLKTSVLYWNNQDQIN---ALKPPF 140 (232)
Q Consensus 68 ~~~VLElGcGtG~-~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~-~~~~~~~i~~~~~d~~~~~~~~---~~~~~f 140 (232)
.+++||||||... ..+..++. +. +++++|+++ .+..++.|+..| . +..+|......-.. ..+. ...+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~-~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPD-NIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST--SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCcc-ccchhhhccccee
Confidence 4589999999854 45555544 76 999999999 588999999988 5 56777776553211 1111 123479
Q ss_pred cEEEEcccCCCcc
Q 026858 141 DLVIAADVVYIEE 153 (232)
Q Consensus 141 D~Ii~~~~~~~~~ 153 (232)
|+.+|++++|...
T Consensus 179 dftmCNPPFy~s~ 191 (299)
T PF05971_consen 179 DFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEE-----SS-
T ss_pred eEEecCCccccCh
Confidence 9999999998543
No 223
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00063 Score=59.18 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=84.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhC---CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLG---LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~---~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
..++. +|||+.+++|.=+.++|... ...|++.|.++ -+..+..|+++.+.. + +.....|-..........+
T Consensus 154 p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~--n-v~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 154 PKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR--N-VIVVNKDARRLAELLPGGE 228 (355)
T ss_pred CCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC--c-eEEEecccccccccccccC
Confidence 34677 99999999999776666652 22579999998 488888998887632 2 3444444332222111122
Q ss_pred CccEEEEcccCCCc-------c---------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHH-HHHHHHHhc--
Q 026858 139 PFDLVIAADVVYIE-------E---------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAH-KLFWEMCAE-- 193 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~-------~---------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~-~~~~~~~~~-- 193 (232)
+||.|++-.+.... + .-..++....++++|||+++.++-...++.- +.....+.+
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~ 308 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP 308 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC
Confidence 59999984443211 1 2456778888899999999998766665433 333344443
Q ss_pred CceEEEe
Q 026858 194 VFLIEKV 200 (232)
Q Consensus 194 ~f~~~~~ 200 (232)
+|....+
T Consensus 309 ~~~~~~~ 315 (355)
T COG0144 309 DFELEPV 315 (355)
T ss_pred Cceeecc
Confidence 4555444
No 224
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.001 Score=52.93 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=87.1
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CC-CcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----CC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GL-ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA----LK 137 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~-~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~----~~ 137 (232)
.++. .|+||||-+|..+..+++. +. ..|+++|+.++ . ....+.+.+.|+........ ..
T Consensus 44 ~~~~--~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~----~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGM--VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------K----PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCC--EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------c----cCCCceEEeeeccCccHHHHHHHHcC
Confidence 4667 9999999999999999887 22 25999999872 1 11226888888887764322 22
Q ss_pred C-CccEEEEcccC--C--Cc-------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCCC
Q 026858 138 P-PFDLVIAADVV--Y--IE-------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDL 205 (232)
Q Consensus 138 ~-~fD~Ii~~~~~--~--~~-------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~~ 205 (232)
+ .+|+|++-... . .. .....++.....+|+|||.+++-...- ...+.++..+...|....+....
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg--~~~~~~l~~~~~~F~~v~~~KP~- 185 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG--EDFEDLLKALRRLFRKVKIFKPK- 185 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC--CCHHHHHHHHHHhhceeEEecCc-
Confidence 2 47999963222 1 11 123445555667889999998854322 23567777787777655554321
Q ss_pred CCCCCCCceEEEEEEec
Q 026858 206 HPDYGYEETDVYILRKK 222 (232)
Q Consensus 206 ~~~~~~~~~~l~~~~~~ 222 (232)
..+.....+|.+.+.
T Consensus 186 --aSR~~S~E~y~v~~~ 200 (205)
T COG0293 186 --ASRKRSREIYLVAKG 200 (205)
T ss_pred --cccCCCceEEEEEec
Confidence 123444466666554
No 225
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.80 E-value=1.8e-05 Score=62.57 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=66.6
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+.++||||+|-|-++..++..- .+|++++.|..|....+....| .....+|.+. +-+||+|.|.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~yn--------Vl~~~ew~~t------~~k~dli~clN 177 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKNYN--------VLTEIEWLQT------DVKLDLILCLN 177 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcCCc--------eeeehhhhhc------CceeehHHHHH
Confidence 4699999999999998887653 4899999998555443322211 1223344322 23699999988
Q ss_pred cCCCcccHHHHHHHHHHhhCC-CcEEEEE
Q 026858 148 VVYIEESAAQLVRAMEALVAD-DGVVLLG 175 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~p-gG~l~i~ 175 (232)
.+.--.+.-.+++.++.++.| +|+++++
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 876556778899999999998 8998875
No 226
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.79 E-value=0.00029 Score=64.15 Aligned_cols=108 Identities=7% Similarity=0.009 Sum_probs=71.8
Q ss_pred CcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 69 RRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
..+||||||.|-..+.+|.. +-..++|+|+.. .+..+.+.+...+ + .++.+...++..... ...++++|.|..+
T Consensus 349 p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~--l-~N~~~~~~~~~~~~~-~~~~~sv~~i~i~ 424 (506)
T PRK01544 349 KVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN--I-TNFLLFPNNLDLILN-DLPNNSLDGIYIL 424 (506)
T ss_pred ceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC--C-CeEEEEcCCHHHHHH-hcCcccccEEEEE
Confidence 38999999999999888876 334899999987 3444444433332 2 223444333221111 1124579999987
Q ss_pred ccCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 147 DVVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 147 ~~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
.+-=|++ .-+.++..+++.|+|||.+.+.+....
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 6654443 357789999999999999999875544
No 227
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.78 E-value=0.00026 Score=59.41 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=67.2
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCC-CCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKP-VLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||-||.|.|.+...+.+. ...+++++|+++. ++.+++-...-.. ...+++.....|..+.. .....+||+|++
T Consensus 79 ~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v--~~~~~~fDvIi~- 155 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL--RDCEEKFDVIIV- 155 (282)
T ss_pred eEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH--HhCCCcCCEEEE-
Confidence 9999999999999888877 4569999999995 5555553322211 11244444444322211 112237999997
Q ss_pred ccCCCcc-----cHHHHHHHHHHhhCCCcEEEEE
Q 026858 147 DVVYIEE-----SAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 147 ~~~~~~~-----~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|+.-... .-..+.+.++++|+++|.++.-
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 3322211 2377899999999999999886
No 228
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00023 Score=58.78 Aligned_cols=77 Identities=13% Similarity=-0.021 Sum_probs=52.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC--Cc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP--PF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~--~f 140 (232)
..++. +|||||+|.|.++..+++.+. +|+++++++.+....++... ...+++....|.-..+- .. .+
T Consensus 28 ~~~~d--~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~----~~l~~~ 96 (259)
T COG0030 28 ISPGD--NVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDF----PSLAQP 96 (259)
T ss_pred CCCCC--eEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcc----hhhcCC
Confidence 33566 999999999999999999987 89999999954333332221 12345777776655442 12 67
Q ss_pred cEEEEcccCC
Q 026858 141 DLVIAADVVY 150 (232)
Q Consensus 141 D~Ii~~~~~~ 150 (232)
+.|+++-+.+
T Consensus 97 ~~vVaNlPY~ 106 (259)
T COG0030 97 YKVVANLPYN 106 (259)
T ss_pred CEEEEcCCCc
Confidence 8888765554
No 229
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.76 E-value=0.00029 Score=56.68 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=71.4
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---cccC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---INAL 136 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~~~ 136 (232)
....+ ++||||.=||..++..|.. .-++|+++|+++. .+....-.+..+ ...+|.+.........+ ....
T Consensus 71 ~~~ak--~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 71 LLNAK--RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEGPALESLDELLADGE 146 (237)
T ss_pred HhCCc--eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeecchhhhHHHHHhcCC
Confidence 34567 9999999999988877765 3349999999983 444333333333 44566776665433321 1123
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.+.||.++.-. +-.......+.+-+++++||.|++-
T Consensus 147 ~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 147 SGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence 46799999742 3334457888999999999999884
No 230
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.72 E-value=0.00086 Score=55.36 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=75.9
Q ss_pred cEEEeCccccHHHHHHHHhC-CCcEEEEcchhH-HHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCC-CccEEEE
Q 026858 70 RAIELGAGCGAAGMAFYLLG-LADIVLTDISPV-MPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKP-PFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~-~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~-~fD~Ii~ 145 (232)
+||=||.|.|.+...+.+.. ..+++++|+++. ++.+++-..... ....+++.....|..... ..... +||+|+.
T Consensus 79 ~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l--~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 79 RVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFL--KETQEEKYDVIIV 156 (246)
T ss_dssp EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH--HTSSST-EEEEEE
T ss_pred ceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHH--HhccCCcccEEEE
Confidence 99999999999988887764 569999999995 555555333221 112345566555432211 11234 8999997
Q ss_pred cccC--CCcc--cHHHHHHHHHHhhCCCcEEEEEEeecC--hhHHHHHHHHHhcCce
Q 026858 146 ADVV--YIEE--SAAQLVRAMEALVADDGVVLLGYQLRS--PEAHKLFWEMCAEVFL 196 (232)
Q Consensus 146 ~~~~--~~~~--~~~~~l~~l~~~l~pgG~l~i~~~~r~--~~~~~~~~~~~~~~f~ 196 (232)
-..- .... --..+++.+++.|+|+|.+++-..... +.......+.++..|.
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 157 DLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp ESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred eCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 2211 1111 236788999999999999998653332 3334445556666554
No 231
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0026 Score=52.49 Aligned_cols=103 Identities=10% Similarity=0.063 Sum_probs=71.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..|+. +|||-|+|+|.++..+++. .-++++..|..+. ...+++..+..+ +.+.+.+..-|+..... ...+..
T Consensus 103 i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~GF-~~ks~~ 177 (314)
T KOG2915|consen 103 IRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSGF-LIKSLK 177 (314)
T ss_pred CCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCCc-cccccc
Confidence 56889 9999999999999999987 4469999999873 444445445444 66778888888766542 112456
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+|.|++. .. ..-.++..+.++++.+|.-+++
T Consensus 178 aDaVFLD-lP----aPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 178 ADAVFLD-LP----APWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cceEEEc-CC----ChhhhhhhhHHHhhhcCceEEe
Confidence 8999873 32 2334566677788877654444
No 232
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.64 E-value=0.0017 Score=47.74 Aligned_cols=105 Identities=25% Similarity=0.261 Sum_probs=61.9
Q ss_pred EEEeCccccHHHHHHHHhCC--CcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC-CCccEEEEcc
Q 026858 71 AIELGAGCGAAGMAFYLLGL--ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK-PPFDLVIAAD 147 (232)
Q Consensus 71 VLElGcGtG~~s~~la~~~~--~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~fD~Ii~~~ 147 (232)
++|+|||+|... .++.... ..++++|.++.+........... .... +.+...+.... ..+... ..||++ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-GLGL-VDFVVADALGG-VLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-CCCc-eEEEEeccccC-CCCCCCCCceeEE-eee
Confidence 999999999976 4443321 27888999984322222111111 1100 34455544431 011122 379999 444
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
...+.......+..+.+.++|+|.+++......
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 443222278899999999999999998875543
No 233
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.56 E-value=0.0014 Score=56.14 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=63.9
Q ss_pred cEEEeCccccHHHHH-HHHh-----CCCcEEEEcchh-HHHHHHHHHH-hcCCCCCCceEEEEeecCCCcc-cc--cCCC
Q 026858 70 RAIELGAGCGAAGMA-FYLL-----GLADIVLTDISP-VMPALKHNLK-RNKPVLNKSLKTSVLYWNNQDQ-IN--ALKP 138 (232)
Q Consensus 70 ~VLElGcGtG~~s~~-la~~-----~~~~v~~~D~s~-~~~~~~~n~~-~~~~~~~~~i~~~~~d~~~~~~-~~--~~~~ 138 (232)
.++|+|||+|.-+.. +... .. +++.+|+|. .++.+..++. ...+.+ .+.-...|+.+... .+ ....
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~-~Y~plDIS~~~L~~a~~~L~~~~~p~l--~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSV-DYYALDVSRSELQRTLAELPLGNFSHV--RCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCc-eEEEEECCHHHHHHHHHhhhhccCCCe--EEEEEEecHHHHHhhcccccccC
Confidence 899999999985433 3222 34 899999998 5666666665 232221 12224444444321 11 1122
Q ss_pred CccEEEEcc-cCC--CcccHHHHHHHHHH-hhCCCcEEEEEE
Q 026858 139 PFDLVIAAD-VVY--IEESAAQLVRAMEA-LVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~-~~~--~~~~~~~~l~~l~~-~l~pgG~l~i~~ 176 (232)
...+++... .+. .+.....+++.+++ .|+||+.+++..
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 356666543 453 45567788899999 999999999963
No 234
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.54 E-value=0.0014 Score=52.36 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=76.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
...+. +||++|-|.|+..-.+......+-+.++..+ +++.++.+.... ..++......|.+..+-- .++.||
T Consensus 99 ~tkgg--rvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e----k~nViil~g~WeDvl~~L-~d~~FD 171 (271)
T KOG1709|consen 99 STKGG--RVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE----KENVIILEGRWEDVLNTL-PDKHFD 171 (271)
T ss_pred hhCCc--eEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc----ccceEEEecchHhhhccc-cccCcc
Confidence 34677 9999999999988877776555777788887 455555544333 345677788887754311 245799
Q ss_pred EEEEcccC-CCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVV-YIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~-~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
-|+- +.+ ...+++..+.+.+.++|||+|.+-++-
T Consensus 172 GI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 172 GIYY-DTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eeEe-echhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 9985 444 345778888899999999999887653
No 235
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00054 Score=61.06 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=85.7
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCC
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKP 114 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~ 114 (232)
.+..|=.++.+++. ...++ .+||+-||||..++.+|+. +.+|+++++++ ++..++.|++.|+.
T Consensus 367 ~aevLys~i~e~~~-------------l~~~k--~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi 430 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAG-------------LPADK--TLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI 430 (534)
T ss_pred HHHHHHHHHHHHhC-------------CCCCc--EEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc
Confidence 46678888888877 55778 9999999999999999985 45999999998 68899999999874
Q ss_pred CCCCceEEEEeecCCCc-cccc-CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 115 VLNKSLKTSVLYWNNQD-QINA-LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 115 ~~~~~i~~~~~d~~~~~-~~~~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
.. ..|......+.- .+.. .-+.=++|...++.. ......++..+.+.-++.-.+++++..+
T Consensus 431 sN---a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 431 SN---ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred cc---eeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCHH
Confidence 42 344444111111 0000 012345555555544 3455677778888777888888887654
No 236
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.53 E-value=0.00068 Score=56.60 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=58.6
Q ss_pred cEEEeCccc-cHHHHHHHHh---CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGC-GAAGMAFYLL---GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGt-G~~s~~la~~---~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|+=||||+ -+.++.+++. +. .++++|+++. ....++-.. ....+..++.+...|...... ....||+|+
T Consensus 123 rVaFIGSGPLPlT~i~la~~~~~~~-~v~~iD~d~~A~~~a~~lv~-~~~~L~~~m~f~~~d~~~~~~---dl~~~DvV~ 197 (276)
T PF03059_consen 123 RVAFIGSGPLPLTSIVLAKQHGPGA-RVHNIDIDPEANELARRLVA-SDLGLSKRMSFITADVLDVTY---DLKEYDVVF 197 (276)
T ss_dssp EEEEE---SS-HHHHHHH--HTT---EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-G---G----SEEE
T ss_pred eEEEEcCCCcchHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHh-hcccccCCeEEEecchhcccc---ccccCCEEE
Confidence 899999998 6677777754 34 7999999984 444433333 112245667888777643321 125799999
Q ss_pred EcccCC-CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 145 AADVVY-IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 145 ~~~~~~-~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+..+. ..+.-..++.++.+.++||..+++-.
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 887775 55677889999999999999988864
No 237
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.50 E-value=0.00023 Score=55.59 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=61.7
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE--c
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA--A 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~--~ 146 (232)
.+.|||+|+|.+++.+|+. +.+|++++.++- ...+.+|+..++. .++.....|...-+ -...|+|+| .
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~---~n~evv~gDA~~y~-----fe~ADvvicEml 105 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD---VNWEVVVGDARDYD-----FENADVVICEML 105 (252)
T ss_pred ceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC---cceEEEeccccccc-----ccccceeHHHHh
Confidence 8999999999999999987 569999999993 4444555433321 22444444432222 134688886 2
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
+...-.+...+.+..+.+.|+.++.++
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 222333445566777777888877765
No 238
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.38 E-value=0.00087 Score=50.45 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=44.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHH-----h-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYL-----L-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~-----~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 137 (232)
+.. +|+|+|||-|.++..++. . +. +|+++|.++. .+.+....+.........+.+...+..... ..
T Consensus 25 ~~~--~vvD~GsG~GyLs~~La~~l~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 97 (141)
T PF13679_consen 25 RCI--TVVDLGSGKGYLSRALAHLLCNSSPNL-RVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES----SS 97 (141)
T ss_pred CCC--EEEEeCCChhHHHHHHHHHHHhcCCCC-eEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc----cc
Confidence 445 999999999999999988 4 45 9999999984 444443333332222233344444332221 13
Q ss_pred CCccEEEE
Q 026858 138 PPFDLVIA 145 (232)
Q Consensus 138 ~~fD~Ii~ 145 (232)
...++++.
T Consensus 98 ~~~~~~vg 105 (141)
T PF13679_consen 98 DPPDILVG 105 (141)
T ss_pred CCCeEEEE
Confidence 45677765
No 239
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.36 E-value=0.0011 Score=49.58 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=43.1
Q ss_pred cEEEeCccccHHHHHHHHhCCC-cEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCC
Q 026858 70 RAIELGAGCGAAGMAFYLLGLA-DIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNN 129 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~-~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~ 129 (232)
+|||+|||.|..+..+++.+.. +++++|.++ ....+++|+..|.. .++.+....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence 4899999999999999887542 799999998 46678888877752 125666665544
No 240
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.35 E-value=0.02 Score=49.27 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=58.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.++. ++|||||++|..+..+.+.|. +|+++|..++-.. +.. .++|.....+--.... ..+.+|++
T Consensus 210 ~~g~--~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~----L~~-----~~~V~h~~~d~fr~~p---~~~~vDwv 274 (357)
T PRK11760 210 APGM--RAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQS----LMD-----TGQVEHLRADGFKFRP---PRKNVDWL 274 (357)
T ss_pred CCCC--EEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHh----hhC-----CCCEEEEeccCcccCC---CCCCCCEE
Confidence 4777 999999999999999999998 9999997763222 111 1234444443222211 14579999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCC--cEEEEEEe
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADD--GVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pg--G~l~i~~~ 177 (232)
++ |+...+ ..+.+.+.+.+..| ...++.-+
T Consensus 275 Vc-Dmve~P---~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 275 VC-DMVEKP---ARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred EE-ecccCH---HHHHHHHHHHHhcCcccEEEEEEE
Confidence 97 554433 34555566666544 34555433
No 241
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.34 E-value=0.00018 Score=57.50 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=73.0
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~Ii~~~ 147 (232)
.|+|..||.|-.++..|..++ .|+++|++++ +..+++|++.-+ +.++|.+.+.||-+.....+. ...+|+|..++
T Consensus 97 ~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYG--I~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYG--VPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeec--CCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 899999999998888888888 9999999996 777778877766 566999999998665432222 23478888887
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcE
Q 026858 148 VVYIEESAAQLVRAMEALVADDGV 171 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~ 171 (232)
+-..++-...-+-.+...+.|.|.
T Consensus 174 pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 174 PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CCCCcchhhhhhhhhhhhcchhHH
Confidence 776665555555555566655543
No 242
>PRK10742 putative methyltransferase; Provisional
Probab=97.22 E-value=0.0015 Score=53.61 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=52.2
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCC--C----CCCceEEEEeecCCCcccccCCCCcc
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKP--V----LNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~--~----~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++|||+-+|+|..++.++..|+ +|+++|.++. ...++.+++.... . +..+++....|..... ......||
T Consensus 90 p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L--~~~~~~fD 166 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL--TDITPRPQ 166 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH--hhCCCCCc
Confidence 4899999999999999999999 6999999995 5566667665311 1 1133444444432221 11234799
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
+|++ |+.|
T Consensus 167 VVYl-DPMf 174 (250)
T PRK10742 167 VVYL-DPMF 174 (250)
T ss_pred EEEE-CCCC
Confidence 9997 4444
No 243
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.22 E-value=6e-05 Score=53.70 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=38.8
Q ss_pred EEeCccccHHHHHHHHh----CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccEEEEc
Q 026858 72 IELGAGCGAAGMAFYLL----GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDLVIAA 146 (232)
Q Consensus 72 LElGcGtG~~s~~la~~----~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~Ii~~ 146 (232)
||+|+..|..++.+++. +..+++++|..+.....++..+... ...++.+...+.... ++.. .++||+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~--~~~~~~~~~g~s~~~--l~~~~~~~~dli~i- 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAG--LSDRVEFIQGDSPDF--LPSLPDGPIDLIFI- 75 (106)
T ss_dssp --------------------------EEEESS------------GG--G-BTEEEEES-THHH--HHHHHH--EEEEEE-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcC--CCCeEEEEEcCcHHH--HHHcCCCCEEEEEE-
Confidence 79999999988777653 2237999998873112222222211 334466666654221 1122 368999997
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|.-|..+.....++.+.+.|+|||.+++-
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 44444566677788888889999988764
No 244
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.22 E-value=0.003 Score=50.64 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=71.4
Q ss_pred EEEeCccccHHHHHHHHhC-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC-CccEEEEcc
Q 026858 71 AIELGAGCGAAGMAFYLLG-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP-PFDLVIAAD 147 (232)
Q Consensus 71 VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~fD~Ii~~~ 147 (232)
|.|+||.-|.+++.+.+.+ +.+++++|+++. +..++.++...+ +..++.+...|--... ..+ ..|.|+.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~~l----~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLEVL----KPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG------GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCccccc----CCCCCCCEEEEec
Confidence 6899999999999999885 458999999995 888888888776 5566766666422211 112 368888765
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
+ ....+...++.....++....+++ .+..+ ...+.+.+. .+|.+..-
T Consensus 75 M--GG~lI~~ILe~~~~~~~~~~~lIL-qP~~~---~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 75 M--GGELIIEILEAGPEKLSSAKRLIL-QPNTH---AYELRRWLYENGFEIIDE 122 (205)
T ss_dssp E---HHHHHHHHHHTGGGGTT--EEEE-EESS----HHHHHHHHHHTTEEEEEE
T ss_pred C--CHHHHHHHHHhhHHHhccCCeEEE-eCCCC---hHHHHHHHHHCCCEEEEe
Confidence 3 334555566655555555445554 44444 234555554 48887654
No 245
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.22 E-value=0.00078 Score=58.55 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=72.6
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH--HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV--MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~--~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
+++. .++++|||.|-++..++..+...++++|.++- ......+.... +..+-.+...+..+.+ ..+..||
T Consensus 109 ~~~~--~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~~~~~~~~~---fedn~fd 180 (364)
T KOG1269|consen 109 FPGS--KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY---LDNKCNFVVADFGKMP---FEDNTFD 180 (364)
T ss_pred cccc--cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH---hhhhcceehhhhhcCC---CCccccC
Confidence 4566 79999999999999998875449999999872 11111111111 1111122333333332 2456899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.+-+.+..-+..+...++++++++++|||..+.-
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999989999999999999999999998874
No 246
>PHA01634 hypothetical protein
Probab=97.12 E-value=0.003 Score=46.30 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=42.5
Q ss_pred cccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcC
Q 026858 62 LDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNK 113 (232)
Q Consensus 62 ~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~ 113 (232)
+...++ +|+|||++.|..++.++..|+++|++.+.++- .+..+.|++.+.
T Consensus 25 idvk~K--tV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 25 LNVYQR--TIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred eeecCC--EEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 356888 99999999999999999999999999999984 456666777664
No 247
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.12 E-value=0.004 Score=55.41 Aligned_cols=100 Identities=19% Similarity=0.270 Sum_probs=69.0
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHH-HHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPAL-KHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~-~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
++|.+|||..-++..+-..|+..++.+|+|++ +..+ ..+...+ ..+.+...|.... ...+++||+|+.-.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-----~~~~~~~~d~~~l---~fedESFdiVIdkG 122 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-----PEMQMVEMDMDQL---VFEDESFDIVIDKG 122 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-----cceEEEEecchhc---cCCCcceeEEEecC
Confidence 89999999999999998889999999999995 3322 2332211 2234444444332 33567899999754
Q ss_pred cCC----------CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 148 VVY----------IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 148 ~~~----------~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
.+. +.......+..+.+++++||+.+....
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 442 223456677889999999999777654
No 248
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.10 E-value=0.0036 Score=52.12 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=58.5
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. .|||+|+|+|.++..++..+ .+++++|.++. ......... ...++.....|+-..............
T Consensus 29 ~~~~--~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-----~~~~~~vi~~D~l~~~~~~~~~~~~~~ 100 (262)
T PF00398_consen 29 SEGD--TVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-----SNPNVEVINGDFLKWDLYDLLKNQPLL 100 (262)
T ss_dssp GTTS--EEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-----TCSSEEEEES-TTTSCGGGHCSSSEEE
T ss_pred CCCC--EEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-----hcccceeeecchhccccHHhhcCCceE
Confidence 3566 99999999999999999888 49999999994 333333222 234567888776655432222234556
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCC
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVAD 168 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~p 168 (232)
|+++-+ |. .-..++..+...-+.
T Consensus 101 vv~NlP-y~--is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 101 VVGNLP-YN--ISSPILRKLLELYRF 123 (262)
T ss_dssp EEEEET-GT--GHHHHHHHHHHHGGG
T ss_pred EEEEec-cc--chHHHHHHHhhcccc
Confidence 776544 42 223455555554344
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.10 E-value=0.0038 Score=52.61 Aligned_cols=148 Identities=20% Similarity=0.189 Sum_probs=90.5
Q ss_pred eeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHH
Q 026858 32 SVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHN 108 (232)
Q Consensus 32 ~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n 108 (232)
.+++.+-.++..+.. ..++. .|||+.+++|.=+..++.. +.+.+++.|+++ -+..+..|
T Consensus 68 ~vQd~sS~l~~~~L~----------------~~~~~--~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~ 129 (283)
T PF01189_consen 68 YVQDESSQLVALALD----------------PQPGE--RVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKEN 129 (283)
T ss_dssp EEHHHHHHHHHHHHT----------------TTTTS--EEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHH
T ss_pred Eeccccccccccccc----------------ccccc--cccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHH
Confidence 466666666665543 23667 8999999999977777765 345999999998 47788888
Q ss_pred HHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc-------c---------------cHHHHHHHHHHhh
Q 026858 109 LKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE-------E---------------SAAQLVRAMEALV 166 (232)
Q Consensus 109 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~-------~---------------~~~~~l~~l~~~l 166 (232)
+++.+.. .+.....|...... ......||.|++-.+.... + .-..++++..+.+
T Consensus 130 ~~r~g~~---~v~~~~~D~~~~~~-~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~ 205 (283)
T PF01189_consen 130 LKRLGVF---NVIVINADARKLDP-KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLL 205 (283)
T ss_dssp HHHTT-S---SEEEEESHHHHHHH-HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCE
T ss_pred HHhcCCc---eEEEEeeccccccc-cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhh
Confidence 8776533 23444333222210 0112359999984433211 1 2456778889999
Q ss_pred ----CCCcEEEEEEeecChhH-HHHHHHHHh--cCceEEEec
Q 026858 167 ----ADDGVVLLGYQLRSPEA-HKLFWEMCA--EVFLIEKVP 201 (232)
Q Consensus 167 ----~pgG~l~i~~~~r~~~~-~~~~~~~~~--~~f~~~~~~ 201 (232)
+|||+++.++-.-.+.. +......++ ..|....+.
T Consensus 206 ~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~~~ 247 (283)
T PF01189_consen 206 NIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVPIP 247 (283)
T ss_dssp HHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEECCE
T ss_pred cccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 99999999864433322 222222233 256665544
No 250
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.033 Score=43.75 Aligned_cols=122 Identities=14% Similarity=0.107 Sum_probs=69.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc----cccC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ----INAL 136 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~----~~~~ 136 (232)
..++. +|||+||.+|..+..+.+. +.+.|.++|+-... . ..+-..+...|+.+... ++..
T Consensus 67 l~p~~--~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-------p-----~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPED--TVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-------P-----PEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCC--EEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-------C-----CCCcccccccccCCHHHHHHHHHhC
Confidence 34777 9999999999999888765 45589999974310 0 00001122224444331 1111
Q ss_pred -CCCccEEEEcccCCCc-----ccHHHHHHHHHHh-------hCCCcEEEEEEeecChhHHHHHHHHHhcCce-EEEec
Q 026858 137 -KPPFDLVIAADVVYIE-----ESAAQLVRAMEAL-------VADDGVVLLGYQLRSPEAHKLFWEMCAEVFL-IEKVP 201 (232)
Q Consensus 137 -~~~fD~Ii~~~~~~~~-----~~~~~~l~~l~~~-------l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~-~~~~~ 201 (232)
....|+|++ +..... .+....++-+..+ +.|+|.+++-...-. ....|...+.+.|+ ++.+.
T Consensus 133 p~r~VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~--e~~~l~r~l~~~f~~Vk~vK 208 (232)
T KOG4589|consen 133 PNRPVDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS--EEALLQRRLQAVFTNVKKVK 208 (232)
T ss_pred CCCcccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC--chHHHHHHHHHHhhhcEeeC
Confidence 235899986 444322 3455555555443 379999887543222 24566666766674 55554
No 251
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0038 Score=53.40 Aligned_cols=109 Identities=21% Similarity=0.303 Sum_probs=70.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc----c-c
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----N-A 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~-~ 135 (232)
.+..+ +|||+|.|+|.-...+... ....++.++.|+.+...-..+..|. .....+|...+-. + .
T Consensus 111 dfapq--siLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv-------~t~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 111 DFAPQ--SILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV-------STEKTDWRASDVTEDRLSLP 181 (484)
T ss_pred CcCcc--hhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc-------ccccCCCCCCccchhccCCC
Confidence 55667 8999999998654443332 2346777778876655555555543 2223444443210 0 1
Q ss_pred CCCCccEEEEcccCC---CcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 136 LKPPFDLVIAADVVY---IEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~---~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
....|+++++.+-+. ....+...++.+..+++|||.++++...-.
T Consensus 182 ~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 182 AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 234689888877664 334566688999999999999999986554
No 252
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.90 E-value=0.03 Score=47.03 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=66.5
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|+||.||.|.++..+.+.|+..+.++|+++. ....+. |.+.. ....|+.+..... ..+.+|+++.+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~----N~~~~-----~~~~Di~~~~~~~-~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEA----NFPNK-----LIEGDITKIDEKD-FIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHH----hCCCC-----CccCccccCchhh-cCCCCCEEEeCCC
Confidence 79999999999998888888878899999993 333333 33211 1122222222111 1346999998776
Q ss_pred CCC----------cccHHHHHHHHHHhhCC-CcEEEEEEeecC------hhHHHHHHHHHhc-CceEEE
Q 026858 149 VYI----------EESAAQLVRAMEALVAD-DGVVLLGYQLRS------PEAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 149 ~~~----------~~~~~~~l~~l~~~l~p-gG~l~i~~~~r~------~~~~~~~~~~~~~-~f~~~~ 199 (232)
... .+....++....++++. .-.+++...... ......+.+.+.+ +|.+..
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~ 140 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYW 140 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEE
Confidence 631 12334455555554421 223455443222 1234455555554 776543
No 253
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.0056 Score=51.59 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=65.4
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHH---hcCCCC---------------CCce--------E
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLK---RNKPVL---------------NKSL--------K 121 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~---~~~~~~---------------~~~i--------~ 121 (232)
+.+||-=|||.|.++..+|..|. .+-+-+.|.-|..+..-+. .+...+ .+++ .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 56899999999999999999988 7777777763332222111 110000 0000 0
Q ss_pred E------------EEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 122 T------------SVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 122 ~------------~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
. ...|+..--..+...+.||+|+.+..+.-.+++-..+.++.++|+|||..+=.
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEec
Confidence 0 00110000000111346999999977777788889999999999999986543
No 254
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.86 E-value=0.0036 Score=53.00 Aligned_cols=75 Identities=16% Similarity=0.060 Sum_probs=48.5
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhC--CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLG--LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~ 139 (232)
.++. .+||.+||.|..+..++... ..+|+++|.++. +..++..+.. ..++.+...++.+....... ..+
T Consensus 18 ~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~~l~~~~~~ 90 (296)
T PRK00050 18 KPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKEVLAEGLGK 90 (296)
T ss_pred CCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHHHHHcCCCc
Confidence 3667 99999999999999888762 359999999994 5555443322 23466666665543221111 125
Q ss_pred ccEEEE
Q 026858 140 FDLVIA 145 (232)
Q Consensus 140 fD~Ii~ 145 (232)
+|.|++
T Consensus 91 vDgIl~ 96 (296)
T PRK00050 91 VDGILL 96 (296)
T ss_pred cCEEEE
Confidence 777775
No 255
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.81 E-value=0.044 Score=48.05 Aligned_cols=133 Identities=17% Similarity=0.113 Sum_probs=83.0
Q ss_pred CCCcccccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc
Q 026858 57 PYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI 133 (232)
Q Consensus 57 ~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~ 133 (232)
|+.++...++. +|||..+-+|.=+.++|.. +-+.+++.|.+. -+.....|+.+.+.. .......|-.....-
T Consensus 233 pv~aL~Pq~gE--RIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~---ntiv~n~D~~ef~~~ 307 (460)
T KOG1122|consen 233 PVMALDPQPGE--RILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT---NTIVSNYDGREFPEK 307 (460)
T ss_pred eeeecCCCCCC--eecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC---ceEEEccCccccccc
Confidence 45555567888 9999999998866555543 455899999997 477778888776622 123344433221111
Q ss_pred ccCCCCccEEEEcccCCC------c------c----------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHH
Q 026858 134 NALKPPFDLVIAADVVYI------E------E----------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMC 191 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~------~------~----------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~ 191 (232)
-..++||-|++-.+... . . .-..++....+++++||+|+.++-.-.....+...+.+
T Consensus 308 -~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~ya 386 (460)
T KOG1122|consen 308 -EFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYA 386 (460)
T ss_pred -ccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHH
Confidence 12347999997444322 1 1 23456666677779999999987666655445454444
Q ss_pred hcCc
Q 026858 192 AEVF 195 (232)
Q Consensus 192 ~~~f 195 (232)
-.++
T Consensus 387 L~K~ 390 (460)
T KOG1122|consen 387 LKKR 390 (460)
T ss_pred HHhC
Confidence 3333
No 256
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=96.80 E-value=0.016 Score=44.71 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=68.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-cCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-ALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~fD~I 143 (232)
.+. +|+-|||=+-...+.-......+++..|++. .... ..++ .+.-.|.+.+...+ ...++||+|
T Consensus 25 ~~~--~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~----~~~~-~F~fyD~~~p~~~~~~l~~~~d~v 90 (162)
T PF10237_consen 25 DDT--RIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQ----FGGD-EFVFYDYNEPEELPEELKGKFDVV 90 (162)
T ss_pred CCC--EEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHh----cCCc-ceEECCCCChhhhhhhcCCCceEE
Confidence 446 8999999664433333112334899999987 1111 1112 45667777665543 235689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|+-+++...+.+.....++..++++++.+++++...
T Consensus 91 v~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 91 VIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 998888777778888889999999999999987544
No 257
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=96.80 E-value=0.0013 Score=54.43 Aligned_cols=123 Identities=18% Similarity=0.090 Sum_probs=73.2
Q ss_pred CCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHH
Q 026858 27 MHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALK 106 (232)
Q Consensus 27 ~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~ 106 (232)
..+|..+|++++.|.+++.+.+. ..++. ++.++|||.+...+..++.+. .+...|...-.....
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d-------------~~~~~--~v~~l~~gi~~~~~~~a~~~~-~v~~~~~~~~~~~~l 128 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPD-------------LSSEL--TVEELGCDIALKHVLAARVPD-CVVTLDSLRCAGLLL 128 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcc-------------ccccc--chHhhccCHHHHHHHHHhccc-ceecCCccCcHHHHH
Confidence 56889999999999999999877 45677 999999999998866777643 333333222122222
Q ss_pred HHHHhcCCC--CCCceEEEEeecCCCcccc-cCCCCccEEEEcccCCCcccHHHHHHHHHHhh
Q 026858 107 HNLKRNKPV--LNKSLKTSVLYWNNQDQIN-ALKPPFDLVIAADVVYIEESAAQLVRAMEALV 166 (232)
Q Consensus 107 ~n~~~~~~~--~~~~i~~~~~d~~~~~~~~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l 166 (232)
.....+... ...+-.....+|..-...+ .....+|+|+..++.|. .....+++.+..+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL 190 (262)
T KOG2497|consen 129 EEIILLSRDLSLEVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL 190 (262)
T ss_pred HHHHhccccccccccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence 222211111 1111111111111111000 01123899999999998 77777888887766
No 258
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.76 E-value=0.0043 Score=54.49 Aligned_cols=56 Identities=11% Similarity=0.255 Sum_probs=42.2
Q ss_pred CCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEE
Q 026858 66 STRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTS 123 (232)
Q Consensus 66 ~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~ 123 (232)
+....|||||+|||++++.+++.|+..|++++.=. +...+++-...|+ ..++|.+.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng--~SdkI~vI 121 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG--MSDKINVI 121 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC--Cccceeee
Confidence 34568999999999999999999999999999765 5566666555555 33444443
No 259
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.69 E-value=0.01 Score=50.78 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=66.1
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
..+|+|.|.|.++-.+.. .+.++-+++.+. .+...+.+.. -+ |.....|.-+. ...-|+|+..-+
T Consensus 180 ~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g------V~~v~gdmfq~------~P~~daI~mkWi 245 (342)
T KOG3178|consen 180 VAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG------VEHVAGDMFQD------TPKGDAIWMKWI 245 (342)
T ss_pred eEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC------cceeccccccc------CCCcCeEEEEee
Confidence 899999999998877776 455788888775 3444444432 11 22222222111 234689999999
Q ss_pred CCCc--ccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 149 VYIE--ESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 149 ~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++++ ++..++++++++.|+|+|.+++.+.
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9865 4688899999999999999999864
No 260
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.43 E-value=0.18 Score=40.62 Aligned_cols=119 Identities=11% Similarity=0.088 Sum_probs=76.6
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
++.|+||--|.+...+.+. .+..+++.|+++ -+..+.++...+. +..++....+|.-..- .....+|+|+.+.
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~~l---~~~d~~d~ivIAG 93 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLAVL---ELEDEIDVIVIAG 93 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCcccc---CccCCcCEEEEeC
Confidence 6999999999999988876 567999999998 4777788887776 4455555555432221 1234689998765
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEE
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEK 199 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~ 199 (232)
+ ....+...++.-..-++.--+++ ..++.++. .+.+.+. .+|.+..
T Consensus 94 M--GG~lI~~ILee~~~~l~~~~rlI-LQPn~~~~---~LR~~L~~~~~~I~~ 140 (226)
T COG2384 94 M--GGTLIREILEEGKEKLKGVERLI-LQPNIHTY---ELREWLSANSYEIKA 140 (226)
T ss_pred C--cHHHHHHHHHHhhhhhcCcceEE-ECCCCCHH---HHHHHHHhCCceeee
Confidence 3 33455666666666666443444 44555533 3444444 3565543
No 261
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.36 E-value=0.012 Score=51.72 Aligned_cols=101 Identities=23% Similarity=0.266 Sum_probs=70.5
Q ss_pred CcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 69 RRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
.+|||.=+|||+=++..+.. +..+|++-|+|+ +++.+++|++.|+... .++.....|...-.. .....||+|=.
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-~~~~v~~~DAn~ll~--~~~~~fD~IDl 127 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-ERIEVSNMDANVLLY--SRQERFDVIDL 127 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-CCEEEEES-HHHHHC--HSTT-EEEEEE
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-ceEEEehhhHHHHhh--hccccCCEEEe
Confidence 48999999999999888766 567999999999 6889999999998332 145555554332211 12457999986
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|++. ...+++....+.++.||.+.+..
T Consensus 128 -DPfG---Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 -DPFG---SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ---SS-----HHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCCC---CccHhHHHHHHHhhcCCEEEEec
Confidence 5554 44678889999999999999973
No 262
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.32 E-value=0.013 Score=47.49 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=49.7
Q ss_pred CCCCCcEEEeCccccHHHHHH--HHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---CCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAF--YLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---LKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~l--a~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---~~~ 138 (232)
+++..++||||.|.-.+==.+ -..|. +.+++|+++ .+..++.++..|. .+...|....- -.....+++ ..+
T Consensus 76 ~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~-~l~~~I~lr~q-k~~~~if~giig~nE 152 (292)
T COG3129 76 PGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANP-GLERAIRLRRQ-KDSDAIFNGIIGKNE 152 (292)
T ss_pred CcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCc-chhhheeEEec-cCccccccccccccc
Confidence 445669999987763211111 12367 999999999 4777777776662 23333333322 111111222 345
Q ss_pred CccEEEEcccCCC
Q 026858 139 PFDLVIAADVVYI 151 (232)
Q Consensus 139 ~fD~Ii~~~~~~~ 151 (232)
.||.++|++++|.
T Consensus 153 ~yd~tlCNPPFh~ 165 (292)
T COG3129 153 RYDATLCNPPFHD 165 (292)
T ss_pred eeeeEecCCCcch
Confidence 7999999999984
No 263
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.28 E-value=0.054 Score=40.63 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=62.6
Q ss_pred cEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC-CCccEEEEcccCCCc---------ccHHHHHH
Q 026858 92 DIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK-PPFDLVIAADVVYIE---------ESAAQLVR 160 (232)
Q Consensus 92 ~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~fD~Ii~~~~~~~~---------~~~~~~l~ 160 (232)
+|++.|+-+ ++..+++.++... +..++.+..-...+.... .+ ++.|.++.+-..... +.--.+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~--i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEY--IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhh--CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 589999998 6888888777765 334566666655444321 22 379999986655322 23445667
Q ss_pred HHHHhhCCCcEEEEEEeecChhHH------HHHHHHHh-cCceEEEec
Q 026858 161 AMEALVADDGVVLLGYQLRSPEAH------KLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r~~~~~------~~~~~~~~-~~f~~~~~~ 201 (232)
.+.++|+|||.+.++.+..++... ..|.+.+. +.|++....
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred HHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 777788999999998776664332 33344343 468776654
No 264
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.10 E-value=0.01 Score=42.22 Aligned_cols=30 Identities=20% Similarity=0.147 Sum_probs=26.4
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcch
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s 99 (232)
...+|||||+|++...+.+.|+ .=.|+|.-
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 3799999999999999999888 78888853
No 265
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.04 E-value=0.071 Score=46.14 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=75.9
Q ss_pred cEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHH---hcCCC-CCCceEEEEeecCCCcccccCCCCccEE
Q 026858 70 RAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLK---RNKPV-LNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~---~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+||=+|.|-|+....+.+.+ ..+++.+|.+| +++...+|.. .|... -..++....-|..+.. ......||.|
T Consensus 292 ~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl--r~a~~~fD~v 369 (508)
T COG4262 292 SVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL--RTAADMFDVV 369 (508)
T ss_pred eEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH--HhhcccccEE
Confidence 89999999999999998884 78999999999 4555554332 22221 2344555444322221 1123479999
Q ss_pred EEcccCCCccc-----HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHH---HHHh-cCceEEEe
Q 026858 144 IAADVVYIEES-----AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFW---EMCA-EVFLIEKV 200 (232)
Q Consensus 144 i~~~~~~~~~~-----~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~---~~~~-~~f~~~~~ 200 (232)
|..-+=-.... -..+..-+++.++++|.+++...... .+-+.|| +.++ .+|.+...
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y-~tp~vfw~i~aTik~AG~~~~Py 434 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY-FTPRVFWRIDATIKSAGYRVWPY 434 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc-cCCceeeeehhHHHhCcceeeee
Confidence 97322111111 13455667888999999988643332 1223343 3444 36665544
No 266
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.97 E-value=0.048 Score=43.62 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=54.5
Q ss_pred cEEEeCccccHHHHHHHHh-----CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-----CCC
Q 026858 70 RAIELGAGCGAAGMAFYLL-----GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-----KPP 139 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-----~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-----~~~ 139 (232)
.|+|+|.-.|-..+..|.. +..+|+++|++... ..+...+. .....+|++...+..+.+..... ...
T Consensus 35 ~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~-~~~~a~e~--hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 35 LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP-HNRKAIES--HPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT---S-GGGG------TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch-hchHHHhh--ccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 8999999998877666542 33499999996410 00111111 11346789999887766543221 123
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
..+|+ -|.-|.....-..++....++++|+++++-
T Consensus 112 ~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 112 PVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SEEEE-ESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred ceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 44555 466666677778888899999999999985
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.96 E-value=0.063 Score=46.22 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=58.4
Q ss_pred ccCCCCCcEEEeCcc-ccHHHHHHHH-hCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAG-CGAAGMAFYL-LGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcG-tG~~s~~la~-~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..+++ +|+=.|+| .|..++.+|+ .++ +|+++|.++. .+.+++ -+.+ .+ .++.+.+......+.
T Consensus 164 ~~pG~--~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~----lGAd-----~~--i~~~~~~~~~~~~~~ 229 (339)
T COG1064 164 VKPGK--WVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKK----LGAD-----HV--INSSDSDALEAVKEI 229 (339)
T ss_pred CCCCC--EEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHH----hCCc-----EE--EEcCCchhhHHhHhh
Confidence 45788 88888887 2557788887 486 9999999983 222222 2211 11 122211111122234
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
||+|+..-+ ...+....+.|+++|++.++...
T Consensus 230 ~d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 230 ADAIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CcEEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 999997532 45677778899999999887543
No 268
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.81 E-value=0.18 Score=41.20 Aligned_cols=140 Identities=14% Similarity=0.170 Sum_probs=82.0
Q ss_pred cCeeEEEEEcCCCCCccceeechHHH-HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh--CC
Q 026858 14 RDALLSIQQDNGSMHVGTSVWPCSLV-LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL--GL 90 (232)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~W~~~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~--~~ 90 (232)
..+.+.++...+ ..-.++|.--.- |+.-+.--. ..++..++. .||-||+++|..-.+.+.. .-
T Consensus 116 gEkRisv~~~~~--kvEyRVWnPfrSKLAA~I~gGv----------dnihikpGs--KVLYLGAasGttVSHvSDiVGpe 181 (317)
T KOG1596|consen 116 GEKRISVENEDG--KVEYRVWNPFRSKLAAGILGGV----------DNIHIKPGS--KVLYLGAASGTTVSHVSDIVGPE 181 (317)
T ss_pred CceEEEeecCCC--cEEEEEeChHHHHHHHHhhcCc----------cceeecCCc--eEEEeeccCCceeehhhcccCCC
Confidence 344556655533 777899984332 555444222 233377999 9999999999877666654 23
Q ss_pred CcEEEEcchhH----HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhh
Q 026858 91 ADIVLTDISPV----MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALV 166 (232)
Q Consensus 91 ~~v~~~D~s~~----~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l 166 (232)
.-|++++.|.. +.++++ ...| |....-|...+....-.-+..|+|++ |+. .+.....+.-+....|
T Consensus 182 G~VYAVEfs~rsGRdL~nmAk-kRtN-------iiPIiEDArhP~KYRmlVgmVDvIFa-Dva-qpdq~RivaLNA~~FL 251 (317)
T KOG1596|consen 182 GCVYAVEFSHRSGRDLINMAK-KRTN-------IIPIIEDARHPAKYRMLVGMVDVIFA-DVA-QPDQARIVALNAQYFL 251 (317)
T ss_pred ceEEEEEecccchHHHHHHhh-ccCC-------ceeeeccCCCchheeeeeeeEEEEec-cCC-Cchhhhhhhhhhhhhh
Confidence 36899998862 222222 1122 12222222222221112235687775 433 3445566667888999
Q ss_pred CCCcEEEEEEe
Q 026858 167 ADDGVVLLGYQ 177 (232)
Q Consensus 167 ~pgG~l~i~~~ 177 (232)
++||.++++.+
T Consensus 252 k~gGhfvisik 262 (317)
T KOG1596|consen 252 KNGGHFVISIK 262 (317)
T ss_pred ccCCeEEEEEe
Confidence 99999999754
No 269
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.78 E-value=0.84 Score=40.16 Aligned_cols=141 Identities=17% Similarity=0.066 Sum_probs=90.2
Q ss_pred EeecCeeEEEEEcCCCCC-ccceeechHHH-HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh
Q 026858 11 LPIRDALLSIQQDNGSMH-VGTSVWPCSLV-LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL 88 (232)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~g~~~W~~~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~ 88 (232)
+.+..++|+++..|.... .-.+.|+++-. |.+++..... .. +||=|+=.-|.++..++..
T Consensus 4 ~~~~~~~~~l~r~p~~~~~~~l~awdaade~ll~~~~~~~~----------------~~--~~~i~nd~fGal~~~l~~~ 65 (378)
T PRK15001 4 LDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEI----------------RG--PVLILNDAFGALSCALAEH 65 (378)
T ss_pred cccCCceeEEEECCCCCCcCcccccccHHHHHHHHHhhccc----------------CC--CEEEEcCchhHHHHHHHhC
Confidence 345568999999998555 44899999875 4555544221 13 6999999999999999865
Q ss_pred CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCC
Q 026858 89 GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVAD 168 (232)
Q Consensus 89 ~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~p 168 (232)
+. ....|.--.....+.|...|+..- ..+..... .+...+.+|+|+.--+ =.-...+..+..+.+++.|
T Consensus 66 ~~--~~~~ds~~~~~~~~~n~~~n~~~~-~~~~~~~~-------~~~~~~~~d~vl~~~P-K~~~~l~~~l~~l~~~l~~ 134 (378)
T PRK15001 66 KP--YSIGDSYISELATRENLRLNGIDE-SSVKFLDS-------TADYPQQPGVVLIKVP-KTLALLEQQLRALRKVVTS 134 (378)
T ss_pred CC--CeeehHHHHHHHHHHHHHHcCCCc-ccceeecc-------cccccCCCCEEEEEeC-CCHHHHHHHHHHHHhhCCC
Confidence 44 233453334567888988886321 11222211 1123456999986322 2224566677888889999
Q ss_pred CcEEEEEEeecC
Q 026858 169 DGVVLLGYQLRS 180 (232)
Q Consensus 169 gG~l~i~~~~r~ 180 (232)
|+.+++.....+
T Consensus 135 ~~~ii~g~~~k~ 146 (378)
T PRK15001 135 DTRIIAGAKARD 146 (378)
T ss_pred CCEEEEEEecCC
Confidence 999887766554
No 270
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.66 E-value=0.095 Score=46.00 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=14.9
Q ss_pred CCcEEEeCccccHHHHHH
Q 026858 68 RRRAIELGAGCGAAGMAF 85 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~l 85 (232)
+.+|+|+|||+|..++.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 448999999999887655
No 271
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.59 E-value=0.17 Score=46.15 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=60.2
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCC-----------
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQ----------- 130 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~----------- 130 (232)
.++. +|+=+|||. |+.++..|+. |+ .|+++|.++. ..+..+..+. .+...+....
T Consensus 163 ~pg~--kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~---rle~aeslGA------~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 163 VPPA--KVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPE---VAEQVESMGA------EFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred cCCC--EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHH---HHHHHHHcCC------eEEEeccccccccccchhhhc
Confidence 3566 999999999 8888887766 88 8999999983 2222222221 1111111100
Q ss_pred -cc--------cccCCCCccEEEEcccCCCcccHHHH-HHHHHHhhCCCcEEEEEEe
Q 026858 131 -DQ--------INALKPPFDLVIAADVVYIEESAAQL-VRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 131 -~~--------~~~~~~~fD~Ii~~~~~~~~~~~~~~-l~~l~~~l~pgG~l~i~~~ 177 (232)
.. +....+.+|+||.+...-.... +.+ .+...+.++|||.++....
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~a-P~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPA-PKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccC-cchHHHHHHHhcCCCCEEEEEcc
Confidence 00 0000135999997654322222 234 4889999999999887643
No 272
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.56 E-value=0.01 Score=50.62 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=69.3
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HH-------HHHHHHHhcCCCCCCceEEEEeecCCCccccc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MP-------ALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~-------~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~ 135 (232)
.+|+ -|.|=-.|||.+-+.+|+.|+ .|.|+|++-. +. ....|.+.-+. ...-+.+...|..+..--
T Consensus 207 ~pGd--ivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~-~~~fldvl~~D~sn~~~r-- 280 (421)
T KOG2671|consen 207 KPGD--IVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGS-SSQFLDVLTADFSNPPLR-- 280 (421)
T ss_pred CCCC--EEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCC-cchhhheeeecccCcchh--
Confidence 4788 999999999999999999998 9999999963 33 23334333321 112244555555554421
Q ss_pred CCCCccEEEEcccCCCcc----------------------------------cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 136 LKPPFDLVIAADVVYIEE----------------------------------SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~----------------------------------~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
....||.|||. +.|... .+..++.-..+.|..||++.+-.+
T Consensus 281 sn~~fDaIvcD-PPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 281 SNLKFDAIVCD-PPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hcceeeEEEeC-CCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 12369999974 444221 245556666777788999887654
No 273
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.39 E-value=0.021 Score=50.92 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=74.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~f 140 (232)
..++++|||.=|+||+-++..|+. +..++++-|.++ ++...+.|++.|. ....++....|.+..-. .......|
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~--v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG--VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC--chhhcccccchHHHHHHhcccccccc
Confidence 444569999999999999888876 677999999998 6888999999885 22334444443322111 11123579
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+|=+ |++.. ...++....+.++.||.+++..
T Consensus 185 DvIDL-DPyGs---~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDL-DPYGS---PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEec-CCCCC---ccHHHHHHHHHhhcCCEEEEEe
Confidence 99986 55543 3457888888999999999963
No 274
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.35 E-value=0.045 Score=46.54 Aligned_cols=96 Identities=22% Similarity=0.244 Sum_probs=60.7
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC-Cccc-----c
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN-QDQI-----N 134 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~~~~-----~ 134 (232)
..+. +||=+|+|+ |+++...|+. |+.+|+.+|.++. ++.+++ + +.. .+....-.. .... .
T Consensus 168 k~Gs--~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~-----~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 168 KKGS--KVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT-----VTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred ccCC--eEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe-----EEeeccccccHHHHHHHHHh
Confidence 3677 999999999 9999888876 9999999999984 333333 2 111 011110000 0110 0
Q ss_pred cCC-CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALK-PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
... ..+|+.+-+. -.+..++..-..++.||.+.++.
T Consensus 237 ~~g~~~~d~~~dCs------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCS------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred hccccCCCeEEEcc------CchHHHHHHHHHhccCCEEEEec
Confidence 111 2488888653 44567777888999999977764
No 275
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.25 E-value=0.076 Score=44.16 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=59.0
Q ss_pred cEEEeCccccH--HHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---cCCCCcc-
Q 026858 70 RAIELGAGCGA--AGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---ALKPPFD- 141 (232)
Q Consensus 70 ~VLElGcGtG~--~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~~fD- 141 (232)
.+||||||--. .....|+. .-.+|+.+|.++++..-.+.+..... .....+...|..+....- ...+-+|
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 89999999522 33444443 33399999999964333333322221 123678888887765321 1111222
Q ss_pred ----EEEEcccCCC---cccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 142 ----LVIAADVVYI---EESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 142 ----~Ii~~~~~~~---~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
-+++..++++ .++...++..+...|.||..+.++.....
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 3445566653 35789999999999999999999876543
No 276
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.14 E-value=0.029 Score=46.80 Aligned_cols=95 Identities=11% Similarity=0.046 Sum_probs=58.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
.+. .++|+|||.|-....- -.+ .+++.|++.-+....+ ..+. . .....|. ...+....+||.++
T Consensus 45 ~gs--v~~d~gCGngky~~~~--p~~-~~ig~D~c~~l~~~ak--~~~~-~-----~~~~ad~---l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGS--VGLDVGCGNGKYLGVN--PLC-LIIGCDLCTGLLGGAK--RSGG-D-----NVCRADA---LKLPFREESFDAAL 108 (293)
T ss_pred Ccc--eeeecccCCcccCcCC--Ccc-eeeecchhhhhccccc--cCCC-c-----eeehhhh---hcCCCCCCccccch
Confidence 356 8999999998422110 123 6788887763222221 1111 0 1222222 22333456899999
Q ss_pred EcccCCCcc---cHHHHHHHHHHhhCCCcEEEEE
Q 026858 145 AADVVYIEE---SAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 145 ~~~~~~~~~---~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+..++++.. -...+++.+.+.++|||..++.
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999998654 4678899999999999997764
No 277
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.90 E-value=0.1 Score=45.27 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=58.6
Q ss_pred cEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCC-CccEEE
Q 026858 70 RAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKP-PFDLVI 144 (232)
Q Consensus 70 ~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~-~fD~Ii 144 (232)
+|+=+|||+ |+++..+++. |+.+++++|.++. ++.+++ ..... ............. .....+ .+|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~---~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE---AGGAD----VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH---hCCCe----EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 899999999 9998777766 8889999999984 333322 11111 0000000000000 011122 599999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
-+.. ....+..+.++++++|++.+...
T Consensus 244 e~~G------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 244 EAVG------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred ECCC------CHHHHHHHHHHhcCCCEEEEEec
Confidence 6543 35578889999999999988753
No 278
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.89 E-value=0.56 Score=40.31 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=54.5
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
+++ +||=.|||. |..++.+|+. |+.+++++|.++. ++.++ ..+... -+....-++. ......+.+|
T Consensus 169 ~g~--~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~---~~~~~~g~~D 237 (343)
T PRK09880 169 QGK--RVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----EMGADK--LVNPQNDDLD---HYKAEKGYFD 237 (343)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----HcCCcE--EecCCcccHH---HHhccCCCCC
Confidence 567 888899876 7777777765 7757999998873 22221 122110 0000000110 0001123589
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|+-+- .. ...+....++++++|++++...
T Consensus 238 ~vid~~--G~----~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 238 VSFEVS--GH----PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EEEECC--CC----HHHHHHHHHHhhcCCEEEEEcc
Confidence 998542 21 3456777889999999988653
No 279
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.88 E-value=0.2 Score=42.52 Aligned_cols=141 Identities=19% Similarity=0.189 Sum_probs=71.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccC
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV 149 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~ 149 (232)
+++||.||.|.+++.+.+.|...+.++|+++ .+......|.. .....|....... ..++.+|+++.+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~---~a~~~y~~N~~------~~~~~Di~~~~~~-~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDP---DACETYKANFP------EVICGDITEIDPS-DLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSH---HHHHHHHHHHT------EEEESHGGGCHHH-HHHHT-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCH---HHHHhhhhccc------ccccccccccccc-cccccceEEEeccCC
Confidence 7999999999999999999987899999999 33333333321 2333344333321 111159999987765
Q ss_pred CCcc----------cHHHHHHHHHH---hhCCCcEEEEEEeecC------hhHHHHHHHHHhc-CceEEEecCCCCCCCC
Q 026858 150 YIEE----------SAAQLVRAMEA---LVADDGVVLLGYQLRS------PEAHKLFWEMCAE-VFLIEKVPHEDLHPDY 209 (232)
Q Consensus 150 ~~~~----------~~~~~l~~l~~---~l~pgG~l~i~~~~r~------~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~ 209 (232)
...+ ....++..+.+ .++|. +++...... ......+.+.+.+ +|.+....-. ..+|
T Consensus 72 Q~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vln--a~~y 147 (335)
T PF00145_consen 72 QGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLN--AADY 147 (335)
T ss_dssp TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEE--GGGG
T ss_pred ceEeccccccccccccchhhHHHHHHHhhccce--EEEecccceeeccccccccccccccccccceeehhcccc--HhhC
Confidence 3211 12223333333 34664 444443332 1234555555654 7766533211 1223
Q ss_pred CC--CceEEEEEEecCc
Q 026858 210 GY--EETDVYILRKKKK 224 (232)
Q Consensus 210 ~~--~~~~l~~~~~~~~ 224 (232)
.. .+.++|.+..++.
T Consensus 148 GvPQ~R~R~fivg~r~~ 164 (335)
T PF00145_consen 148 GVPQNRERVFIVGIRKD 164 (335)
T ss_dssp TSSBE-EEEEEEEEEGG
T ss_pred CCCCceeeEEEEEECCC
Confidence 33 3455666665543
No 280
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.24 Score=37.52 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=59.0
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+.+|||+|-|.+-+.+++.|....+++++++. +.+.+-...+.+ +..+..|..-|.=..+ -..|..++..
T Consensus 75 klvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~RkdlwK~d-----l~dy~~vviF-- 145 (199)
T KOG4058|consen 75 KLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDLWKVD-----LRDYRNVVIF-- 145 (199)
T ss_pred cEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhhhhcc-----ccccceEEEe--
Confidence 79999999999999999998779999999995 445544444433 3344445444421111 1223333321
Q ss_pred CCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 149 VYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
...+..+.+...+..-+..+.+++-+
T Consensus 146 -gaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 146 -GAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred -ehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 12234455666667677777777654
No 281
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.82 E-value=0.22 Score=42.98 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=21.5
Q ss_pred CCCcEEEeCccccHHHHHHHHh------------C------CCcEEEEcch
Q 026858 67 TRRRAIELGAGCGAAGMAFYLL------------G------LADIVLTDIS 99 (232)
Q Consensus 67 ~~~~VLElGcGtG~~s~~la~~------------~------~~~v~~~D~s 99 (232)
++.+|+|+||.+|..++.+... + . +|+..|..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~-~v~~nDlP 65 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEF-QVFFNDLP 65 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EE-EEEEEE-T
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeE-EEEeCCCC
Confidence 3459999999999988765432 1 3 89999975
No 282
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.81 E-value=0.021 Score=47.89 Aligned_cols=99 Identities=15% Similarity=0.088 Sum_probs=68.0
Q ss_pred CCCCCcEEEeCccccHHHH-HHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGM-AFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~-~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.+. .|.|+=+|.|..++ .+.+.|++.|++.|.++ .++..++|++.|+... +......|-. ....+...|.
T Consensus 194 ~~e--viVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~--r~~i~~gd~R----~~~~~~~Adr 265 (351)
T KOG1227|consen 194 DGE--VIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMD--RCRITEGDNR----NPKPRLRADR 265 (351)
T ss_pred ccc--hhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHH--HHHhhhcccc----ccCccccchh
Confidence 446 89999999999999 66777999999999999 6899999999886332 2222222211 1123456888
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCC-CcEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVAD-DGVVLLG 175 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~p-gG~l~i~ 175 (232)
|.+.-.......+..++ ++|+| ||-++.+
T Consensus 266 VnLGLlPSse~~W~~A~----k~Lk~eggsilHI 295 (351)
T KOG1227|consen 266 VNLGLLPSSEQGWPTAI----KALKPEGGSILHI 295 (351)
T ss_pred eeeccccccccchHHHH----HHhhhcCCcEEEE
Confidence 88876666666777654 45555 4535554
No 283
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.23 Score=42.98 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=68.6
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-CCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-LKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii~~ 146 (232)
+|+|--+|||+=++..|.. +..++++-|+|+ +++.++.|...|.... ......|. ..+.. ....||+|=.
T Consensus 55 ~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~---~~v~n~DA---N~lm~~~~~~fd~IDi- 127 (380)
T COG1867 55 RVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED---AEVINKDA---NALLHELHRAFDVIDI- 127 (380)
T ss_pred EEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc---ceeecchH---HHHHHhcCCCccEEec-
Confidence 9999999999999888866 544899999999 6899999999983221 12222221 11111 2357998875
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|++.. ..+++....+.++.+|.+.+..
T Consensus 128 DPFGS---PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPFGS---PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCC---CchHHHHHHHHhhcCCEEEEEe
Confidence 66653 3557777888888899999864
No 284
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.23 E-value=0.15 Score=41.68 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=41.7
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHH----HHHHhcCCC---CCCceEEEEeecCCCcccccCCCCccE
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALK----HNLKRNKPV---LNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~----~n~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
+|||.-+|.|.-++.+|..|+ +|++++.|+.+..+. ++....... ...+++....|...... ....+||+
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~--~~~~s~DV 154 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR--QPDNSFDV 154 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC--CHSS--SE
T ss_pred EEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh--hcCCCCCE
Confidence 899999999999999998898 899999999543222 222222111 12456666665444332 23468999
Q ss_pred EEEcccC
Q 026858 143 VIAADVV 149 (232)
Q Consensus 143 Ii~~~~~ 149 (232)
|..-+.+
T Consensus 155 VY~DPMF 161 (234)
T PF04445_consen 155 VYFDPMF 161 (234)
T ss_dssp EEE--S-
T ss_pred EEECCCC
Confidence 9984443
No 285
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.14 E-value=2.7 Score=36.54 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=72.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh---C--CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc---
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL---G--LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI--- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~---~--~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~--- 133 (232)
..++. +|||+.+-+|.-+..+... . .+.+++-|.++. +....+...... ...+.....+.......
T Consensus 153 v~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 153 VKPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred cCCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceeccccccc
Confidence 45778 9999999999977555443 2 127999999984 444444433221 11122222222222211
Q ss_pred ---ccCCCCccEEEEcccCCCcc-----------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhH----
Q 026858 134 ---NALKPPFDLVIAADVVYIEE-----------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEA---- 183 (232)
Q Consensus 134 ---~~~~~~fD~Ii~~~~~~~~~-----------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~---- 183 (232)
+.....||-|++--+..... .--.++..-.++|++||+++.++-.-++..
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaV 307 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAV 307 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHH
Confidence 11123699999722221110 122355667778899999999875444432
Q ss_pred HHHHHHHHhcCceEEEec
Q 026858 184 HKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 184 ~~~~~~~~~~~f~~~~~~ 201 (232)
.+..++.....+.+....
T Consensus 308 V~~~L~~~~~~~~lv~~~ 325 (375)
T KOG2198|consen 308 VQEALQKVGGAVELVDVS 325 (375)
T ss_pred HHHHHHHhcCcccceeec
Confidence 333344444455554443
No 286
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.14 E-value=0.04 Score=42.13 Aligned_cols=121 Identities=11% Similarity=0.085 Sum_probs=67.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+.+=+|+..-..-..+.+.|+.+++.+++++. ++.-.++. + ..+...++.... ....++||.+.+...
T Consensus 4 ~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr------~---ssi~p~df~~~~--~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 4 SGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDR------L---SSILPVDFAKNW--QKYAGSFDFAASFSS 72 (177)
T ss_pred eEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccc------c---ccccHHHHHHHH--HHhhccchhhheech
Confidence 78888887666666677778889999998761 11110100 0 011111211111 113467888887555
Q ss_pred CCC-----------cccHHHHHHHHHHhhCCCcEEEEEEeecCh----hH----HHHHHHHHhcCceEEEec
Q 026858 149 VYI-----------EESAAQLVRAMEALVADDGVVLLGYQLRSP----EA----HKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 149 ~~~-----------~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~----~~----~~~~~~~~~~~f~~~~~~ 201 (232)
+.+ +......+..++++||+||.+++..+...+ +. -...+.++-.+|++...-
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tf 144 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTF 144 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeee
Confidence 522 123455788899999999999997542221 00 112244455677766553
No 287
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.80 E-value=0.39 Score=43.28 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=70.5
Q ss_pred CcEEEeCccccHHHHHHHHhCCC--cEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLA--DIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~--~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
.+|+|..+|.|.++-.+...+.- .|+-++..+.+.. +-..+ + .=...||... ++..+..||+|.+.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRG--L----IG~yhDWCE~--fsTYPRTYDLlHA~ 434 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRG--L----IGVYHDWCEA--FSTYPRTYDLLHAD 434 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhcc--c----chhccchhhc--cCCCCcchhheehh
Confidence 39999999999877766654321 2222221111111 11111 1 1123355432 34456789999998
Q ss_pred ccCC---CcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEecC
Q 026858 147 DVVY---IEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVPH 202 (232)
Q Consensus 147 ~~~~---~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~~ 202 (232)
..+. ..-.+..++-++-|+|+|+|.+++-+.. ....+..+.+.. .|++.....
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~---~vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV---DVLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH---HHHHHHHHHHHhCcceEEEEec
Confidence 7764 2346888999999999999999987642 234444454444 566665543
No 288
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.65 E-value=0.59 Score=36.16 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=45.0
Q ss_pred CCCccEEEEcccCCC-------------cccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 137 KPPFDLVIAADVVYI-------------EESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~-------------~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
...||.|+-+.|.-. ...+..+++.+.++|+++|.+.++-....+.......++.+ .++.+....
T Consensus 73 ~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 73 NQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred CCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEe
Confidence 457999999877654 12467788889999999999999876665422334444444 377765553
No 289
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.52 E-value=0.29 Score=40.30 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=43.2
Q ss_pred cEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|+|||||.=-+++..... ++ .|++.|++. .++....-....+. .......|..... .....|+.++-
T Consensus 108 sVlDigCGlNPlalp~~~~~~~a-~Y~a~DID~~~ve~l~~~l~~l~~----~~~~~v~Dl~~~~----~~~~~DlaLll 178 (251)
T PF07091_consen 108 SVLDIGCGLNPLALPWMPEAPGA-TYIAYDIDSQLVEFLNAFLAVLGV----PHDARVRDLLSDP----PKEPADLALLL 178 (251)
T ss_dssp EEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH----TTSEESEEEEE
T ss_pred hhhhhhccCCceehhhcccCCCc-EEEEEeCCHHHHHHHHHHHHhhCC----CcceeEeeeeccC----CCCCcchhhHH
Confidence 8999999998888776654 45 999999998 45555554444332 2344444544332 23468999974
Q ss_pred c
Q 026858 147 D 147 (232)
Q Consensus 147 ~ 147 (232)
=
T Consensus 179 K 179 (251)
T PF07091_consen 179 K 179 (251)
T ss_dssp T
T ss_pred H
Confidence 3
No 290
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.49 E-value=0.027 Score=40.22 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=29.9
Q ss_pred CccEEEEcccCC------CcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 139 PFDLVIAADVVY------IEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 139 ~fD~Ii~~~~~~------~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+||+|+|-.+.- ..+.+..+++.+.++|+|||.+++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999988773 3356888999999999999999985
No 291
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.17 E-value=0.3 Score=42.55 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=29.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~ 101 (232)
.+-+ .|+|+|+|.|.++..++.. |. .|.++|.|..
T Consensus 152 ~gi~--~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~ 187 (476)
T KOG2651|consen 152 TGID--QVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQR 187 (476)
T ss_pred cCCC--eeEEcCCCchHHHHHHhhccCc-eEEEeccchH
Confidence 3556 8999999999999999866 66 9999999863
No 292
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.04 E-value=3.3 Score=35.15 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=33.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHH
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNL 109 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~ 109 (232)
..++. ..+|.--|-|-.+..+... ..++++++|-++ ++..++...
T Consensus 21 ~~~~g--iyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l 68 (314)
T COG0275 21 PKPDG--IYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL 68 (314)
T ss_pred cCCCc--EEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh
Confidence 44667 9999999998888777655 244899999999 455554444
No 293
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=92.95 E-value=2.1 Score=39.01 Aligned_cols=104 Identities=13% Similarity=-0.018 Sum_probs=63.3
Q ss_pred cEEEeCccccHHHHHHHHh----C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc--ccCCCCcc
Q 026858 70 RAIELGAGCGAAGMAFYLL----G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI--NALKPPFD 141 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~----~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~~~fD 141 (232)
+|.|--||+|..-...+.. . ...++|.++++ ....++.|...++... .+.....+--..+.. ....+.||
T Consensus 189 ~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~--~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 189 SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG--DANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc--cccccccccccCCcccccCCcccee
Confidence 8999999998755544432 1 13799999887 4777888887766321 111111111111111 11235699
Q ss_pred EEEEcccCC---Ccc----------------------cHHHHHHHHHHhhCCCcEEEEE
Q 026858 142 LVIAADVVY---IEE----------------------SAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 142 ~Ii~~~~~~---~~~----------------------~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.|++++++. +.. .-...+.++...++|+|+.-++
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 999988774 110 2267788899999998876654
No 294
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.89 E-value=0.26 Score=40.69 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=29.0
Q ss_pred CCCcEEEeCccccHHHHHHHHh---------CCCcEEEEcchhHHHHHHHHH
Q 026858 67 TRRRAIELGAGCGAAGMAFYLL---------GLADIVLTDISPVMPALKHNL 109 (232)
Q Consensus 67 ~~~~VLElGcGtG~~s~~la~~---------~~~~v~~~D~s~~~~~~~~n~ 109 (232)
.+.+|+|+|+|+|.++..+.+. ..-+++.++.|+.+...+++.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~ 69 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKER 69 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHH
Confidence 3459999999999998766543 123899999999655444443
No 295
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.86 E-value=0.37 Score=38.42 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=28.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~ 101 (232)
.++. .|||-.||+|.+++.+.+.+- +++++|+++.
T Consensus 190 ~~gd--iVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~ 224 (231)
T PF01555_consen 190 NPGD--IVLDPFAGSGTTAVAAEELGR-RYIGIEIDEE 224 (231)
T ss_dssp -TT---EEEETT-TTTHHHHHHHHTT--EEEEEESSHH
T ss_pred ccce--eeehhhhccChHHHHHHHcCC-eEEEEeCCHH
Confidence 3677 999999999999999998886 9999999984
No 296
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=0.32 Score=42.11 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCcEEEeCccccHHHHHHHHh---------CCCcEEEEcchhHHHHHHHHHHhc
Q 026858 68 RRRAIELGAGCGAAGMAFYLL---------GLADIVLTDISPVMPALKHNLKRN 112 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~---------~~~~v~~~D~s~~~~~~~~n~~~~ 112 (232)
+..++|||+|+|.+...+.+. ...++..++.|+.+...+++....
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 447999999999988665442 234999999999766555544433
No 297
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.55 E-value=0.49 Score=37.81 Aligned_cols=111 Identities=11% Similarity=0.021 Sum_probs=56.9
Q ss_pred CCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcC----CCCCCceEEEEeecCCCcccccCCCC-
Q 026858 67 TRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNK----PVLNKSLKTSVLYWNNQDQINALKPP- 139 (232)
Q Consensus 67 ~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~----~~~~~~i~~~~~d~~~~~~~~~~~~~- 139 (232)
+++.+.|||||-|-+.+.++-. +-.-+.|.++-. +.++.+..++... ...-.++............--+..++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4568999999999988888866 333677777653 3334443332211 01112233333321111100001121
Q ss_pred -ccEEEEcccCCCcc------cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 140 -FDLVIAADVVYIEE------SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 140 -fD~Ii~~~~~~~~~------~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
-+..+..++.+... .-..++....-+|++||.++....
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 23333333222111 234567778889999999998763
No 298
>PRK11524 putative methyltransferase; Provisional
Probab=92.45 E-value=0.5 Score=39.77 Aligned_cols=42 Identities=12% Similarity=0.012 Sum_probs=34.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHH
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKH 107 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~ 107 (232)
..++. .|||-.||+|.+++.+.+.+- +++|+|+++. .+.+.+
T Consensus 206 S~~GD--~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 206 SNPGD--IVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCCC--EEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHH
Confidence 45788 999999999999999999886 9999999985 343333
No 299
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.43 E-value=1 Score=39.38 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=58.0
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEee-cCCCcccccC-C
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLY-WNNQDQINAL-K 137 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d-~~~~~~~~~~-~ 137 (232)
..++. +||.+|||+ |..+..+|+. |..+++++|.++. ...++. ... . ..+.....+ +.... .... .
T Consensus 182 ~~~g~--~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~----~~~-~-~vi~~~~~~~~~~~l-~~~~~~ 252 (386)
T cd08283 182 VKPGD--TVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS----HLG-A-ETINFEEVDDVVEAL-RELTGG 252 (386)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC-c-EEEcCCcchHHHHHH-HHHcCC
Confidence 34667 899999987 7777777766 6646999998873 222222 110 1 001111110 10000 0011 1
Q ss_pred CCccEEEEcccCC---------------CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 PPFDLVIAADVVY---------------IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~---------------~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+|+|+-+-.-. ...+....+..+.++++++|+++...
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2589988642100 01123557888899999999998864
No 300
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.42 E-value=0.89 Score=40.45 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=53.7
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..+++ +|+=+|||+ |......++. |+ +|+.+|.++. ...+. ..+ . ..... .. .-..
T Consensus 199 ~l~Gk--tVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~----~~G--~----~~~~~-----~e---~v~~ 257 (413)
T cd00401 199 MIAGK--VAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAA----MEG--Y----EVMTM-----EE---AVKE 257 (413)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHH----hcC--C----EEccH-----HH---HHcC
Confidence 45788 999999998 7766555544 88 8999999873 22111 111 1 11111 11 1135
Q ss_pred ccEEEEcccCCCcccHHHHHH-HHHHhhCCCcEEEEEEe
Q 026858 140 FDLVIAADVVYIEESAAQLVR-AMEALVADDGVVLLGYQ 177 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~-~l~~~l~pgG~l~i~~~ 177 (232)
.|+|+.+.. . ...+. ...+.+++||+++.+..
T Consensus 258 aDVVI~atG-----~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 258 GDIFVTTTG-----N-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCEEEECCC-----C-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 799987431 2 33444 35788999999987764
No 301
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.12 E-value=3.2 Score=34.31 Aligned_cols=110 Identities=18% Similarity=0.168 Sum_probs=66.2
Q ss_pred CcEEEeCccccHHHHHHHH----hC-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 69 RRAIELGAGCGAAGMAFYL----LG-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~----~~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.+.+|+|+|+..-+..+.. .+ ..+++-+|++.. +...++.+....+.+ .+.-...+..........-++==.
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l--~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL--EVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC--eEeehhhhHHHHHhcccCCCeEEE
Confidence 4899999999886644432 22 248999999984 677777776654333 112222222111111011122223
Q ss_pred EEEcccC--CCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 143 VIAADVV--YIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~--~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
++....+ +.+.....++..+...++||-.+++....+.
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 3344444 4667788899999999999999999755444
No 302
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=91.94 E-value=2.5 Score=35.52 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=67.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++ .|+=+| ---+.|+.++..+ +.++..+|+++- +....+-++.-+. +++....+|..++.+.. ..++||
T Consensus 151 L~gK--~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~---~~ie~~~~Dlr~plpe~-~~~kFD 223 (354)
T COG1568 151 LEGK--EIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY---NNIEAFVFDLRNPLPED-LKRKFD 223 (354)
T ss_pred cCCC--eEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc---cchhheeehhcccChHH-HHhhCC
Confidence 3566 799998 5667778777663 569999999994 5555555554432 22567777777765422 346899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCC-C--cEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVAD-D--GVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~p-g--G~l~i~~ 176 (232)
+.+. ++.+-...+..++..=-..|+. | |++-+..
T Consensus 224 vfiT-DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 224 VFIT-DPPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred eeec-CchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 9985 5556555566666554445554 3 5555554
No 303
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.60 E-value=5.4 Score=34.09 Aligned_cols=91 Identities=13% Similarity=-0.007 Sum_probs=52.9
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +||=.|+|. |.....+|+. |+ ++++++.++. ....++..+... + + +... . ..+.+
T Consensus 163 ~~~g~--~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~---~~~~a~~~Ga~~---v-i---~~~~-~----~~~~~ 224 (329)
T TIGR02822 163 LPPGG--RLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAA---ARRLALALGAAS---A-G---GAYD-T----PPEPL 224 (329)
T ss_pred CCCCC--EEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChH---HHHHHHHhCCce---e-c---cccc-c----Ccccc
Confidence 34677 899999865 5555666655 77 7999988773 111122222110 0 0 1000 0 11357
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+++..+.. ...+....+.++++|++++...
T Consensus 225 d~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 225 DAAILFAPA------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred eEEEECCCc------HHHHHHHHHhhCCCcEEEEEec
Confidence 887754432 2467778889999999987653
No 304
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.55 E-value=3 Score=39.50 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=37.7
Q ss_pred CCccEEEEcccCC---CcccH-HHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 138 PPFDLVIAADVVY---IEESA-AQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 138 ~~fD~Ii~~~~~~---~~~~~-~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
..+|.++. |.+. +++.+ +.+++.+.++++|||++.-.. ....+...+. .||++...+
T Consensus 165 ~~~d~~~l-D~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t------~a~~vr~~l~~~GF~v~~~~ 226 (662)
T PRK01747 165 ARADAWFL-DGFAPAKNPDMWSPNLFNALARLARPGATLATFT------SAGFVRRGLQEAGFTVRKVK 226 (662)
T ss_pred ccccEEEe-CCCCCccChhhccHHHHHHHHHHhCCCCEEEEee------hHHHHHHHHHHcCCeeeecC
Confidence 46999997 4332 33333 568899999999999887443 1234444444 589887764
No 305
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=91.54 E-value=1.6 Score=36.39 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=64.4
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc----cccCCC-CccEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ----INALKP-PFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~-~fD~I 143 (232)
.|+.||||.=.-...+... +. +++=+|..+++..-++.+...+.....+..+...|+..... ..+.+. .--++
T Consensus 84 qvV~LGaGlDTr~~Rl~~~~~~-~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~ 162 (260)
T TIGR00027 84 QVVILGAGLDTRAYRLPWPDGT-RVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAW 162 (260)
T ss_pred EEEEeCCccccHHHhcCCCCCC-eEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeee
Confidence 7999999986555544322 33 56666666666655555554433234456677777652111 111222 23455
Q ss_pred EEcccC-C-CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVV-Y-IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~-~-~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++-.++ | ..+....+++.+.+...||+.+++-..
T Consensus 163 i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 163 LWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred eecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 554444 3 556788899999999889998887653
No 306
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.47 E-value=2.2 Score=35.54 Aligned_cols=95 Identities=20% Similarity=0.147 Sum_probs=52.7
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-c-CCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-A-LKP 138 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-~-~~~ 138 (232)
.++. +||=+|+|+ |.++..+|+. |+.+++++|.++. ...++. .+.. ..+...+. ..... . ...
T Consensus 119 ~~g~--~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~--~~~~~~~~~~~ 186 (280)
T TIGR03366 119 LKGR--RVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT----ALAEPEVL--AERQGGLQNGR 186 (280)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc----EecCchhh--HHHHHHHhCCC
Confidence 3677 888899876 6666666665 7745999987763 222111 1111 00000000 00000 0 113
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+|+|+-.- - -...+....++++++|++++..
T Consensus 187 g~d~vid~~--G----~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 187 GVDVALEFS--G----ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCEEEECC--C----ChHHHHHHHHHhcCCCEEEEec
Confidence 589988532 1 1346677788999999998765
No 307
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.27 E-value=1.4 Score=37.30 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=51.1
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
+++ +||=+|||. |++++.+|+. |+..++++|.++. +..+.. .. . .+-.. . ....+|
T Consensus 144 ~~~--~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~----~~--~--------i~~~~-~----~~~g~D 202 (308)
T TIGR01202 144 KVL--PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG----YE--V--------LDPEK-D----PRRDYR 202 (308)
T ss_pred CCC--cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh----cc--c--------cChhh-c----cCCCCC
Confidence 456 788889887 7777777765 8756778887662 211111 00 0 01000 0 123589
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+-+- .. ...+....++++++|++++..
T Consensus 203 vvid~~--G~----~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 203 AIYDAS--GD----PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EEEECC--CC----HHHHHHHHHhhhcCcEEEEEe
Confidence 988542 21 345677788999999998764
No 308
>PRK13699 putative methylase; Provisional
Probab=91.21 E-value=0.96 Score=36.85 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=31.3
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~ 101 (232)
.++. .|||-.||+|..++.+.+.+. +++++|+++.
T Consensus 162 ~~g~--~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~ 196 (227)
T PRK13699 162 HPNA--IVLDPFAGSGSTCVAALQSGR-RYIGIELLEQ 196 (227)
T ss_pred CCCC--EEEeCCCCCCHHHHHHHHcCC-CEEEEecCHH
Confidence 3777 999999999999999888887 9999999984
No 309
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.12 E-value=0.38 Score=42.52 Aligned_cols=60 Identities=20% Similarity=0.172 Sum_probs=47.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEee
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLY 126 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d 126 (232)
..++. .|-|+.||.|..++.+++.++ +|++-|.++ +++....|+..|... ...+....+|
T Consensus 247 fk~ge--vv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~-~~~iei~Nmd 307 (495)
T KOG2078|consen 247 FKPGE--VVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVD-PSAIEIFNMD 307 (495)
T ss_pred cCCcc--hhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccc-hhheeeeccc
Confidence 34777 899999999999999999998 999999998 688999999888632 1124444444
No 310
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.72 E-value=0.87 Score=39.21 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=65.7
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC-CccEEEEcc
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP-PFDLVIAAD 147 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~fD~Ii~~~ 147 (232)
++++||.||.|.+++.+...|+.-+.++|+++ .+.+....|.+. . .....|....... .... .+|+++.++
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~---~a~~ty~~n~~~--~--~~~~~di~~~~~~-~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP---PAVATYKANFPH--G--DIILGDIKELDGE-ALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCH---HHHHHHHHhCCC--C--ceeechHhhcChh-hccccCCCEEEeCC
Confidence 48999999999999988888988889999999 333333333321 0 1222222211110 1122 689999977
Q ss_pred cCCCcc----------cHHHHHHH---HHHhhCCCcEEEEEEeecC-----hhHHHHHHHHHhc-Cce
Q 026858 148 VVYIEE----------SAAQLVRA---MEALVADDGVVLLGYQLRS-----PEAHKLFWEMCAE-VFL 196 (232)
Q Consensus 148 ~~~~~~----------~~~~~l~~---l~~~l~pgG~l~i~~~~r~-----~~~~~~~~~~~~~-~f~ 196 (232)
+....+ ....++.. +...++| .+++...... ....+.+.+.+.+ +|.
T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred CCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 764221 23333333 3344466 5555432221 1245556666664 665
No 311
>PRK11524 putative methyltransferase; Provisional
Probab=90.40 E-value=0.75 Score=38.71 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=30.7
Q ss_pred CCCccEEEEcccCCCc----------------ccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 137 KPPFDLVIAADVVYIE----------------ESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~----------------~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+++||+|++++++... .-+...+..+.++|+|||.+++....
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 3579999987765320 11356889999999999999987543
No 312
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.24 E-value=1.2 Score=38.48 Aligned_cols=98 Identities=19% Similarity=0.073 Sum_probs=52.7
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC-CC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK-PP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~ 139 (232)
.++. +||=.|||. |...+.+|+. |+.+++++|.++. ...+ +..+.. .-+....-++.... ..... ..
T Consensus 175 ~~g~--~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~----~~~Ga~--~~i~~~~~~~~~~i-~~~~~~~g 245 (358)
T TIGR03451 175 KRGD--SVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA----REFGAT--HTVNSSGTDPVEAI-RALTGGFG 245 (358)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCc--eEEcCCCcCHHHHH-HHHhCCCC
Confidence 3567 888889876 6666667765 7746999998773 2222 111211 00111110110000 00011 25
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+|+-+ ... ...+....+.++++|++++..
T Consensus 246 ~d~vid~--~g~----~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVIDA--VGR----PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEEEC--CCC----HHHHHHHHHHhccCCEEEEEC
Confidence 8988843 322 235566678899999998764
No 313
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.16 E-value=0.61 Score=40.80 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=66.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHH------hcCCCCCCceEEEEeecCCCccccc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLK------RNKPVLNKSLKTSVLYWNNQDQINA 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~------~~~~~~~~~i~~~~~d~~~~~~~~~ 135 (232)
.++. ...|+|.|.|.+....|.. ++..-+|+++.+. -+.+..+.. .-.......+.....++........
T Consensus 191 g~~D--~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 191 GPAD--VFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred CCCC--cccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence 3556 8999999999877665544 5556677776531 112222222 1111123445555665544432222
Q ss_pred CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 136 LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
.....++|+++.+.+.++.--. +..+..-+++|.+++=..+.
T Consensus 269 I~~eatvi~vNN~~Fdp~L~lr-~~eil~~ck~gtrIiS~~~L 310 (419)
T KOG3924|consen 269 IQTEATVIFVNNVAFDPELKLR-SKEILQKCKDGTRIISSKPL 310 (419)
T ss_pred HhhcceEEEEecccCCHHHHHh-hHHHHhhCCCcceEeccccc
Confidence 3446899999888887655444 34777888999998865443
No 314
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.50 E-value=2.4 Score=38.81 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=54.6
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCC-C-----------
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNN-Q----------- 130 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~----------- 130 (232)
++. +|+=+|||. |+.+..+++. |+ .++.+|.++.. ....+..+. .+...+... .
T Consensus 163 p~a--kVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~r---le~a~~lGa------~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 163 PPA--KVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEV---KEQVQSMGA------EFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHH---HHHHHHcCC------eEEeccccccccccccceeecC
Confidence 456 999999998 7877766655 87 79999998842 111121111 111222110 0
Q ss_pred cc--------cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 131 DQ--------INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 131 ~~--------~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
.+ ....-..+|+|+.+-.+-......-+.+...+.+|||+.++
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 00 01112459999876544332232345577788888887765
No 315
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.33 E-value=1.6 Score=31.46 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=51.3
Q ss_pred cccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---c-ccCC-CCccEEEEcccC
Q 026858 77 GCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---I-NALK-PPFDLVIAADVV 149 (232)
Q Consensus 77 GtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~-~~~~-~~fD~Ii~~~~~ 149 (232)
|.|+.++.+|+. |+ +++++|.++. .+.+ +..+ ....++..+... . .... ..+|+|+-+-.
T Consensus 1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~----~~~G-------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELA----KELG-------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG- 67 (130)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESSHHHHHHH----HHTT-------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-
T ss_pred ChHHHHHHHHHHcCC-EEEEEECCHHHHHHH----Hhhc-------ccccccccccccccccccccccccceEEEEecC-
Confidence 467888888776 75 9999999983 2222 2222 111233333221 0 1112 36999996532
Q ss_pred CCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 150 YIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 150 ~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
....++...++++++|++.++..
T Consensus 68 -----~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 68 -----SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp -----SHHHHHHHHHHEEEEEEEEEESS
T ss_pred -----cHHHHHHHHHHhccCCEEEEEEc
Confidence 25678888999999999998753
No 316
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.18 E-value=1.3 Score=38.94 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=48.4
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+||=||||. |. .+..+|+.+-.+|+..|.+.. .+++-.... ..+++...+|..+.......-..+|+||...
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~--~~~~i~~~~----~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE--KCARIAELI----GGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH--HHHHHHhhc----cccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 899999976 55 334556666459999999862 222211211 1256888999888765444445679999766
Q ss_pred cCC
Q 026858 148 VVY 150 (232)
Q Consensus 148 ~~~ 150 (232)
+.+
T Consensus 77 p~~ 79 (389)
T COG1748 77 PPF 79 (389)
T ss_pred Cch
Confidence 554
No 317
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.04 E-value=4.4 Score=34.91 Aligned_cols=92 Identities=23% Similarity=0.250 Sum_probs=52.5
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcc---hhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-ccCCC
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDI---SPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~---s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~ 138 (232)
++. +||=+|+|. |.++..+|+. |+ ++++++. ++. ...-++..+. .. .+..+.... ....+
T Consensus 172 ~g~--~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~---~~~~~~~~Ga------~~--v~~~~~~~~~~~~~~ 237 (355)
T cd08230 172 NPR--RALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDP---KADIVEELGA------TY--VNSSKTPVAEVKLVG 237 (355)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHH---HHHHHHHcCC------EE--ecCCccchhhhhhcC
Confidence 567 899899876 7777777665 77 8999986 331 1111122221 11 111111100 01124
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+|+|+-+-. . ...+....++++++|++++..
T Consensus 238 ~~d~vid~~g--~----~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 238 EFDLIIEATG--V----PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CCCEEEECcC--C----HHHHHHHHHHccCCcEEEEEe
Confidence 6899886421 1 236677889999999988764
No 318
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=89.04 E-value=1.2 Score=35.42 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=56.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhH----------HHHH-HHHHHhcCCCCCCceEEEEeecCCC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPV----------MPAL-KHNLKRNKPVLNKSLKTSVLYWNNQ 130 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~----------~~~~-~~n~~~~~~~~~~~i~~~~~d~~~~ 130 (232)
.++. +|+|+=.|.|..+..++.. | -+.|+..-..+. +..+ ++....|...+.. ..+ .+ ...
T Consensus 47 kpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~-~~~-A~--~~p 120 (238)
T COG4798 47 KPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGK-PLV-AL--GAP 120 (238)
T ss_pred CCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCC-ccc-cc--CCC
Confidence 4777 9999999999999888765 2 124554433321 1111 1111112111100 000 00 000
Q ss_pred ccccc-CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 131 DQINA-LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 131 ~~~~~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+.... ...++|.++-.-.+ +......+...+.+.|||||.+++.++.-
T Consensus 121 q~~d~~~~~~~yhdmh~k~i-~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNI-HPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred Ccccccccchhhhhhhcccc-CcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 00000 11234444433333 36678889999999999999999986543
No 319
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.99 E-value=4.8 Score=31.62 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=53.4
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhc-CCCC---------CCceEEEEeecCCCcccccC
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRN-KPVL---------NKSLKTSVLYWNNQDQINAL 136 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~-~~~~---------~~~i~~~~~d~~~~~~~~~~ 136 (232)
+|-=+|.|- |+ ++..+|..|. +|+++|+++. +....+....- .+.+ ..++.+.. ++. ..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~-~~~------~a 73 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATT-DIE------EA 73 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEES-EHH------HH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhh-hhh------hh
Confidence 455677776 65 5566677798 9999999983 22222100000 0000 11222211 110 00
Q ss_pred CCCccEEEEcccC-C------CcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHH-HHHHHHh
Q 026858 137 KPPFDLVIAADVV-Y------IEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHK-LFWEMCA 192 (232)
Q Consensus 137 ~~~fD~Ii~~~~~-~------~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~-~~~~~~~ 192 (232)
-...|+++.+-+. + +.+.+..+++.+.+.+++ |.+++....-.+.+.+ .+...++
T Consensus 74 i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile 136 (185)
T PF03721_consen 74 IKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILE 136 (185)
T ss_dssp HHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHH
T ss_pred hhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhh
Confidence 1246888765443 2 123478889999999999 4555554444455555 3334443
No 320
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.65 E-value=11 Score=30.39 Aligned_cols=94 Identities=19% Similarity=0.137 Sum_probs=53.1
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----ccC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----NAL 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~~~ 136 (232)
.++. +||-.|+|+ |.....+++. |. ++++++.++. ....+. .... . .++....... ...
T Consensus 133 ~~~~--~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~-----~--~~~~~~~~~~~~~~~~~ 198 (271)
T cd05188 133 KPGD--TVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKE----LGAD-----H--VIDYKEEDLEEELRLTG 198 (271)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----hCCc-----e--eccCCcCCHHHHHHHhc
Confidence 4667 999999986 5555555554 65 8999998863 222211 1110 0 0111111100 011
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
.+.+|+++.+-. . ...+..+.+.++++|+++....
T Consensus 199 ~~~~d~vi~~~~--~----~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 199 GGGADVVIDAVG--G----PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCCCCEEEECCC--C----HHHHHHHHHhcccCCEEEEEcc
Confidence 246999996422 1 1456677888899999887653
No 321
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.61 E-value=3.6 Score=33.61 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=27.9
Q ss_pred cCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
.... +||=+|||. |. ....|++.|.++++.+|.+.
T Consensus 9 L~~~--~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 9 LRNA--HVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HhCC--CEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 3456 899999985 66 55777888999999999764
No 322
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.53 E-value=0.92 Score=38.85 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=62.6
Q ss_pred EEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccC
Q 026858 71 AIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV 149 (232)
Q Consensus 71 VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~ 149 (232)
|+||.||.|.+++.+.+.|+.-+.++|+++. ....+. |.+. .....|+...... ....+|+++.+.+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~----N~~~-----~~~~~Di~~~~~~--~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEA----NFGN-----KVPFGDITKISPS--DIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHH----hCCC-----CCCccChhhhhhh--hCCCcCEEEecCCC
Confidence 6899999999999988889856678999983 333333 3321 0111222222110 11358999987665
Q ss_pred CC----------cccHHHHHHHHHHhh---CCCcEEEEEEeecC------hhHHHHHHHHHhc-CceEEE
Q 026858 150 YI----------EESAAQLVRAMEALV---ADDGVVLLGYQLRS------PEAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 150 ~~----------~~~~~~~l~~l~~~l---~pgG~l~i~~~~r~------~~~~~~~~~~~~~-~f~~~~ 199 (232)
.. .+....++....+++ +|. +++...... ......+...+.+ +|.+..
T Consensus 70 q~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~ 137 (315)
T TIGR00675 70 QPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYY 137 (315)
T ss_pred cccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEE
Confidence 21 123345555555555 453 455432221 1223444555543 776643
No 323
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.49 E-value=1.7 Score=36.75 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=52.1
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +||-.|+|. |.....+|+. |+ ++++++.++. ...++. .+.. ..+......+.... .......+|
T Consensus 165 ~~~--~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~--~~~~~~~~~~~~~~-~~~~~~~~D 234 (338)
T cd08254 165 PGE--TVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGAD--EVLNSLDDSPKDKK-AAGLGGGFD 234 (338)
T ss_pred CCC--EEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC--EEEcCCCcCHHHHH-HHhcCCCce
Confidence 556 888888764 6666666665 77 7999988773 222211 1110 00000000000000 001124699
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+.+-. ....+..+.+.|+++|+++...
T Consensus 235 ~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 235 VIFDFVG------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEEECCC------CHHHHHHHHHHhhcCCEEEEEC
Confidence 8885321 1346778889999999998763
No 324
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.35 E-value=3.2 Score=33.05 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=28.2
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcch
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s 99 (232)
+.... +|+=+|||. |. .+..+++.|.++++.+|.+
T Consensus 18 ~L~~~--~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQA--TVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCC--cEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34556 899999996 55 6677788898889999988
No 325
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.22 E-value=1.9 Score=37.46 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=52.3
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.++. +||=.|+|. |.....+|+. |+.+|+++|.++. ...+ + ..+.. .-+.....++.... .....+.+
T Consensus 190 ~~g~--~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~---~~Ga~--~~i~~~~~~~~~~i-~~~~~~g~ 260 (371)
T cd08281 190 RPGQ--SVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALA-R---ELGAT--ATVNAGDPNAVEQV-RELTGGGV 260 (371)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-H---HcCCc--eEeCCCchhHHHHH-HHHhCCCC
Confidence 3566 788889876 6666666665 7757999998873 2222 1 11211 00000000100000 00012358
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+|+-+- .. ...+....++++++|++++..
T Consensus 261 d~vid~~--G~----~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 261 DYAFEMA--GS----VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CEEEECC--CC----hHHHHHHHHHHhcCCEEEEEc
Confidence 9998532 11 245666778899999988764
No 326
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.18 E-value=4 Score=34.76 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=50.9
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCC--cccc-cC-
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQ--DQIN-AL- 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~--~~~~-~~- 136 (232)
.++. +||=+|+|. |..+..+++. |+.+++++|.++. ...+ + ..+.. .+ ++.... .... ..
T Consensus 162 ~~g~--~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~---~~ga~-----~~--i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 162 SGRD--TVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA-K---ALGAD-----FV--INSGQDDVQEIRELTS 228 (339)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-H---HhCCC-----EE--EcCCcchHHHHHHHhC
Confidence 4577 888888865 6666666655 7734999998763 2222 1 11111 00 111110 0000 01
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+|+|+-+. .. ...+....+.++++|++++..
T Consensus 229 ~~~~d~vid~~--g~----~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 229 GAGADVAIECS--GN----TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCCEEEECC--CC----HHHHHHHHHHhhcCCEEEEEc
Confidence 13699998532 11 234556678899999998754
No 327
>PRK10458 DNA cytosine methylase; Provisional
Probab=88.09 E-value=3.8 Score=37.17 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchh
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~ 100 (232)
.++++||.||.|-+++.+-..|...+.++|+++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~ 120 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK 120 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechH
Confidence 569999999999999888887886778899998
No 328
>PRK13699 putative methylase; Provisional
Probab=87.87 E-value=2.3 Score=34.56 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=36.6
Q ss_pred CCCccEEEEcccCCC------c---------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEE
Q 026858 137 KPPFDLVIAADVVYI------E---------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIE 198 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~------~---------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~ 198 (232)
++++|+|+..++... . +-....+.+++++|||||.+++....+. ...+...+. .+|.+.
T Consensus 18 d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~---~~~~~~al~~~GF~l~ 92 (227)
T PRK13699 18 DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR---VDRFMAAWKNAGFSVV 92 (227)
T ss_pred ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc---HHHHHHHHHHCCCEEe
Confidence 457888887655421 0 1135678899999999999887554332 123444444 377644
No 329
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=87.75 E-value=0.62 Score=38.29 Aligned_cols=46 Identities=26% Similarity=0.370 Sum_probs=30.5
Q ss_pred HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH
Q 026858 40 LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV 101 (232)
Q Consensus 40 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~ 101 (232)
|+.++.+..+ ..... +++|.-||+|.+++.+...+. +++.-|+++.
T Consensus 8 l~~~I~~~ip-------------~~~~~--~~vepF~G~g~V~~~~~~~~~-~vi~ND~~~~ 53 (260)
T PF02086_consen 8 LAKWIIELIP-------------KNKHK--TYVEPFAGGGSVFLNLKQPGK-RVIINDINPD 53 (260)
T ss_dssp GHHHHHHHS--------------S-S-S--EEEETT-TTSHHHHCC---SS-EEEEEES-HH
T ss_pred HHHHHHHHcC-------------CCCCC--EEEEEecchhHHHHHhccccc-ceeeeechHH
Confidence 5666766655 22445 999999999999988876555 9999999974
No 330
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=87.31 E-value=2.3 Score=36.21 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=41.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNN 129 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~ 129 (232)
..++. .++|--+|.|.-+..++.. +..+|+++|.++ ++..++..... ...++.+...++.+
T Consensus 18 ~~~gg--iyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~----~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 18 IKPDG--IYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD----FEGRVVLIHDNFAN 80 (305)
T ss_pred cCCCC--EEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh----cCCcEEEEeCCHHH
Confidence 34667 8999999999988877765 335999999999 45555554432 22345666555544
No 331
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=86.95 E-value=3.2 Score=32.97 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=26.5
Q ss_pred cCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
...+ +||=+|||. |. ....+++.|.++++.+|.+.
T Consensus 19 L~~s--~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSA--RILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHhC--cEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 3456 899999987 44 44666777998999999763
No 332
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=86.26 E-value=1.7 Score=39.56 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=65.2
Q ss_pred CcEEEeCccccHHH---HHHHHh---CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 69 RRAIELGAGCGAAG---MAFYLL---GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 69 ~~VLElGcGtG~~s---~~la~~---~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..|+=+|+|-|-+. +.+|.. .. ++++++.++-...+.+| .|.....++++...-|...-.. ...+.|+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkV-klyavEKNPNAivtL~~--~n~~~W~~~Vtii~~DMR~w~a---p~eq~DI 442 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKV-KLYAVEKNPNAIVTLQN--RNFECWDNRVTIISSDMRKWNA---PREQADI 442 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCce-EEEEEecCcchhhhhhh--hchhhhcCeeEEEeccccccCC---chhhccc
Confidence 37888999999876 333433 34 89999999832222222 2222345667777777655442 1357899
Q ss_pred EEE--cccCCCcccHHHHHHHHHHhhCCCcEEEE
Q 026858 143 VIA--ADVVYIEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 143 Ii~--~~~~~~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
+|+ -..+...+.-+..+.-+.+.|||+|+.+=
T Consensus 443 ~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 443 IVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 984 23344556667889999999999987664
No 333
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.97 E-value=6.9 Score=31.43 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=28.1
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcch
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s 99 (232)
+.... +|+=+|||. |. +...+++.|.++++.+|.+
T Consensus 25 ~L~~~--~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKA--KVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCC--CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34556 899999996 55 6677788898899999987
No 334
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.83 E-value=11 Score=27.28 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=45.6
Q ss_pred cEEEeCccccH-HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGA-AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~-~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|.|+|.|-=. .+-.+++.|+ .++++|+++. +.. . -+.+..-|..++.-.- =...|+|.+.-
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a~---~----g~~~v~DDitnP~~~i--Y~~A~lIYSiR- 78 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TAP---E----GLRFVVDDITNPNISI--YEGADLIYSIR- 78 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cCc---c----cceEEEccCCCccHHH--hhCccceeecC-
Confidence 79999988744 6677788898 9999999882 111 1 1355555555544211 12357776632
Q ss_pred CCCcccHHHHHHHHHHhh
Q 026858 149 VYIEESAAQLVRAMEALV 166 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l 166 (232)
.+..+...+-.+.+.+
T Consensus 79 --pppEl~~~ildva~aV 94 (129)
T COG1255 79 --PPPELQSAILDVAKAV 94 (129)
T ss_pred --CCHHHHHHHHHHHHhh
Confidence 3334444444444444
No 335
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.71 E-value=9.2 Score=29.65 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=24.5
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+|+=+|||. |. ....+++.|.++++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478899985 65 56777888988899999874
No 336
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=85.31 E-value=2.2 Score=31.35 Aligned_cols=30 Identities=30% Similarity=0.605 Sum_probs=21.6
Q ss_pred cEEEeCccccH-HHHHHHHhCCCcEEEEcchh
Q 026858 70 RAIELGAGCGA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 70 ~VLElGcGtG~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+|+|+|-|.=. .+..++..|+ .|+++|+++
T Consensus 16 kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~ 46 (127)
T PF03686_consen 16 KIVEVGIGFNPEVAKKLKERGF-DVIATDINP 46 (127)
T ss_dssp EEEEET-TT--HHHHHHHHHS--EEEEE-SS-
T ss_pred cEEEECcCCCHHHHHHHHHcCC-cEEEEECcc
Confidence 89999999844 7778888898 999999998
No 337
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.28 E-value=2.5 Score=34.54 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=57.7
Q ss_pred cEEEeCccccHHHHHHHHh--------CC--CcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc----cc
Q 026858 70 RAIELGAGCGAAGMAFYLL--------GL--ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----NA 135 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~--------~~--~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~~ 135 (232)
+++||.+.+|..+..+++. +. ..++++|+.+|.. . .-+...+.|....... .+
T Consensus 44 rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP---------I----~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 44 RVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP---------I----EGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred HHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc---------c----CceEEeecccCCHhHHHHHHHH
Confidence 8999999999999988875 11 1399999876311 0 1134455566554432 22
Q ss_pred CCC-CccEEEEcccCC--Ccc---------cHHHHHHHHHHhhCCCcEEEE
Q 026858 136 LKP-PFDLVIAADVVY--IEE---------SAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 136 ~~~-~fD~Ii~~~~~~--~~~---------~~~~~l~~l~~~l~pgG~l~i 174 (232)
+.+ +.|+|++..... ..+ .+-.++.....+|+|||.++-
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 333 789999844331 112 244455556678899999875
No 338
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=85.28 E-value=7.9 Score=33.21 Aligned_cols=91 Identities=9% Similarity=0.026 Sum_probs=53.4
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
.++. +||=+|||+ |++++.+++. +..+++++|.++. ++.++. ... .. .. .... ....
T Consensus 162 ~~g~--~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~------~~-~~--~~~~----~~~g 222 (341)
T cd08237 162 KDRN--VIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE------TY-LI--DDIP----EDLA 222 (341)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc------ee-eh--hhhh----hccC
Confidence 3577 899999987 7776665553 5558999998873 222221 110 00 00 0000 0124
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+|+-+ ... ...+..+....++++++|++++..
T Consensus 223 ~d~viD~--~G~-~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 223 VDHAFEC--VGG-RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CcEEEEC--CCC-CccHHHHHHHHHhCcCCcEEEEEe
Confidence 8988843 221 113456777888999999988764
No 339
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=84.97 E-value=23 Score=30.02 Aligned_cols=96 Identities=25% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +||-.|||. |.....+++. |+.++++++.++......+.. +.. ..+.....++. ......+.+|+
T Consensus 165 ~~~--~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~---g~~--~vi~~~~~~~~---~~~~~~~~vd~ 234 (339)
T cd08232 165 AGK--RVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM---GAD--ETVNLARDPLA---AYAADKGDFDV 234 (339)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc---CCC--EEEcCCchhhh---hhhccCCCccE
Confidence 667 888888765 5555556654 665789998776322222211 110 00000000000 01111235899
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++.+.. -...+..+.+.|+++|+++...
T Consensus 235 vld~~g------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 235 VFEASG------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 986422 1345677889999999988754
No 340
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=84.93 E-value=7 Score=33.89 Aligned_cols=93 Identities=14% Similarity=0.109 Sum_probs=50.6
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +||=.|+|. |...+.+|+. |+ ++++++.++. .....+ ..+.. ... +-.+........+.+|
T Consensus 183 ~g~--~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~---~~Ga~-----~vi--~~~~~~~~~~~~~~~D 249 (360)
T PLN02586 183 PGK--HLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN---RLGAD-----SFL--VSTDPEKMKAAIGTMD 249 (360)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH---hCCCc-----EEE--cCCCHHHHHhhcCCCC
Confidence 566 788899876 7777777766 77 7888877652 111111 11111 000 0000001111113589
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+-. ... ...+....++++++|+++...
T Consensus 250 ~vid~--~g~----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 250 YIIDT--VSA----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EEEEC--CCC----HHHHHHHHHHhcCCcEEEEeC
Confidence 88843 221 235667788999999988764
No 341
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.48 E-value=11 Score=27.93 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=23.0
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcch
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s 99 (232)
+|+=+|||. |. ....+++.|.++++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 477789985 55 5566677788899999976
No 342
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.40 E-value=6.4 Score=33.69 Aligned_cols=99 Identities=15% Similarity=0.024 Sum_probs=51.6
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~f 140 (232)
.++. +||=.|+|. |..+..+|+. |+..++.+|.++.-....+ ..+.. ..+.....++.... .... ...+
T Consensus 165 ~~g~--~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~---~~g~~--~~v~~~~~~~~~~i-~~~~~~~~~ 236 (351)
T cd08285 165 KLGD--TVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK---EYGAT--DIVDYKNGDVVEQI-LKLTGGKGV 236 (351)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH---HcCCc--eEecCCCCCHHHHH-HHHhCCCCC
Confidence 3567 888888765 5566666655 7756899988762111111 11110 00110000100000 0001 1358
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+|+-+- .. ...+..+.++++++|+++...
T Consensus 237 d~vld~~--g~----~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 237 DAVIIAG--GG----QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred cEEEECC--CC----HHHHHHHHHHhhcCCEEEEec
Confidence 9988531 11 346778888999999988653
No 343
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=83.46 E-value=5 Score=29.84 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHH
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMC 191 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~ 191 (232)
...||+|+.+--- .+.+.+++.+.+.+.+++.+++....-. ..+.+.+.+
T Consensus 65 ~~~~D~viv~vKa---~~~~~~l~~l~~~~~~~t~iv~~qNG~g--~~~~l~~~~ 114 (151)
T PF02558_consen 65 AGPYDLVIVAVKA---YQLEQALQSLKPYLDPNTTIVSLQNGMG--NEEVLAEYF 114 (151)
T ss_dssp HSTESEEEE-SSG---GGHHHHHHHHCTGEETTEEEEEESSSSS--HHHHHHCHS
T ss_pred cCCCcEEEEEecc---cchHHHHHHHhhccCCCcEEEEEeCCCC--cHHHHHHHc
Confidence 3579999986432 3667788899999999988877765443 234444444
No 344
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=83.34 E-value=5.8 Score=33.95 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=51.0
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~ 139 (232)
.++. +||=.|+|+ |..++.+|+. |+..++++|.++. ...+ + ..+.. .-+.....+.. ...... ...
T Consensus 159 ~~g~--~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~---~~Ga~--~~i~~~~~~~~--~~~~~~~~~~ 228 (347)
T PRK10309 159 CEGK--NVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA-K---SLGAM--QTFNSREMSAP--QIQSVLRELR 228 (347)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-H---HcCCc--eEecCcccCHH--HHHHHhcCCC
Confidence 3567 888889877 6666666665 7744788887763 2221 2 11110 00000000000 000001 125
Q ss_pred cc-EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FD-LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD-~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+| +|+- +... ...+....++++++|++++..
T Consensus 229 ~d~~v~d--~~G~----~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 229 FDQLILE--TAGV----PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCeEEEE--CCCC----HHHHHHHHHHhhcCCEEEEEc
Confidence 77 5543 2222 346777789999999988864
No 345
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.33 E-value=12 Score=31.46 Aligned_cols=98 Identities=24% Similarity=0.263 Sum_probs=52.2
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCC---CCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVL---NKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|+=+|+|. |. ++..+++.|. .|++++..+..+... .++... ...... .... ..+.......+|+|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~----~~g~~~~~~~~~~~~-~~~~--~~~~~~~~~~~d~vi 73 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVRPKRAKALR----ERGLVIRSDHGDAVV-PGPV--ITDPEELTGPFDLVI 73 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEecHHHHHHHH----hCCeEEEeCCCeEEe-ccee--ecCHHHccCCCCEEE
Confidence 577788887 44 5566666676 899998733222222 111000 000000 0000 011111125689998
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
.+-..+ ..+.+++.+...+.++..++.....
T Consensus 74 lavk~~---~~~~~~~~l~~~~~~~~~ii~~~nG 104 (305)
T PRK12921 74 LAVKAY---QLDAAIPDLKPLVGEDTVIIPLQNG 104 (305)
T ss_pred EEeccc---CHHHHHHHHHhhcCCCCEEEEeeCC
Confidence 765433 5677888888888887766655443
No 346
>PRK08265 short chain dehydrogenase; Provisional
Probab=83.20 E-value=18 Score=29.50 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=44.8
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
..++ ++|=.|+..|+ ++..+++.|+ +|+++|.++. ........ ..++.+...|+.+......
T Consensus 4 ~~~k--~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 4 LAGK--VAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCCC--EEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHH
Confidence 4566 88888875543 3344455588 9999998762 22222211 1245677788877653211
Q ss_pred ---CCCCccEEEEcccC
Q 026858 136 ---LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~~ 149 (232)
..+..|+++.+...
T Consensus 74 ~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 74 VVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 12468999876544
No 347
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=83.18 E-value=3.3 Score=32.83 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 155 AAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 155 ~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
....+..+.++|+|+|.+++....+.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~ 60 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDRE 60 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCE
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchh
Confidence 57778889999999999988765443
No 348
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=83.06 E-value=5.3 Score=35.95 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=56.7
Q ss_pred cEEEeCccccHHH---HHHHHhCCCcEEEEcchhH-HHHHHHHHHh---cCCCCCCceEEEEeecCCCccccc-CCCCcc
Q 026858 70 RAIELGAGCGAAG---MAFYLLGLADIVLTDISPV-MPALKHNLKR---NKPVLNKSLKTSVLYWNNQDQINA-LKPPFD 141 (232)
Q Consensus 70 ~VLElGcGtG~~s---~~la~~~~~~v~~~D~s~~-~~~~~~n~~~---~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD 141 (232)
.++|+|.|.|.-. ..+-+.-...++.+|.+.. +.....+... ++...-..+.+.... .+. ....||
T Consensus 203 ~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~------~pi~~~~~yD 276 (491)
T KOG2539|consen 203 LLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQR------LPIDIKNGYD 276 (491)
T ss_pred HHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhccc------CCCCccccee
Confidence 7899998876533 2222223458999999974 4444444332 111111111111110 111 134599
Q ss_pred EEEEcccCCCc---ccHHHHHHHHHH-hhCCCcEEEEEEeecC
Q 026858 142 LVIAADVVYIE---ESAAQLVRAMEA-LVADDGVVLLGYQLRS 180 (232)
Q Consensus 142 ~Ii~~~~~~~~---~~~~~~l~~l~~-~l~pgG~l~i~~~~r~ 180 (232)
+|+++..++.. .......+.+.+ ...+|+.++++.....
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99998887632 244445555444 4578888888876443
No 349
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=82.70 E-value=9.3 Score=32.43 Aligned_cols=100 Identities=17% Similarity=0.093 Sum_probs=59.0
Q ss_pred cEEEeCccc--cHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCC--CCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGC--GAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVL--NKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGt--G~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|+=+|+|. |.++..+++.|. .|++++-++ .++..++ .++..+ ............ . ....+.||+|+
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~--~--~~~~~~~D~vi 75 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAE--T--ADAAEPIHRLL 75 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCC--C--cccccccCEEE
Confidence 799999997 447778888787 899999864 2333322 111000 000011111111 1 11235799999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
.+-=-| +...+++.+..++.++..++.....-.
T Consensus 76 v~vK~~---~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 76 LACKAY---DAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred EECCHH---hHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 864333 456788889999999998877765443
No 350
>PLN02740 Alcohol dehydrogenase-like
Probab=82.32 E-value=6.2 Score=34.45 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=26.9
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~ 101 (232)
.++. +||=+|+|+ |..++.+|+. |+.+|+++|.++.
T Consensus 197 ~~g~--~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 197 QAGS--SVAIFGLGAVGLAVAEGARARGASKIIGVDINPE 234 (381)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence 3667 899999876 6666666665 7656999998773
No 351
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=82.26 E-value=8.4 Score=32.78 Aligned_cols=97 Identities=22% Similarity=0.195 Sum_probs=55.3
Q ss_pred cEEEeCccc-c-HHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCC---CCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGC-G-AAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVL---NKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGt-G-~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|+=||+|. | .++..+++.|. .|+.+..++. .. ...++..+ ............... ...+.+|+|+
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~-~~----~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~D~vi 77 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY-EA----VRENGLQVDSVHGDFHLPPVQAYRSA---EDMPPCDWVL 77 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH-HH----HHhCCeEEEeCCCCeeecCceEEcch---hhcCCCCEEE
Confidence 899999887 4 46777777787 8888887651 11 12222100 011111111111111 1235799999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
.+-..+ ....++..+..++++++.++.....
T Consensus 78 lavK~~---~~~~~~~~l~~~~~~~~~iv~lqNG 108 (313)
T PRK06249 78 VGLKTT---ANALLAPLIPQVAAPDAKVLLLQNG 108 (313)
T ss_pred EEecCC---ChHhHHHHHhhhcCCCCEEEEecCC
Confidence 865444 3456788888889999887766543
No 352
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=81.96 E-value=3.1 Score=34.61 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=27.5
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh------CCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL------GLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~------~~~~v~~~D~s~ 100 (232)
.++. .++|+|||.|.+|..++.. ....++++|-..
T Consensus 17 ~~~~--~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDS--CFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCC--EEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 3556 8999999999999888764 123899999764
No 353
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=81.86 E-value=13 Score=32.00 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=26.8
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~ 101 (232)
.++. +||=+|||+ |...+.+|+. |+ +++++|.++.
T Consensus 165 ~~g~--~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~ 201 (349)
T TIGR03201 165 KKGD--LVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPE 201 (349)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHH
Confidence 4567 899999976 7666666665 77 7999998773
No 354
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.67 E-value=20 Score=29.98 Aligned_cols=97 Identities=27% Similarity=0.293 Sum_probs=53.8
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCC-CCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVL-NKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+|+=+|+|. |. ++..+++.|. +|+.+|.++ .+.... .++... ..... ..... ...... ...+|+|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~----~~g~~~~~~~~~-~~~~~--~~~~~~-~~~~d~vil 72 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALN----ENGLRLEDGEIT-VPVLA--ADDPAE-LGPQDLVIL 72 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHH----HcCCcccCCcee-ecccC--CCChhH-cCCCCEEEE
Confidence 577788876 43 5555566676 899999854 222222 222111 11110 00000 011111 257999998
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+-..+ ....+++.+...+.++..++.....
T Consensus 73 a~k~~---~~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 73 AVKAY---QLPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred ecccc---cHHHHHHHHhhhcCCCCEEEEecCC
Confidence 65433 5677888888888887777765544
No 355
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.61 E-value=2.6 Score=33.54 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=28.2
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+.... +||=+|||. |. .+..+++.|.++++.+|.+.
T Consensus 18 kl~~~--~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNS--HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCC--CEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 34556 899999996 55 55677788988999999873
No 356
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.58 E-value=4.4 Score=31.73 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=55.3
Q ss_pred CCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-CCCCccEEEEcccCCCcccHHHHHHHHHHhhCC
Q 026858 90 LADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-LKPPFDLVIAADVVYIEESAAQLVRAMEALVAD 168 (232)
Q Consensus 90 ~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~p 168 (232)
..+|+..+.+. .....+ -.|.-.|.+.+.+++. ..++||+||+.+++...+-+.+....++++.++
T Consensus 98 ~~~v~lfEfDk-------RFe~yg------~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~ 164 (217)
T KOG3350|consen 98 HDQVYLFEFDK-------RFELYG------TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRN 164 (217)
T ss_pred ceeEEEEEehh-------hHHhcc------ceeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcC
Confidence 34777777766 122222 1566677777766543 345799999988888888888889999999999
Q ss_pred CcEEEEEEeecC
Q 026858 169 DGVVLLGYQLRS 180 (232)
Q Consensus 169 gG~l~i~~~~r~ 180 (232)
.-+++++.-.+.
T Consensus 165 ~~kvilCtGeim 176 (217)
T KOG3350|consen 165 QKKVILCTGEIM 176 (217)
T ss_pred CceEEEechhHh
Confidence 888888874443
No 357
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.74 E-value=13 Score=33.12 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=52.3
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHH-hCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYL-LGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~-~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++ +|+=+|+|. |......++ .|+ +|+++|.++... ... ...+ . ....+ ++ .-...|
T Consensus 193 l~Gk--~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~--~~A-~~~G--~----~v~~l-----ee---al~~aD 252 (406)
T TIGR00936 193 IAGK--TVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRA--LEA-AMDG--F----RVMTM-----EE---AAKIGD 252 (406)
T ss_pred CCcC--EEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhH--HHH-HhcC--C----EeCCH-----HH---HHhcCC
Confidence 4778 999999998 664444444 377 899999888311 111 1111 1 11111 11 113469
Q ss_pred EEEEcccCCCcccHHHHHH-HHHHhhCCCcEEEEEEee
Q 026858 142 LVIAADVVYIEESAAQLVR-AMEALVADDGVVLLGYQL 178 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~-~l~~~l~pgG~l~i~~~~ 178 (232)
+|+.... ...++. .....+++|++++.+...
T Consensus 253 VVItaTG------~~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 253 IFITATG------NKDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred EEEECCC------CHHHHHHHHHhcCCCCcEEEEECCC
Confidence 9887421 234444 477889999998887654
No 358
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=80.50 E-value=13 Score=32.46 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=50.2
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +||=.|+|. |..++.+|+. |+ +++++|.++.- ....++..+.. .. .+...........+.+|+
T Consensus 178 ~g~--~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~--~~~~a~~lGa~-----~~--i~~~~~~~v~~~~~~~D~ 245 (375)
T PLN02178 178 SGK--RLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEK--EREAIDRLGAD-----SF--LVTTDSQKMKEAVGTMDF 245 (375)
T ss_pred CCC--EEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHH--hHHHHHhCCCc-----EE--EcCcCHHHHHHhhCCCcE
Confidence 566 888888876 6676777765 77 78888876421 01111111111 00 011110100011124888
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+-+- . ....+....+.++++|+++...
T Consensus 246 vid~~--G----~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 246 IIDTV--S----AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred EEECC--C----cHHHHHHHHHhhcCCCEEEEEc
Confidence 88532 1 1235666778899999988754
No 359
>PLN02827 Alcohol dehydrogenase-like
Probab=80.40 E-value=6.8 Score=34.23 Aligned_cols=99 Identities=14% Similarity=0.040 Sum_probs=51.0
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEe--ecCCCcccccCCCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVL--YWNNQDQINALKPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~~~ 139 (232)
.++. +||=.|+|+ |.+.+.+|+. |+..++++|.++.-.... +..+.. .-+..... ++.... .....+.
T Consensus 192 ~~g~--~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a---~~lGa~--~~i~~~~~~~~~~~~v-~~~~~~g 263 (378)
T PLN02827 192 SKGS--SVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKA---KTFGVT--DFINPNDLSEPIQQVI-KRMTGGG 263 (378)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH---HHcCCc--EEEcccccchHHHHHH-HHHhCCC
Confidence 3577 888889876 6666666665 775688998776311111 111211 00110000 000000 0001125
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
+|+|+-+- .. ...+....+.+++| |++++..
T Consensus 264 ~d~vid~~--G~----~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 264 ADYSFECV--GD----TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCEEEECC--CC----hHHHHHHHHhhccCCCEEEEEC
Confidence 89888532 21 23456677788888 9988754
No 360
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=80.29 E-value=7 Score=33.85 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=27.9
Q ss_pred cCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
...+ +||=+|||. |. ++..+++.|.++++.+|.+.
T Consensus 22 L~~~--~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREK--HVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCC--cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3556 899999996 55 55777788988999999874
No 361
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=79.47 E-value=31 Score=27.80 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=46.9
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...++ +||=.|++.|+ ++..+++.|+ +|++++.++ .+......++... .++.+...|+.+.....
T Consensus 8 ~~~~k--~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 8 SLAGQ--VALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG----GAAEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CCCCC--EEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHHHH
Confidence 45677 89988875544 2233444588 899999876 2333333333222 23567777777654321
Q ss_pred ---cCCCCccEEEEcccC
Q 026858 135 ---ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~ 149 (232)
...++.|.++.+...
T Consensus 81 ~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 81 RIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 112468999976554
No 362
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.35 E-value=9.7 Score=31.87 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=28.5
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
...+. +|+=+|||. |. .+..|++.|.++++.+|.+.
T Consensus 27 kL~~s--~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 27 LFADA--HICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred HhcCC--CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 44567 999999996 66 55777888988999999873
No 363
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=78.05 E-value=11 Score=32.20 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=23.4
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+||=+|||. |. +...++..|.++++.+|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 478889885 55 55666777999999999763
No 364
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=78.03 E-value=7.3 Score=34.18 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHH-hCCCcEEEEcchh
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYL-LGLADIVLTDISP 100 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~-~~~~~v~~~D~s~ 100 (232)
++. +|+=+|+|. |......++ .|+ +|+.+|.++
T Consensus 166 ~~~--~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~ 200 (370)
T TIGR00518 166 EPG--DVTIIGGGVVGTNAAKMANGLGA-TVTILDINI 200 (370)
T ss_pred CCc--eEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence 445 799998885 555544443 488 899999886
No 365
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=78.02 E-value=21 Score=25.10 Aligned_cols=82 Identities=13% Similarity=0.055 Sum_probs=47.4
Q ss_pred CccEEEEcccCCCcc--------------cHHHHHHHHHHhhCCCcEEEEEEeecC---hhHHHHHHHHHhcCceEEEec
Q 026858 139 PFDLVIAADVVYIEE--------------SAAQLVRAMEALVADDGVVLLGYQLRS---PEAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~--------------~~~~~l~~l~~~l~pgG~l~i~~~~r~---~~~~~~~~~~~~~~f~~~~~~ 201 (232)
+||+||.+++.-... ....+++...+++ +|.+.+..+..- ......+.+.+-....+..+.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~~~i~~i~ 79 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNNTNIKKII 79 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcCCCeeEEE
Confidence 589999877663211 1233566666777 888877665332 233556667666666776666
Q ss_pred CCCCCC-CCCCCce--EEEEEEec
Q 026858 202 HEDLHP-DYGYEET--DVYILRKK 222 (232)
Q Consensus 202 ~~~~~~-~~~~~~~--~l~~~~~~ 222 (232)
...... .|....+ .+..+.++
T Consensus 80 ~f~~~~~vF~~a~v~t~I~~~~k~ 103 (106)
T PF07669_consen 80 DFGERKKVFEDASVYTCIIIFKKS 103 (106)
T ss_pred ECCCcccCCCCCCcceeEEEEEec
Confidence 544443 5655443 35555554
No 366
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=78.00 E-value=8.2 Score=31.83 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=28.4
Q ss_pred ccCCCCCcEEEeCccc-cHHH-HHHHHhCCCcEEEEcchh
Q 026858 63 DFHSTRRRAIELGAGC-GAAG-MAFYLLGLADIVLTDISP 100 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s-~~la~~~~~~v~~~D~s~ 100 (232)
.+... +|+=+|+|- |... -.|++.|.++++.+|.+.
T Consensus 27 kl~~~--~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 27 KLKQA--HVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred HHhhC--cEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 34556 899999986 7755 566788999999999875
No 367
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=77.73 E-value=8.6 Score=33.31 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=27.7
Q ss_pred cCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
.... +||=+|||. |. ++..|++.|.++++.+|.+.
T Consensus 22 L~~~--~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREK--HVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCC--cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 3456 899999995 55 55777788988999999863
No 368
>PLN02494 adenosylhomocysteinase
Probab=77.12 E-value=12 Score=34.06 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=51.8
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHH-HhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFY-LLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la-~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
...++ +|+=+|+|. |......+ ..|+ +|+++|.++.... ..... + . ....+ .. .-...
T Consensus 251 ~LaGK--tVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~--eA~~~-G--~----~vv~l-----eE---al~~A 310 (477)
T PLN02494 251 MIAGK--VAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICAL--QALME-G--Y----QVLTL-----ED---VVSEA 310 (477)
T ss_pred ccCCC--EEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhH--HHHhc-C--C----eeccH-----HH---HHhhC
Confidence 34678 999999997 65333333 3488 8999998873111 11111 1 1 11111 10 11357
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+|+.... ...-+.....+.|++|+.++-+..
T Consensus 311 DVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 311 DIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CEEEECCC-----CccchHHHHHhcCCCCCEEEEcCC
Confidence 99997432 222233667788999999998864
No 369
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=76.92 E-value=4 Score=32.39 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=26.2
Q ss_pred CCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 65 HSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
... +|+=+|||. |. ....+++.|.++++.+|.+.
T Consensus 18 ~~s--~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSA--KVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhC--cEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 446 899999996 54 45666777998999999763
No 370
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=76.88 E-value=17 Score=30.84 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=23.3
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcch
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s 99 (232)
+||=+|||. |. +...|++.|.++++.+|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 478889985 55 5566677799999999976
No 371
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=76.74 E-value=22 Score=30.18 Aligned_cols=99 Identities=20% Similarity=0.096 Sum_probs=49.1
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +||-.|+|. |...+.+|+. |...++.++.++......+ ..+.. ..+.....++..........+.+|+
T Consensus 167 ~~~--~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~---~~g~~--~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 167 PGS--TVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK---EAGAT--DIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH---HhCCc--EEEcCCcchHHHHHHHHcCCCCCcE
Confidence 566 888877753 5565666665 6447888876652111111 11110 0011111111000000001245898
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++-+ ... ...+....+.|+++|+++...
T Consensus 240 vld~--~g~----~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 240 VIEA--VGF----EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEc--cCC----HHHHHHHHHHhhcCCEEEEEc
Confidence 8853 111 246777788999999987653
No 372
>PTZ00357 methyltransferase; Provisional
Probab=76.66 E-value=16 Score=34.93 Aligned_cols=101 Identities=18% Similarity=0.126 Sum_probs=61.1
Q ss_pred CcEEEeCccccHHHH---HHHHh---CCCcEEEEcchh-HHHHHHHHHHhcCCCC-------CCceEEEEeecCCCccc-
Q 026858 69 RRAIELGAGCGAAGM---AFYLL---GLADIVLTDISP-VMPALKHNLKRNKPVL-------NKSLKTSVLYWNNQDQI- 133 (232)
Q Consensus 69 ~~VLElGcGtG~~s~---~la~~---~~~~v~~~D~s~-~~~~~~~n~~~~~~~~-------~~~i~~~~~d~~~~~~~- 133 (232)
..|+=+|+|-|-+-- .++.. .. ++++++.|+ .+.....+. .|...+ .++|+...-|.......
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkV-rIyAVEKNPpAA~~tllr~-~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe 779 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRL-RIFAIEKNLPAAAFTRMRW-ANDPEWTQLAYTFGHTLEVIVADGRTIATAA 779 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcE-EEEEEecCcchHHHHHHHH-hcccccccccccCCCeEEEEeCccccccccc
Confidence 469999999998652 22322 34 899999994 333333222 121112 44577777775553211
Q ss_pred -------ccCCCCccEEEE--cccCCCcccHHHHHHHHHHhhCC----CcE
Q 026858 134 -------NALKPPFDLVIA--ADVVYIEESAAQLVRAMEALVAD----DGV 171 (232)
Q Consensus 134 -------~~~~~~fD~Ii~--~~~~~~~~~~~~~l~~l~~~l~p----gG~ 171 (232)
+..-+++|+||+ -..+...+.-+..+..+.+.||+ +|+
T Consensus 780 ~~~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 780 ENGSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 111247999996 44555666667788888888876 675
No 373
>PRK06701 short chain dehydrogenase; Provisional
Probab=76.62 E-value=43 Score=27.91 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=44.7
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-H-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-V-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|++++.+. . .......+... ..++.+...|+.+......
T Consensus 43 ~~~~k--~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~ 115 (290)
T PRK06701 43 KLKGK--VALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKE----GVKCLLIPGDVSDEAFCKDAV 115 (290)
T ss_pred CCCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHH
Confidence 45667 89999876655 3344455687 888888764 1 22222222221 1245667777766543211
Q ss_pred -----CCCCccEEEEccc
Q 026858 136 -----LKPPFDLVIAADV 148 (232)
Q Consensus 136 -----~~~~fD~Ii~~~~ 148 (232)
..+..|+||.+..
T Consensus 116 ~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 116 EETVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHHHcCCCCEEEECCc
Confidence 1246899986544
No 374
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.37 E-value=36 Score=26.95 Aligned_cols=103 Identities=14% Similarity=0.187 Sum_probs=55.5
Q ss_pred CCCCCcEEEeCccccHHHHH----HHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-----
Q 026858 65 HSTRRRAIELGAGCGAAGMA----FYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN----- 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~----la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~----- 134 (232)
.++ +||=.|++.| ++.. +++.|+ +|++++-++. ........... ..+.+...|+.+.....
T Consensus 4 ~~~--~vlItGa~g~-iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 4 KGK--KVAIIGVSEG-LGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CCc--EEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCHHHHHHHHHH
Confidence 456 8999988644 3433 334488 8999998763 33222222111 13566777777654221
Q ss_pred --cCCCCccEEEEcccCCCccc-----------------HHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 --ALKPPFDLVIAADVVYIEES-----------------AAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 --~~~~~fD~Ii~~~~~~~~~~-----------------~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+..|.++.+...+.... .-.+++.+.+.++.+|.+++..
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 11245788887654432111 1123445555666778777654
No 375
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=76.28 E-value=21 Score=30.42 Aligned_cols=99 Identities=24% Similarity=0.270 Sum_probs=59.3
Q ss_pred cEEEeCccc--cHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCC---CCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGC--GAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVL---NKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGt--G~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|+=+|+|. |+++..+++.| ..|+.+--++.++..++ ++..+ .......... .......+.+|+|+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~----~GL~i~~~~~~~~~~~~~----~~~~~~~~~~Dlvi 72 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKK----KGLRIEDEGGNFTTPVVA----ATDAEALGPADLVI 72 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHh----CCeEEecCCCcccccccc----ccChhhcCCCCEEE
Confidence 688899997 44778888888 47888876663222222 22110 0000000000 00111234799999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
..---| +.+.+++.+...+++...+++....-.
T Consensus 73 v~vKa~---q~~~al~~l~~~~~~~t~vl~lqNG~g 105 (307)
T COG1893 73 VTVKAY---QLEEALPSLAPLLGPNTVVLFLQNGLG 105 (307)
T ss_pred EEeccc---cHHHHHHHhhhcCCCCcEEEEEeCCCc
Confidence 864434 678899999999999999888765443
No 376
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=76.16 E-value=5.1 Score=34.95 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=28.1
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+.... +||=+|||. |. ....+++.|.++++.+|.+.
T Consensus 25 ~L~~~--~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDA--KVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCC--eEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 33556 999999996 55 55777888999999999763
No 377
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=76.13 E-value=30 Score=29.67 Aligned_cols=99 Identities=20% Similarity=0.136 Sum_probs=49.8
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCC-ccc-ccC-CCC
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQ-DQI-NAL-KPP 139 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~-~~~-~~~-~~~ 139 (232)
++. +||=.|+|. |.....+|+. |++++++++.++.-....+ ..+.. ..+.....+.... ... ... ...
T Consensus 177 ~g~--~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~---~~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGD--TVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR---EFGAD--ATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH---HcCCC--eEEcCcccccHHHHHHHHHHhCCCC
Confidence 666 788888764 5555555555 6657899987663111111 11110 0010100000000 000 001 235
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+|+-+- .. ...+....+.++++|+++...
T Consensus 250 ~d~vid~~--g~----~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEAS--GH----PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECC--CC----hHHHHHHHHHhccCCEEEEEc
Confidence 89998531 11 235667778999999998754
No 378
>PRK07109 short chain dehydrogenase; Provisional
Probab=76.01 E-value=44 Score=28.64 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=47.2
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
..++ +||=.|++.|+ ++..+++.|+ +|+.++.++ .+......+...+ .++.+...|+.+......
T Consensus 6 l~~k--~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 6 IGRQ--VVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CCCC--EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHH
Confidence 3556 78888876554 2244455688 899999876 3444444433222 345677778776553211
Q ss_pred ---CCCCccEEEEcccC
Q 026858 136 ---LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~~ 149 (232)
..++.|++|.+...
T Consensus 79 ~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 79 AEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHCCCCCEEEECCCc
Confidence 12578999976554
No 379
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=75.98 E-value=16 Score=31.53 Aligned_cols=97 Identities=13% Similarity=0.009 Sum_probs=52.3
Q ss_pred cCCCCCcEEEeCc-c-ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEe-ecCCCcccccCCC
Q 026858 64 FHSTRRRAIELGA-G-CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVL-YWNNQDQINALKP 138 (232)
Q Consensus 64 ~~~~~~~VLElGc-G-tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~ 138 (232)
.++. +||=.|+ | .|..++.+|+. |+ ++++++.++. ...++. ..+.. ..+....- ++.... .....+
T Consensus 157 ~~g~--~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~---~lGa~--~vi~~~~~~~~~~~i-~~~~~~ 227 (348)
T PLN03154 157 KKGD--SVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKN---KLGFD--EAFNYKEEPDLDAAL-KRYFPE 227 (348)
T ss_pred CCCC--EEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH---hcCCC--EEEECCCcccHHHHH-HHHCCC
Confidence 3667 8998988 4 37777777766 77 7999887762 222221 11211 00111000 110000 000123
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+|+|+-+ .. ...+....++++++|++++..
T Consensus 228 gvD~v~d~--vG-----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDN--VG-----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEEC--CC-----HHHHHHHHHHhccCCEEEEEC
Confidence 58988843 22 235677888999999988753
No 380
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=75.56 E-value=38 Score=28.51 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=51.0
Q ss_pred cCCCCCcEEEeCc-c-ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEe-ecCCCcccccCCC
Q 026858 64 FHSTRRRAIELGA-G-CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVL-YWNNQDQINALKP 138 (232)
Q Consensus 64 ~~~~~~~VLElGc-G-tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~ 138 (232)
.++. +||=.|+ | .|...+.+|+. |+ ++++++.++. ...+ +..+.. .-+....- ++..... ....+
T Consensus 137 ~~g~--~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~----~~lGa~--~vi~~~~~~~~~~~~~-~~~~~ 206 (325)
T TIGR02825 137 KGGE--TVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYL----KKLGFD--VAFNYKTVKSLEETLK-KASPD 206 (325)
T ss_pred CCCC--EEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH----HHcCCC--EEEeccccccHHHHHH-HhCCC
Confidence 3667 8888884 3 37677777766 77 8888887762 2222 112211 00111100 1100000 00123
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+|+|+-+ .. ...+....++++++|+++...
T Consensus 207 gvdvv~d~--~G-----~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 207 GYDCYFDN--VG-----GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CeEEEEEC--CC-----HHHHHHHHHHhCcCcEEEEec
Confidence 58988842 22 124577888999999998754
No 381
>PRK08267 short chain dehydrogenase; Provisional
Probab=75.54 E-value=39 Score=27.32 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=42.5
Q ss_pred cEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--------CC
Q 026858 70 RAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--------LK 137 (232)
Q Consensus 70 ~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--------~~ 137 (232)
++|=.|++.|+ ++..+++.|+ +|+.++.++. +........ ..++.+...|+.+...... ..
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG------AGNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 57777776543 2344455587 8999987762 333322221 1345777888876543211 13
Q ss_pred CCccEEEEcccC
Q 026858 138 PPFDLVIAADVV 149 (232)
Q Consensus 138 ~~fD~Ii~~~~~ 149 (232)
++.|.|+.+...
T Consensus 76 ~~id~vi~~ag~ 87 (260)
T PRK08267 76 GRLDVLFNNAGI 87 (260)
T ss_pred CCCCEEEECCCC
Confidence 578999976654
No 382
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.36 E-value=20 Score=30.43 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=69.9
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCC-cc----cccCCC-CccE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQ-DQ----INALKP-PFDL 142 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~-~~----~~~~~~-~fD~ 142 (232)
.|+-||||-=.=...+-.. +. ++.=+|..++++.-.+.+...+...+.+..+...|+... .. ..+.+. .--+
T Consensus 95 qvViLgaGLDTRayRl~~~~~~-~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~ 173 (297)
T COG3315 95 QVVILGAGLDTRAYRLDWPKGT-RVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTL 173 (297)
T ss_pred EEEEeccccccceeecCCCCCC-eEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCeE
Confidence 8999999863222111111 23 777888878777777777766655566778888887733 21 112222 3445
Q ss_pred EEEcccC-C-CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 143 VIAADVV-Y-IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 143 Ii~~~~~-~-~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+++-..+ | ..+....++..|..+..||..+++.+.
T Consensus 174 ~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 174 WIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 5554444 3 567889999999999999999888764
No 383
>PRK08223 hypothetical protein; Validated
Probab=75.35 E-value=15 Score=31.09 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=29.0
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+.... +||=+|||- |. ....+|+.|.++++.+|.+.
T Consensus 24 kL~~s--~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 24 RLRNS--RVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHhcC--CEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34566 999999995 66 56788888999999999764
No 384
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=74.58 E-value=32 Score=30.30 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=52.7
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc----ccc-
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ----INA- 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~----~~~- 135 (232)
.+++ +||=.|+|+ |...+.+|+. |+..++.+|.++. ...+++ .+ . . .++...... ...
T Consensus 184 ~~g~--~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~G--a----~--~v~~~~~~~~~~~v~~~ 249 (393)
T TIGR02819 184 GPGS--TVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FG--C----E--TVDLSKDATLPEQIEQI 249 (393)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cC--C----e--EEecCCcccHHHHHHHH
Confidence 3566 676688876 6666666665 7755666777652 222211 11 1 1 111111100 000
Q ss_pred C-CCCccEEEEcccCCC--------cccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 136 L-KPPFDLVIAADVVYI--------EESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 136 ~-~~~fD~Ii~~~~~~~--------~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
. ...+|+|+-.-.... .......+....+++++||++++...
T Consensus 250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 1 135899985322110 01113467888889999999998654
No 385
>PRK07411 hypothetical protein; Validated
Probab=74.49 E-value=10 Score=33.51 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=28.6
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+.... +||=+|||. |. .+..+++.|.++++.+|.+.
T Consensus 35 ~L~~~--~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 35 RLKAA--SVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HHhcC--cEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 33556 999999996 55 66777888999999999863
No 386
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=74.41 E-value=31 Score=29.09 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=41.6
Q ss_pred CCCCCcEEEeCccccHH-H--HHHHHhCCCcEEEEcchh----HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC
Q 026858 65 HSTRRRAIELGAGCGAA-G--MAFYLLGLADIVLTDISP----VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~-s--~~la~~~~~~v~~~D~s~----~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 137 (232)
.++ ++|=+|+| |.. + ..++..|+.+++.++.+. ..+.....+.... ..+.....++.+.......-
T Consensus 125 ~~k--~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~----~~~~~~~~d~~~~~~~~~~~ 197 (289)
T PRK12548 125 KGK--KLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV----PECIVNVYDLNDTEKLKAEI 197 (289)
T ss_pred CCC--EEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC----CCceeEEechhhhhHHHhhh
Confidence 556 89999997 542 2 233455886799998874 1222222222111 11233344554332211112
Q ss_pred CCccEEEEcccCC
Q 026858 138 PPFDLVIAADVVY 150 (232)
Q Consensus 138 ~~fD~Ii~~~~~~ 150 (232)
..+|+||.+-++.
T Consensus 198 ~~~DilINaTp~G 210 (289)
T PRK12548 198 ASSDILVNATLVG 210 (289)
T ss_pred ccCCEEEEeCCCC
Confidence 3579999877764
No 387
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=74.18 E-value=36 Score=27.23 Aligned_cols=98 Identities=15% Similarity=0.215 Sum_probs=59.4
Q ss_pred cEEEeCccccHHHHHHHHh----C--CCcEEEEcchhH-H-HHHHHHHHhcCCCCCCceEEEEeecCCCccccc---CCC
Q 026858 70 RAIELGAGCGAAGMAFYLL----G--LADIVLTDISPV-M-PALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---LKP 138 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~----~--~~~v~~~D~s~~-~-~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---~~~ 138 (232)
.|+|+|.-.|-..+..|.. | . +|+++|++-. . ..+.+ .+.|.+...+-.+.....+ ...
T Consensus 72 lvIE~Gs~~GGSal~fA~~m~s~Gq~~-kvl~vdIdi~~~~p~a~e---------~p~i~f~egss~dpai~eqi~~~~~ 141 (237)
T COG3510 72 LVIEFGSRHGGSALFFANMMISIGQPF-KVLGVDIDIKPLDPAARE---------VPDILFIEGSSTDPAIAEQIRRLKN 141 (237)
T ss_pred eeEeeccccCchhhhhhHhHHhcCCCc-eEEEEecccCcCChhhhc---------CCCeEEEeCCCCCHHHHHHHHHHhc
Confidence 7999999998877776643 4 5 9999999851 1 11111 2345666665444432111 112
Q ss_pred Cc-cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 139 PF-DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 139 ~f-D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
.| -+.++-+.-|+.+..-.-++.+..+|..|-++++-+.
T Consensus 142 ~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 142 EYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred CCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 22 3444445555555566666777888899998888643
No 388
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=73.89 E-value=32 Score=30.57 Aligned_cols=114 Identities=16% Similarity=0.183 Sum_probs=57.6
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcC---CCC----CCceEEEEeecCCCcccccCCCC
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNK---PVL----NKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~---~~~----~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
+|-=+|-|- |+ ++..+|+.|+ +|+|+|+++. +....+ -.+. +.. ..-+....+...... . ....
T Consensus 11 ~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~--G~~~i~e~~~~~~v~~~v~~g~lraTtd~--~-~l~~ 84 (436)
T COG0677 11 TIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNR--GESYIEEPDLDEVVKEAVESGKLRATTDP--E-ELKE 84 (436)
T ss_pred EEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhC--CcceeecCcHHHHHHHHHhcCCceEecCh--h-hccc
Confidence 777777776 77 5566678898 9999999972 222111 0000 000 000000011111100 0 1124
Q ss_pred ccEEEEcccCC----Cc---ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHH
Q 026858 140 FDLVIAADVVY----IE---ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEM 190 (232)
Q Consensus 140 fD~Ii~~~~~~----~~---~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~ 190 (232)
.|+++.+=+.. .. +-+.++.+.+.+.|++|-.++ ....-.|.+.+.+...
T Consensus 85 ~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVI-lEST~~PGTTe~v~~p 141 (436)
T COG0677 85 CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVI-LESTTPPGTTEEVVKP 141 (436)
T ss_pred CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEE-EecCCCCCcHHHHHHH
Confidence 67776543332 22 246777788888998865555 4444445555555443
No 389
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.81 E-value=46 Score=26.90 Aligned_cols=79 Identities=19% Similarity=0.292 Sum_probs=46.6
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|++++.++. ......... ...++.+...|..+......
T Consensus 5 ~l~~k--~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~-~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 5 DLNGK--VAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA-PETQAQVEA----LGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred ccCCC--EEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH-HHHHHHHHH----cCCeEEEEEeCCCCHHHHHHHHHH
Confidence 34667 89999987765 3344556688 8988876542 122222221 12345677788777653211
Q ss_pred ---CCCCccEEEEcccC
Q 026858 136 ---LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~~ 149 (232)
..++.|+++.+...
T Consensus 77 ~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 77 AVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 13568999976654
No 390
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=73.78 E-value=12 Score=32.22 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=57.9
Q ss_pred cEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
.|.=||.|. |..+-.+|.. |+ .|+..|.|.. +..... . ...++....- +.......-.+.|+||..
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd----~---f~~rv~~~~s---t~~~iee~v~~aDlvIga 238 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDD----L---FGGRVHTLYS---TPSNIEEAVKKADLVIGA 238 (371)
T ss_pred cEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhH----h---hCceeEEEEc---CHHHHHHHhhhccEEEEE
Confidence 788898887 6655544443 77 9999999872 222221 1 2223333222 112222233578999975
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
=.+-......-..+++.+.|+||+.++=+.
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 444455566666788899999998877543
No 391
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=73.63 E-value=31 Score=29.71 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=48.7
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +||=.|+|. |...+.+|+. |+ +++.++.++. .....+ ..+.. .. .+.............+|
T Consensus 180 ~g~--~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~---~~Ga~-----~~--i~~~~~~~~~~~~~~~D 246 (357)
T PLN02514 180 SGL--RGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALE---HLGAD-----DY--LVSSDAAEMQEAADSLD 246 (357)
T ss_pred CCC--eEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH---hcCCc-----EE--ecCCChHHHHHhcCCCc
Confidence 566 788788766 6666666665 77 6777776552 111111 11111 00 01111010111123588
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+-+ ... ...+....+.++++|+++...
T Consensus 247 ~vid~--~g~----~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 247 YIIDT--VPV----FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred EEEEC--CCc----hHHHHHHHHHhccCCEEEEEC
Confidence 88843 221 235666778899999988764
No 392
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=73.62 E-value=14 Score=31.67 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=50.1
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC-CCc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK-PPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~f 140 (232)
++. +||=.|+|. |..++.+|+. |+.++++++.++. ...+.. .+.. ..+.....++.... ..... +.+
T Consensus 172 ~g~--~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~--~~i~~~~~~~~~~l-~~~~~~~~~ 242 (351)
T cd08233 172 PGD--TALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT--IVLDPTEVDVVAEV-RKLTGGGGV 242 (351)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC--EEECCCccCHHHHH-HHHhCCCCC
Confidence 566 788788654 4455555554 6657888887763 222211 1111 00000011110000 00112 249
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+|+-+.. -...+....+.++++|+++....
T Consensus 243 d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAG------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCC------CHHHHHHHHHhccCCCEEEEEcc
Confidence 99996421 12356777888999999887643
No 393
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=73.61 E-value=16 Score=31.73 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=51.5
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCC--ccc-ccCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQ--DQI-NALK 137 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~--~~~-~~~~ 137 (232)
.++. +||=.|||. |..++.+|+. |+.+|+++|.++. ...+ +..+.. . .+...+.... ... ....
T Consensus 184 ~~g~--~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a----~~~Ga~--~--~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 184 EEGD--TVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELA----KKLGAT--D--CVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHhCCC--e--EEcccccchhHHHHHHHHhC
Confidence 3567 888889876 6676767765 7657999998873 2222 111211 0 1110000000 000 0011
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
+.+|+|+-+- .. ...+....+.++++ |++++..
T Consensus 254 ~g~d~vid~~--G~----~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 254 GGVDYSFECI--GN----VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCCEEEECC--CC----HHHHHHHHHHhhcCCCeEEEEe
Confidence 3589888532 11 33566667788775 9887765
No 394
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=73.21 E-value=25 Score=30.01 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +||=.|+|. |.....+|+. |+.++++++.++. ...+ . ..+.. .-+.....++.... .....+.+|
T Consensus 175 ~~~--~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~---~~g~~--~~~~~~~~~~~~~~-~~~~~~~~d 245 (350)
T cd08240 175 ADE--PVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAA-K---AAGAD--VVVNGSDPDAAKRI-IKAAGGGVD 245 (350)
T ss_pred CCC--EEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-H---HhCCc--EEecCCCccHHHHH-HHHhCCCCc
Confidence 556 788888765 5555555655 7767888887652 2222 1 11110 00000000000000 001112589
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+++-+.. ....+....+.|+++|+++..
T Consensus 246 ~vid~~g------~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 246 AVIDFVN------NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEEECCC------CHHHHHHHHHHhhcCCeEEEE
Confidence 9985321 134577788899999998864
No 395
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.15 E-value=58 Score=27.73 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=54.5
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
+..++ .||==|.|.|+ +++.+|+.|+ +++..|+++ ......+.+..++ ++..-.-|+.+.++..
T Consensus 35 ~v~g~--~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-----~~~~y~cdis~~eei~~~a~ 106 (300)
T KOG1201|consen 35 SVSGE--IVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-----EAKAYTCDISDREEIYRLAK 106 (300)
T ss_pred hccCC--EEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-----ceeEEEecCCCHHHHHHHHH
Confidence 56788 89999999987 6677788898 999999997 3555555444432 3456666766655321
Q ss_pred ---cCCCCccEEEEcccC
Q 026858 135 ---ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~ 149 (232)
..-+..|++|-+..+
T Consensus 107 ~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 107 KVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHhcCCceEEEecccc
Confidence 124578999976655
No 396
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=72.50 E-value=4.7 Score=34.56 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=43.6
Q ss_pred EEeCccccHHHHHH---HHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeec---CCCcccccC-CCCccE
Q 026858 72 IELGAGCGAAGMAF---YLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYW---NNQDQINAL-KPPFDL 142 (232)
Q Consensus 72 LElGcGtG~~s~~l---a~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~---~~~~~~~~~-~~~fD~ 142 (232)
+|||.|+. ++.. +++ +. ..+++|++++ ...+..|...|+ +...+......- .-.+..... ..-||.
T Consensus 107 iDIgtgas--ci~~llg~rq~n~-~f~~teidd~s~~~a~snV~qn~--lss~ikvV~~~~~ktll~d~~~~~~e~~ydF 181 (419)
T KOG2912|consen 107 IDIGTGAS--CIYPLLGARQNNW-YFLATEIDDMSFNYAKSNVEQNN--LSSLIKVVKVEPQKTLLMDALKEESEIIYDF 181 (419)
T ss_pred eeccCchh--hhHHhhhchhccc-eeeeeeccccccchhhccccccc--cccceeeEEecchhhcchhhhccCccceeeE
Confidence 68866654 3333 333 54 8999999985 677778887776 333333333321 111111111 234999
Q ss_pred EEEcccCCCc
Q 026858 143 VIAADVVYIE 152 (232)
Q Consensus 143 Ii~~~~~~~~ 152 (232)
..|++++|..
T Consensus 182 cMcNPPFfe~ 191 (419)
T KOG2912|consen 182 CMCNPPFFEN 191 (419)
T ss_pred EecCCchhhc
Confidence 9999988743
No 397
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=72.41 E-value=8.9 Score=32.42 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=26.6
Q ss_pred cCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
.... +||=+|||. |. .+..++..|.++++.+|.+.
T Consensus 17 L~~s--~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 17 LQKS--NVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HhcC--cEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 3456 899999985 55 55666777988999999763
No 398
>PRK05867 short chain dehydrogenase; Provisional
Probab=72.27 E-value=27 Score=28.15 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=48.0
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|++++.++. .+.....+... ..++.....|+.+......
T Consensus 6 ~~~~k--~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 6 DLHGK--RALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTS----GGKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred cCCCC--EEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHH
Confidence 34667 89999987654 3345556688 8999998762 33333333222 1335666777766543211
Q ss_pred ----CCCCccEEEEcccC
Q 026858 136 ----LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~ 149 (232)
..++.|+++.+...
T Consensus 79 ~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 79 QVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 12578999976554
No 399
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=72.15 E-value=20 Score=29.30 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=23.2
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+||=+|||. |. +...+++.|.++++.+|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 477788884 55 44566777999999999863
No 400
>PRK08339 short chain dehydrogenase; Provisional
Probab=71.83 E-value=54 Score=26.79 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=48.0
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
..++ ++|=.|++.|+ ++..+++.|+ +|+.+|.++. +......+.... ..++.+...|..+......
T Consensus 6 l~~k--~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~ 79 (263)
T PRK08339 6 LSGK--LAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES---NVDVSYIVADLTKREDLERTVKE 79 (263)
T ss_pred CCCC--EEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCCHHHHHHHHHH
Confidence 4567 88888887665 3345556688 8999998763 333333332211 2345677788877643211
Q ss_pred --CCCCccEEEEcccC
Q 026858 136 --LKPPFDLVIAADVV 149 (232)
Q Consensus 136 --~~~~fD~Ii~~~~~ 149 (232)
..+..|+++.+...
T Consensus 80 ~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 80 LKNIGEPDIFFFSTGG 95 (263)
T ss_pred HHhhCCCcEEEECCCC
Confidence 12568998876543
No 401
>PRK07877 hypothetical protein; Provisional
Probab=71.64 E-value=17 Score=34.87 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=27.9
Q ss_pred cCCCCCcEEEeCccccH-HHHHHHHhCC-CcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGCGA-AGMAFYLLGL-ADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~-~s~~la~~~~-~~v~~~D~s~ 100 (232)
.... +|+=+|||-|. .+..+++.|. ++++.+|.+.
T Consensus 105 L~~~--~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 105 LGRL--RIGVVGLSVGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred HhcC--CEEEEEecHHHHHHHHHHHccCCCeEEEEcCCE
Confidence 3556 99999999877 5577788884 8999999874
No 402
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=71.58 E-value=74 Score=28.34 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=55.2
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCC-CCc--------eEEEEeecCCCcccccCC
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVL-NKS--------LKTSVLYWNNQDQINALK 137 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~-~~~--------i~~~~~d~~~~~~~~~~~ 137 (232)
+|-=||.|. |. ++..+++.|. +|++.|.++. +.... ...... ... +....+.... ..
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~----~g~~~~~e~~l~~~l~~~~~~g~l~~~~------~~ 73 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTIN----RGEIHIVEPDLDMVVKTAVEGGYLRATT------TP 73 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHH----CCCCCcCCCCHHHHHHHHhhcCceeeec------cc
Confidence 677777775 44 4455666687 9999999883 33211 111000 000 0000000000 01
Q ss_pred CCccEEEEcccCC-------CcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHH
Q 026858 138 PPFDLVIAADVVY-------IEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMC 191 (232)
Q Consensus 138 ~~fD~Ii~~~~~~-------~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~ 191 (232)
...|+|+.+-+.- ....+...++.+.+.+++|.. ++....-.+.+.+.+...+
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~i-VI~~STv~pgtt~~~~~~l 133 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDL-VILESTSPVGATEQMAEWL 133 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCE-EEEeCCCCCCHHHHHHHHH
Confidence 2468888765442 113556666777888877555 4444444445555554433
No 403
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=71.39 E-value=5.4 Score=32.30 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=59.6
Q ss_pred CCCCcEEEeCccccHHHHHHH--Hh-CCCcEEEEcchh-HHHHHHHHHHhcCCC-C------------------------
Q 026858 66 STRRRAIELGAGCGAAGMAFY--LL-GLADIVLTDISP-VMPALKHNLKRNKPV-L------------------------ 116 (232)
Q Consensus 66 ~~~~~VLElGcGtG~~s~~la--~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~-~------------------------ 116 (232)
..+.++-|=.||+|.+.-.+. +. ....+++.|+++ +++.+++|+....+. +
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 346799999999998543332 22 345899999998 588888887421100 0
Q ss_pred -----------C-C--ceEEEEeecCCCccccc--CCCCccEEEEcccCC-----Ccc-----cHHHHHHHHHHhhCCCc
Q 026858 117 -----------N-K--SLKTSVLYWNNQDQINA--LKPPFDLVIAADVVY-----IEE-----SAAQLVRAMEALVADDG 170 (232)
Q Consensus 117 -----------~-~--~i~~~~~d~~~~~~~~~--~~~~fD~Ii~~~~~~-----~~~-----~~~~~l~~l~~~l~pgG 170 (232)
. . .......|+.+...... .....|+|+. |..| |.. ....++..++.+|.+++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViT-DlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVIT-DLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEE-E--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEe-cCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 0 0 12333444433222111 1123699996 4443 222 47789999999996667
Q ss_pred EEEEEEeecC
Q 026858 171 VVLLGYQLRS 180 (232)
Q Consensus 171 ~l~i~~~~r~ 180 (232)
++.++++.|.
T Consensus 209 VV~v~~k~~K 218 (246)
T PF11599_consen 209 VVAVSDKGRK 218 (246)
T ss_dssp EEEEEESSSS
T ss_pred EEEEecCCcc
Confidence 7777655554
No 404
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=71.38 E-value=36 Score=28.75 Aligned_cols=98 Identities=17% Similarity=0.102 Sum_probs=50.4
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.++. +||-.|+|. |...+.+|+. |+ +++++..++. .... + .... . ..+.....++............+
T Consensus 158 ~~g~--~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~-~--~~g~-~--~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 158 TAGD--TVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFA-R--ELGA-D--DTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHH-H--HhCC-C--EEecCcccCHHHHHHHHhCCCCC
Confidence 4667 899998764 5555666665 77 7888866652 2222 1 1111 0 00111111100000000012358
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+++.+- .. ...+..+.+.|+++|+++...
T Consensus 229 d~vld~~--g~----~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 229 DVVIDAT--GN----PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CEEEECC--CC----HHHHHHHHHHHhcCCEEEEEc
Confidence 9998642 11 345677888999999988653
No 405
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=71.33 E-value=10 Score=29.61 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=50.6
Q ss_pred EEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcC------CCC--------CCceEEEEeecCCCccc
Q 026858 71 AIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNK------PVL--------NKSLKTSVLYWNNQDQI 133 (232)
Q Consensus 71 VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~------~~~--------~~~i~~~~~d~~~~~~~ 133 (232)
|-=||+|+ |. ++..++..|. +|+..|.++. +....+.+..+. ..+ ..++.+. .. .
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-----~d--l 73 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-----TD--L 73 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-----SS--G
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-----cC--H
Confidence 45578887 54 5566677788 9999999973 444444333211 011 1112211 11 1
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.... ..|+|+-+- ....+.-..+++.+.+++.|+..|.-..
T Consensus 74 ~~~~-~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 74 EEAV-DADLVIEAI-PEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp GGGC-TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred HHHh-hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 1122 678888542 2344445678888888888887766544
No 406
>PRK08324 short chain dehydrogenase; Validated
Probab=71.30 E-value=36 Score=32.40 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=56.9
Q ss_pred CCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-----
Q 026858 65 HSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA----- 135 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~----- 135 (232)
.++ .||=.|++.|+ +...++..|+ +|+++|.++. .......+... ..+.....|+.+......
T Consensus 421 ~gk--~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~-----~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 421 AGK--VALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP-----DRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCC--EEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc-----CcEEEEEecCCCHHHHHHHHHHH
Confidence 456 88888864432 2233344587 8999998873 33322222111 245677777766542111
Q ss_pred --CCCCccEEEEcccCCCccc-------------------HHHHHHHHHHhhCC---CcEEEEEE
Q 026858 136 --LKPPFDLVIAADVVYIEES-------------------AAQLVRAMEALVAD---DGVVLLGY 176 (232)
Q Consensus 136 --~~~~fD~Ii~~~~~~~~~~-------------------~~~~l~~l~~~l~p---gG~l~i~~ 176 (232)
..+.+|+||.+........ ...+++.+.+.++. +|.+++..
T Consensus 493 ~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 493 ALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 1246899998665432211 23345555666654 57777653
No 407
>PRK05854 short chain dehydrogenase; Provisional
Probab=71.18 E-value=38 Score=28.63 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=48.8
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|++++-+.. .......+.... -...+.+...|+.+.....
T Consensus 11 ~l~gk--~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dl~d~~sv~~~~~ 85 (313)
T PRK05854 11 DLSGK--RAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAV--PDAKLSLRALDLSSLASVAALGE 85 (313)
T ss_pred ccCCC--EEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEecCCCHHHHHHHHH
Confidence 45677 88888887665 3344555687 8999887752 333333332221 1124677888887654321
Q ss_pred ---cCCCCccEEEEcccC
Q 026858 135 ---ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~ 149 (232)
...++.|++|.+...
T Consensus 86 ~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 86 QLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHhCCCccEEEECCcc
Confidence 123568999976554
No 408
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=70.59 E-value=21 Score=29.97 Aligned_cols=96 Identities=15% Similarity=0.026 Sum_probs=50.3
Q ss_pred cCCCCCcEEEeCc-c-ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 64 FHSTRRRAIELGA-G-CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGc-G-tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
.++. +||=.|+ | .|...+.+|+. |+ ++++++.++. ...++ ..+.. .-+.....++.... .....+.
T Consensus 142 ~~g~--~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~----~~Ga~--~vi~~~~~~~~~~v-~~~~~~g 211 (329)
T cd08294 142 KAGE--TVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLK----ELGFD--AVFNYKTVSLEEAL-KEAAPDG 211 (329)
T ss_pred CCCC--EEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----HcCCC--EEEeCCCccHHHHH-HHHCCCC
Confidence 3566 8887874 2 36666666665 77 7888887662 22222 12211 00111111110000 0011235
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+|+-+ .. ...+....++++++|+++...
T Consensus 212 vd~vld~--~g-----~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 212 IDCYFDN--VG-----GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred cEEEEEC--CC-----HHHHHHHHHhhccCCEEEEEc
Confidence 8988842 22 245677888999999988653
No 409
>PRK14852 hypothetical protein; Provisional
Probab=70.50 E-value=8.1 Score=38.20 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=28.6
Q ss_pred cCCCCCcEEEeCcc-ccH-HHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAG-CGA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcG-tG~-~s~~la~~~~~~v~~~D~s~ 100 (232)
.... +|+=+||| .|. .+..+++.|.++++.+|.+.
T Consensus 330 L~~s--rVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 330 LLRS--RVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred HhcC--cEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 3556 99999999 566 66888898999999999763
No 410
>PRK09242 tropinone reductase; Provisional
Probab=70.41 E-value=55 Score=26.36 Aligned_cols=81 Identities=12% Similarity=0.191 Sum_probs=47.2
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc------
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI------ 133 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~------ 133 (232)
..++ ++|=.|++.|+ ++..+++.|+ +|++++.+.. ......+.....+ ..++.+...|+.+....
T Consensus 7 ~~~k--~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 7 LDGQ--TALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFP--EREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred cCCC--EEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCC--CCeEEEEECCCCCHHHHHHHHHH
Confidence 4567 89989886554 3344455588 8999987762 4444443332211 23456667777665421
Q ss_pred -ccCCCCccEEEEcccC
Q 026858 134 -NALKPPFDLVIAADVV 149 (232)
Q Consensus 134 -~~~~~~fD~Ii~~~~~ 149 (232)
....++.|.|+.+...
T Consensus 82 ~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 82 VEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 1123578999876654
No 411
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=70.32 E-value=62 Score=27.10 Aligned_cols=109 Identities=23% Similarity=0.203 Sum_probs=49.4
Q ss_pred CcEEEeCccc--cH-HHHHHHHh----CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 69 RRAIELGAGC--GA-AGMAFYLL----GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 69 ~~VLElGcGt--G~-~s~~la~~----~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++||-+|+|+ |. +|-...++ ++ -++-.|+.+ .. .+.-.....|..... .+.+||
T Consensus 63 MrVlHlGAgSdkGvaPGt~VLrqwlP~~a-ilvDnDi~d---~v-----------SDa~~~~~~Dc~t~~----~~~k~D 123 (299)
T PF06460_consen 63 MRVLHLGAGSDKGVAPGTAVLRQWLPEDA-ILVDNDIRD---YV-----------SDADQSIVGDCRTYM----PPDKFD 123 (299)
T ss_dssp -EEEEES---TTSB-HHHHHHHHHS-TT--EEEEEESS-----B------------SSSEEEES-GGGEE----ESS-EE
T ss_pred cEEEEecccccCCcCCchHHHHHhCCCCc-EEEecchhh---hc-----------cccCCceeccccccC----CCCccc
Confidence 3999999998 54 44444443 33 444444433 00 000122333332222 246899
Q ss_pred EEEEcccCC------------CcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEe
Q 026858 142 LVIAADVVY------------IEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKV 200 (232)
Q Consensus 142 ~Ii~~~~~~------------~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~ 200 (232)
+|++ |... ...-...+..-++.-|+=||.+++-..... ...++.++++. |.....
T Consensus 124 lIiS-DmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~S--w~~~Lyel~~~-F~~wt~ 190 (299)
T PF06460_consen 124 LIIS-DMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHS--WNAQLYELMGY-FSWWTC 190 (299)
T ss_dssp EEEE-----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS----HHHHHHHTT-EEEEEE
T ss_pred EEEE-ecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeeccc--ccHHHHHHHhh-cccEEE
Confidence 9996 3320 112344555666778888999998654443 23455665543 444333
No 412
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=70.31 E-value=30 Score=31.04 Aligned_cols=90 Identities=11% Similarity=0.189 Sum_probs=52.3
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHH-HhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFY-LLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la-~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++ +|+=+|+|. |......+ ..|+ +|+.+|.++... ..+... + . ....+ .. .....|
T Consensus 210 l~Gk--~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra--~~A~~~-G--~----~v~~l-----~e---al~~aD 269 (425)
T PRK05476 210 IAGK--VVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICA--LQAAMD-G--F----RVMTM-----EE---AAELGD 269 (425)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhh--HHHHhc-C--C----EecCH-----HH---HHhCCC
Confidence 4678 999999987 55333333 3487 899999987311 111111 1 1 11111 11 123589
Q ss_pred EEEEcccCCCcccHHHHHH-HHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEESAAQLVR-AMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~-~l~~~l~pgG~l~i~~~~r 179 (232)
+|+... .. ..++. .....+++|++++.+....
T Consensus 270 VVI~aT-----G~-~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 270 IFVTAT-----GN-KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred EEEECC-----CC-HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 998753 12 33454 6778899999888876544
No 413
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=70.26 E-value=19 Score=31.07 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=50.2
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc-ccCCCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NALKPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~ 139 (232)
.++. +||=.|+|+ |..+..+|+. |+.+|+++|.++. ...+ + ..+.. .-+.....+....... ....+.
T Consensus 183 ~~g~--~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~-~---~~ga~--~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 183 EPGS--TVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKA-K---EFGAT--DFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-H---HcCCC--cEeccccccchHHHHHHHHhCCC
Confidence 4567 888888865 6666666655 7657999998763 2222 1 11111 0011110000000000 001235
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
+|+|+-+ ... ...+....+.++++ |+++...
T Consensus 255 ~d~vid~--~g~----~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 255 VDYSFEC--TGN----ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCEEEEC--CCC----hHHHHHHHHhcccCCCEEEEEc
Confidence 8999853 211 24566677788775 8887754
No 414
>PRK05876 short chain dehydrogenase; Provisional
Probab=70.24 E-value=60 Score=26.74 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=46.1
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN----- 134 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~----- 134 (232)
+.++ ++|=.|+++|+ ++..+++.|+ +|+.+|.++ .+......+... ..++.+...|+.+.....
T Consensus 4 ~~~k--~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 4 FPGR--GAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAE----GFDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred cCCC--EEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHH
Confidence 4567 88888877655 3344455688 899999876 233333333222 123566777776654321
Q ss_pred --cCCCCccEEEEcccC
Q 026858 135 --ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 --~~~~~fD~Ii~~~~~ 149 (232)
...++.|++|.+..+
T Consensus 77 ~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 77 AFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 112468999976654
No 415
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=69.88 E-value=22 Score=26.95 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=54.2
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|-=||+|. |. ++..+++.|+ .+++.|.++. ..+...... +.. . .... ..-...|+|+++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~---~~~~~~~~g------~~~--~--~s~~---e~~~~~dvvi~~- 64 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPE---KAEALAEAG------AEV--A--DSPA---EAAEQADVVILC- 64 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHH---HHHHHHHTT------EEE--E--SSHH---HHHHHBSEEEE--
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchh---hhhhhHHhh------hhh--h--hhhh---hHhhcccceEee-
Confidence 444566654 33 3344455588 8999998872 222122111 000 0 0001 011235999975
Q ss_pred cCCCcccHHHHHHH--HHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 148 VVYIEESAAQLVRA--MEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 148 ~~~~~~~~~~~l~~--l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
+.+....+.++.. +...+++ |.+++-...-.+.....+.+.+. .+..+.+.
T Consensus 65 -v~~~~~v~~v~~~~~i~~~l~~-g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 65 -VPDDDAVEAVLFGENILAGLRP-GKIIIDMSTISPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp -SSSHHHHHHHHHCTTHGGGS-T-TEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred -cccchhhhhhhhhhHHhhcccc-ceEEEecCCcchhhhhhhhhhhhhccceeeee
Confidence 3344556666666 5555555 55555555666666677777665 46655544
No 416
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=69.71 E-value=11 Score=33.25 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=35.2
Q ss_pred eeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH
Q 026858 32 SVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV 101 (232)
Q Consensus 32 ~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~ 101 (232)
..|+...+..+.|.- .++. +||-|.+| |...+.....+.++|+++|+|+.
T Consensus 19 ~~WEDp~vD~~aL~i-----------------~~~d--~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~ 68 (380)
T PF11899_consen 19 QCWEDPRVDMEALNI-----------------GPDD--RVLTITSA-GCNALDYLLAGPKRIHAVDLNPA 68 (380)
T ss_pred cccCCcHHHHHHhCC-----------------CCCC--eEEEEccC-CchHHHHHhcCCceEEEEeCCHH
Confidence 578888887776643 3567 99999665 44444444444559999999985
No 417
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=69.67 E-value=37 Score=25.20 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=47.2
Q ss_pred cEEEeCccccH---HHHHHHHhCCCcEEEEcch---hHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-------cC
Q 026858 70 RAIELGAGCGA---AGMAFYLLGLADIVLTDIS---PVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-------AL 136 (232)
Q Consensus 70 ~VLElGcGtG~---~s~~la~~~~~~v~~~D~s---~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-------~~ 136 (232)
++|=.|+++|+ ++..+++.|..+++.+..+ +........+... ..++.+...|..+.+... ..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP----GAKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT----TSEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc----ccccccccccccccccccccccccccc
Confidence 56777777654 3344555566688888887 2344443433322 245688888877664321 12
Q ss_pred CCCccEEEEcccCCC
Q 026858 137 KPPFDLVIAADVVYI 151 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~ 151 (232)
.+..|+++.+.....
T Consensus 78 ~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 78 FGPLDILINNAGIFS 92 (167)
T ss_dssp HSSESEEEEECSCTT
T ss_pred ccccccccccccccc
Confidence 357999998776654
No 418
>PRK06139 short chain dehydrogenase; Provisional
Probab=69.65 E-value=20 Score=30.81 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=48.1
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
..++ +||=.|++.|+ ++..+++.|+ +|+.++.++. ++.....+...+ .++.+...|+.+.+....
T Consensus 5 l~~k--~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g----~~~~~~~~Dv~d~~~v~~~~~~ 77 (330)
T PRK06139 5 LHGA--VVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALG----AEVLVVPTDVTDADQVKALATQ 77 (330)
T ss_pred CCCC--EEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHHH
Confidence 3556 88888886554 3344555688 8999998763 444444443322 245667778876543211
Q ss_pred ---CCCCccEEEEcccC
Q 026858 136 ---LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~~ 149 (232)
..+.+|++|.+..+
T Consensus 78 ~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 78 AASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 12578999986654
No 419
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=69.52 E-value=33 Score=29.65 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=58.4
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
.|-=||.|+ |. ++..+++.+. .|+....++. +.....+ ..|...+++..-...+.+..+ ........|+|+..
T Consensus 3 kI~ViGaGswGTALA~~la~ng~-~V~lw~r~~~~~~~i~~~-~~N~~yLp~i~lp~~l~at~D--l~~a~~~ad~iv~a 78 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGH-EVRLWGRDEEIVAEINET-RENPKYLPGILLPPNLKATTD--LAEALDGADIIVIA 78 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCC-eeEEEecCHHHHHHHHhc-CcCccccCCccCCcccccccC--HHHHHhcCCEEEEE
Confidence 677788887 66 6677777776 8888888773 3333322 233222221111111111111 11112348888875
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhH
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEA 183 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~ 183 (232)
-+.+ .+...++.+...++++-.++.+.+.-.+.+
T Consensus 79 vPs~---~~r~v~~~l~~~l~~~~~iv~~sKGie~~t 112 (329)
T COG0240 79 VPSQ---ALREVLRQLKPLLLKDAIIVSATKGLEPET 112 (329)
T ss_pred CChH---HHHHHHHHHhhhccCCCeEEEEeccccCCC
Confidence 4333 456666667667778888888776554433
No 420
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=69.28 E-value=1.9 Score=38.89 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=26.8
Q ss_pred CCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 65 HSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
.+. +||=+|||- |. +--.+|..|..+++.+|.+.
T Consensus 11 ~~~--riLvVGaGGIGCELLKnLal~gf~~IhiIDlDT 46 (603)
T KOG2013|consen 11 KSG--RILVVGAGGIGCELLKNLALTGFEEIHIIDLDT 46 (603)
T ss_pred ccC--eEEEEecCcccHHHHHHHHHhcCCeeEEEeccc
Confidence 456 899999986 66 44556777999999999875
No 421
>PRK05872 short chain dehydrogenase; Provisional
Probab=69.16 E-value=66 Score=26.80 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=45.5
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...++ +||=.|++.|+ ++..+++.|+ +|+.++.++. +......+.. ...+.....|+.+.....
T Consensus 6 ~l~gk--~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-----~~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 6 SLAGK--VVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-----DDRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCCCC--EEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-----CCcEEEEEecCCCHHHHHHHHH
Confidence 45677 89988876654 3344455588 8999998762 3333222211 123445557776654211
Q ss_pred ---cCCCCccEEEEcccC
Q 026858 135 ---ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~ 149 (232)
...++.|++|.+..+
T Consensus 78 ~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 78 EAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 112578999987665
No 422
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=69.05 E-value=66 Score=27.61 Aligned_cols=100 Identities=15% Similarity=0.045 Sum_probs=49.9
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +||=.|+|. |...+.+++. |+..+++++.++......+. .+ ....+.....++............+|
T Consensus 181 ~~g~--~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~---~g--~~~vv~~~~~~~~~~l~~~~~~~~vd 253 (363)
T cd08279 181 RPGD--TVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR---FG--ATHTVNASEDDAVEAVRDLTDGRGAD 253 (363)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH---hC--CeEEeCCCCccHHHHHHHHcCCCCCC
Confidence 3566 788888754 5555555555 77448888877631111111 11 10000000001100000000123589
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+++-+-. . ...+....+.++++|+++...
T Consensus 254 ~vld~~~--~----~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 254 YAFEAVG--R----AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EEEEcCC--C----hHHHHHHHHHhhcCCeEEEEe
Confidence 8885321 1 245677888899999988764
No 423
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=68.99 E-value=29 Score=30.26 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=50.2
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEe---ecCCCcccccC-CC
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVL---YWNNQDQINAL-KP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~---d~~~~~~~~~~-~~ 138 (232)
++. +||=.|+|. |...+.+|+. |+.++++++.++.-....+ ..+ ....+..... ++.... .... ..
T Consensus 203 ~g~--~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~---~~g--~~~~v~~~~~~~~~~~~~v-~~~~~g~ 274 (384)
T cd08265 203 PGA--YVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAK---EMG--ADYVFNPTKMRDCLSGEKV-MEVTKGW 274 (384)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH---HcC--CCEEEcccccccccHHHHH-HHhcCCC
Confidence 556 677778765 5555555555 7657999987763111111 111 1010111110 110000 0011 13
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+|+|+.+ .. .....+....+.|+++|+++...
T Consensus 275 gvDvvld~--~g---~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQVEA--AG---APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEEEC--CC---CcHHHHHHHHHHHHcCCEEEEEC
Confidence 59999854 22 11345677788889999988753
No 424
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=68.81 E-value=11 Score=27.51 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=35.7
Q ss_pred CCCccEEEEcccCCCccc----HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHH-hcCceEEEecC
Q 026858 137 KPPFDLVIAADVVYIEES----AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMC-AEVFLIEKVPH 202 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~----~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~-~~~f~~~~~~~ 202 (232)
...+|.|+. |.+....+ -..+++.+++++++||++.-... ...+...+ ..||.+++.+.
T Consensus 48 ~~~~Da~yl-DgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~------a~~Vr~~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 48 DARFDAWYL-DGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS------AGAVRRALQQAGFEVEKVPG 111 (124)
T ss_dssp -T-EEEEEE--SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------BHHHHHHHHHCTEEEEEEE-
T ss_pred cccCCEEEe-cCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec------hHHHHHHHHHcCCEEEEcCC
Confidence 467999997 33332221 25689999999999987664321 12344444 46999998864
No 425
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=68.75 E-value=43 Score=28.15 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=50.3
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---cccCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---INALK 137 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~ 137 (232)
.++. +||-+|+|. |...+.+|+. |+..+++++.++. ...+ .... . . ..++...... .....
T Consensus 158 ~~g~--~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~----~~~g--~----~-~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 158 KPGD--SVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELA----KKLG--A----T-ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH----HHhC--C----e-EEecCCCCCHHHHHHhcC
Confidence 3667 888888653 5555555554 6634888887763 2222 1111 1 0 0111111100 00012
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+|+++.+-. -...+....++++++|+++...
T Consensus 225 ~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 45999996421 1346777788999999988754
No 426
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=68.45 E-value=17 Score=31.41 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=51.3
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCc---cc-ccCCC
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQD---QI-NALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~~~ 138 (232)
++. +||=.|+|. |...+.+|+. |+..++++|.++.-....+ ..+.. .+ ++..... .. .....
T Consensus 186 ~g~--~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~---~~g~~-----~~--i~~~~~~~~~~v~~~~~~ 253 (365)
T cd08278 186 PGS--SIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK---ELGAT-----HV--INPKEEDLVAAIREITGG 253 (365)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH---HcCCc-----EE--ecCCCcCHHHHHHHHhCC
Confidence 566 788888765 6666666665 7756999998763111111 11110 01 1111100 00 00123
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+|+|+-+- .. ...+....+.++++|+++...
T Consensus 254 ~~d~vld~~--g~----~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 254 GVDYALDTT--GV----PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCcEEEECC--CC----cHHHHHHHHHhccCCEEEEeC
Confidence 589998532 11 235677888899999988764
No 427
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=68.34 E-value=45 Score=28.51 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=51.3
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCC---CC-ceEE--EEeecCCCcccccCCCCcc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVL---NK-SLKT--SVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~---~~-~i~~--~~~d~~~~~~~~~~~~~fD 141 (232)
+|.=||+|. |. ++..+++.|. +|+++|.++..... ..++... .. .... ..+...... .....+|
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~D 75 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGA-DVTLIGRARIGDEL----RAHGLTLTDYRGRDVRVPPSAIAFSTDP---AALATAD 75 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCC-cEEEEecHHHHHHH----HhcCceeecCCCcceecccceeEeccCh---hhccCCC
Confidence 677788886 43 5666667787 89999987532221 1111110 00 0000 001111111 1124689
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+.+-..+ ....+++.+...++++..++...
T Consensus 76 ~vil~vk~~---~~~~~~~~l~~~~~~~~iii~~~ 107 (341)
T PRK08229 76 LVLVTVKSA---ATADAAAALAGHARPGAVVVSFQ 107 (341)
T ss_pred EEEEEecCc---chHHHHHHHHhhCCCCCEEEEeC
Confidence 999865433 34667788888887776555443
No 428
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=68.32 E-value=12 Score=32.01 Aligned_cols=111 Identities=16% Similarity=0.209 Sum_probs=60.8
Q ss_pred CcEEEeCccccH--HHHHHHH----h-C-----C---------CcEEEEcchh---HHHHHHHHHHhc-----------C
Q 026858 69 RRAIELGAGCGA--AGMAFYL----L-G-----L---------ADIVLTDISP---VMPALKHNLKRN-----------K 113 (232)
Q Consensus 69 ~~VLElGcGtG~--~s~~la~----~-~-----~---------~~v~~~D~s~---~~~~~~~n~~~~-----------~ 113 (232)
.+||.||.|.|. +++..+. . . . -.++++|+.+ ++......+... .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 399999999976 3332222 0 0 1 2899999876 355555555443 1
Q ss_pred CCC---CCceEEEEeecCCCcccc--cC-C-CCccEEEEcccC---C--CcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 114 PVL---NKSLKTSVLYWNNQDQIN--AL-K-PPFDLVIAADVV---Y--IEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 114 ~~~---~~~i~~~~~d~~~~~~~~--~~-~-~~fD~Ii~~~~~---~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
... .-.+.|.+.|+-...... .. . ...|+|..-..+ | ....--.++..+...++||..++|++..-
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 000 113455555554433210 01 1 124555443322 2 23445667778888889999999986433
No 429
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.26 E-value=52 Score=27.91 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=49.8
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeec---CC-CcccccC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYW---NN-QDQINAL 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~---~~-~~~~~~~ 136 (232)
.++. +||=.|+|. |...+.+|+. |+..++.++.++. .... ... +.. ..+.....++ .+ .... ..
T Consensus 161 ~~g~--~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~-~~~---g~~--~vi~~~~~~~~~~~~~~~~~-~~ 231 (343)
T cd05285 161 RPGD--TVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFA-KEL---GAT--HTVNVRTEDTPESAEKIAEL-LG 231 (343)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHc---CCc--EEeccccccchhHHHHHHHH-hC
Confidence 4566 777778765 5565666665 7633888876652 2222 111 110 0001111110 00 0000 01
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+|+|+-+.. . ...+....+.++++|+++...
T Consensus 232 ~~~~d~vld~~g--~----~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 232 GKGPDVVIECTG--A----ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCEEEECCC--C----HHHHHHHHHHhhcCCEEEEEc
Confidence 235999986421 1 236677888999999988654
No 430
>PRK07806 short chain dehydrogenase; Provisional
Probab=68.07 E-value=60 Score=25.89 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=54.6
Q ss_pred cCCCCCcEEEeCccccHHHHH----HHHhCCCcEEEEcchh--HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--
Q 026858 64 FHSTRRRAIELGAGCGAAGMA----FYLLGLADIVLTDISP--VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-- 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~----la~~~~~~v~~~D~s~--~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 135 (232)
..++ ++|=.|+..| +|.. ++..|+ +|++++.+. ........+... ..++.+...|+.+.+....
T Consensus 4 ~~~k--~vlItGasgg-iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~ 75 (248)
T PRK07806 4 LPGK--TALVTGSSRG-IGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAA----GGRASAVGADLTDEESVAALM 75 (248)
T ss_pred CCCc--EEEEECCCCc-HHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHH
Confidence 3556 8998887544 3433 344577 788877653 222222222211 1235667777776543211
Q ss_pred -----CCCCccEEEEcccCCCc-------------ccHHHHHHHHHHhhCCCcEEEEE
Q 026858 136 -----LKPPFDLVIAADVVYIE-------------ESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 136 -----~~~~fD~Ii~~~~~~~~-------------~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
..+..|+|+.+...... .....+++.+.+.++.+|++++.
T Consensus 76 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 76 DTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 11358988865432110 01334566666666666776665
No 431
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.88 E-value=11 Score=32.51 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=28.6
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~ 100 (232)
.+++ +|.=+|+|. |+....-++. |+++++++|+++
T Consensus 191 ~~Gs--tvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~ 227 (375)
T KOG0022|consen 191 EPGS--TVAVFGLGGVGLAVAMGAKAAGASRIIGVDINP 227 (375)
T ss_pred CCCC--EEEEEecchHHHHHHHhHHhcCcccEEEEecCH
Confidence 3778 888899887 7766666665 889999999998
No 432
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=67.24 E-value=27 Score=30.22 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=51.1
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEe--ecCCCcccccCCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVL--YWNNQDQINALKP 138 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~~ 138 (232)
.++. +||=+|+|. |..+..+|+. |+.+++++|.++. ...+ + ..+.. ..+..... ++.... .....+
T Consensus 185 ~~g~--~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~---~lGa~--~~i~~~~~~~~~~~~v-~~~~~~ 255 (368)
T cd08300 185 EPGS--TVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELA-K---KFGAT--DCVNPKDHDKPIQQVL-VEMTDG 255 (368)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-H---HcCCC--EEEcccccchHHHHHH-HHHhCC
Confidence 3567 888888865 6666666665 7656999998873 2222 1 11111 00111100 000000 000123
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
.+|+|+-+ ... ...+....+.++++ |+++...
T Consensus 256 g~d~vid~--~g~----~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 256 GVDYTFEC--IGN----VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCcEEEEC--CCC----hHHHHHHHHhhccCCCeEEEEc
Confidence 68999853 221 23566667788886 8888764
No 433
>PRK06181 short chain dehydrogenase; Provisional
Probab=67.04 E-value=53 Score=26.55 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=41.0
Q ss_pred cEEEeCccccHHHHHH----HHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-------CC
Q 026858 70 RAIELGAGCGAAGMAF----YLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-------LK 137 (232)
Q Consensus 70 ~VLElGcGtG~~s~~l----a~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-------~~ 137 (232)
+||=.|+. |.++..+ +..|+ +|++++.++. .......+... ...+.+...|+.+...... .-
T Consensus 3 ~vlVtGas-g~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 76 (263)
T PRK06181 3 VVIITGAS-EGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADH----GGEALVVPTDVSDAEACERLIEAAVARF 76 (263)
T ss_pred EEEEecCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57766654 4444433 44477 8999998762 33333333222 2345667777766543211 12
Q ss_pred CCccEEEEcccC
Q 026858 138 PPFDLVIAADVV 149 (232)
Q Consensus 138 ~~fD~Ii~~~~~ 149 (232)
+..|.|+.+...
T Consensus 77 ~~id~vi~~ag~ 88 (263)
T PRK06181 77 GGIDILVNNAGI 88 (263)
T ss_pred CCCCEEEECCCc
Confidence 368999976544
No 434
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.85 E-value=1.3 Score=33.92 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCCCccEEEEcccCCC--cccHHHHHHHHHHhhCCCcEEEEE
Q 026858 136 LKPPFDLVIAADVVYI--EESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.+.+.|+|++.-++.+ ...-..+++.+++.|+|||.+-++
T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 4567899988766632 245567889999999999999987
No 435
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=66.69 E-value=77 Score=26.61 Aligned_cols=93 Identities=16% Similarity=0.070 Sum_probs=52.0
Q ss_pred cCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcC--------------CCCCCceEEEEee
Q 026858 64 FHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNK--------------PVLNKSLKTSVLY 126 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~--------------~~~~~~i~~~~~d 126 (232)
.... +||=+|||. |. ....++..|.++++.+|-+.+ ..+..+|...+. ..+++.+.....+
T Consensus 24 L~~S--rVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eLNP~V~V~~i~ 101 (287)
T PTZ00245 24 LMHT--SVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRLNPHVSVYDAV 101 (287)
T ss_pred HhhC--eEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHHCCCcEEEEcc
Confidence 3456 899999975 44 445666678889999998753 322222211110 0123334444443
Q ss_pred cCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCC
Q 026858 127 WNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVAD 168 (232)
Q Consensus 127 ~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~p 168 (232)
..-. ....|++|++.+ ...++.++.+...+..
T Consensus 102 ~rld-----~~n~fqvvV~~~-----~~le~av~~~~~~~~~ 133 (287)
T PTZ00245 102 TKLD-----GSSGTRVTMAAV-----ITEEDAVPHVQAALPC 133 (287)
T ss_pred cccC-----CcCCceEEEEEc-----ccHHHHHHHhccCCCc
Confidence 1111 134799999865 3456666666666554
No 436
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=65.72 E-value=83 Score=27.29 Aligned_cols=42 Identities=14% Similarity=-0.008 Sum_probs=31.3
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
..||.|+..-+= .....+..+..+.+.|+|||.++++...+.
T Consensus 75 ~~~d~~~~~~pk-~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~ 116 (342)
T PRK09489 75 ADCDTLIYYWPK-NKQEAQFQLMNLLSLLPVGTDIFVVGENRS 116 (342)
T ss_pred CCCCEEEEECCC-CHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Confidence 469999873222 223466778888899999999999987775
No 437
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=65.35 E-value=13 Score=32.17 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=30.2
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~ 101 (232)
.++. +|.=+|||. |+..+.-|+. |+.+++++|+++.
T Consensus 184 ~~G~--tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~ 221 (366)
T COG1062 184 EPGD--TVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE 221 (366)
T ss_pred CCCC--eEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH
Confidence 4677 899999987 8888777766 8889999999984
No 438
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=64.74 E-value=82 Score=26.25 Aligned_cols=84 Identities=12% Similarity=0.123 Sum_probs=54.9
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc-----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----- 133 (232)
.+.++ .+|--|..+|+ .+..+++.|+ +|+.++.++. +............. ..++.....|+.+.+..
T Consensus 5 ~l~gk--valVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~~~~l~~ 80 (270)
T KOG0725|consen 5 RLAGK--VALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYT-GGKVLAIVCDVSKEVDVEKLVE 80 (270)
T ss_pred cCCCc--EEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCC-CCeeEEEECcCCCHHHHHHHHH
Confidence 45778 88888888876 5577788898 9999998873 44444443333211 34566777777655421
Q ss_pred ---ccCCCCccEEEEcccCC
Q 026858 134 ---NALKPPFDLVIAADVVY 150 (232)
Q Consensus 134 ---~~~~~~fD~Ii~~~~~~ 150 (232)
....++.|+++.+....
T Consensus 81 ~~~~~~~GkidiLvnnag~~ 100 (270)
T KOG0725|consen 81 FAVEKFFGKIDILVNNAGAL 100 (270)
T ss_pred HHHHHhCCCCCEEEEcCCcC
Confidence 11257899999766553
No 439
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=64.74 E-value=29 Score=29.45 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=48.7
Q ss_pred cEEEeCc-c-ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGA-G-CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGc-G-tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+||=.|+ | .|..++.+|+. |+.++++++.++. ...+++. .+.. ..+.....++.... .....+.+|+|+-
T Consensus 157 ~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~--~vi~~~~~~~~~~i-~~~~~~gvd~vid 230 (345)
T cd08293 157 TMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD--AAINYKTDNVAERL-RELCPEGVDVYFD 230 (345)
T ss_pred EEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc--EEEECCCCCHHHHH-HHHCCCCceEEEE
Confidence 8888886 3 37677777765 7646899887762 2222221 1111 00110000110000 0011235899984
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+ ... ..+....++|+++|+++...
T Consensus 231 ~--~g~-----~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 231 N--VGG-----EISDTVISQMNENSHIILCG 254 (345)
T ss_pred C--CCc-----HHHHHHHHHhccCCEEEEEe
Confidence 3 221 13467788999999988754
No 440
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=64.70 E-value=91 Score=26.72 Aligned_cols=104 Identities=19% Similarity=0.164 Sum_probs=61.0
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHH-HHHHHHHHhcCC-CCCCceEEEEeecCCCccc-cc-CCCCccEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVM-PALKHNLKRNKP-VLNKSLKTSVLYWNNQDQI-NA-LKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~-~~~~~n~~~~~~-~~~~~i~~~~~d~~~~~~~-~~-~~~~fD~Ii 144 (232)
.||=||.|-|-.-...+++ ....+..+|++..+ +...+-...... --..++.....| +..+ .. ..+.||+|+
T Consensus 124 kvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGD---G~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 124 KVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGD---GFLFLEDLKENPFDVII 200 (337)
T ss_pred eEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEecc---HHHHHHHhccCCceEEE
Confidence 8999999987655444443 45689999999853 333322211111 112334443332 2211 11 246899999
Q ss_pred E--cccCCCc--ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 145 A--ADVVYIE--ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 145 ~--~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
. ++++... .-.+..+..+.+.||++|+++...
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 6 4444321 235667788999999999988865
No 441
>PRK05650 short chain dehydrogenase; Provisional
Probab=63.68 E-value=73 Score=25.94 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=41.4
Q ss_pred cEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-------CCC
Q 026858 70 RAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-------LKP 138 (232)
Q Consensus 70 ~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-------~~~ 138 (232)
+||=.|+..|+ ++..+++.|+ +|+.++.+.. .+.....+... ..++.+...|+.+...... ..+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREA----GGDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57767764443 2234445587 8999987762 33333333222 2235667777766543211 124
Q ss_pred CccEEEEcccC
Q 026858 139 PFDLVIAADVV 149 (232)
Q Consensus 139 ~fD~Ii~~~~~ 149 (232)
.+|.+|.+...
T Consensus 77 ~id~lI~~ag~ 87 (270)
T PRK05650 77 GIDVIVNNAGV 87 (270)
T ss_pred CCCEEEECCCC
Confidence 68999976554
No 442
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=63.60 E-value=11 Score=33.35 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=42.5
Q ss_pred CceEEEEeecCCCcccccCCCCccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 118 KSLKTSVLYWNNQDQINALKPPFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 118 ~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+++.....++.+... ...++++|.++.+|... .++.....++.+.+.++|||++++-.-.
T Consensus 275 drv~i~t~si~~~L~-~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLR-RLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CeEEEEeccHHHHHH-hCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 445555554433221 11257899999999884 5678888999999999999999996433
No 443
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=63.48 E-value=8.7 Score=28.18 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=25.0
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcch
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s 99 (232)
+|+=+|||. |. ++..+++.|.++++.+|.+
T Consensus 4 ~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 4 RVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred EEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 899999986 66 6677788899899999975
No 444
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=63.44 E-value=1e+02 Score=27.11 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=25.8
Q ss_pred cCCCCCcEEEeC-ccc-cHHHHHHHHh---CCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELG-AGC-GAAGMAFYLL---GLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElG-cGt-G~~s~~la~~---~~~~v~~~D~s~~ 101 (232)
.++. +||=+| +|. |..++.+|+. |+.+++++|.++.
T Consensus 174 ~~g~--~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~ 214 (410)
T cd08238 174 KPGG--NTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDE 214 (410)
T ss_pred CCCC--EEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHH
Confidence 3566 788887 465 7777777765 3447999998873
No 445
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=63.33 E-value=37 Score=30.04 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=30.4
Q ss_pred CccEEEEcccCC--------CcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh
Q 026858 139 PFDLVIAADVVY--------IEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA 192 (232)
Q Consensus 139 ~fD~Ii~~~~~~--------~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~ 192 (232)
..|+|+.+-+.- ....+..+++.+.+ +++| .+++....-.+.+.+.+.+.+.
T Consensus 73 ~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g-~lVV~~STv~pgtt~~l~~~~~ 132 (388)
T PRK15057 73 DADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPY-AVMVIKSTVPVGFTAAMHKKYR 132 (388)
T ss_pred CCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCC-CEEEEeeecCCchHHHHHHHhh
Confidence 468888754332 11355666677776 5555 5555555555566666666554
No 446
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=63.18 E-value=33 Score=29.52 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=47.7
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +||=.|+|. |.....+++. |+..+++++.++........ .... .-+.....++............+|+
T Consensus 187 ~g~--~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~---~g~~--~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 187 PGE--TVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE---LGAT--HTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCC--EEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH---hCCc--eEecCCcccHHHHHHHHhCCCCCCE
Confidence 556 777666653 4444555544 76348888876631111111 1110 0000000011000000001235999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+.+ +.. ...+..+.++++++|+++...
T Consensus 260 vld~--vg~----~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 260 VVEA--LGK----PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEe--CCC----HHHHHHHHHHHhcCCEEEEEc
Confidence 9853 221 135677888999999988653
No 447
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=63.02 E-value=21 Score=30.60 Aligned_cols=77 Identities=13% Similarity=0.035 Sum_probs=43.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---CC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---LK 137 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---~~ 137 (232)
..++. .++|.--|.|--+..+... +..+++++|.++. +..+.+.+ .....++.+...++.+....-. ..
T Consensus 18 ~~~~g--~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l----~~~~~r~~~~~~~F~~l~~~l~~~~~~ 91 (310)
T PF01795_consen 18 PKPGG--IYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERL----KKFDDRFIFIHGNFSNLDEYLKELNGI 91 (310)
T ss_dssp --TT---EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCT----CCCCTTEEEEES-GGGHHHHHHHTTTT
T ss_pred cCCCc--eEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHH----hhccceEEEEeccHHHHHHHHHHccCC
Confidence 34667 8999999999888777654 3359999999993 33333322 2234567777777665443111 12
Q ss_pred CCccEEEE
Q 026858 138 PPFDLVIA 145 (232)
Q Consensus 138 ~~fD~Ii~ 145 (232)
..+|-|+.
T Consensus 92 ~~~dgiL~ 99 (310)
T PF01795_consen 92 NKVDGILF 99 (310)
T ss_dssp S-EEEEEE
T ss_pred CccCEEEE
Confidence 35666665
No 448
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=63.02 E-value=23 Score=31.03 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=27.7
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcch
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s 99 (232)
...++ +||=+|||. |. +...+++.|.++++.+|.+
T Consensus 132 ~l~~~--~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEA--RVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcC--cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34666 899999985 55 5567778898899999987
No 449
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.89 E-value=82 Score=25.57 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=43.6
Q ss_pred ccCCCCCcEEEeCccc--cH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc--
Q 026858 63 DFHSTRRRAIELGAGC--GA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt--G~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-- 134 (232)
...++ .+|=.|+++ |+ ++..+++.|+ +|+.+|.+.. .+...+...... ...+...|..+.....
T Consensus 7 ~~~~k--~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~ 78 (258)
T PRK07533 7 PLAGK--RGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD-----APIFLPLDVREPGQLEAV 78 (258)
T ss_pred ccCCC--EEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc-----cceEEecCcCCHHHHHHH
Confidence 45678 899999864 32 3345556688 8988887752 111111111111 1235566776654321
Q ss_pred -----cCCCCccEEEEcccC
Q 026858 135 -----ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 -----~~~~~fD~Ii~~~~~ 149 (232)
...++.|+++.+..+
T Consensus 79 ~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 79 FARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHHHHcCCCCEEEEcCcc
Confidence 112578999976544
No 450
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=62.84 E-value=96 Score=26.36 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=24.2
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHH-HhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFY-LLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la-~~~~~~v~~~D~s~ 100 (232)
.++. +|+=+|+|. |....... ..+..+++.+|.++
T Consensus 176 l~~~--~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 176 LKGK--KVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred ccCC--EEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 3567 999999987 55433333 33666899999886
No 451
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=62.83 E-value=34 Score=25.81 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=50.0
Q ss_pred EEEeCccccH--HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 71 AIELGAGCGA--AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 71 VLElGcGtG~--~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
|.=||+|.+- ++..++..|. +|+....++. ++....+. .|...+...--........+. ...-...|+|+..-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~-~n~~~~~~~~l~~~i~~t~dl--~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETR-QNPKYLPGIKLPENIKATTDL--EEALEDADIIIIAV 77 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHT-SETTTSTTSBEETTEEEESSH--HHHHTT-SEEEE-S
T ss_pred EEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhC-CCCCCCCCcccCcccccccCH--HHHhCcccEEEecc
Confidence 4557888744 3345566676 9999999873 44444332 222111110000011111111 11123569998754
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+- ..++.+++.+...++++-.++.+.+
T Consensus 78 Ps---~~~~~~~~~l~~~l~~~~~ii~~~K 104 (157)
T PF01210_consen 78 PS---QAHREVLEQLAPYLKKGQIIISATK 104 (157)
T ss_dssp -G---GGHHHHHHHHTTTSHTT-EEEETS-
T ss_pred cH---HHHHHHHHHHhhccCCCCEEEEecC
Confidence 33 3567788888888877767666543
No 452
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=62.63 E-value=19 Score=30.89 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=30.2
Q ss_pred cccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH
Q 026858 62 LDFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV 101 (232)
Q Consensus 62 ~~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~ 101 (232)
.+..+. -|+=+|||- |. ..-.+++.|++++..+|.+.+
T Consensus 70 ~kl~~s--yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNS--YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQV 109 (430)
T ss_pred HHhcCc--EEEEEecCchhHHHHHHHHHhcCceEEEechhhc
Confidence 366778 899999987 77 446667889999999998763
No 453
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=62.53 E-value=1.2e+02 Score=28.44 Aligned_cols=81 Identities=20% Similarity=0.119 Sum_probs=44.7
Q ss_pred CCCCCcEEEeCccccHHHHHHH----HhCCCcEEEEcchhH-HHHHHHHHHhc-----CCCCCCceEEEEeecCCCcccc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFY----LLGLADIVLTDISPV-MPALKHNLKRN-----KPVLNKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la----~~~~~~v~~~D~s~~-~~~~~~n~~~~-----~~~~~~~i~~~~~d~~~~~~~~ 134 (232)
.++ +||=.|+ +|.+|..++ +.|+ +|++++.+.. .......+... +.....++.+...|+.+.+...
T Consensus 79 ~gK--vVLVTGA-TGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 79 DED--LAFVAGA-TGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred CCC--EEEEECC-CCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 455 6777766 455665444 3477 8998887762 32222222211 0001134677888887755432
Q ss_pred cCCCCccEEEEcccC
Q 026858 135 ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~ 149 (232)
..-+..|+||.+...
T Consensus 155 ~aLggiDiVVn~AG~ 169 (576)
T PLN03209 155 PALGNASVVICCIGA 169 (576)
T ss_pred HHhcCCCEEEEcccc
Confidence 223568999876443
No 454
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=62.46 E-value=95 Score=26.20 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=50.0
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.++. +||=.|+|. |.....+|+. |+ +++.++.++. ...+ ...+.. .-+.....++.. .... ...+
T Consensus 162 ~~~~--~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~----~~~g~~--~~i~~~~~~~~~--~~~~-~~~~ 229 (333)
T cd08296 162 KPGD--LVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLA----RKLGAH--HYIDTSKEDVAE--ALQE-LGGA 229 (333)
T ss_pred CCCC--EEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHH----HHcCCc--EEecCCCccHHH--HHHh-cCCC
Confidence 3567 888888655 5555556655 77 7899988762 2222 111110 000000000000 0001 1348
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+++.+ .- ....+....+.++++|+++...
T Consensus 230 d~vi~~--~g----~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 230 KLILAT--AP----NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CEEEEC--CC----chHHHHHHHHHcccCCEEEEEe
Confidence 988853 11 1346677788999999988754
No 455
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.35 E-value=13 Score=31.24 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=50.4
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcC------CCC---------CCceEEEEeecCCCc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNK------PVL---------NKSLKTSVLYWNNQD 131 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~------~~~---------~~~i~~~~~d~~~~~ 131 (232)
+|.=||+|+ |. ++..++..|. +|++.|.++ .+......+.... ... ..++... ..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~d- 77 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-----TD- 77 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-----CC-
Confidence 677789887 43 4455666687 899999987 3444333221110 000 0111111 11
Q ss_pred ccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 132 QINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 132 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
........|+|+.+-+ ...+....+++.+.+.++++..+.
T Consensus 78 -~~~a~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 78 -LAEAVKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred -HHHHhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 1111235799997532 223345667778888777766543
No 456
>PRK10083 putative oxidoreductase; Provisional
Probab=62.20 E-value=95 Score=26.13 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=49.5
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHH-h-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYL-L-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~-~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.++. +||=.|+|. |...+.+|+ . |+..++++|.++.-..... ..+.. .-+.....++.. ........+
T Consensus 159 ~~g~--~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~---~~Ga~--~~i~~~~~~~~~--~~~~~g~~~ 229 (339)
T PRK10083 159 TEQD--VALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK---ESGAD--WVINNAQEPLGE--ALEEKGIKP 229 (339)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH---HhCCc--EEecCccccHHH--HHhcCCCCC
Confidence 4566 788888765 556666666 3 8756888887763111111 11111 000000000000 000111125
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+|+-+ ... ...+....+.++++|+++...
T Consensus 230 d~vid~--~g~----~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 230 TLIIDA--ACH----PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CEEEEC--CCC----HHHHHHHHHHhhcCCEEEEEc
Confidence 677642 221 235677788999999988764
No 457
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=62.16 E-value=40 Score=28.59 Aligned_cols=33 Identities=15% Similarity=0.025 Sum_probs=23.3
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+|+|+-+. .. ...+..+.+.|+++|+++...
T Consensus 229 ~~~d~vld~~--g~----~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 229 EGVDVFLEMS--GA----PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CCCCEEEECC--CC----HHHHHHHHHhhcCCCEEEEEc
Confidence 3589998641 11 345677888899999988764
No 458
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.16 E-value=54 Score=27.38 Aligned_cols=102 Identities=21% Similarity=0.211 Sum_probs=52.1
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhc---C---CCC--------CCceEEEEeecCCCcc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRN---K---PVL--------NKSLKTSVLYWNNQDQ 132 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~---~---~~~--------~~~i~~~~~d~~~~~~ 132 (232)
+|.=||+|. |. ++..+++.|. +|++.|.++. ++......... . ..+ ...+... ..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-----~~-- 74 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-----LD-- 74 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-----Cc--
Confidence 577788876 43 4455566687 8999999873 44333221110 0 000 0011111 11
Q ss_pred cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 133 INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 133 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
....-...|+|+.+-+ ........++..+.+.++++..+......-.
T Consensus 75 ~~~~~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tSt~~ 121 (288)
T PRK09260 75 LKAAVADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTSTMS 121 (288)
T ss_pred HHHhhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 1011235799997532 2222234566778888888766554443333
No 459
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=61.53 E-value=96 Score=26.61 Aligned_cols=98 Identities=18% Similarity=0.106 Sum_probs=52.8
Q ss_pred cCCCCCcEEEeCccc--cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC-CC
Q 026858 64 FHSTRRRAIELGAGC--GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK-PP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGt--G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~ 139 (232)
.+++ +||=.|+.. |.+.+.+|+. |+ +++++-.++. ... -++..+.+ .-+.+..-+|..... .... ..
T Consensus 141 ~~g~--~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~--k~~-~~~~lGAd--~vi~y~~~~~~~~v~-~~t~g~g 211 (326)
T COG0604 141 KPGE--TVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSE--KLE-LLKELGAD--HVINYREEDFVEQVR-ELTGGKG 211 (326)
T ss_pred CCCC--EEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHH--HHH-HHHhcCCC--EEEcCCcccHHHHHH-HHcCCCC
Confidence 3577 899998544 5577777776 76 5666555541 111 22222211 012222222222211 0112 25
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|+|+-. . -...+....+.|+++|+++.+..
T Consensus 212 vDvv~D~--v-----G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 212 VDVVLDT--V-----GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred ceEEEEC--C-----CHHHHHHHHHHhccCCEEEEEec
Confidence 9999953 2 24466667888899999888654
No 460
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=61.07 E-value=31 Score=27.70 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=49.6
Q ss_pred HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-------CC-CCccEEEEcccCCC
Q 026858 81 AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-------LK-PPFDLVIAADVVYI 151 (232)
Q Consensus 81 ~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-------~~-~~fD~Ii~~~~~~~ 151 (232)
++..+++.|+ +|+.+|.++. .......+..... . .+...|..+...... .. ++.|++|.+.....
T Consensus 12 ia~~l~~~Ga-~V~~~~~~~~~~~~~~~~l~~~~~---~--~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~~ 85 (241)
T PF13561_consen 12 IARALAEEGA-NVILTDRNEEKLADALEELAKEYG---A--EVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGISP 85 (241)
T ss_dssp HHHHHHHTTE-EEEEEESSHHHHHHHHHHHHHHTT---S--EEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESCT
T ss_pred HHHHHHHCCC-EEEEEeCChHHHHHHHHHHHHHcC---C--ceEeecCcchHHHHHHHHHHHhhcCCCeEEEEecccccc
Confidence 3455566688 9999999873 3322333333221 2 346777765543211 12 78999886543332
Q ss_pred c----c-------------------cHHHHHHHHHHhhCCCcEEEEEE
Q 026858 152 E----E-------------------SAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 152 ~----~-------------------~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
. . ..-.+.+.+.+.++++|.+++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 86 PSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp GGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 2 1 12334444555677788877764
No 461
>PRK14851 hypothetical protein; Provisional
Probab=61.03 E-value=45 Score=31.90 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=28.8
Q ss_pred ccCCCCCcEEEeCcc-ccH-HHHHHHHhCCCcEEEEcchh
Q 026858 63 DFHSTRRRAIELGAG-CGA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 63 ~~~~~~~~VLElGcG-tG~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+..+. +|+=+||| .|. ....+++.|.++++.+|.+.
T Consensus 40 kL~~~--~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 40 RLAEA--KVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred HHhcC--eEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 33556 99999999 566 56788888999999999763
No 462
>PRK08589 short chain dehydrogenase; Validated
Probab=60.84 E-value=56 Score=26.78 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=47.2
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc------
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN------ 134 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~------ 134 (232)
..++ ++|=.|++.|+ ++..++..|+ +|++++.++........+... ..++.....|+.+.....
T Consensus 4 l~~k--~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 4 LENK--VAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSN----GGKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCCC--EEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhc----CCeEEEEEeecCCHHHHHHHHHHH
Confidence 3567 88888886654 3344555688 899999875333333333222 223567777877654321
Q ss_pred -cCCCCccEEEEcccC
Q 026858 135 -ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 -~~~~~fD~Ii~~~~~ 149 (232)
...+..|++|.+...
T Consensus 77 ~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 77 KEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHcCCcCEEEECCCC
Confidence 112568999976654
No 463
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=60.83 E-value=45 Score=28.27 Aligned_cols=99 Identities=17% Similarity=0.073 Sum_probs=47.6
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +||=.|+|. |.....+|+. |..+++++|.++.-....+ ..+.. .-+.....++............+|+
T Consensus 166 ~g~--~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~---~~g~~--~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (345)
T cd08286 166 PGD--TVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK---KLGAT--HTVNSAKGDAIEQVLELTDGRGVDV 238 (345)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH---HhCCC--ceeccccccHHHHHHHHhCCCCCCE
Confidence 455 666677654 4444445554 6348888887662111111 11110 0011111111000000001235999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+-+. . ....+..+.+.|+++|+++...
T Consensus 239 vld~~--g----~~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 239 VIEAV--G----IPATFELCQELVAPGGHIANVG 266 (345)
T ss_pred EEECC--C----CHHHHHHHHHhccCCcEEEEec
Confidence 98532 1 1335677788999999988653
No 464
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.80 E-value=25 Score=29.51 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=50.8
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhc------CCCCC--------CceEEEEeecCCCcc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRN------KPVLN--------KSLKTSVLYWNNQDQ 132 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~------~~~~~--------~~i~~~~~d~~~~~~ 132 (232)
+|.=||+|+ |. ++..++..|. +|++.|.++. +......+..+ ...+. .++... ...
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-----~~~- 78 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-----TDL- 78 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-----CCH-
Confidence 677788887 43 5566666687 9999999873 33322221111 00000 111111 111
Q ss_pred cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 133 INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 133 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
. .....|+|+.+- .........+++.+...++++..++
T Consensus 79 -~-~~~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 79 -E-DLADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -H-HhcCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 123579999752 2222334567788888888877654
No 465
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=60.72 E-value=38 Score=27.83 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=54.6
Q ss_pred CCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc------
Q 026858 65 HSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA------ 135 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~------ 135 (232)
.++ ++|=.|.-.|. ++..|+..+. .++++|-+..-..+...++... -..++.|.+.|+........
T Consensus 4 tGK--na~vtggagGIGl~~sk~Ll~kgi-k~~~i~~~~En~~a~akL~ai~--p~~~v~F~~~DVt~~~~~~~~f~ki~ 78 (261)
T KOG4169|consen 4 TGK--NALVTGGAGGIGLATSKALLEKGI-KVLVIDDSEENPEAIAKLQAIN--PSVSVIFIKCDVTNRGDLEAAFDKIL 78 (261)
T ss_pred cCc--eEEEecCCchhhHHHHHHHHHcCc-hheeehhhhhCHHHHHHHhccC--CCceEEEEEeccccHHHHHHHHHHHH
Confidence 467 77777754443 4456666688 7888887653222222222222 34567888888877443211
Q ss_pred -CCCCccEEEEcccCCCcccHHHHH
Q 026858 136 -LKPPFDLVIAADVVYIEESAAQLV 159 (232)
Q Consensus 136 -~~~~fD~Ii~~~~~~~~~~~~~~l 159 (232)
.-+..|+.|-...+....+++..+
T Consensus 79 ~~fg~iDIlINgAGi~~dkd~e~Ti 103 (261)
T KOG4169|consen 79 ATFGTIDILINGAGILDDKDWERTI 103 (261)
T ss_pred HHhCceEEEEcccccccchhHHHhh
Confidence 235789999888887777666544
No 466
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=60.62 E-value=41 Score=29.41 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=37.4
Q ss_pred EEEeCccccHHHHHHHH----hC-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 71 AIELGAGCGAAGMAFYL----LG-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 71 VLElGcGtG~~s~~la~----~~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
|+=||| |..+..+++ .. ..+++..|.+.. ++...... ...++....+|+.+...+...-...|+||
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~l~~~~~~~dvVi 72 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL------LGDRVEAVQVDVNDPESLAELLRGCDVVI 72 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--------TTTTEEEEE--TTTHHHHHHHHTTSSEEE
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc------cccceeEEEEecCCHHHHHHHHhcCCEEE
Confidence 566888 455544433 33 227999999872 22222211 23457899999887765433334679999
Q ss_pred EcccC
Q 026858 145 AADVV 149 (232)
Q Consensus 145 ~~~~~ 149 (232)
.+-..
T Consensus 73 n~~gp 77 (386)
T PF03435_consen 73 NCAGP 77 (386)
T ss_dssp E-SSG
T ss_pred ECCcc
Confidence 75443
No 467
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=60.53 E-value=99 Score=25.77 Aligned_cols=140 Identities=13% Similarity=0.185 Sum_probs=85.9
Q ss_pred eeechH---HHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHH
Q 026858 32 SVWPCS---LVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKH 107 (232)
Q Consensus 32 ~~W~~~---~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~ 107 (232)
++|... ..|..|+....+ ..++. . |..=||+-.++..+.+.. .++.++++-+. ....+.
T Consensus 66 RL~~a~~lpa~l~~yl~~i~~-------------lN~~~--~-l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~ 128 (279)
T COG2961 66 RLWQAADLPAELEPYLDAVRQ-------------LNPGG--G-LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRN 128 (279)
T ss_pred HHHhcCCchHHHHHHHHHHHH-------------hCCCC--C-cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHH
Confidence 566543 346666665544 44555 3 667778777766666654 48999998873 445555
Q ss_pred HHHhcCCCCCCceEEEEee-cCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhC--CCcEEEEEEeecChhHH
Q 026858 108 NLKRNKPVLNKSLKTSVLY-WNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVA--DDGVVLLGYQLRSPEAH 184 (232)
Q Consensus 108 n~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~--pgG~l~i~~~~r~~~~~ 184 (232)
|.... .++.+...| |...-..-...++=-+|+..+++....+...+++.+.+.++ ++|+..+=++...-...
T Consensus 129 ~f~~d-----~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~ 203 (279)
T COG2961 129 NFAGD-----RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQI 203 (279)
T ss_pred HhCCC-----cceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHH
Confidence 44321 234444443 21111111112345778877777777889999999999987 67887777665554556
Q ss_pred HHHHHHHhc
Q 026858 185 KLFWEMCAE 193 (232)
Q Consensus 185 ~~~~~~~~~ 193 (232)
..|.+.++.
T Consensus 204 ~~f~~~L~~ 212 (279)
T COG2961 204 RRFLRALEA 212 (279)
T ss_pred HHHHHHHhh
Confidence 777777664
No 468
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=60.50 E-value=43 Score=28.90 Aligned_cols=98 Identities=11% Similarity=0.036 Sum_probs=49.9
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEe--ecCCCcccccCCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVL--YWNNQDQINALKP 138 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~~ 138 (232)
.++. +||=.|+|. |.....+|+. |+..+++++.++. ...+ ... +.. ..+..... ++.... .....+
T Consensus 182 ~~g~--~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~-~~~---g~~--~~v~~~~~~~~~~~~l-~~~~~~ 252 (365)
T cd05279 182 TPGS--TCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKA-KQL---GAT--ECINPRDQDKPIVEVL-TEMTDG 252 (365)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHh---CCC--eecccccccchHHHHH-HHHhCC
Confidence 3566 777788765 5555555655 7645888886652 2222 111 110 00111111 000000 001123
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhC-CCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVA-DDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~-pgG~l~i~~ 176 (232)
.+|+|+-+. .. ...+....+.++ ++|+++...
T Consensus 253 ~~d~vid~~--g~----~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 253 GVDYAFEVI--GS----ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CCcEEEECC--CC----HHHHHHHHHHhccCCCEEEEEe
Confidence 589998532 11 345667788888 999988764
No 469
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.46 E-value=31 Score=29.00 Aligned_cols=99 Identities=21% Similarity=0.263 Sum_probs=51.0
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCC--CCceE-------EEEeecCCCcccccCC
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVL--NKSLK-------TSVLYWNNQDQINALK 137 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~--~~~i~-------~~~~d~~~~~~~~~~~ 137 (232)
+|-=||+|+ |. .+..++..|. .|+..|.++. ++.....+....... ...+. ...+..... .. ..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~--~~-~~ 82 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTD--LG-DF 82 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCC--HH-Hh
Confidence 678889987 44 5566677788 9999999973 443332222111000 00000 000111111 11 12
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhh-CCCcEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALV-ADDGVVL 173 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l-~pgG~l~ 173 (232)
...|+|+-+ +....+.-..++..+.+++ +|+..+.
T Consensus 83 ~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~ 118 (286)
T PRK07819 83 ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLA 118 (286)
T ss_pred CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 357999864 3334444556677888888 5654443
No 470
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=60.44 E-value=39 Score=28.47 Aligned_cols=88 Identities=14% Similarity=0.068 Sum_probs=44.1
Q ss_pred cEEEe--Cccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---c-ccC-CCC
Q 026858 70 RAIEL--GAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---I-NAL-KPP 139 (232)
Q Consensus 70 ~VLEl--GcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~-~~~-~~~ 139 (232)
++|=+ |+|. |...+.+|+. |+ ++++++.++. ...++ ..+.. .. ++...... . ... ...
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~----~~g~~-----~~--i~~~~~~~~~~v~~~~~~~~ 212 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLK----KIGAE-----YV--LNSSDPDFLEDLKELIAKLN 212 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----HcCCc-----EE--EECCCccHHHHHHHHhCCCC
Confidence 45443 5554 6666666665 77 7998887762 22221 12211 11 11111110 0 001 135
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+|+-+ ... .......+.++++|+++...
T Consensus 213 ~d~vid~--~g~-----~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 213 ATIFFDA--VGG-----GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CcEEEEC--CCc-----HHHHHHHHhhCCCCEEEEEE
Confidence 8998853 221 12344567789999988764
No 471
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=60.41 E-value=9.5 Score=35.97 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=28.0
Q ss_pred CCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcch
Q 026858 65 HSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s 99 (232)
... +||=+|||+ |. ++..|+..|.++++.+|.+
T Consensus 337 ~~~--kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 337 SQL--KVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred hcC--eEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 456 999999998 66 6678888899999999975
No 472
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=60.24 E-value=88 Score=25.09 Aligned_cols=80 Identities=13% Similarity=0.237 Sum_probs=46.1
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...++ ++|=.|++.|+ ++..+++.|+ +++.++.++. +......+... ...+.....|+.+.....
T Consensus 6 ~l~~k--~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 6 SLAGK--NILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQE----GIKAHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred cCCCC--EEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhc----CCeEEEEecCCCCHHHHHHHHH
Confidence 34567 88888876554 2244455587 8999998762 33333333221 123456667776654321
Q ss_pred ---cCCCCccEEEEcccC
Q 026858 135 ---ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~ 149 (232)
...+.+|.|+.+...
T Consensus 79 ~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 79 HIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 112568999986654
No 473
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=60.08 E-value=30 Score=28.63 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=56.3
Q ss_pred cEEEeCccccHHHHHHHHh------CCCcEEEEcchh-----------------------HHHHHHHHHHhcCCC---CC
Q 026858 70 RAIELGAGCGAAGMAFYLL------GLADIVLTDISP-----------------------VMPALKHNLKRNKPV---LN 117 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~------~~~~v~~~D~s~-----------------------~~~~~~~n~~~~~~~---~~ 117 (232)
.|+|.||--|..++.++.. ..+++.+.|.=+ .+.......+.|... ..
T Consensus 77 divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~~ 156 (248)
T PF05711_consen 77 DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLLD 156 (248)
T ss_dssp EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTSS
T ss_pred EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCCc
Confidence 6999999999877655321 234688887410 011122333333321 23
Q ss_pred CceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 118 KSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 118 ~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
.++.+.+..+.+..+. ....++-++.+---+| +.....++.++..|.|||.+++-+...
T Consensus 157 ~~v~~vkG~F~dTLp~-~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 157 DNVRFVKGWFPDTLPD-APIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TTEEEEES-HHHHCCC--TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred ccEEEECCcchhhhcc-CCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 5678877765433221 1123455555433334 456778889999999999999877554
No 474
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=60.08 E-value=58 Score=27.62 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=47.3
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +||=.|+|. |.....+++. |..++++++.++.-..... ..+.. .-+.....++...... ...+.+|+
T Consensus 163 ~g~--~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~---~~g~~--~~~~~~~~~~~~~~~~-~~~~~vd~ 234 (341)
T cd05281 163 SGK--SVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK---KMGAD--VVINPREEDVVEVKSV-TDGTGVDV 234 (341)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH---HhCcc--eeeCcccccHHHHHHH-cCCCCCCE
Confidence 556 677777654 5555555555 6546888865542111111 11110 0000101111000000 01235899
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+-+-. -...+..+.++|+++|+++...
T Consensus 235 vld~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 235 VLEMSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 986321 1335667788999999987654
No 475
>PRK07326 short chain dehydrogenase; Provisional
Probab=60.06 E-value=84 Score=24.79 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=42.6
Q ss_pred CCCCCcEEEeCccccHHHHHHH----HhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 65 HSTRRRAIELGAGCGAAGMAFY----LLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la----~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
.++ +||=.|+ +|.+|..++ ..|+ +|++++.++. .......+... ..+.....|..+......
T Consensus 5 ~~~--~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 5 KGK--VALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK-----GNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCC--EEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc-----CcEEEEEccCCCHHHHHHHHHH
Confidence 345 7888885 555554443 4477 8999998762 33333322211 235667777765543211
Q ss_pred ---CCCCccEEEEcccC
Q 026858 136 ---LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~~ 149 (232)
..+.+|.|+.+...
T Consensus 76 ~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 76 IVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12468999976543
No 476
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=59.88 E-value=1e+02 Score=25.69 Aligned_cols=87 Identities=23% Similarity=0.195 Sum_probs=47.6
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +||=.|+|. |.....+++. |+ ++++++.++. ...++. .+... ..+..... ....+|
T Consensus 155 ~g~--~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~-------~~~~~~~~----~~~~~d 216 (319)
T cd08242 155 PGD--KVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVET-------VLPDEAES----EGGGFD 216 (319)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCcE-------EeCccccc----cCCCCC
Confidence 566 788887654 4444444544 77 6888887763 222222 11110 01111111 124599
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+++-+ ... ...+....+.++++|+++..
T Consensus 217 ~vid~--~g~----~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 217 VVVEA--TGS----PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred EEEEC--CCC----hHHHHHHHHHhhcCCEEEEE
Confidence 99853 111 33566778889999998873
No 477
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.39 E-value=32 Score=29.69 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=25.8
Q ss_pred CCCCCcEEEeCcc-ccHHHHHHHHh-CCCcEEEEcchh
Q 026858 65 HSTRRRAIELGAG-CGAAGMAFYLL-GLADIVLTDISP 100 (232)
Q Consensus 65 ~~~~~~VLElGcG-tG~~s~~la~~-~~~~v~~~D~s~ 100 (232)
|++ .|-=+|.| -|.+++..|+. |. +|+++|.++
T Consensus 181 pG~--~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~ 215 (360)
T KOG0023|consen 181 PGK--WVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSS 215 (360)
T ss_pred CCc--EEEEecCcccchHHHHHHHHhCc-EEEEEeCCc
Confidence 778 55555554 58899988887 87 999999886
No 478
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=59.29 E-value=95 Score=26.20 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=50.1
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCc--cc-ccCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQD--QI-NALK 137 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~~ 137 (232)
.++. +||-.|+|. |...+.+|+. |+..+++++.++. .... . ..+.. . .++..... .. ....
T Consensus 158 ~~~~--~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l-~---~~g~~-----~--~~~~~~~~~~~~~~~~~ 224 (343)
T cd08236 158 TLGD--TVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVA-R---ELGAD-----D--TINPKEEDVEKVRELTE 224 (343)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-H---HcCCC-----E--EecCccccHHHHHHHhC
Confidence 3566 888888755 5555556655 7633888887663 2222 1 11100 1 11111110 00 0111
Q ss_pred -CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 -PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 -~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+|+++-+ .. -...+..+.++|+++|+++...
T Consensus 225 ~~~~d~vld~--~g----~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 225 GRGADLVIEA--AG----SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCCEEEEC--CC----CHHHHHHHHHHhhcCCEEEEEc
Confidence 249999864 11 1345677888999999988764
No 479
>PLN02702 L-idonate 5-dehydrogenase
Probab=58.96 E-value=36 Score=29.30 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=50.5
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEE--EeecCCCc-ccc-cC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTS--VLYWNNQD-QIN-AL 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~--~~d~~~~~-~~~-~~ 136 (232)
.++. +||=+|+|. |..++.+|+. |+..++++|.++. ...+ ...+.. ..+.+. ..++.... ... ..
T Consensus 180 ~~g~--~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~----~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ 251 (364)
T PLN02702 180 GPET--NVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVA----KQLGAD--EIVLVSTNIEDVESEVEEIQKAM 251 (364)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHhCCC--EEEecCcccccHHHHHHHHhhhc
Confidence 3566 788888764 5555666655 7756888887762 2211 111111 000000 00110000 000 01
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+.+|+|+-+- .. ...+....+.++++|+++...
T Consensus 252 ~~~~d~vid~~--g~----~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 252 GGGIDVSFDCV--GF----NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCCCEEEECC--CC----HHHHHHHHHHHhcCCEEEEEc
Confidence 23589988641 11 235777888999999987654
No 480
>PRK07062 short chain dehydrogenase; Provisional
Probab=58.83 E-value=90 Score=25.23 Aligned_cols=81 Identities=10% Similarity=0.088 Sum_probs=47.7
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN----- 134 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~----- 134 (232)
..++ .+|=.|++.|+ ++..+++.|+ +|++++.++. .......+.... ...++.....|+.+.....
T Consensus 6 l~~k--~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T PRK07062 6 LEGR--VAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKF--PGARLLAARCDVLDEADVAAFAAA 80 (265)
T ss_pred cCCC--EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhC--CCceEEEEEecCCCHHHHHHHHHH
Confidence 4567 89999987665 3344455688 8999998762 333333332221 1124566777877654321
Q ss_pred --cCCCCccEEEEcccC
Q 026858 135 --ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 --~~~~~fD~Ii~~~~~ 149 (232)
...+..|+++.+...
T Consensus 81 ~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 81 VEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 112568999876654
No 481
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=58.58 E-value=40 Score=23.60 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=24.4
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
..+|+|+..+ .+.-.+..+.+...+.|.-+....
T Consensus 46 ~~~Dvill~P------Qv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 46 PDYDLVILAP------QMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred cCCCEEEEcC------hHHHHHHHHHHHhhhcCCCEEEeC
Confidence 4689999864 556678888888888777555443
No 482
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=57.54 E-value=84 Score=28.23 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=23.7
Q ss_pred CCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 65 HSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
... +||=+|||. |. +...++..|.++++.+|-+.
T Consensus 19 ~~s--~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 19 ESA--HVCLLNATATGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hhC--eEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCc
Confidence 445 899999985 33 33444555888999999663
No 483
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=57.51 E-value=52 Score=27.86 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=49.0
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
+++ +||=.|+|. |...+.+|+. |+.+++.++.++.-..... ..+.. .-+....-++............+|+
T Consensus 163 ~g~--~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~---~lg~~--~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGE--DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELAR---KMGAT--RAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCC--eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH---HhCCc--EEecCccccHHHHHHHhcCCCCCCE
Confidence 566 777777764 5555555654 6646888876652111111 11110 0000000011000000001235899
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+-+. .. ...+..+.+.++++|.++...
T Consensus 236 v~d~~--g~----~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 236 GLEMS--GA----PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEECC--CC----HHHHHHHHHHHhcCCEEEEEe
Confidence 88532 11 346677788999999988875
No 484
>PRK08328 hypothetical protein; Provisional
Probab=57.46 E-value=11 Score=30.61 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=27.6
Q ss_pred cCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
..+. +|+=+|||. |. +...+++.|.++++.+|.+.
T Consensus 25 L~~~--~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 25 LKKA--KVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HhCC--cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3556 899999995 65 55777888999999999763
No 485
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=57.44 E-value=1e+02 Score=24.96 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=48.2
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
+..++ ++|=.|++.|+ ++..++..|+ +++.++.++. +.......... ..++.....|+.+......
T Consensus 7 ~~~~k--~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~ 79 (265)
T PRK07097 7 SLKGK--IALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYREL----GIEAHGYVCDVTDEDGVQAMVS 79 (265)
T ss_pred CCCCC--EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHH
Confidence 44667 89999987755 3344555688 8988887762 33333333322 2245677788776543211
Q ss_pred ----CCCCccEEEEcccC
Q 026858 136 ----LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~ 149 (232)
..++.|.++.+...
T Consensus 80 ~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 80 QIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHhCCCCCEEEECCCC
Confidence 12568999987655
No 486
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=57.19 E-value=1.2e+02 Score=25.47 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=50.0
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.++. +||=+|||. |.....+++. |. +++.++.++. .... +. ... . ..... ..........+.+
T Consensus 161 ~~~~--~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~-~~--~g~-~-----~~~~~--~~~~~~~~~~~~~ 226 (330)
T cd08245 161 RPGE--RVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELA-RK--LGA-D-----EVVDS--GAELDEQAAAGGA 226 (330)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HH--hCC-c-----EEecc--CCcchHHhccCCC
Confidence 3556 788888874 6555555555 77 7888887763 2222 21 111 0 00000 0000000012358
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+++.+. .. ...+..+.+.++++|+++...
T Consensus 227 d~vi~~~--~~----~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 227 DVILVTV--VS----GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CEEEECC--Cc----HHHHHHHHHhcccCCEEEEEC
Confidence 9888532 11 235677788999999988764
No 487
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=57.18 E-value=69 Score=27.11 Aligned_cols=97 Identities=13% Similarity=-0.005 Sum_probs=50.6
Q ss_pred cCCCCCcEEEeCc-c-ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEE-eecCCCcccccCCC
Q 026858 64 FHSTRRRAIELGA-G-CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSV-LYWNNQDQINALKP 138 (232)
Q Consensus 64 ~~~~~~~VLElGc-G-tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~ 138 (232)
.++. +||=.|+ | .|...+.+|+. |+ ++++++.++. ...++.. .+.. ..+.+.. -++.... .....+
T Consensus 150 ~~g~--~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~--~vi~~~~~~~~~~~i-~~~~~~ 220 (338)
T cd08295 150 KKGE--TVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFD--DAFNYKEEPDLDAAL-KRYFPN 220 (338)
T ss_pred CCCC--EEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCc--eeEEcCCcccHHHHH-HHhCCC
Confidence 3667 8888886 3 36666666665 77 7888876652 2222211 1111 0011000 0110000 000123
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+|+|+-+ .. ...+....++++++|+++...
T Consensus 221 gvd~v~d~--~g-----~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDN--VG-----GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEEC--CC-----HHHHHHHHHHhccCcEEEEec
Confidence 68988843 22 245677889999999988653
No 488
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=56.96 E-value=1e+02 Score=24.75 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=45.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHH----HHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAF----YLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~l----a~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 135 (232)
.+.++ +||=.|+ +|.++..+ +..|+ +|++++.++. .......+... ..++.....|..+......
T Consensus 7 ~~~~k--~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~----~~~~~~~~~D~~~~~~~~~~~ 78 (255)
T PRK07523 7 DLTGR--RALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQ----GLSAHALAFDVTDHDAVRAAI 78 (255)
T ss_pred CCCCC--EEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhc----CceEEEEEccCCCHHHHHHHH
Confidence 34677 8998886 44445444 44588 8999998763 33333333221 1235666777766543211
Q ss_pred -----CCCCccEEEEcccC
Q 026858 136 -----LKPPFDLVIAADVV 149 (232)
Q Consensus 136 -----~~~~fD~Ii~~~~~ 149 (232)
..+..|.++.+...
T Consensus 79 ~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 79 DAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 12468999976654
No 489
>PRK08862 short chain dehydrogenase; Provisional
Probab=56.96 E-value=52 Score=26.35 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=45.9
Q ss_pred CCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc------
Q 026858 65 HSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN------ 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~------ 134 (232)
.++ ++|=.|++.|+ ++..+++.|+ +|+.++.++. ++...+.+.... ..+.....|..+.+...
T Consensus 4 ~~k--~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~----~~~~~~~~D~~~~~~~~~~~~~~ 76 (227)
T PRK08862 4 KSS--IILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT----DNVYSFQLKDFSQESIRHLFDAI 76 (227)
T ss_pred CCe--EEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC----CCeEEEEccCCCHHHHHHHHHHH
Confidence 567 89999998876 4455666688 8999988762 444433333322 22445556665544221
Q ss_pred -cCCC-CccEEEEcc
Q 026858 135 -ALKP-PFDLVIAAD 147 (232)
Q Consensus 135 -~~~~-~fD~Ii~~~ 147 (232)
...+ ..|+++.+.
T Consensus 77 ~~~~g~~iD~li~na 91 (227)
T PRK08862 77 EQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHhCCCCCEEEECC
Confidence 1124 799999865
No 490
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.06 E-value=24 Score=30.22 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=37.9
Q ss_pred CCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhC-CCc--EEEEcchhH
Q 026858 27 MHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLG-LAD--IVLTDISPV 101 (232)
Q Consensus 27 ~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~-~~~--v~~~D~s~~ 101 (232)
.+++.|+|.--..+-+++.+ .. ... .|+.||||.-.+...+...+ ... ++=+|.+++
T Consensus 65 RGy~~R~~aI~~~v~~Fl~~-~~---------------~~~--qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~ 124 (335)
T KOG2918|consen 65 RGYWARTMAIRHAVRAFLEQ-TD---------------GKK--QIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEV 124 (335)
T ss_pred chhhHHHHHHHHHHHHHHHh-cC---------------Cce--EEEEcCCCccchhhhhhccCCCCcceEEEecCcHH
Confidence 56667777777777777766 22 224 99999999988887776553 334 444555553
No 491
>PRK05866 short chain dehydrogenase; Provisional
Probab=55.89 E-value=66 Score=26.85 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=45.5
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
..++ +||=.|++.|+ ++..+++.|+ +|++++.++. ++......... ...+.+...|+.+......
T Consensus 38 ~~~k--~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~----~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 38 LTGK--RILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRA----GGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHH
Confidence 3456 88888876554 2233445587 8999998762 33333333221 1235667777766542111
Q ss_pred ---CCCCccEEEEcccC
Q 026858 136 ---LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~~ 149 (232)
..+..|+++.+...
T Consensus 111 ~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 111 VEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12468999987654
No 492
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=55.30 E-value=15 Score=29.69 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=27.6
Q ss_pred cCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
...+ +|+=+|||. |. ....+++.|.++++.+|.+.
T Consensus 19 L~~~--~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNA--RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCC--cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 3456 999999996 55 66777888999999998763
No 493
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.99 E-value=1.1e+02 Score=24.75 Aligned_cols=79 Identities=9% Similarity=-0.000 Sum_probs=42.4
Q ss_pred cCCCCCcEEEeCccc-cHHH----HHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--
Q 026858 64 FHSTRRRAIELGAGC-GAAG----MAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-- 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s----~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 135 (232)
..++ ++|=.|+++ +-+| ..+++.|+ +|+.++.+.. .....+-..... ..++.....|+.+......
T Consensus 5 ~~~k--~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~ 78 (257)
T PRK08594 5 LEGK--TYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE---GQESLLLPCDVTSDEEITACF 78 (257)
T ss_pred cCCC--EEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHH
Confidence 4567 899999762 3333 44555688 8888865421 111111111111 1345667778776643211
Q ss_pred -----CCCCccEEEEccc
Q 026858 136 -----LKPPFDLVIAADV 148 (232)
Q Consensus 136 -----~~~~fD~Ii~~~~ 148 (232)
..++.|+++.+..
T Consensus 79 ~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 79 ETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHHhCCCccEEEECcc
Confidence 1267899986544
No 494
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=54.68 E-value=1.2e+02 Score=24.70 Aligned_cols=93 Identities=19% Similarity=0.134 Sum_probs=50.4
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +||=.|||. |...+.+|+. |+.++++++.++......+.. .... .+ ....... .....+|
T Consensus 96 ~~g~--~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~--g~~~---~~----~~~~~~~---~~~~~~d 161 (277)
T cd08255 96 RLGE--RVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL--GPAD---PV----AADTADE---IGGRGAD 161 (277)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc--CCCc---cc----cccchhh---hcCCCCC
Confidence 3567 888888865 5565666655 763399998776311121211 1000 00 0000000 0123589
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+-+-. . ...+....+.++++|+++...
T Consensus 162 ~vl~~~~--~----~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 162 VVIEASG--S----PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEEccC--C----hHHHHHHHHHhcCCcEEEEEe
Confidence 9985311 1 236677788899999988764
No 495
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=54.46 E-value=21 Score=33.45 Aligned_cols=34 Identities=21% Similarity=0.054 Sum_probs=27.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP 100 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~ 100 (232)
+.. .||||||.+|.....+++. + .+-|+|+|+-+
T Consensus 44 ~a~--~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 44 KAH--VVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccc--hheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 556 8999999999988888776 2 23899999875
No 496
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=54.43 E-value=53 Score=27.29 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV 101 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~ 101 (232)
..++. .|||--+|+|..++.+.+.+- .++++++++.
T Consensus 220 s~~~d--iVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~ 255 (302)
T COG0863 220 SFPGD--IVLDPFAGSGTTGIAAKNLGR-RFIGIEINPE 255 (302)
T ss_pred CCCCC--EEeecCCCCChHHHHHHHcCC-ceEEEecCHH
Confidence 55778 999999999999999988886 9999999984
No 497
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=54.30 E-value=51 Score=30.41 Aligned_cols=122 Identities=14% Similarity=0.142 Sum_probs=56.8
Q ss_pred CcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-----HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 69 RRAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-----MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 69 ~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-----~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..+|=+|+|| |. ++..+..=|.++++++|.+.+ +++...+.+.....-..+......... ..++.. ..--
T Consensus 341 ~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk--~IfP~m-~atG 417 (669)
T KOG2337|consen 341 TKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLK--EIFPSM-EATG 417 (669)
T ss_pred ceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHH--HhCccc-cccc
Confidence 3799999998 43 333333338889999998752 222222221111000000000000000 001111 1123
Q ss_pred EEEEcccCCCc---ccHH---HHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc
Q 026858 142 LVIAADVVYIE---ESAA---QLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE 193 (232)
Q Consensus 142 ~Ii~~~~~~~~---~~~~---~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~ 193 (232)
++++.+...++ +.++ .=++.+.++.+..-.+++....|...+.-.++...++
T Consensus 418 ~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~ 475 (669)
T KOG2337|consen 418 YVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKN 475 (669)
T ss_pred eEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhc
Confidence 44554544322 2333 3345566677888888887777765555555554443
No 498
>PRK06128 oxidoreductase; Provisional
Probab=53.96 E-value=1.3e+02 Score=25.06 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=42.7
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH---HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV---MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN--- 134 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~---~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~--- 134 (232)
..++ +||=.|+..|+ ++..+++.|+ +|+.++.+.. .......+... ..++.+...|+.+.....
T Consensus 53 l~~k--~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~ 125 (300)
T PRK06128 53 LQGR--KALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAE----GRKAVALPGDLKDEAFCRQLV 125 (300)
T ss_pred cCCC--EEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHc----CCeEEEEecCCCCHHHHHHHH
Confidence 4567 89999976554 3344455587 7887765431 22222222221 223456667776643211
Q ss_pred ----cCCCCccEEEEcccC
Q 026858 135 ----ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ----~~~~~fD~Ii~~~~~ 149 (232)
...+..|++|.+...
T Consensus 126 ~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 126 ERAVKELGGLDILVNIAGK 144 (300)
T ss_pred HHHHHHhCCCCEEEECCcc
Confidence 112468999976654
No 499
>PRK07035 short chain dehydrogenase; Provisional
Probab=53.96 E-value=67 Score=25.71 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=45.6
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...++ +||=.|++.|+ ++..+++.|+ +|++++.+. ........+.... ..+.+...|+.+.....
T Consensus 5 ~l~~k--~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~ 77 (252)
T PRK07035 5 DLTGK--IALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG----GKAEALACHIGEMEQIDALFA 77 (252)
T ss_pred ccCCC--EEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHHHH
Confidence 34567 88889987765 3344455687 899999875 2333333332221 23455666766554221
Q ss_pred ---cCCCCccEEEEccc
Q 026858 135 ---ALKPPFDLVIAADV 148 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~ 148 (232)
..-++.|+++.+..
T Consensus 78 ~~~~~~~~id~li~~ag 94 (252)
T PRK07035 78 HIRERHGRLDILVNNAA 94 (252)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 11246899996554
No 500
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=53.87 E-value=52 Score=26.56 Aligned_cols=80 Identities=13% Similarity=0.179 Sum_probs=46.3
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
...++ +||=.|++.|+ ++..++..|+ +++.++.+...+......... ..++.+...|..+......
T Consensus 12 ~l~~k--~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~i~~~~~~ 84 (258)
T PRK06935 12 SLDGK--VAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTNWDETRRLIEKE----GRKVTFVQVDLTKPESAEKVVKE 84 (258)
T ss_pred cCCCC--EEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHH
Confidence 34667 89999987765 3344455688 888887764333333222221 2345677777776543211
Q ss_pred ---CCCCccEEEEcccC
Q 026858 136 ---LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~~ 149 (232)
..+..|.++.+...
T Consensus 85 ~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 85 ALEEFGKIDILVNNAGT 101 (258)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12468999976543
Done!