BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026861
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BE7|A Chain A, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|B Chain B, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|C Chain C, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
Length = 326
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L Q + + A + EV + DV+Y TR+Q+ERF E Y+ + +I+ + L
Sbjct: 214 ICDELDEQNISYATYASIEEVVPEIDVLYMTRVQKERFDETE--YQHMKAGFILSASSLV 271
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA+NG+Y R ALL L+L
Sbjct: 272 HAKPNLKVLHPLPRVDEIATDVDKTPYAYYFQQAENGVYAREALLALVL 320
>pdb|2A0F|A Chain A, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2A0F|C Chain C, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2HSE|A Chain A, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
pdb|2HSE|C Chain C, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
Length = 310
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLAPSE--YANVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|9ATC|A Chain A, Atcase Y165f Mutant
Length = 310
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YANVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|4E2F|I Chain I, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|K Chain K, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|G Chain G, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|E Chain E, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
Length = 310
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSK--YANVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|1ACM|A Chain A, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
pdb|1ACM|C Chain C, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
Length = 310
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YANVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|1I5O|A Chain A, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1I5O|C Chain C, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1GQ3|A Chain A, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
pdb|1GQ3|B Chain B, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
pdb|1GQ3|C Chain C, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
Length = 310
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YANVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|1TTH|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TTH|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TU0|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TU0|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TUG|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1TUG|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
Length = 310
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YANVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|1RAA|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAA|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|A Chain A, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|C Chain C, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|A Chain A, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|C Chain C, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|3CSU|A Chain A, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|B Chain B, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|C Chain C, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|1Q95|A Chain A, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|B Chain B, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|C Chain C, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|D Chain D, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|E Chain E, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|F Chain F, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|A Chain A, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|B Chain B, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|C Chain C, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|D Chain D, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|E Chain E, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|F Chain F, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0C|A Chain A, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1R0C|G Chain G, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1ZA1|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA1|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA2|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|1ZA2|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|2AIR|A Chain A, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2AIR|G Chain G, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2FZC|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZC|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZG|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZG|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZK|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2FZK|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2H3E|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2H3E|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2IPO|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2IPO|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2QG9|A Chain A, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QG9|C Chain C, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QGF|A Chain A, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
pdb|2QGF|C Chain C, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
pdb|3D7S|A Chain A, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3D7S|C Chain C, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|4F04|A Chain A, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4F04|C Chain C, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4FYV|A Chain A, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYV|C Chain C, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYW|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYW|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYX|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYX|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYY|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
pdb|4FYY|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
Length = 310
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YANVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|1AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|1AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|2AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|2AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|4AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|4AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|5AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|5AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|7AT1|A Chain A, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
pdb|7AT1|C Chain C, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
pdb|8AT1|A Chain A, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|8AT1|C Chain C, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|8ATC|A Chain A, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|8ATC|C Chain C, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|1NBE|A Chain A, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
pdb|1NBE|C Chain C, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
Length = 310
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YANVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|1D09|A Chain A, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1D09|C Chain C, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
Length = 310
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YANVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|1XJW|A Chain A, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
pdb|1XJW|C Chain C, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
Length = 310
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YANVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|1EKX|A Chain A, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
pdb|1EKX|B Chain B, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
pdb|1EKX|C Chain C, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
Length = 311
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 199 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YANVKAQFVLRASDLH 256
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 257 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 305
>pdb|1SKU|A Chain A, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1SKU|C Chain C, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
Length = 310
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YANVNAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|3MPU|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|C Chain C, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|E Chain E, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3NPM|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked C6
Aspartate Transcarbamoylase Enzyme
Length = 310
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YCNVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|1ML4|A Chain A, The Pala-Liganded Aspartate Transcarbamoylase Catalytic
Subunit From Pyrococcus Abyssi
Length = 308
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I + L +G++ E+ L +V K DV+Y TRIQ+ERF + + Y + +G Y V+ VL+
Sbjct: 198 IVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQE-YLKVKGSYQVNLKVLE 256
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ ++HPLPR+DEI +VD A YFRQ NG+ +RMALL L+L
Sbjct: 257 KAKDELRIMHPLPRVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVL 305
>pdb|1EZZ|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1EZZ|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1F1B|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1F1B|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
Length = 310
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE--YANVKAQFVLRASDLH 255
Query: 181 VMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPL R+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 256 NAKANMKVLHPLARVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>pdb|3LXM|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
pdb|3LXM|B Chain B, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
pdb|3LXM|C Chain C, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
Length = 335
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 130 VEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVL 189
+E+ L EV + D++Y TR+Q+ER Y + ++I+ + L + VL
Sbjct: 232 IEYSLHESLEEVVPELDILYMTRVQKERLDPSE--YANVKAQFILRSSDLTGARDNLKVL 289
Query: 190 HPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
HPLPR+DEIT DVD P A YF+QA NG++ R ALL L+L
Sbjct: 290 HPLPRIDEITTDVDKTPYAYYFQQAGNGIFARQALLALVL 329
>pdb|1PG5|A Chain A, Crystal Structure Of The Unligated (t-state) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 299
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 133 EESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPL 192
+E + EV ++ DV+Y TRIQ+ERF + + YE+ +G YIV ++ M+K +++LHPL
Sbjct: 202 KEVENPFEVINEVDVLYVTRIQKERFVDEME-YEKIKGSYIVSLDLANKMKKDSIILHPL 260
Query: 193 PRLDEITVDVDADPRAAYFRQAKNGLYIRMALL 225
PR++EI VD +A YF QA G+ +RM++L
Sbjct: 261 PRVNEIDRKVDKTTKAKYFEQASYGVPVRMSIL 293
>pdb|2BE9|A Chain A, Crystal Structure Of The Ctp-Liganded (T-State) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 300
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 133 EESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPL 192
+E + EV ++ DV+Y TRIQ+ERF + + YE+ +G YIV ++ M+K +++LHPL
Sbjct: 203 KEVENPFEVINEVDVLYVTRIQKERFVDEME-YEKIKGSYIVSLDLANKMKKDSIILHPL 261
Query: 193 PRLDEITVDVDADPRAAYFRQAKNGLYIRMALL 225
PR++EI VD +A YF QA G+ +RM++L
Sbjct: 262 PRVNEIDRKVDKTTKAKYFEQASYGVPVRMSIL 294
>pdb|2ATC|A Chain A, Crystal And Molecular Structures Of Native And
Ctp-Liganded Aspartate Carbamoyltransferase From
Escherichia Coli
Length = 305
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQ 180
I D L +G+ W + + EV TR+Q+ER Y + +++V N L
Sbjct: 198 ILDMLDEKGIAWSLHSSIEEV--------MTRVQKERLDPSE--YAXVKAQFLVRANSLG 247
Query: 181 VMEK---HAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ +A VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 248 GLHNAKMNAKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 299
>pdb|2RGW|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|3E2P|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|I Chain I, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|J Chain J, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|K Chain K, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|L Chain L, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|M Chain M, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|N Chain N, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|4EKN|B Chain B, Structure Of The Catalytic Chain Of Methanococcus
Jannaschii Aspartate Transcarbamoylase In A Hexagonal
Crystal Form
Length = 306
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 72/110 (65%), Gaps = 3/110 (2%)
Query: 120 DIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVL 179
DI + L ++ +++ E L ++ DV+Y TRIQ+ERF + + YE+ +G Y + + +
Sbjct: 194 DIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNE-YEKVKGSYKIKREYV 252
Query: 180 QVMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ K +++HPLPR+DEI DVD P+A YF+Q+ G+ +RMA+LK L+
Sbjct: 253 E--GKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLI 300
>pdb|2AT2|A Chain A, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
pdb|2AT2|B Chain B, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
pdb|2AT2|C Chain C, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
Length = 300
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 140 EVASKCDVVYQTRIQRERFGERTDLYEEAR-GKYIVDQNVLQVMEKHAVVLHPLP--RLD 196
E DVV RIQ ER ++ + +E KY + + M++HA+++HP P R
Sbjct: 199 EAVESSDVVMLLRIQNER--HQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPAPVNRGV 256
Query: 197 EITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
EI + ++ F+Q KNG++IRMA+++ L
Sbjct: 257 EIDDSLVESEKSRIFKQMKNGVFIRMAVIQCAL 289
>pdb|3R7D|A Chain A, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7D|B Chain B, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7D|C Chain C, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7F|A Chain A, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7F|B Chain B, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7F|C Chain C, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7L|A Chain A, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|B Chain B, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|C Chain C, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|D Chain D, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|E Chain E, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|F Chain F, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
Length = 304
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 140 EVASKCDVVYQTRIQRERFGERTDLYEEAR-GKYIVDQNVLQVMEKHAVVLHPLP--RLD 196
E DVV RIQ ER ++ + +E KY + + M++HA+++HP P R
Sbjct: 199 EAVESSDVVMLLRIQNER--HQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPAPVNRGV 256
Query: 197 EITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
EI + ++ F+Q KNG++IRMA+++ L
Sbjct: 257 EIDDSLVESEKSRIFKQMKNGVFIRMAVIQRAL 289
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 168 ARGKYIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALL 225
A + VD+ ++ A+ +H LP R +E+T V P++ + +A+N L+++ AL+
Sbjct: 240 AFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQSVVWDEAENRLHVQKALM 299
Query: 226 KLLLVG 231
+ LL+G
Sbjct: 300 EFLLLG 305
>pdb|2I6U|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase
Complexed With Carbamoyl Phosphate And L-Norvaline From
Mycobacterium Tuberculosis (Rv1656) At 2.2 A
pdb|2I6U|B Chain B, Crystal Structure Of Ornithine Carbamoyltransferase
Complexed With Carbamoyl Phosphate And L-Norvaline From
Mycobacterium Tuberculosis (Rv1656) At 2.2 A
pdb|2I6U|C Chain C, Crystal Structure Of Ornithine Carbamoyltransferase
Complexed With Carbamoyl Phosphate And L-Norvaline From
Mycobacterium Tuberculosis (Rv1656) At 2.2 A
pdb|2P2G|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|B Chain B, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|C Chain C, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|D Chain D, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|E Chain E, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|F Chain F, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
Length = 307
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 172 YIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ ++ +L + + A+VLH LP R DEIT V P +A + +A+N L+ + ALL LL
Sbjct: 245 FQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDGPASAVWDEAENRLHAQKALLVWLL 304
>pdb|3GD5|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|B Chain B, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|C Chain C, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|D Chain D, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|E Chain E, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|F Chain F, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
Length = 323
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 28/97 (28%)
Query: 163 DLYEEARGKYIV-------------DQNVLQVMEKH-------------AVVLHPLP--R 194
D +E ARG +I+ Q+ LQ+ E++ A+VLH LP R
Sbjct: 218 DPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHR 277
Query: 195 LDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
+EIT +V PR+ + +A+N L+ + A+L L+ G
Sbjct: 278 GEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMGG 314
>pdb|3TPF|A Chain A, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|B Chain B, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|C Chain C, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|D Chain D, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|E Chain E, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|F Chain F, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
Length = 307
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 172 YIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228
+ +D+ V K A++LH LP R E++ ++ F +A+N LY+ ALL L
Sbjct: 242 FXIDEKAXSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFL 300
>pdb|1FB5|A Chain A, Low Resolution Structure Of Ovine Ornithine
Transcarbmoylase In The Unliganded State
Length = 320
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 124 YLTSQGVEWEESADLMEVASKCDV-VYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVM 182
Y G + + D +E A +V + T I R E+ + +G Y V+ +V
Sbjct: 202 YAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQG-YQVNSKTAKVA 260
Query: 183 EKHAVVLHPLPR-LDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230
LH LPR +E+ DV PR+ F +A+N + MA++ LL
Sbjct: 261 ASAWTFLHCLPRKPEEVDDDVFYSPRSLVFPEAENRKWTIMAVMVSLLT 309
>pdb|1A1S|A Chain A, Ornithine Carbamoyltransferase From Pyrococcus Furiosus
Length = 314
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 129 GVEWEESADLMEVASKCDVVYQ----TRIQRERFGERTDLYEEARGKYIVDQNVLQVMEK 184
G +E D ++ DV+Y + Q ER ++ + V++++++ +
Sbjct: 207 GGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFR----PFQVNKDLVKHAKP 262
Query: 185 HAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
+ +H LP R +E+T DV P + + QA+N L+ + A+L L++ G
Sbjct: 263 DYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVMGG 311
>pdb|1PVV|A Chain A, Refined Structure Of Pyrococcus Furiosus Ornithine
Carbamoyltransferase At 1.87 A
Length = 315
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 129 GVEWEESADLMEVASKCDVVYQ----TRIQRERFGERTDLYEEARGKYIVDQNVLQVMEK 184
G +E D ++ DV+Y + Q ER ++ + V++++++ +
Sbjct: 208 GGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFR----PFQVNKDLVKHAKP 263
Query: 185 HAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
+ +H LP R +E+T DV P + + QA+N L+ + A+L L++ G
Sbjct: 264 DYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVMGG 312
>pdb|2EF0|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From
Thermus Thermophilus
Length = 301
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 172 YIVDQNVLQVMEKHAVVLHPLPRL--DEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ V+ +L+++ V LH LP +E T + PR+ F QA+N L+ A+L LL
Sbjct: 241 FQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHGPRSRVFDQAENRLHTAKAVLLTLL 300
>pdb|4EP1|A Chain A, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
pdb|4EP1|B Chain B, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
Length = 340
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 189 LHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALL 225
LH LP R +E+T ++ P++ F QA N L+ + ALL
Sbjct: 291 LHCLPAHREEEVTGEIIDGPQSIVFEQAGNRLHAQKALL 329
>pdb|3BXW|B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
pdb|3BXW|A Chain A, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
Length = 393
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 117 FEDDIKDYLTSQGVEWEESA-DLMEV-ASKCDVVYQTRIQRERFGERTDLYEEARGKYIV 174
F D+ Y+T W D+ +V SK + +Q +R G E G + V
Sbjct: 77 FAGDVLGYVTP----WNSHGYDVTKVFGSKFTQISPVWLQLKRRGREM---FEVTGLHDV 129
Query: 175 DQNVLQVMEKHAVVLHPLPRL 195
DQ ++ + KHA LH +PRL
Sbjct: 130 DQGWMRAVRKHAKGLHIVPRL 150
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 96 KFQLDDVIEAQQFDRDILNA--IFEDDIKDYLTSQGVEWEESADLM--EVASKCDVVYQT 151
K + DV DRD+ A + E+D+K + + G + S + + +V +C V +T
Sbjct: 283 KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEET 342
Query: 152 RIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLH 190
+I ER+ T + I+ Q ME+ LH
Sbjct: 343 QIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLH 381
>pdb|1OTH|A Chain A, Crystal Structure Of Human Ornithine Transcarbamoylase
Complexed With N-Phosphonacetyl-L-Ornithine
pdb|1C9Y|A Chain A, Human Ornithine Transcarbamylase: Crystallographic
Insights Into Substrate Recognition And Catalytic
Mechanism
pdb|1EP9|A Chain A, Human Ornithine Transcarbamylase: Crystallographic
Insights Into Substrate Recognition And Conformational
Change
pdb|1FVO|A Chain A, Crystal Structure Of Human Ornithine Transcarbamylase
Complexed With Carbamoyl Phosphate
pdb|1FVO|B Chain B, Crystal Structure Of Human Ornithine Transcarbamylase
Complexed With Carbamoyl Phosphate
Length = 321
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 124 YLTSQGVEWEESADLMEVASKCDV-VYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVM 182
Y G + + D +E A +V + T I R E+ + +G Y V +V
Sbjct: 203 YAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQG-YQVTMKTAKVA 261
Query: 183 EKHAVVLHPLPR-LDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVGW 232
LH LPR +E+ +V PR+ F +A+N + MA++ LL +
Sbjct: 262 ASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTDY 312
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 84 ETQSTPSFTIGKKFQLDDVIEAQQFDRDILNAIFEDDIKDYLTSQGVEWEESADL 138
ETQ P+FT G + DDV D DI+ D D + + ++W+ +L
Sbjct: 373 ETQPYPAFTRGVE---DDVFIKYPNDGDIVWGKVWPDFPDVVVNGSLDWDSQVEL 424
>pdb|3MT1|A Chain A, Crystal Structure Of Putative Carboxynorspermidine
Decarboxylase Protein From Sinorhizobium Meliloti
pdb|3MT1|B Chain B, Crystal Structure Of Putative Carboxynorspermidine
Decarboxylase Protein From Sinorhizobium Meliloti
Length = 365
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 148 VYQTRIQRERFGERTDLYEEARGKYIVDQNV 178
+++ R+ RERFG+ T Y A G +D+ V
Sbjct: 60 LFEVRLGRERFGKETHAYSVAYGDNEIDEVV 90
>pdb|3L6V|A Chain A, Crystal Structure Of The Xanthomonas Campestris Gyrase A
C- Terminal Domain
pdb|3L6V|B Chain B, Crystal Structure Of The Xanthomonas Campestris Gyrase A
C- Terminal Domain
Length = 370
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 118 EDDIKDYLTSQGVEWEESAD--LMEVASKCDVVYQTRIQRERFGERTDLYEEAR 169
ED+++D + VE + A+ +++VA DV Y +G+RT L E R
Sbjct: 215 EDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPR 268
>pdb|3B8P|A Chain A, Fragment Of Wzzb, Polysaccharide Co-Polymerase From
Salmonella Typhimurium
pdb|3B8P|B Chain B, Fragment Of Wzzb, Polysaccharide Co-Polymerase From
Salmonella Typhimurium
pdb|3B8P|C Chain C, Fragment Of Wzzb, Polysaccharide Co-Polymerase From
Salmonella Typhimurium
pdb|3B8P|D Chain D, Fragment Of Wzzb, Polysaccharide Co-Polymerase From
Salmonella Typhimurium
pdb|3B8P|E Chain E, Fragment Of Wzzb, Polysaccharide Co-Polymerase From
Salmonella Typhimurium
Length = 243
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 17 APRVINCKKELMFSYSSLVDKLPVHRNSFSLSADFSKSRLLLSHEKSVKWKQTQQLPLRN 76
AP++ + + +SS L S D K R L+ E+SVK Q LPL
Sbjct: 34 APKISEVQANFISRFSSAFSAL-------SEVLDNQKEREKLTIEQSVKG---QALPLSV 83
Query: 77 SIQCWAVETQSTPSFTIGKKFQLDDVIEAQQFDRDILNAIFEDDIKDYLTSQGVEWEESA 136
S E G + +L + I QQ D ++ + E D+KD +T Q +ES
Sbjct: 84 SYVSTTAE---------GAQRRLAEYI--QQVDEEVAKEL-EVDLKDNITLQTKTLQESL 131
Query: 137 DLMEVASK 144
+ EV ++
Sbjct: 132 ETQEVVAQ 139
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 35 VDKLPVHRNSFSLSADFSKSRLLLSHEKSVKWKQTQQLPLRNSIQCWAVETQSTPSFTIG 94
+D L V R L DF K+R S+ ++ K+ + +P C + + S+T G
Sbjct: 362 LDGLKVVRTGLHL-GDFKKNRFEPSYALALATKKIENIP------CLPITQKEWQSYTAG 414
Query: 95 KKFQLDD 101
+ FQ D
Sbjct: 415 ETFQRDG 421
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,235,652
Number of Sequences: 62578
Number of extensions: 232740
Number of successful extensions: 606
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 42
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)