Query 026861
Match_columns 232
No_of_seqs 134 out of 1265
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 13:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02527 aspartate carbamoyltr 100.0 1.4E-35 3.1E-40 270.8 13.1 133 99-232 166-306 (306)
2 COG0078 ArgF Ornithine carbamo 100.0 5.9E-36 1.3E-40 272.8 9.0 148 82-230 141-310 (310)
3 TIGR00670 asp_carb_tr aspartat 100.0 5.6E-35 1.2E-39 266.5 13.4 127 102-230 169-301 (301)
4 PF00185 OTCace: Aspartate/orn 100.0 6.9E-35 1.5E-39 243.0 11.0 137 90-228 5-158 (158)
5 PRK14805 ornithine carbamoyltr 100.0 4.9E-33 1.1E-37 253.9 12.7 126 102-230 164-301 (302)
6 PRK13814 pyrB aspartate carbam 100.0 2.5E-33 5.4E-38 256.8 10.7 128 102-231 176-305 (310)
7 PLN02342 ornithine carbamoyltr 100.0 5.5E-33 1.2E-37 258.1 12.8 129 102-231 211-348 (348)
8 PRK00856 pyrB aspartate carbam 100.0 7.9E-33 1.7E-37 252.8 11.5 126 102-232 175-304 (305)
9 PRK04284 ornithine carbamoyltr 100.0 2.3E-32 5E-37 252.4 12.4 145 85-230 153-331 (332)
10 TIGR00658 orni_carb_tr ornithi 100.0 3.4E-32 7.4E-37 248.2 13.2 128 102-230 165-304 (304)
11 PRK02255 putrescine carbamoylt 100.0 3.5E-32 7.6E-37 251.7 12.4 147 85-232 152-314 (338)
12 PRK03515 ornithine carbamoyltr 100.0 4.7E-32 1E-36 250.8 12.9 146 85-231 154-334 (336)
13 PRK04523 N-acetylornithine car 100.0 5.6E-32 1.2E-36 250.1 13.2 130 99-230 188-334 (335)
14 PRK12562 ornithine carbamoyltr 100.0 8.3E-32 1.8E-36 249.0 12.7 144 86-230 155-333 (334)
15 PRK01713 ornithine carbamoyltr 100.0 1.2E-31 2.6E-36 247.7 12.9 144 85-229 154-333 (334)
16 PRK00779 ornithine carbamoyltr 100.0 1.4E-31 2.9E-36 244.4 12.7 127 102-229 169-304 (304)
17 PRK02102 ornithine carbamoyltr 100.0 4E-31 8.7E-36 244.2 12.8 128 102-230 173-330 (331)
18 PRK08192 aspartate carbamoyltr 100.0 5.6E-31 1.2E-35 243.7 13.0 145 85-231 157-318 (338)
19 PRK14804 ornithine carbamoyltr 100.0 3.2E-31 6.9E-36 242.7 10.8 126 102-231 170-311 (311)
20 PRK11891 aspartate carbamoyltr 100.0 1.1E-30 2.3E-35 248.5 12.6 143 86-231 240-399 (429)
21 PRK07200 aspartate/ornithine c 100.0 3.1E-30 6.8E-35 243.2 11.6 127 100-227 208-373 (395)
22 TIGR03316 ygeW probable carbam 100.0 4.9E-30 1.1E-34 239.1 11.6 127 100-227 191-356 (357)
23 KOG1504 Ornithine carbamoyltra 100.0 5.9E-30 1.3E-34 230.0 8.9 137 93-230 196-345 (346)
24 COG0540 PyrB Aspartate carbamo 100.0 6.8E-30 1.5E-34 233.6 9.0 158 71-231 109-313 (316)
25 PRK13376 pyrB bifunctional asp 99.9 1.3E-27 2.7E-32 232.1 13.2 146 85-231 172-335 (525)
26 PF02423 OCD_Mu_crystall: Orni 84.2 2.2 4.8E-05 39.3 5.6 64 93-156 134-204 (313)
27 PRK06407 ornithine cyclodeamin 81.2 4.3 9.4E-05 37.3 6.2 64 92-155 122-193 (301)
28 PRK06823 ornithine cyclodeamin 80.8 4.3 9.3E-05 37.6 6.2 62 93-154 134-202 (315)
29 PRK07589 ornithine cyclodeamin 80.8 4.1 8.8E-05 38.5 6.0 62 92-153 134-202 (346)
30 cd05212 NAD_bind_m-THF_DH_Cycl 77.6 6.7 0.00015 32.4 5.7 52 101-152 17-79 (140)
31 COG2423 Predicted ornithine cy 76.4 5.1 0.00011 37.8 5.2 62 94-155 137-206 (330)
32 PF02056 Glyco_hydro_4: Family 71.4 5.6 0.00012 34.5 3.9 30 123-152 50-81 (183)
33 TIGR02371 ala_DH_arch alanine 69.7 11 0.00023 35.0 5.7 60 94-153 135-201 (325)
34 PF00670 AdoHcyase_NAD: S-aden 68.7 21 0.00046 30.5 6.8 75 106-200 43-118 (162)
35 cd05197 GH4_glycoside_hydrolas 67.2 7.4 0.00016 37.7 4.2 30 123-152 51-82 (425)
36 COG0565 LasT rRNA methylase [T 67.2 8.8 0.00019 35.0 4.4 50 104-153 24-81 (242)
37 PRK06199 ornithine cyclodeamin 63.8 20 0.00043 34.2 6.3 61 93-153 161-232 (379)
38 PLN02828 formyltetrahydrofolat 63.1 42 0.00091 30.9 8.0 89 88-193 73-181 (268)
39 COG0111 SerA Phosphoglycerate 62.5 14 0.0003 34.6 4.9 49 134-195 187-235 (324)
40 TIGR02992 ectoine_eutC ectoine 60.2 24 0.00052 32.6 6.1 66 89-154 131-204 (326)
41 COG1486 CelF Alpha-galactosida 60.0 12 0.00025 37.0 4.1 30 123-152 54-85 (442)
42 cd05296 GH4_P_beta_glucosidase 59.8 12 0.00027 36.1 4.2 30 123-152 52-83 (419)
43 PF02826 2-Hacid_dh_C: D-isome 58.8 26 0.00057 29.2 5.6 85 94-195 43-129 (178)
44 TIGR00460 fmt methionyl-tRNA f 57.5 38 0.00082 31.2 6.8 56 121-193 48-110 (313)
45 cd05298 GH4_GlvA_pagL_like Gly 55.1 12 0.00027 36.4 3.4 30 123-152 51-82 (437)
46 PRK06141 ornithine cyclodeamin 54.8 35 0.00076 31.3 6.2 67 87-153 125-198 (314)
47 PRK08306 dipicolinate synthase 54.5 20 0.00042 32.8 4.4 95 91-193 7-103 (296)
48 PRK14804 ornithine carbamoyltr 53.4 16 0.00034 34.0 3.7 50 85-135 117-183 (311)
49 PRK05647 purN phosphoribosylgl 52.3 41 0.00089 29.2 5.9 88 88-193 4-112 (200)
50 TIGR00670 asp_carb_tr aspartat 51.0 16 0.00035 33.8 3.3 50 86-135 116-182 (301)
51 KOG1370 S-adenosylhomocysteine 50.2 31 0.00067 33.3 5.0 55 136-206 261-315 (434)
52 cd00650 LDH_MDH_like NAD-depen 49.9 38 0.00082 30.0 5.4 24 129-152 55-78 (263)
53 PRK08618 ornithine cyclodeamin 48.8 52 0.0011 30.3 6.3 65 89-153 129-201 (325)
54 PRK14188 bifunctional 5,10-met 48.5 30 0.00064 32.2 4.6 69 84-152 118-209 (296)
55 TIGR00561 pntA NAD(P) transhyd 47.2 1.1E+02 0.0023 30.8 8.5 87 90-188 167-280 (511)
56 PRK07340 ornithine cyclodeamin 46.9 51 0.0011 30.2 5.9 66 88-154 126-198 (304)
57 PRK00856 pyrB aspartate carbam 45.8 21 0.00045 33.2 3.2 48 86-135 122-188 (305)
58 PF01262 AlaDh_PNT_C: Alanine 45.2 58 0.0013 26.9 5.5 96 79-188 12-135 (168)
59 PRK08306 dipicolinate synthase 44.5 67 0.0015 29.3 6.3 65 87-152 152-218 (296)
60 PRK08291 ectoine utilization p 43.9 64 0.0014 29.8 6.1 65 90-154 135-207 (330)
61 PRK15409 bifunctional glyoxyla 43.1 42 0.00092 31.2 4.8 17 136-152 192-208 (323)
62 TIGR00639 PurN phosphoribosylg 41.6 1.1E+02 0.0023 26.5 6.7 88 88-192 3-110 (190)
63 PRK00005 fmt methionyl-tRNA fo 40.8 56 0.0012 30.0 5.2 57 120-193 47-110 (309)
64 PRK02102 ornithine carbamoyltr 39.5 29 0.00064 32.7 3.2 33 86-121 122-164 (331)
65 PF00056 Ldh_1_N: lactate/mala 38.9 55 0.0012 26.5 4.4 27 126-152 51-77 (141)
66 PLN02494 adenosylhomocysteinas 38.1 86 0.0019 31.3 6.3 49 137-201 302-350 (477)
67 PF01210 NAD_Gly3P_dh_N: NAD-d 37.9 35 0.00075 27.9 3.0 24 131-154 56-79 (157)
68 PRK14189 bifunctional 5,10-met 35.7 75 0.0016 29.5 5.2 101 52-152 74-209 (285)
69 PRK00961 H(2)-dependent methyl 35.7 1.2E+02 0.0026 28.8 6.5 60 89-152 71-149 (342)
70 PRK06988 putative formyltransf 35.0 1.1E+02 0.0024 28.2 6.2 57 120-193 46-109 (312)
71 COG0499 SAM1 S-adenosylhomocys 34.7 1.9E+02 0.0041 28.5 7.8 48 138-201 258-305 (420)
72 TIGR02853 spore_dpaA dipicolin 34.5 51 0.0011 30.1 3.8 90 91-187 6-95 (287)
73 PLN02527 aspartate carbamoyltr 34.0 19 0.00042 33.3 1.0 36 86-121 117-160 (306)
74 TIGR01327 PGDH D-3-phosphoglyc 33.3 88 0.0019 31.0 5.5 45 105-152 157-201 (525)
75 PLN02342 ornithine carbamoyltr 33.3 43 0.00093 31.9 3.2 34 86-121 161-203 (348)
76 PRK14194 bifunctional 5,10-met 33.1 86 0.0019 29.4 5.1 83 70-152 97-210 (301)
77 PLN03139 formate dehydrogenase 33.1 61 0.0013 31.2 4.3 45 135-191 246-290 (386)
78 PRK04148 hypothetical protein; 32.9 1.2E+02 0.0025 25.2 5.3 65 90-156 20-89 (134)
79 COG1004 Ugd Predicted UDP-gluc 32.4 54 0.0012 32.2 3.7 35 118-152 48-84 (414)
80 PRK10433 putative RNA methyltr 31.7 67 0.0014 28.7 4.0 52 102-153 20-79 (228)
81 PRK14179 bifunctional 5,10-met 31.1 91 0.002 28.9 4.9 83 70-152 96-209 (284)
82 PRK11891 aspartate carbamoyltr 31.1 40 0.00088 33.0 2.7 36 86-121 203-250 (429)
83 PF02882 THF_DHG_CYH_C: Tetrah 31.1 1.5E+02 0.0033 25.0 5.9 54 101-154 25-89 (160)
84 PTZ00075 Adenosylhomocysteinas 29.9 1.3E+02 0.0028 30.1 6.0 16 137-152 302-317 (476)
85 PRK08410 2-hydroxyacid dehydro 28.8 1.7E+02 0.0036 27.0 6.2 17 136-152 188-204 (311)
86 PF01488 Shikimate_DH: Shikima 28.5 1.7E+02 0.0036 23.3 5.5 99 84-197 9-115 (135)
87 cd05297 GH4_alpha_glucosidase_ 28.4 93 0.002 29.9 4.7 23 130-152 60-82 (423)
88 cd05565 PTS_IIB_lactose PTS_II 28.2 84 0.0018 24.5 3.6 37 117-153 16-56 (99)
89 PRK14175 bifunctional 5,10-met 28.1 1.3E+02 0.0028 28.0 5.3 83 70-152 96-209 (286)
90 PF03807 F420_oxidored: NADP o 28.0 80 0.0017 22.9 3.3 35 118-153 36-70 (96)
91 PLN02928 oxidoreductase family 27.8 1.7E+02 0.0038 27.4 6.3 45 136-192 218-262 (347)
92 PF03720 UDPG_MGDP_dh_C: UDP-g 27.7 64 0.0014 24.7 2.8 25 131-155 53-77 (106)
93 PF10087 DUF2325: Uncharacteri 27.7 1.2E+02 0.0026 22.8 4.3 34 119-152 13-56 (97)
94 PRK14177 bifunctional 5,10-met 27.6 1.1E+02 0.0024 28.5 4.8 83 70-152 97-210 (284)
95 PF05222 AlaDh_PNT_N: Alanine 27.6 1.5E+02 0.0031 24.2 5.1 26 126-153 48-73 (136)
96 TIGR01723 hmd_TIGR 5,10-methen 27.5 1.7E+02 0.0038 27.8 6.1 54 95-152 75-147 (340)
97 PRK14169 bifunctional 5,10-met 27.0 1.2E+02 0.0026 28.1 5.0 83 70-152 94-207 (282)
98 TIGR00518 alaDH alanine dehydr 26.7 3.8E+02 0.0082 25.3 8.4 92 85-189 165-264 (370)
99 COG4074 Mth H2-forming N5,N10- 26.2 29 0.00062 32.1 0.7 20 131-150 126-145 (343)
100 PRK06487 glycerate dehydrogena 26.2 2E+02 0.0044 26.5 6.3 30 123-152 165-205 (317)
101 PRK13243 glyoxylate reductase; 25.6 1.2E+02 0.0027 28.1 4.8 43 106-152 170-212 (333)
102 PRK06046 alanine dehydrogenase 25.6 1.9E+02 0.0041 26.7 6.0 61 93-154 135-203 (326)
103 PRK15114 tRNA (cytidine/uridin 25.4 90 0.002 28.0 3.7 52 102-153 22-81 (245)
104 PRK13581 D-3-phosphoglycerate 25.3 1.4E+02 0.0031 29.5 5.5 44 105-152 159-202 (526)
105 PRK06932 glycerate dehydrogena 24.7 2.3E+02 0.005 26.1 6.4 17 136-152 189-205 (314)
106 PRK14170 bifunctional 5,10-met 24.6 1.5E+02 0.0033 27.5 5.1 92 83-193 116-230 (284)
107 PRK15076 alpha-galactosidase; 24.5 75 0.0016 30.8 3.3 23 130-152 61-83 (431)
108 PRK14190 bifunctional 5,10-met 24.0 1.2E+02 0.0027 28.1 4.4 105 70-193 96-231 (284)
109 TIGR00050 rRNA_methyl_1 RNA me 23.9 1.1E+02 0.0024 27.1 4.0 51 102-152 21-79 (233)
110 TIGR00936 ahcY adenosylhomocys 23.5 1.6E+02 0.0034 28.7 5.3 16 137-152 243-258 (406)
111 PRK08605 D-lactate dehydrogena 23.1 1.1E+02 0.0025 28.3 4.1 47 134-192 190-236 (332)
112 COG1052 LdhA Lactate dehydroge 23.1 1.2E+02 0.0026 28.4 4.3 72 104-191 164-235 (324)
113 PLN02285 methionyl-tRNA formyl 23.1 1.1E+02 0.0025 28.6 4.1 55 121-192 60-124 (334)
114 PRK14192 bifunctional 5,10-met 22.4 2.2E+02 0.0048 26.1 5.7 73 80-152 115-210 (283)
115 PRK15469 ghrA bifunctional gly 22.0 1.7E+02 0.0037 27.1 5.0 17 136-152 182-198 (312)
116 cd00401 AdoHcyase S-adenosyl-L 21.8 2.2E+02 0.0048 27.7 5.9 47 102-152 218-265 (413)
117 PRK08125 bifunctional UDP-gluc 21.7 2.3E+02 0.005 28.6 6.2 57 120-193 44-107 (660)
118 COG1064 AdhP Zn-dependent alco 21.3 1.7E+02 0.0037 27.9 4.9 58 96-153 177-238 (339)
119 PRK07574 formate dehydrogenase 21.0 1.5E+02 0.0033 28.4 4.6 19 134-152 238-256 (385)
120 PRK14193 bifunctional 5,10-met 21.0 1.8E+02 0.0039 27.0 4.9 115 70-203 96-246 (284)
121 PRK08192 aspartate carbamoyltr 20.8 49 0.0011 31.2 1.2 36 86-121 121-168 (338)
122 COG0373 HemA Glutamyl-tRNA red 20.6 1.5E+02 0.0032 29.1 4.4 60 123-197 217-280 (414)
123 PRK14173 bifunctional 5,10-met 20.4 1.8E+02 0.004 27.0 4.8 83 70-152 93-206 (287)
124 PRK14176 bifunctional 5,10-met 20.4 1.9E+02 0.0042 26.9 5.0 100 52-151 80-214 (287)
125 PRK05282 (alpha)-aspartyl dipe 20.1 3.4E+02 0.0074 24.3 6.3 30 123-152 55-87 (233)
No 1
>PLN02527 aspartate carbamoyltransferase
Probab=100.00 E-value=1.4e-35 Score=270.84 Aligned_cols=133 Identities=73% Similarity=1.167 Sum_probs=118.4
Q ss_pred HHHHHHH-hcC-CcccccccchHhH------HHHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhc
Q 026861 99 LDDVIEA-QQF-DRDILNAIFEDDI------KDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARG 170 (232)
Q Consensus 99 ~~~li~A-~~~-~~~~l~v~~p~di------~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~ 170 (232)
+++++.+ ..| |++ ++++.|+++ .+.+++.|.++++++|++||+++||||||++||.||+++..+++.+++.
T Consensus 166 ~~Sl~~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~ 244 (306)
T PLN02527 166 VRSLAYLLAKYEDVK-IYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQRERFGERIDLYEAARG 244 (306)
T ss_pred HHHHHHHHHhcCCCE-EEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcchhhhcchHHHHHHhCC
Confidence 4465544 666 886 999999765 4566778999999999999999999999999998887654455777778
Q ss_pred CCccCHHHHhhcCCCcEEeCCCCCCccccccccCCCCchHHHHHhhCHHHHHHHHHHHhcCC
Q 026861 171 KYIVDQNVLQVMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVGW 232 (232)
Q Consensus 171 ~Y~Vt~elL~~ak~daivMHpLPRg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg~~ 232 (232)
+|+||.++|+.++++++||||||||.||+++|+++|+|+||+||+||+|+|||||.+++|+|
T Consensus 245 ~y~v~~~ll~~a~~~~ivmHclPRg~Ei~~~V~d~p~s~i~~QaeNrl~~~~All~~ll~~~ 306 (306)
T PLN02527 245 KYIVDKKVMDVLPKHAVVMHPLPRLDEITTDVDSDPRAAYFRQAKNGLFIRMALLKLLLGGW 306 (306)
T ss_pred CceECHHHHhccCCCCEEECCCCCcccccHHHhCCCcchHHHHHhcCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999
No 2
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-36 Score=272.78 Aligned_cols=148 Identities=20% Similarity=0.230 Sum_probs=124.0
Q ss_pred ceeeccccccccCCcccH--------HH-HHHHhcCCcccccccchHhH------H----HHHHhCCCEEEEEcCHHHhh
Q 026861 82 AVETQSTPSFTIGKKFQL--------DD-VIEAQQFDRDILNAIFEDDI------K----DYLTSQGVEWEESADLMEVA 142 (232)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~--------~~-li~A~~~~~~~l~v~~p~di------~----e~l~~~G~~i~~~~dleEAl 142 (232)
.++|.+-+.=..|.|+.+ ++ |+.|+.||++ +++++|+++ . +.++++|+++++++|++||+
T Consensus 141 l~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~d-v~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv 219 (310)
T COG0078 141 LMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMD-VRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAV 219 (310)
T ss_pred HHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCe-EEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHh
Confidence 345555444344555544 23 7888999998 999999766 1 34567899999999999999
Q ss_pred ccCCEEEEccccccccCCCchH-HHHhhcCCccCHHHHhhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhCHH
Q 026861 143 SKCDVVYQTRIQRERFGERTDL-YEEARGKYIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLY 219 (232)
Q Consensus 143 ~~ADVVYtdrwq~Er~~~~~~~-~~~~~~~Y~Vt~elL~~ak~daivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~ 219 (232)
++|||||||+|.+|+++.+..+ +.....+||||+++|+.++++++|||||| ||.||++||+++|+|++|+|||||+|
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~EVTdeV~dg~~svvfdeAENRlH 299 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEGPASVVFDEAENRLH 299 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCCCCCCCCccCHHHhCCCceeeeehhhhhHH
Confidence 9999999999999998765433 44455559999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 026861 220 IRMALLKLLLV 230 (232)
Q Consensus 220 vRmALL~~lLg 230 (232)
+|||||.++++
T Consensus 300 ~qKAvl~~~l~ 310 (310)
T COG0078 300 TQKAVLAALLG 310 (310)
T ss_pred HHHHHHHHhhC
Confidence 99999999985
No 3
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=100.00 E-value=5.6e-35 Score=266.50 Aligned_cols=127 Identities=39% Similarity=0.665 Sum_probs=115.8
Q ss_pred HHHHhcCCcccccccchHhH------HHHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccC
Q 026861 102 VIEAQQFDRDILNAIFEDDI------KDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVD 175 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di------~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt 175 (232)
+..++.||++ ++++.|+++ .+.+++.|+++++++|+++|+++||||||++||.||+++ .+++.+++.+|+||
T Consensus 169 ~~~~a~~g~~-v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~~er~~~-~~~~~~~~~~y~v~ 246 (301)
T TIGR00670 169 AEALTRFGVE-VYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQKERFPD-PEEYEKYKGSYGIT 246 (301)
T ss_pred HHHHHHcCCE-EEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCccccccCC-HHHHHHHhcCCeEC
Confidence 6667899997 999999876 345567899999999999999999999999999888764 35677899999999
Q ss_pred HHHHhhcCCCcEEeCCCCCCccccccccCCCCchHHHHHhhCHHHHHHHHHHHhc
Q 026861 176 QNVLQVMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 176 ~elL~~ak~daivMHpLPRg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg 230 (232)
.++|+.++++++||||||||.||+++|+++|+|+||+||+||+|+|||||.+++|
T Consensus 247 ~ell~~a~~~ai~mHclPRg~Ev~~~V~d~p~s~i~~QaeNrl~~~~AvL~~ll~ 301 (301)
T TIGR00670 247 LERLEAAKKGVIIMHPLPRVDEIDPSVDDTPHAKYFKQAFNGVPVRMALLSLLLG 301 (301)
T ss_pred HHHHhhcCCCCEEECCCCCCcccCHHHhCCccchHHHHHhccHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999875
No 4
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=100.00 E-value=6.9e-35 Score=242.98 Aligned_cols=137 Identities=30% Similarity=0.424 Sum_probs=113.5
Q ss_pred ccccCCc--ccHHH-HHHHhcCCcccccccchHhH--H----------HHHHhCCCEEEEEcCHHHhhccCCEEEEcccc
Q 026861 90 SFTIGKK--FQLDD-VIEAQQFDRDILNAIFEDDI--K----------DYLTSQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 90 ~~~~g~~--~~~~~-li~A~~~~~~~l~v~~p~di--~----------e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq 154 (232)
+.=.||+ +-+|+ ++.+++||.+ ++++.|+++ . +++.++|.++++++|++|++++||||||++||
T Consensus 5 i~~vGD~~~rv~~Sl~~~~~~~g~~-~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 5 IAYVGDGHNRVAHSLIELLAKFGME-VVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTDRWQ 83 (158)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTSE-EEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEESSS
T ss_pred EEEECCCCChHHHHHHHHHHHcCCE-EEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEcCcc
Confidence 3445773 56677 5677999998 999999873 1 34456799999999999999999999999999
Q ss_pred ccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhCHHHHHHHHHHH
Q 026861 155 RERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228 (232)
Q Consensus 155 ~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~l 228 (232)
++++.++.+.+ +.+.+|+||.++|+.+++|++|||||| ||.||+++|+++|+++||+||+||+|+|||||++|
T Consensus 84 s~~~~e~~~~~-~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~eV~~~~~s~~~~Qa~N~l~vrmAll~~l 158 (158)
T PF00185_consen 84 SMGDKERFKRL-EKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDEVDDSPRSVYFEQAENRLHVRMALLALL 158 (158)
T ss_dssp CTTSGGHHHHH-HHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHHHHTSTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHH-HHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHhHhCCcccHHHHHHHhHHHHHHHHHHhC
Confidence 77663322334 444559999999999999999999999 99999999999999999999999999999999875
No 5
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=4.9e-33 Score=253.88 Aligned_cols=126 Identities=19% Similarity=0.190 Sum_probs=111.4
Q ss_pred HHHHhcCCcccccccchHhHH----------HHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcC
Q 026861 102 VIEAQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGK 171 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di~----------e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~ 171 (232)
+..++.||++ ++++.|+++. ++++..|+++++++|. +|+++|||||||+|++++.+...+++.+++.+
T Consensus 164 ~~~~~~~g~~-v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~ 241 (302)
T PRK14805 164 MYGAAILGAT-MTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDTWISMGDDTPLAEIKAKFAP 241 (302)
T ss_pred HHHHHHcCCE-EEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeeceEeCCCccccHHHHHhccC
Confidence 5666888997 9999997661 2345689999999995 78999999999999998765445667789999
Q ss_pred CccCHHHHhhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhCHHHHHHHHHHHhc
Q 026861 172 YIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 172 Y~Vt~elL~~ak~daivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg 230 (232)
|+||.++|+.++++ +|||||| ||+||+++|+++|+|+||+||+||+|+|||||.++++
T Consensus 242 y~vt~~~l~~a~~~-~vmH~lP~~Rg~Ei~~~V~d~p~s~i~~QaeN~l~vr~All~~~l~ 301 (302)
T PRK14805 242 YQVNKALMEKAGAT-FVMHCQPAHRGVEITSEVMDGEGSLILQQAENRMHAQNAVLVTLLS 301 (302)
T ss_pred CcCCHHHHhcCCCC-eEECCCCCCCCCeeCHHHhCCCcChHHHHHhccHHHHHHHHHHHhc
Confidence 99999999999887 9999999 9999999999999999999999999999999999986
No 6
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=100.00 E-value=2.5e-33 Score=256.77 Aligned_cols=128 Identities=23% Similarity=0.315 Sum_probs=107.6
Q ss_pred HHHHhcCCcccccccchHhHHHHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhh
Q 026861 102 VIEAQQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQV 181 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ 181 (232)
+..++.||...++++.|+++.-. ...+.++++++|++||+++||||||++||.||++.. ..+.++..+|+||.++|+.
T Consensus 176 ~~~~a~~g~~~v~~~~P~~~~p~-~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~~-~~~~~~~~~y~v~~~~l~~ 253 (310)
T PRK13814 176 MDGLVTMGVPEIRLVGPSSLLPD-KVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDNS-VDIDAFRGSFRLTPEKLYS 253 (310)
T ss_pred HHHHHHcCCCEEEEeCCcccCcC-ccccceEEEEcCHHHHhCCCCEEEECccccccccch-hHHHHhCCCcccCHHHHHh
Confidence 56667888723888888876210 122347889999999999999999999999887542 3444555569999999999
Q ss_pred cCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhCHHHHHHHHHHHhcC
Q 026861 182 MEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 182 ak~daivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg~ 231 (232)
+++|++|||||| ||+||+++|+++|+|+||+||+||+|+|||||.+++|+
T Consensus 254 a~~~~i~mHcLP~~Rg~Ei~~~V~d~p~s~if~QaeNrl~~r~AlL~~~l~~ 305 (310)
T PRK13814 254 AKPDAIVMHPGPVNREVEINSDVADNQQSVILQQVRNGVAMRMAVLELFLLR 305 (310)
T ss_pred cCCCCEEECCCCCCCCCeeCHHHhCCCcchHHHHHhccHHHHHHHHHHHHhh
Confidence 999999999999 89999999999999999999999999999999999984
No 7
>PLN02342 ornithine carbamoyltransferase
Probab=100.00 E-value=5.5e-33 Score=258.14 Aligned_cols=129 Identities=21% Similarity=0.230 Sum_probs=114.6
Q ss_pred HHHHhcCCcccccccchHhH------HHHHHhCCC-EEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCcc
Q 026861 102 VIEAQQFDRDILNAIFEDDI------KDYLTSQGV-EWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIV 174 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di------~e~l~~~G~-~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~V 174 (232)
+..+..||++ ++++.|+++ .+.++..|. ++++++|++||+++|||||||+|+++++.++.+++.+++.+|+|
T Consensus 211 i~~~~~~G~~-v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~v 289 (348)
T PLN02342 211 LLLAAVLPFH-FVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQV 289 (348)
T ss_pred HHHHHHcCCE-EEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCcc
Confidence 6666889987 999999766 244555674 89999999999999999999999998876555566688999999
Q ss_pred CHHHHhhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhCHHHHHHHHHHHhcC
Q 026861 175 DQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 175 t~elL~~ak~daivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg~ 231 (232)
|.++|+.+++|++|||||| ||+||+++|+++|+|+||+||+||+|+|||||++++|+
T Consensus 290 t~ell~~ak~~aivMHpLP~~rg~EIs~eV~d~p~s~if~QaeNrl~vrmAlL~~llg~ 348 (348)
T PLN02342 290 NEALMKLAGPQAYFMHCLPAERGVEVTDGVMEAPNSIVFPQAENRMHAQNAIMLHQLGK 348 (348)
T ss_pred CHHHHhccCCCcEEeCCCCcCCCceecHHHhCCcccHHHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999999999 78999999999999999999999999999999999874
No 8
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=100.00 E-value=7.9e-33 Score=252.80 Aligned_cols=126 Identities=33% Similarity=0.483 Sum_probs=110.0
Q ss_pred HHHHhcCCcccccccchHhHH-HHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCC-chHHHHhhcCCccCHHHH
Q 026861 102 VIEAQQFDRDILNAIFEDDIK-DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGER-TDLYEEARGKYIVDQNVL 179 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di~-e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~-~~~~~~~~~~Y~Vt~elL 179 (232)
+..++.||++ ++++.|+++. +.+ ..+++++|++||+++||||||++||.||++++ .+++.+++.+|+||.++|
T Consensus 175 ~~~~~~~g~~-~~~~~P~~~~~~~~----~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll 249 (305)
T PRK00856 175 IQALTRLGAE-VRLIAPPTLLPEGM----PEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERL 249 (305)
T ss_pred HHHHHHcCCE-EEEECCcccCcccc----cceEEECCHHHHhCCCCEEEECCcccccccccchHHHHHHhccCccCHHHH
Confidence 5566788886 8888888762 111 12478999999999999999999999987543 256778899999999999
Q ss_pred hhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhCHHHHHHHHHHHhcCC
Q 026861 180 QVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVGW 232 (232)
Q Consensus 180 ~~ak~daivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg~~ 232 (232)
+.++++++|||||| ||.||+++|+++|+|+||+||+||+|+|||||.+++++|
T Consensus 250 ~~a~~~~~~mHcLPa~Rg~Ev~~~V~d~p~s~~f~QAeNrl~~~~All~~~l~~~ 304 (305)
T PRK00856 250 ALAKPDAIVMHPGPVNRGVEIASDVADGPQSVIFEQVTNGVAVRMAVLELLLGGR 304 (305)
T ss_pred hhcCCCCEEECCCCCCCCCccCHHHhCCCcchHHHHHhcCHHHHHHHHHHHhcCC
Confidence 99999999999999 999999999999999999999999999999999999987
No 9
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=99.98 E-value=2.3e-32 Score=252.35 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=122.9
Q ss_pred eccccccccCCc--ccHHH-HHHHhcCCcccccccchHhH------H----HHHHhCCCEEEEEcCHHHhhccCCEEEEc
Q 026861 85 TQSTPSFTIGKK--FQLDD-VIEAQQFDRDILNAIFEDDI------K----DYLTSQGVEWEESADLMEVASKCDVVYQT 151 (232)
Q Consensus 85 ~~~~~~~~~g~~--~~~~~-li~A~~~~~~~l~v~~p~di------~----e~l~~~G~~i~~~~dleEAl~~ADVVYtd 151 (232)
++++.+-=.||+ ..+++ +..++.||++ ++++.|+++ . ++++..|+++++++|++||+++||||||+
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMD-FHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCE-EEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 455555556775 45666 5556888997 999999754 2 34456899999999999999999999999
Q ss_pred cccccccCCC-chHHHHhhcCCccCHHHHhhcC-CCcEEeCCCC-------------------CCccccccccCCCCchH
Q 026861 152 RIQRERFGER-TDLYEEARGKYIVDQNVLQVME-KHAVVLHPLP-------------------RLDEITVDVDADPRAAY 210 (232)
Q Consensus 152 rwq~Er~~~~-~~~~~~~~~~Y~Vt~elL~~ak-~daivMHpLP-------------------Rg~EIt~eV~d~p~S~i 210 (232)
+|++|+++.+ .+++.+++.+|+||+++|+.++ ++++|||||| ||+||+++|+++|+|+|
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP~~r~~e~~~~~~~~~~~~~rg~Ei~~~V~d~~~S~i 311 (332)
T PRK04284 232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLPSFHDLDTKVGKEIFEKYGLKEMEVTDEVFESKASVV 311 (332)
T ss_pred CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCCCCCCcccchhhhhhhhcCCCCcEEcHHHhCCccchH
Confidence 9999987654 3566789999999999999996 6999999999 47889999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHhc
Q 026861 211 FRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 211 f~QAeNrl~vRmALL~~lLg 230 (232)
|+||+||+|+|||||.+++|
T Consensus 312 ~~QaeNrl~~~kAvl~~~~~ 331 (332)
T PRK04284 312 FDEAENRMHTIKAVMVATLG 331 (332)
T ss_pred HHHHhhhHHHHHHHHHHHhc
Confidence 99999999999999999986
No 10
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=99.98 E-value=3.4e-32 Score=248.18 Aligned_cols=128 Identities=20% Similarity=0.288 Sum_probs=113.6
Q ss_pred HHHHhcCCcccccccchHhHH------H----HHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcC
Q 026861 102 VIEAQQFDRDILNAIFEDDIK------D----YLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGK 171 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di~------e----~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~ 171 (232)
+..+..||.+ ++++.|+++. + ++++.|+++++++|+++|+++|||||+++|++++.+...+++.+++.+
T Consensus 165 ~~~l~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~ 243 (304)
T TIGR00658 165 MLAGAKLGMD-VVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRP 243 (304)
T ss_pred HHHHHHcCCE-EEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcC
Confidence 5666889986 9999987662 2 235689999999999999999999999999988765444677889999
Q ss_pred CccCHHHHhhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhCHHHHHHHHHHHhc
Q 026861 172 YIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 172 Y~Vt~elL~~ak~daivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg 230 (232)
|+||+++|+.+++|++|||||| ||+||+++|+++|+|+||+||+||+|+|||||.+++|
T Consensus 244 y~l~~~~l~~~~~~~ivmHplP~~rg~Ei~~~V~d~p~s~~~~Qa~n~~~vr~AlL~~~l~ 304 (304)
T TIGR00658 244 YQVNEELMELAKPEVIFMHCLPAHRGEEVTDEVIEGPHSIVFDQAENRLHAQKAVMVALLG 304 (304)
T ss_pred CcCCHHHHhhcCCCCEEECCCCCCCCceeCHHHhCCCcchHHHHHhccHHHHHHHHHHHhC
Confidence 9999999999999999999999 7899999999999999999999999999999999886
No 11
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=99.97 E-value=3.5e-32 Score=251.75 Aligned_cols=147 Identities=20% Similarity=0.178 Sum_probs=117.1
Q ss_pred eccccccccCC-cccHHH-HHHHhcCCcccccccchHhH------HHH----HHhCCCEEEEEcCHHHhhccCCEEEEcc
Q 026861 85 TQSTPSFTIGK-KFQLDD-VIEAQQFDRDILNAIFEDDI------KDY----LTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 85 ~~~~~~~~~g~-~~~~~~-li~A~~~~~~~l~v~~p~di------~e~----l~~~G~~i~~~~dleEAl~~ADVVYtdr 152 (232)
++++.+.=+|| +.-+++ +..+..||++ ++++.|+++ .+. +++.|.++++++|++||+++||||||++
T Consensus 152 l~glkv~~vGD~~~v~~Sl~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 152 LEDCKVVFVGDATQVCVSLMFIATKMGMD-FVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCE-EEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 34444445566 333455 5555788886 888888754 222 3457999999999999999999999999
Q ss_pred cc-ccccCCCchHHHHhhc-CCccCHHHHhhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhCHHHHHHHHHHH
Q 026861 153 IQ-RERFGERTDLYEEARG-KYIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228 (232)
Q Consensus 153 wq-~Er~~~~~~~~~~~~~-~Y~Vt~elL~~ak~daivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~l 228 (232)
|+ .++.+...+++.+.+. .|+||.++|+.+++|++|||||| ||.||+++|+++|+|+||+||+||+|+|||||.++
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis~~V~d~p~s~if~Qa~Nrl~vrmAlL~~l 310 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDEVMDSPRSICFDEAENRLTAIRALLVYF 310 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceecHHHhCCccchHHHHHhccHHHHHHHHHHH
Confidence 99 4554322234444444 49999999999999999999999 99999999999999999999999999999999999
Q ss_pred hcCC
Q 026861 229 LVGW 232 (232)
Q Consensus 229 Lg~~ 232 (232)
+++|
T Consensus 311 l~~~ 314 (338)
T PRK02255 311 MNPY 314 (338)
T ss_pred hccc
Confidence 9864
No 12
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=99.97 E-value=4.7e-32 Score=250.79 Aligned_cols=146 Identities=18% Similarity=0.103 Sum_probs=122.0
Q ss_pred eccccccccCCccc--HHH-HHHHhcCCcccccccchHhHH----------HHHHhCCCEEEEEcCHHHhhccCCEEEEc
Q 026861 85 TQSTPSFTIGKKFQ--LDD-VIEAQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADLMEVASKCDVVYQT 151 (232)
Q Consensus 85 ~~~~~~~~~g~~~~--~~~-li~A~~~~~~~l~v~~p~di~----------e~l~~~G~~i~~~~dleEAl~~ADVVYtd 151 (232)
++++.+-=+||+.+ +++ +..++.||++ ++++.|+++. +++++.|+++++++|++||+++|||||||
T Consensus 154 l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 154 FNEMTLAYAGDARNNMGNSLLEAAALTGLD-LRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred cCCCEEEEeCCCcCcHHHHHHHHHHHcCCE-EEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 34444444577533 556 5566788996 9999997761 34556899999999999999999999999
Q ss_pred cccccccCCC-chHHHHhhcCCccCHHHHhhc-CCCcEEeCCCC--------------------CCccccccccCCCCch
Q 026861 152 RIQRERFGER-TDLYEEARGKYIVDQNVLQVM-EKHAVVLHPLP--------------------RLDEITVDVDADPRAA 209 (232)
Q Consensus 152 rwq~Er~~~~-~~~~~~~~~~Y~Vt~elL~~a-k~daivMHpLP--------------------Rg~EIt~eV~d~p~S~ 209 (232)
+|++|+++.+ .+++.+++.+|+||.++|+.+ +++++|||||| ||+||+++|+++|+|+
T Consensus 233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcLP~~~~~~~~~~~~~~~~~~~~rg~EIs~eV~~~p~s~ 312 (336)
T PRK03515 233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLPAFHDDQTTLGKKMAEEYGLHGGMEVTDEVFESAHSI 312 (336)
T ss_pred CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCCCCCCCcccccccchhcccccCCCCEeCHHHhCCCcch
Confidence 9999998543 245567899999999999985 89999999999 3789999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHhcC
Q 026861 210 YFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 210 if~QAeNrl~vRmALL~~lLg~ 231 (232)
||+||+||+|+|||||.+++++
T Consensus 313 if~QaeNrl~~~kAvl~~~l~~ 334 (336)
T PRK03515 313 VFDQAENRLHTIKAVMVATLSK 334 (336)
T ss_pred HHHHHhhhHHHHHHHHHHHhCC
Confidence 9999999999999999999874
No 13
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=99.97 E-value=5.6e-32 Score=250.08 Aligned_cols=130 Identities=21% Similarity=0.265 Sum_probs=112.2
Q ss_pred HHH-HHHHhcCCcccccccch-HhH------H----HHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCC---ch
Q 026861 99 LDD-VIEAQQFDRDILNAIFE-DDI------K----DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGER---TD 163 (232)
Q Consensus 99 ~~~-li~A~~~~~~~l~v~~p-~di------~----e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~---~~ 163 (232)
+++ +..+..||++ ++++.| +++ . +++++.|+++++++|++||+++||||||++||+||+.++ ..
T Consensus 188 ~~S~~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~ 266 (335)
T PRK04523 188 ANSALLIATRLGMD-VTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEK 266 (335)
T ss_pred HHHHHHHHHHcCCE-EEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEeceeeccccCCcccccH
Confidence 445 5556789986 999999 776 2 245678999999999999999999999999999875322 23
Q ss_pred HHHHhhcCCccCHHHHhhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhCHHHHHHHHHHHhc
Q 026861 164 LYEEARGKYIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 164 ~~~~~~~~Y~Vt~elL~~ak~daivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg 230 (232)
++.+++.+|+||+++|+.+ ++++|||||| ||.||+++|+++|+|+||+||+||+|+|||||++++.
T Consensus 267 ~~~~~~~~y~v~~~ll~~a-~~~i~mHcLP~~Rg~Ei~~~V~d~p~s~if~QaeNrl~~r~AlL~~~l~ 334 (335)
T PRK04523 267 PIRDQYQHFIVDERKMALT-NNGVFSHCLPLRRNVKVTDAVMDSPNCIAIDEAENRLHVQKAIMAALAS 334 (335)
T ss_pred HHHHhCcCCcCCHHHHhCC-CCCEEECCCCCCCCCeeCHHHhCCCcchHHHHHhccHHHHHHHHHHHHh
Confidence 4567889999999999987 5899999999 9999999999999999999999999999999999875
No 14
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=99.97 E-value=8.3e-32 Score=249.03 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=119.6
Q ss_pred ccccccccCCc--ccHHH-HHHHhcCCcccccccchHhH------H----HHHHhCCCEEEEEcCHHHhhccCCEEEEcc
Q 026861 86 QSTPSFTIGKK--FQLDD-VIEAQQFDRDILNAIFEDDI------K----DYLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 86 ~~~~~~~~g~~--~~~~~-li~A~~~~~~~l~v~~p~di------~----e~l~~~G~~i~~~~dleEAl~~ADVVYtdr 152 (232)
+++.+-=+||. .-+++ +..++.||.+ ++++.|+++ . +++++.|..+++++|++||+++||||||++
T Consensus 155 ~gl~va~vGD~~~~v~~S~~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 155 NEMTLVYAGDARNNMGNSMLEAAALTGLD-LRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCE-EEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 33444445664 23455 5666888986 999998764 2 334567999999999999999999999999
Q ss_pred ccccccCCC-chHHHHhhcCCccCHHHHhhc-CCCcEEeCCCCC--------------------CccccccccCCCCchH
Q 026861 153 IQRERFGER-TDLYEEARGKYIVDQNVLQVM-EKHAVVLHPLPR--------------------LDEITVDVDADPRAAY 210 (232)
Q Consensus 153 wq~Er~~~~-~~~~~~~~~~Y~Vt~elL~~a-k~daivMHpLPR--------------------g~EIt~eV~d~p~S~i 210 (232)
|++|++.++ ..++.+++.+|+||.++|+.+ ++|++||||||+ |.||+++|+++|+|+|
T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP~~~~~~~~~~~~~~~~~~~~Rg~Eit~eV~d~p~S~i 313 (334)
T PRK12562 234 WVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLGKKMAKEFGLHGGMEVTDEVFESPASIV 313 (334)
T ss_pred ccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCCCCCcccccchhhhhhhccCCCCcEeCHHHhCCCcchH
Confidence 999987433 256668899999999999996 799999999994 8999999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHhc
Q 026861 211 FRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 211 f~QAeNrl~vRmALL~~lLg 230 (232)
|+||+||+|+|||||.+++.
T Consensus 314 f~QaeNrl~~~kAvl~~~~~ 333 (334)
T PRK12562 314 FDQAENRMHTIKAVMVATLA 333 (334)
T ss_pred HHHHhhhHHHHHHHHHHHhc
Confidence 99999999999999999875
No 15
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=99.97 E-value=1.2e-31 Score=247.71 Aligned_cols=144 Identities=16% Similarity=0.120 Sum_probs=120.1
Q ss_pred eccccccccCCccc--HHH-HHHHhcCCcccccccchHhHH----------HHHHhCCCEEEEEcCHHHhhccCCEEEEc
Q 026861 85 TQSTPSFTIGKKFQ--LDD-VIEAQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADLMEVASKCDVVYQT 151 (232)
Q Consensus 85 ~~~~~~~~~g~~~~--~~~-li~A~~~~~~~l~v~~p~di~----------e~l~~~G~~i~~~~dleEAl~~ADVVYtd 151 (232)
++++.+-=.||+.+ +++ +..++.||++ ++++.|+++. +++++.|+++++++|+++|+++||||||+
T Consensus 154 l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~-v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 154 LSEISYVYIGDARNNMGNSLLLIGAKLGMD-VRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred cCCcEEEEECCCccCHHHHHHHHHHHcCCE-EEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 34444445566533 455 6666889997 9999998662 23456899999999999999999999999
Q ss_pred cccccccCCC-chHHHHhhcCCccCHHHHhhc-CCCcEEeCCCC---------------------CCccccccccCCCCc
Q 026861 152 RIQRERFGER-TDLYEEARGKYIVDQNVLQVM-EKHAVVLHPLP---------------------RLDEITVDVDADPRA 208 (232)
Q Consensus 152 rwq~Er~~~~-~~~~~~~~~~Y~Vt~elL~~a-k~daivMHpLP---------------------Rg~EIt~eV~d~p~S 208 (232)
+|++++...+ .+++.+++.+|+||.++|+.+ ++|++|||||| ||+||+++|+++|+|
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP~~~~~~~~~~~~~~~~~~~~~rg~Ei~~~V~d~~~s 312 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGRQIAEKYPELANGIEVTEDVFESPMN 312 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCCCCCCccccccccchhhhcccCCCcEECHHHhCCCcc
Confidence 9999875432 345667999999999999997 79999999999 478999999999999
Q ss_pred hHHHHHhhCHHHHHHHHHHHh
Q 026861 209 AYFRQAKNGLYIRMALLKLLL 229 (232)
Q Consensus 209 ~if~QAeNrl~vRmALL~~lL 229 (232)
+||+||+||+|+|||||.+++
T Consensus 313 ~i~~QaeNrl~~~kAvl~~~~ 333 (334)
T PRK01713 313 IAFEQAENRMHTIKAVMVASL 333 (334)
T ss_pred cHHHHHhchHHHHHHHHHHHh
Confidence 999999999999999999986
No 16
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=99.97 E-value=1.4e-31 Score=244.36 Aligned_cols=127 Identities=24% Similarity=0.317 Sum_probs=112.4
Q ss_pred HHHHhcCCcccccccchHhHH------HH-HHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCcc
Q 026861 102 VIEAQQFDRDILNAIFEDDIK------DY-LTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIV 174 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di~------e~-l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~V 174 (232)
+..+..||.+ +.++.|+++. +. +++.|+++++++|++||+++|||||+++|++++......++.+++.+|+|
T Consensus 169 ~~~l~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v 247 (304)
T PRK00779 169 LLAAALLGFD-LRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQV 247 (304)
T ss_pred HHHHHHcCCE-EEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCC
Confidence 5556788886 9999987652 22 56789999999999999999999999999998875434566788999999
Q ss_pred CHHHHhhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhCHHHHHHHHHHHh
Q 026861 175 DQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229 (232)
Q Consensus 175 t~elL~~ak~daivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lL 229 (232)
|.++|+.++++++|||||| ||+||+++|+++|+|+||+||+||+|+|||||.+++
T Consensus 248 ~~~~l~~~~~~~ivmHplP~~R~~Ei~~~V~~~p~s~~~~Qa~n~~~vrmAlL~~~l 304 (304)
T PRK00779 248 NEELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSVVWDEAENRLHAQKALLAWLL 304 (304)
T ss_pred CHHHHHhcCCCeEEecCCCccCCCcccHHHhCCCcchHHHHHhccHHHHHHHHHHhC
Confidence 9999999999999999999 999999999999999999999999999999999875
No 17
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=99.97 E-value=4e-31 Score=244.23 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=112.7
Q ss_pred HHHHhcCCcccccccchHhHH----------HHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcC
Q 026861 102 VIEAQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGK 171 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di~----------e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~ 171 (232)
+..+..||++ ++++.|+++. ++++..|.++++++|+++|+++||||||++|++++.+.+.+++.+++.+
T Consensus 173 ~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~ 251 (331)
T PRK02102 173 MVGGAKLGMD-VRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKP 251 (331)
T ss_pred HHHHHHcCCE-EEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHHHhccC
Confidence 5566788986 9999997651 2345689999999999999999999999999987765434677789999
Q ss_pred CccCHHHHh-hcCCCcEEeCCCCC-------------------CccccccccCCCCchHHHHHhhCHHHHHHHHHHHhc
Q 026861 172 YIVDQNVLQ-VMEKHAVVLHPLPR-------------------LDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 172 Y~Vt~elL~-~ak~daivMHpLPR-------------------g~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg 230 (232)
|+||.++|+ .+++|++||||||| |.||+++|+++|+|+||+||+||+|+|||||.+++|
T Consensus 252 y~vt~ell~~~~~~d~ivmH~lP~~~~~~~~~~~~~~~~~~~rg~EI~~ev~d~p~s~if~Qa~Nrl~vr~AvL~~~l~ 330 (331)
T PRK02102 252 YQVNMDLMKATGNPDVIFMHCLPAFHDTETKVGKEIAEKYGLKGLEVTDEVFESKYSIVFDEAENRMHTIKAVMVATLG 330 (331)
T ss_pred CcCCHHHHhhhcCCCCEEECCCCCCcccccchhhhhhhhcCCCceEecHHHhCCCcchhHhHHhccHHHHHHHHHHHhc
Confidence 999999999 47999999999997 779999999999999999999999999999999987
No 18
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=99.97 E-value=5.6e-31 Score=243.73 Aligned_cols=145 Identities=28% Similarity=0.451 Sum_probs=118.3
Q ss_pred eccccccccCCc---ccHHHHHH--HhcCCcccccccchHhH------HHHHHhCCCEEEEEcCHHHhhccCCEEEEccc
Q 026861 85 TQSTPSFTIGKK---FQLDDVIE--AQQFDRDILNAIFEDDI------KDYLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 85 ~~~~~~~~~g~~---~~~~~li~--A~~~~~~~l~v~~p~di------~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrw 153 (232)
++++.+.=+||+ +-+++++. +..+|.+ ++++.|+++ .+.++..|.++++++|++||+++||||||+++
T Consensus 157 l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 157 IDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVS-FTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLTRI 235 (338)
T ss_pred cCCCEEEEECcCCCCchHHHHHHHHHHhcCCE-EEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEcCc
Confidence 445555556664 33667554 3345786 889988765 34556789999999999999999999999999
Q ss_pred cccccCCCchHHHHhhcCCccCHHHHh-hcCCCcEEeCCCCC-----CccccccccCCCCchHHHHHhhCHHHHHHHHHH
Q 026861 154 QRERFGERTDLYEEARGKYIVDQNVLQ-VMEKHAVVLHPLPR-----LDEITVDVDADPRAAYFRQAKNGLYIRMALLKL 227 (232)
Q Consensus 154 q~Er~~~~~~~~~~~~~~Y~Vt~elL~-~ak~daivMHpLPR-----g~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~ 227 (232)
|+||++.. +++..+..+|+||.++|+ .+++|++||||||| |.||+++|+++|+|+||+||+||+|+|||||.+
T Consensus 236 q~e~~~~~-~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcLP~~~~~r~~Ei~~~V~d~p~s~~f~QAeNrl~~r~AlL~~ 314 (338)
T PRK08192 236 QEERFPSQ-EEANKYRGKFRLNQSIYTQHCKSNTVIMHPLPRDSRAQANELDNDLNSHPNLAIFRQADNGLLIRMALFAL 314 (338)
T ss_pred ccccccch-HHHHHhhhccccCHHHHHhhhCCCCEEECCCCCCCCCCCcEeCHHHhCCccchHHHHHhcCHHHHHHHHHH
Confidence 99887532 345556677999999995 58999999999995 599999999999999999999999999999999
Q ss_pred HhcC
Q 026861 228 LLVG 231 (232)
Q Consensus 228 lLg~ 231 (232)
++|.
T Consensus 315 ll~~ 318 (338)
T PRK08192 315 TLGV 318 (338)
T ss_pred HhCC
Confidence 9974
No 19
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=99.97 E-value=3.2e-31 Score=242.70 Aligned_cols=126 Identities=22% Similarity=0.254 Sum_probs=103.6
Q ss_pred HHHHhcCCcccccccchHhHH--------HHHHhCCCEEEEEcCHHHhhccCCEEEEcccccccc-CCC-----chHHHH
Q 026861 102 VIEAQQFDRDILNAIFEDDIK--------DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERF-GER-----TDLYEE 167 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di~--------e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~-~~~-----~~~~~~ 167 (232)
+..++.||++ ++++.|+++. +.+++.| .+++++|+++|+++|||||||+|++++. ... .+++.+
T Consensus 170 ~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~~~g-~i~~~~d~~~av~~aDvvy~d~w~~~~~~~~~~~~~~~~~r~~ 247 (311)
T PRK14804 170 IGITAALGIH-LTLVTPIAAKENIHAQTVERAKKKG-TLSWEMNLHKAVSHADYVYTDTWLDMEFFNDPSYADKKKQRME 247 (311)
T ss_pred HHHHHHcCCE-EEEECCCCccHHHHHHHHHHHHhcC-CeEEEeCHHHHhCCCCEEEeeeeEECcccCccchHHHHHHHHH
Confidence 5555778886 8888886642 2344455 7888999999999999999999998654 111 123346
Q ss_pred hhcCCccCHHHHhhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhCHHHHHHHHHHHhcC
Q 026861 168 ARGKYIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 168 ~~~~Y~Vt~elL~~ak~daivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg~ 231 (232)
++.+|+||.++|++ ++++|||||| ||+||+++|+++|+|+||+||+||+|+|||||.+++++
T Consensus 248 ~~~~y~v~~elm~~--~~~~vmH~lP~~Rg~Ei~~~V~d~p~s~if~QaeN~l~~r~AvL~~~l~~ 311 (311)
T PRK14804 248 LMMPYQINSSLMEK--TNAKVMHDMPIHAGYEITREVVLSDRSIIFQQAENRLDAQKAVILKLLEN 311 (311)
T ss_pred hccCCeECHHHHhC--CCCeEeCCCCCCCCceeCHHHhCCCcchHHHHHhcCHHHHHHHHHHHhcC
Confidence 78899999999984 5799999999 79999999999999999999999999999999999863
No 20
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=99.97 E-value=1.1e-30 Score=248.49 Aligned_cols=143 Identities=27% Similarity=0.505 Sum_probs=119.2
Q ss_pred ccccccccCCc---ccHHHHHHH-hcC-CcccccccchHhH------HHHHHhCCCEEEEEcCHHHhhccCCEEEEcccc
Q 026861 86 QSTPSFTIGKK---FQLDDVIEA-QQF-DRDILNAIFEDDI------KDYLTSQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 86 ~~~~~~~~g~~---~~~~~li~A-~~~-~~~~l~v~~p~di------~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq 154 (232)
+++.+.=+||+ .-+++++.+ +.+ |++ ++++.|+++ .+.+++.|+.+++++|++||+++||||||++||
T Consensus 240 ~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~-v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~q 318 (429)
T PRK11891 240 DGAHIALVGDLKYGRTVHSLVKLLALYRGLK-FTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRIQ 318 (429)
T ss_pred CCCEEEEECcCCCChHHHHHHHHHHHhcCCE-EEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCch
Confidence 33444445664 335665555 555 887 999998766 345667899999999999999999999999999
Q ss_pred ccccCCCchHHHHhhcCCccCHHHHhh-cCCCcEEeCCCCCC-----ccccccccCCCCchHHHHHhhCHHHHHHHHHHH
Q 026861 155 RERFGERTDLYEEARGKYIVDQNVLQV-MEKHAVVLHPLPRL-----DEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228 (232)
Q Consensus 155 ~Er~~~~~~~~~~~~~~Y~Vt~elL~~-ak~daivMHpLPRg-----~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~l 228 (232)
.|++.+. .+.+++.+|+||.++|+. +++|++|||||||+ +||+++|+++|+|+||+||+||+|+|||||.++
T Consensus 319 ~er~~~~--~~~~~~~~y~vt~ell~~~ak~dai~MHcLPr~~R~~g~EIs~eV~d~p~S~if~QAeNrl~vr~AvL~~l 396 (429)
T PRK11891 319 KERFADE--SFEGYTPDFQINQALVDAVCKPDTLIMHPLPRDSRPGANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVL 396 (429)
T ss_pred hhcccCH--HHHHhccCCcCCHHHHhCccCCCcEEECCCCCCCCCCCcEeCHHHhCCCcchHHHHHhccHHHHHHHHHHH
Confidence 9887532 346778899999999999 89999999999975 899999999999999999999999999999999
Q ss_pred hcC
Q 026861 229 LVG 231 (232)
Q Consensus 229 Lg~ 231 (232)
+|.
T Consensus 397 lg~ 399 (429)
T PRK11891 397 LGV 399 (429)
T ss_pred hCC
Confidence 974
No 21
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=99.96 E-value=3.1e-30 Score=243.17 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=107.9
Q ss_pred HHH-HHHhcCCcccccccchHhH------HH----HHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCC--------
Q 026861 100 DDV-IEAQQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGE-------- 160 (232)
Q Consensus 100 ~~l-i~A~~~~~~~l~v~~p~di------~e----~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~-------- 160 (232)
+++ ..+..||++ ++++.|+++ .+ ++++.|.++++++|++||+++|||||||+|++++...
T Consensus 208 ~Sl~~~~~~lG~~-v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~aDvVYtd~W~sm~~~~er~~~~~~ 286 (395)
T PRK07200 208 QGIIGLMTRFGMD-VTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDADIVYPKSWAPYKVMEERTELYRA 286 (395)
T ss_pred HHHHHHHHHcCCE-EEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCeeeccccccccccccc
Confidence 664 444899997 999999865 12 2456899999999999999999999999999755211
Q ss_pred -----------CchHHHHhhcCCccCHHHHhhcCCC-cEEeCCCC--C------CccccccccCCCCchHHHHHhhCHHH
Q 026861 161 -----------RTDLYEEARGKYIVDQNVLQVMEKH-AVVLHPLP--R------LDEITVDVDADPRAAYFRQAKNGLYI 220 (232)
Q Consensus 161 -----------~~~~~~~~~~~Y~Vt~elL~~ak~d-aivMHpLP--R------g~EIt~eV~d~p~S~if~QAeNrl~v 220 (232)
+..++.+++.+|+||.++|+.++++ ++|||||| | |.||+++|+++|+|+||+||+||+|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcLPa~r~~~~~rg~EIt~eV~d~p~S~if~QAeNrlh~ 366 (395)
T PRK07200 287 GDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCLPADISGVSCKEGEVTESVFDRYRIALYKEASWKPYI 366 (395)
T ss_pred ccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCCCCCCcccCCCCCEECHHHhCCCcchHHHHhcchHHH
Confidence 1123467899999999999999985 99999999 3 99999999999999999999999999
Q ss_pred HHHHHHH
Q 026861 221 RMALLKL 227 (232)
Q Consensus 221 RmALL~~ 227 (232)
|||||+.
T Consensus 367 ~~Avl~~ 373 (395)
T PRK07200 367 IAAMIFL 373 (395)
T ss_pred HHHHHHH
Confidence 9999987
No 22
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=99.96 E-value=4.9e-30 Score=239.12 Aligned_cols=127 Identities=16% Similarity=0.221 Sum_probs=107.9
Q ss_pred HH-HHHHhcCCcccccccchHhH------H----HHHHhCCCEEEEEcCHHHhhccCCEEEEcccccccc----------
Q 026861 100 DD-VIEAQQFDRDILNAIFEDDI------K----DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERF---------- 158 (232)
Q Consensus 100 ~~-li~A~~~~~~~l~v~~p~di------~----e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~---------- 158 (232)
++ ++.++.||++ ++++.|+++ . +++++.|+++++++|++||+++||||||++|+++++
T Consensus 191 ~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~ 269 (357)
T TIGR03316 191 QGIIGLMTRFGMD-VTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPKSWAPIAAMEKRTELYTG 269 (357)
T ss_pred HHHHHHHHHcCCE-EEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCeeccccccccchhccc
Confidence 55 6667899997 999999865 1 245578999999999999999999999999998752
Q ss_pred CC-C--------chHHHHhhcCCccCHHHHhhcC-CCcEEeCCCC---CCc-----cccccccCCCCchHHHHHhhCHHH
Q 026861 159 GE-R--------TDLYEEARGKYIVDQNVLQVME-KHAVVLHPLP---RLD-----EITVDVDADPRAAYFRQAKNGLYI 220 (232)
Q Consensus 159 ~~-~--------~~~~~~~~~~Y~Vt~elL~~ak-~daivMHpLP---Rg~-----EIt~eV~d~p~S~if~QAeNrl~v 220 (232)
++ . ..++.+++.+|+||.++|+.++ ++++|||||| ||+ ||+++|+++|+|+||+||+||+|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcLP~~~Rg~~~~~~Eit~~V~d~p~s~if~QAeNrl~~ 349 (357)
T TIGR03316 270 SDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCLPADIRGVSCEEGEVTEEVFDGYRSVIYKEASNKPYT 349 (357)
T ss_pred chhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCCCCCccCcccccccccHHHhCCCccHHHHHHhhhHHH
Confidence 00 0 0123358899999999999998 9999999999 677 999999999999999999999999
Q ss_pred HHHHHHH
Q 026861 221 RMALLKL 227 (232)
Q Consensus 221 RmALL~~ 227 (232)
|||||.+
T Consensus 350 r~AlL~~ 356 (357)
T TIGR03316 350 IAAMIAA 356 (357)
T ss_pred HHHhhcc
Confidence 9999975
No 23
>KOG1504 consensus Ornithine carbamoyltransferase OTC/ARG3 [Amino acid transport and metabolism]
Probab=99.96 E-value=5.9e-30 Score=229.99 Aligned_cols=137 Identities=21% Similarity=0.290 Sum_probs=123.2
Q ss_pred cCCcccH-HH-HHHHhcCCcccccccchHhH----------HHHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCC
Q 026861 93 IGKKFQL-DD-VIEAQQFDRDILNAIFEDDI----------KDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGE 160 (232)
Q Consensus 93 ~g~~~~~-~~-li~A~~~~~~~l~v~~p~di----------~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~ 160 (232)
.|||=.. || +|.|+.||+. +.++.|+++ +++++++|.++++++|+.||+.+|||||||+|.+|++++
T Consensus 196 iGD~NNvlhs~mia~ak~gih-~s~atPkg~e~d~div~~akq~a~eNgsk~eltnDp~eA~~~anvlvtDtwiSMGqe~ 274 (346)
T KOG1504|consen 196 IGDGNNVLHSWMIAAAKFGIH-FSCATPKGYEPDKDIVSKAKQAAEENGSKFELTNDPLEAVIGANVLVTDTWISMGQED 274 (346)
T ss_pred EccccHHHHHHHHHhhhcceE-EEecCCCCCCcchHHHHHHHHHHHhcCCEEEEecChHHhhcCCcEEEEehhhhcchHH
Confidence 3444332 56 7888999996 999999766 256778999999999999999999999999999999987
Q ss_pred CchHHHHhhcCCccCHHHHhhcCCCcEEeCCCCCC-ccccccccCCCCchHHHHHhhCHHHHHHHHHHHhc
Q 026861 161 RTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLPRL-DEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 161 ~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpLPRg-~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg 230 (232)
+.+.+.+.|.+||||+++|+.|+|++.|||||||. +||+++|+.+|+|++|+|||||+|++||+|..+|+
T Consensus 275 ekearlkaFqGfQV~~el~kvA~~~~~FmHCLPr~~eEVsdeVfy~~~SiVF~eAENR~~a~mavm~~ll~ 345 (346)
T KOG1504|consen 275 EKEARLKAFQGFQVTEELMKVAGPKAKFMHCLPRHPEEVSDEVFYGPYSIVFPEAENRKWAQMAVMLHLLG 345 (346)
T ss_pred HHHHHHHhhcCceehHHHHhhhCCCceEeeccCCChhhccCceeeccceeecchhhhhHHHHHHHHHHHhc
Confidence 77788899999999999999999999999999964 79999999999999999999999999999999886
No 24
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=99.96 E-value=6.8e-30 Score=233.63 Aligned_cols=158 Identities=34% Similarity=0.479 Sum_probs=116.8
Q ss_pred cccccccccccceeeccc-cccccCCcccHH------H-HHHHhcCC-cccccccchHhHH-------------------
Q 026861 71 QLPLRNSIQCWAVETQST-PSFTIGKKFQLD------D-VIEAQQFD-RDILNAIFEDDIK------------------- 122 (232)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~------~-li~A~~~~-~~~l~v~~p~di~------------------- 122 (232)
|-|.....+.-|... ++ |+||||||.|-| | +=.-..|| +++|+|++.+|++
T Consensus 109 RH~~egaa~~~a~~~-~~~pvINaGDG~~qHPTQ~LLDl~TI~~~~G~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v 187 (316)
T COG0540 109 RHPEEGAARLLAEFS-GVNPVINAGDGSHQHPTQALLDLYTIREEFGRLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEV 187 (316)
T ss_pred eCccccHHHHHHHhc-CCCceEECCCCCCCCccHHHHHHHHHHHHhCCcCCcEEEEEccccchHHHHHHHHHHHHcCCEE
Confidence 334444444433322 46 799999999988 2 11112344 5666666665442
Q ss_pred ---------------HHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCc-hH-HHHhhcCCccCHHHHhhcCCC
Q 026861 123 ---------------DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERT-DL-YEEARGKYIVDQNVLQVMEKH 185 (232)
Q Consensus 123 ---------------e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~-~~-~~~~~~~Y~Vt~elL~~ak~d 185 (232)
+.+.+.|..+...+..+|+++++||+|++|+|+||+.+.. .+ ..+++.-|+++.+.+ +|++
T Consensus 188 ~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~lRvQ~ER~~~~~~~s~~~~y~~~~~~~~~~~--~k~~ 265 (316)
T COG0540 188 YLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYMLRVQKERFNDPEEYSKVKEYYKLYGLTLERL--AKPD 265 (316)
T ss_pred EEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEeehhhHhhcCCccchHHHHHHHHHHHHHHHhh--cCCC
Confidence 4455666666667777779999999999999999997653 22 334555555555444 8999
Q ss_pred cEEeCCCC--CCccccccccCCCCchHHHHHhhCHHHHHHHHHHHhcC
Q 026861 186 AVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 186 aivMHpLP--Rg~EIt~eV~d~p~S~if~QAeNrl~vRmALL~~lLg~ 231 (232)
++|||||| |++||+++|+++|+|.||+||+||+++|||||+.++++
T Consensus 266 ~ivmHP~PvnR~~EI~~~v~~~p~s~~f~Q~~nGV~vRMAlL~~~l~~ 313 (316)
T COG0540 266 AIVMHPLPVNRVVEIASEVDDTPQSRYFQQVKNGVAVRMALLELLLGG 313 (316)
T ss_pred cEEECCCCccCCCcCchhhhcchHHHHHHHHHcCHHHHHHHHHHHhcc
Confidence 99999999 99999999999999999999999999999999999874
No 25
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=99.95 E-value=1.3e-27 Score=232.14 Aligned_cols=146 Identities=22% Similarity=0.292 Sum_probs=118.6
Q ss_pred eccccccccCCc---ccHHH-HHHHhcCC-cccccccchHhH------HHHHHhCCCEEEEEcCHHHhhccCC---EEEE
Q 026861 85 TQSTPSFTIGKK---FQLDD-VIEAQQFD-RDILNAIFEDDI------KDYLTSQGVEWEESADLMEVASKCD---VVYQ 150 (232)
Q Consensus 85 ~~~~~~~~~g~~---~~~~~-li~A~~~~-~~~l~v~~p~di------~e~l~~~G~~i~~~~dleEAl~~AD---VVYt 150 (232)
++++.+.=.||. +-+++ +..++.|| ++ ++++.|+++ .+.++++|..+++++|++||+++|| ++|+
T Consensus 172 l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~-v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~ 250 (525)
T PRK13376 172 NSFIHIALVGDLLHGRTVHSKVNGLKIFKNVK-VDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF 250 (525)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHhcCCcE-EEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence 445555566775 44666 45556788 76 999999776 2556678999999999999999999 5799
Q ss_pred ccccccccCCCc-hHHHHhhcCCccCHHHHhhcCCCcEEeCCCC--CCccccccccCC-CCchHHHHHhhCHHHHHHHHH
Q 026861 151 TRIQRERFGERT-DLYEEARGKYIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDAD-PRAAYFRQAKNGLYIRMALLK 226 (232)
Q Consensus 151 drwq~Er~~~~~-~~~~~~~~~Y~Vt~elL~~ak~daivMHpLP--Rg~EIt~eV~d~-p~S~if~QAeNrl~vRmALL~ 226 (232)
+|+|.||+++.. +++.+++.+|+||+++|+.++++++|||||| ||.|+.++++++ |+++||+||+||+|+|||||+
T Consensus 251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcLPa~Rg~Ee~~~vvD~~~~s~~f~QAeNgl~vrmAlL~ 330 (525)
T PRK13376 251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPLPRHKVYPTIPTFLDTLPLNGWETQAINGYWVRIVLLS 330 (525)
T ss_pred eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCCCCCCCCceeCHhhcCCcceeHHHHHhccHHHHHHHHH
Confidence 999999986542 3455677899999999999999999999999 787555555555 789999999999999999999
Q ss_pred HHhcC
Q 026861 227 LLLVG 231 (232)
Q Consensus 227 ~lLg~ 231 (232)
+++|+
T Consensus 331 ~ll~~ 335 (525)
T PRK13376 331 MLGGA 335 (525)
T ss_pred HHhCc
Confidence 99974
No 26
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=84.19 E-value=2.2 Score=39.28 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=38.8
Q ss_pred cCCcccHHH--HHHHhcCCcccccccchH-----hHHHHHHhCCCEEEEEcCHHHhhccCCEEEEcccccc
Q 026861 93 IGKKFQLDD--VIEAQQFDRDILNAIFED-----DIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRE 156 (232)
Q Consensus 93 ~g~~~~~~~--li~A~~~~~~~l~v~~p~-----di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~E 156 (232)
.|-|.|+.- ...+..++.+.++|.-+. .+.+.++..|..++..+|+++|+++||||.|-+-..+
T Consensus 134 iGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 134 IGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp E--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SS
T ss_pred ECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCC
Confidence 377887763 222345667767777653 3334444568999999999999999999999875443
No 27
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=81.21 E-value=4.3 Score=37.31 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=42.6
Q ss_pred ccCCcccHHHHH--HHhcCCcccccccch--HhH---HHHHHh-CCCEEEEEcCHHHhhccCCEEEEccccc
Q 026861 92 TIGKKFQLDDVI--EAQQFDRDILNAIFE--DDI---KDYLTS-QGVEWEESADLMEVASKCDVVYQTRIQR 155 (232)
Q Consensus 92 ~~g~~~~~~~li--~A~~~~~~~l~v~~p--~di---~e~l~~-~G~~i~~~~dleEAl~~ADVVYtdrwq~ 155 (232)
-.|-|.|..--+ .+..++++.++|.-+ +.. .+.+++ .|.+++..++++|++++||||.|.+-..
T Consensus 122 iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~ 193 (301)
T PRK06407 122 IIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD 193 (301)
T ss_pred EECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC
Confidence 348888876422 223456666666643 322 233333 4888989999999999999999988654
No 28
>PRK06823 ornithine cyclodeaminase; Validated
Probab=80.85 E-value=4.3 Score=37.65 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=41.4
Q ss_pred cCCcccHHHHHHH--hcCCcccccccch--H---hHHHHHHhCCCEEEEEcCHHHhhccCCEEEEcccc
Q 026861 93 IGKKFQLDDVIEA--QQFDRDILNAIFE--D---DIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 93 ~g~~~~~~~li~A--~~~~~~~l~v~~p--~---di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq 154 (232)
.|-|.++..-+.| ..+..+.++|.-+ + .+.+.+++.|.+++..++.++++++||||.|.+-.
T Consensus 134 iG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s 202 (315)
T PRK06823 134 VGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS 202 (315)
T ss_pred ECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC
Confidence 4778877642222 2345555555443 2 23344555688888899999999999999998753
No 29
>PRK07589 ornithine cyclodeaminase; Validated
Probab=80.77 E-value=4.1 Score=38.50 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=41.5
Q ss_pred ccCCcccHHHHHH--HhcCCcccccccch--H---hHHHHHHhCCCEEEEEcCHHHhhccCCEEEEccc
Q 026861 92 TIGKKFQLDDVIE--AQQFDRDILNAIFE--D---DIKDYLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 92 ~~g~~~~~~~li~--A~~~~~~~l~v~~p--~---di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrw 153 (232)
=.|-|.|+...+. +..+.+..++|.-. + .+.+.+++.|.+++..+|+++++++||||.|.+-
T Consensus 134 iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~ 202 (346)
T PRK07589 134 LIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTA 202 (346)
T ss_pred EECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecC
Confidence 3488888764222 23456665666443 2 2334444568888889999999999999999774
No 30
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=77.57 E-value=6.7 Score=32.43 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=37.6
Q ss_pred HHHHHhcCCcccccccchH-------hHHHHHHhCCCEEEEEc----CHHHhhccCCEEEEcc
Q 026861 101 DVIEAQQFDRDILNAIFED-------DIKDYLTSQGVEWEESA----DLMEVASKCDVVYQTR 152 (232)
Q Consensus 101 ~li~A~~~~~~~l~v~~p~-------di~e~l~~~G~~i~~~~----dleEAl~~ADVVYtdr 152 (232)
.+++...+++++-++.+-. -+-..+.+.|.+++.++ |+++++++||+|.+-.
T Consensus 17 ~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 17 ELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGS 79 (140)
T ss_pred HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEec
Confidence 4555545555555555542 22356678899999999 9999999999999876
No 31
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=76.36 E-value=5.1 Score=37.81 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=44.0
Q ss_pred CCcccHHH--HHHHhcCCcccccccchHhH-----HHHHHh-CCCEEEEEcCHHHhhccCCEEEEccccc
Q 026861 94 GKKFQLDD--VIEAQQFDRDILNAIFEDDI-----KDYLTS-QGVEWEESADLMEVASKCDVVYQTRIQR 155 (232)
Q Consensus 94 g~~~~~~~--li~A~~~~~~~l~v~~p~di-----~e~l~~-~G~~i~~~~dleEAl~~ADVVYtdrwq~ 155 (232)
|-|.+++= ......|+...++|.-+..- ...+.+ .|..+...+|.++|+++||+|.|.+--.
T Consensus 137 GaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~ 206 (330)
T COG2423 137 GAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPST 206 (330)
T ss_pred CCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCC
Confidence 77777763 33446788888888876322 233334 4445778999999999999999988644
No 32
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=71.39 E-value=5.6 Score=34.53 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=22.4
Q ss_pred HHHHhCC--CEEEEEcCHHHhhccCCEEEEcc
Q 026861 123 DYLTSQG--VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G--~~i~~~~dleEAl~~ADVVYtdr 152 (232)
.++++.| .+++.++|.+||++|||+|++.-
T Consensus 50 ~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~i 81 (183)
T PF02056_consen 50 RMVEEAGADLKVEATTDRREALEGADFVINQI 81 (183)
T ss_dssp HHHHHCTTSSEEEEESSHHHHHTTESEEEE--
T ss_pred HHHHhcCCCeEEEEeCCHHHHhCCCCEEEEEe
Confidence 3445555 56778999999999999998853
No 33
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=69.71 E-value=11 Score=34.96 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=38.7
Q ss_pred CCcccHHHHHHH--hcCCcccccccch--H---hHHHHHHhCCCEEEEEcCHHHhhccCCEEEEccc
Q 026861 94 GKKFQLDDVIEA--QQFDRDILNAIFE--D---DIKDYLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 94 g~~~~~~~li~A--~~~~~~~l~v~~p--~---di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrw 153 (232)
|-|.+..-.+.| ..+..+.+.|.-. + .+.+.+++.|..+...+|++|+++++|||++-+-
T Consensus 135 G~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~ 201 (325)
T TIGR02371 135 GAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTP 201 (325)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecC
Confidence 888888753333 2334444444332 2 2223344568778889999999999999998774
No 34
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=68.73 E-value=21 Score=30.51 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=39.1
Q ss_pred hcCCcccccccchHhHHH-HHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCC
Q 026861 106 QQFDRDILNAIFEDDIKD-YLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEK 184 (232)
Q Consensus 106 ~~~~~~~l~v~~p~di~e-~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~ 184 (232)
+.+|.. +.|+=-+.+.. .+..-|.++ .+++|+++.+|+++|.+=. .=.|+.+.|+..|.
T Consensus 43 r~~Ga~-V~V~e~DPi~alqA~~dGf~v---~~~~~a~~~adi~vtaTG~----------------~~vi~~e~~~~mkd 102 (162)
T PF00670_consen 43 RGLGAR-VTVTEIDPIRALQAAMDGFEV---MTLEEALRDADIFVTATGN----------------KDVITGEHFRQMKD 102 (162)
T ss_dssp HHTT-E-EEEE-SSHHHHHHHHHTT-EE---E-HHHHTTT-SEEEE-SSS----------------SSSB-HHHHHHS-T
T ss_pred hhCCCE-EEEEECChHHHHHhhhcCcEe---cCHHHHHhhCCEEEECCCC----------------ccccCHHHHHHhcC
Confidence 445553 44443333321 122456553 3689999999999997621 12367777888888
Q ss_pred CcEEeCCCCCCccccc
Q 026861 185 HAVVLHPLPRLDEITV 200 (232)
Q Consensus 185 daivMHpLPRg~EIt~ 200 (232)
++++.--.=-+.||+-
T Consensus 103 gail~n~Gh~d~Eid~ 118 (162)
T PF00670_consen 103 GAILANAGHFDVEIDV 118 (162)
T ss_dssp TEEEEESSSSTTSBTH
T ss_pred CeEEeccCcCceeEee
Confidence 8887644444556554
No 35
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=67.20 E-value=7.4 Score=37.70 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=24.3
Q ss_pred HHHHhCC--CEEEEEcCHHHhhccCCEEEEcc
Q 026861 123 DYLTSQG--VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G--~~i~~~~dleEAl~~ADVVYtdr 152 (232)
.++++.| .+++.+.|.+||++|||+|++.-
T Consensus 51 ~~~~~~g~~~~v~~ttD~~~Al~gADfVi~~i 82 (425)
T cd05197 51 RYVEEVGADIKFEKTMDLEDAIIDADFVINQF 82 (425)
T ss_pred HHHHhhCCCeEEEEeCCHHHHhCCCCEEEEee
Confidence 4455666 57889999999999999998764
No 36
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=67.15 E-value=8.8 Score=34.96 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=38.0
Q ss_pred HHhcCCcccccccchHhH---HHHHHhCCCE-----EEEEcCHHHhhccCCEEEEccc
Q 026861 104 EAQQFDRDILNAIFEDDI---KDYLTSQGVE-----WEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 104 ~A~~~~~~~l~v~~p~di---~e~l~~~G~~-----i~~~~dleEAl~~ADVVYtdrw 153 (232)
..+-||++.|.++-|... ..++...|++ ..++++++||+.|+|+||.|+-
T Consensus 24 aMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~~v~aTta 81 (242)
T COG0565 24 AMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALADCDLVVATTA 81 (242)
T ss_pred HHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhcCCCEEEEecc
Confidence 447799999999999763 2334445542 3578999999999999999983
No 37
>PRK06199 ornithine cyclodeaminase; Validated
Probab=63.77 E-value=20 Score=34.23 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=39.3
Q ss_pred cCCcccHHHHHHH-h-cC-CcccccccchH-----hHHHHHHhC--CC-EEEEEcCHHHhhccCCEEEEccc
Q 026861 93 IGKKFQLDDVIEA-Q-QF-DRDILNAIFED-----DIKDYLTSQ--GV-EWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 93 ~g~~~~~~~li~A-~-~~-~~~~l~v~~p~-----di~e~l~~~--G~-~i~~~~dleEAl~~ADVVYtdrw 153 (232)
.|-|.|+...++| . .+ +++.++|.-.. .+.+.+.+. |. +++.++|.+||+++||||.|.+-
T Consensus 161 iG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~ 232 (379)
T PRK06199 161 LGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNS 232 (379)
T ss_pred ECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccC
Confidence 4888888753333 2 23 35666665542 223333332 44 58889999999999999998664
No 38
>PLN02828 formyltetrahydrofolate deformylase
Probab=63.10 E-value=42 Score=30.85 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=57.5
Q ss_pred ccccccCCcccHHHHHHHhcCC---cccccccc-hH-----hHHHHHHhCCCEEEEEc---------CHHHhhccCCEEE
Q 026861 88 TPSFTIGKKFQLDDVIEAQQFD---RDILNAIF-ED-----DIKDYLTSQGVEWEESA---------DLMEVASKCDVVY 149 (232)
Q Consensus 88 ~~~~~~g~~~~~~~li~A~~~~---~~~l~v~~-p~-----di~e~l~~~G~~i~~~~---------dleEAl~~ADVVY 149 (232)
+.++=-|.|=-+.+|+.+.+-| .+-.-|+. ++ +..+.+++.|+.+.... .+.+.++++|+|.
T Consensus 73 iavlvSg~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliV 152 (268)
T PLN02828 73 IAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLV 152 (268)
T ss_pred EEEEEcCCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 5566668888888998886545 33222222 22 56788889999875321 1234566788888
Q ss_pred EccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCC--CC
Q 026861 150 QTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHP--LP 193 (232)
Q Consensus 150 tdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHp--LP 193 (232)
.-+|- ..+.+++++..+..++=+|| ||
T Consensus 153 LAgym-----------------~IL~~~~l~~~~~riINIHpSlLP 181 (268)
T PLN02828 153 LARYM-----------------QILSGNFLKGYGKDIINIHHGLLP 181 (268)
T ss_pred Eeeeh-----------------HhCCHHHHhhccCCEEEecCccCC
Confidence 77642 23666777777777788887 56
No 39
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=62.51 E-value=14 Score=34.61 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=35.6
Q ss_pred EEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCCCCC
Q 026861 134 ESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLPRL 195 (232)
Q Consensus 134 ~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpLPRg 195 (232)
..+++++.++.+|||..-.=..+. ...-++.+.++++|+.+++..+. ||
T Consensus 187 ~~~~Ld~lL~~sDiv~lh~PlT~e------------T~g~i~~~~~a~MK~gailIN~a-RG 235 (324)
T COG0111 187 GVDSLDELLAEADILTLHLPLTPE------------TRGLINAEELAKMKPGAILINAA-RG 235 (324)
T ss_pred ecccHHHHHhhCCEEEEcCCCCcc------------hhcccCHHHHhhCCCCeEEEECC-Cc
Confidence 557899999999999766532211 12457888888888888888875 54
No 40
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=60.18 E-value=24 Score=32.55 Aligned_cols=66 Identities=17% Similarity=0.088 Sum_probs=43.1
Q ss_pred cccccCCcccHHHHHHHh--cCCcccccccchH--hHHHHHH----hCCCEEEEEcCHHHhhccCCEEEEcccc
Q 026861 89 PSFTIGKKFQLDDVIEAQ--QFDRDILNAIFED--DIKDYLT----SQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 89 ~~~~~g~~~~~~~li~A~--~~~~~~l~v~~p~--di~e~l~----~~G~~i~~~~dleEAl~~ADVVYtdrwq 154 (232)
.+.-.|-|.+..-.+.|. ..+...++|.-.. ...++++ ..|.++...+|+++++.++|||.+.+-.
T Consensus 131 ~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 131 VVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCC
Confidence 455568888887544443 3565556666542 2222222 3477887789999999999999998743
No 41
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=60.04 E-value=12 Score=36.96 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.4
Q ss_pred HHHHhCC--CEEEEEcCHHHhhccCCEEEEcc
Q 026861 123 DYLTSQG--VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G--~~i~~~~dleEAl~~ADVVYtdr 152 (232)
.++++.| .+++.+.|++||++|||+|++.-
T Consensus 54 ~~v~~~g~~~kv~~ttd~~eAl~gAdfVi~~~ 85 (442)
T COG1486 54 KLVEEAGAPVKVEATTDRREALEGADFVITQI 85 (442)
T ss_pred HHHHhhCCCeEEEEecCHHHHhcCCCEEEEEE
Confidence 3445555 56788999999999999997753
No 42
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=59.76 E-value=12 Score=36.12 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=24.0
Q ss_pred HHHHhCC--CEEEEEcCHHHhhccCCEEEEcc
Q 026861 123 DYLTSQG--VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G--~~i~~~~dleEAl~~ADVVYtdr 152 (232)
.++++.| .+++.+.|.++|++|||+|++.-
T Consensus 52 ~~~~~~~~~~~v~~t~d~~~al~gadfVi~~~ 83 (419)
T cd05296 52 RMVKKAGLPIKVHLTTDRREALEGADFVFTQI 83 (419)
T ss_pred HHHHhhCCCeEEEEeCCHHHHhCCCCEEEEEE
Confidence 4445555 67888999999999999998764
No 43
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=58.84 E-value=26 Score=29.22 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=51.7
Q ss_pred CCcccHHH-HHHHhcCCcccccccchHhHHHH-HHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcC
Q 026861 94 GKKFQLDD-VIEAQQFDRDILNAIFEDDIKDY-LTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGK 171 (232)
Q Consensus 94 g~~~~~~~-li~A~~~~~~~l~v~~p~di~e~-l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~ 171 (232)
|-|.=-.. ...++.||+. +.+.-|..-... ....|.. ..+++|.++.+|||....=-.+ ...
T Consensus 43 G~G~IG~~vA~~l~~fG~~-V~~~d~~~~~~~~~~~~~~~---~~~l~ell~~aDiv~~~~plt~------------~T~ 106 (178)
T PF02826_consen 43 GYGRIGRAVARRLKAFGMR-VIGYDRSPKPEEGADEFGVE---YVSLDELLAQADIVSLHLPLTP------------ETR 106 (178)
T ss_dssp STSHHHHHHHHHHHHTT-E-EEEEESSCHHHHHHHHTTEE---ESSHHHHHHH-SEEEE-SSSST------------TTT
T ss_pred EEcCCcCeEeeeeecCCce-eEEecccCChhhhcccccce---eeehhhhcchhhhhhhhhcccc------------ccc
Confidence 54443333 4455688885 555555433222 3455543 4699999999999977652111 123
Q ss_pred CccCHHHHhhcCCCcEEeCCCCCC
Q 026861 172 YIVDQNVLQVMEKHAVVLHPLPRL 195 (232)
Q Consensus 172 Y~Vt~elL~~ak~daivMHpLPRg 195 (232)
.-++.+.++.+|+++++.-.. ||
T Consensus 107 ~li~~~~l~~mk~ga~lvN~a-RG 129 (178)
T PF02826_consen 107 GLINAEFLAKMKPGAVLVNVA-RG 129 (178)
T ss_dssp TSBSHHHHHTSTTTEEEEESS-SG
T ss_pred eeeeeeeeeccccceEEEecc-ch
Confidence 568999999999999987764 54
No 44
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=57.49 E-value=38 Score=31.24 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=37.8
Q ss_pred HHHHHHhCCCEEEEEcCHH--Hhh---c--cCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCCC
Q 026861 121 IKDYLTSQGVEWEESADLM--EVA---S--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLP 193 (232)
Q Consensus 121 i~e~l~~~G~~i~~~~dle--EAl---~--~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpLP 193 (232)
+.+++.+.|+.+....+.. +.+ + ++|+++.-.| ++.+.+++++..+-.++-+||-+
T Consensus 48 v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~~~Dliv~~~~-----------------~~iip~~il~~~~~g~iNiHpSl 110 (313)
T TIGR00460 48 VKVLAEEKGIPVFQPEKQRQLEELPLVRELKPDVIVVVSF-----------------GKILPKEFLDLFPYGCINVHPSL 110 (313)
T ss_pred HHHHHHHcCCCEEecCCCCcHHHHHHHHhhCCCEEEEccc-----------------hhhCCHHHHhhccCCEEEecCcc
Confidence 5678888898875544432 222 2 5777776654 24477788887777889999865
No 45
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=55.11 E-value=12 Score=36.36 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=23.4
Q ss_pred HHHHhCC--CEEEEEcCHHHhhccCCEEEEcc
Q 026861 123 DYLTSQG--VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G--~~i~~~~dleEAl~~ADVVYtdr 152 (232)
.++++.| .+++.+.|.+||++|||+|++.-
T Consensus 51 ~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~~i 82 (437)
T cd05298 51 ILFKENYPEIKFVYTTDPEEAFTDADFVFAQI 82 (437)
T ss_pred HHHHhhCCCeEEEEECCHHHHhCCCCEEEEEe
Confidence 4444544 56888999999999999998654
No 46
>PRK06141 ornithine cyclodeaminase; Validated
Probab=54.77 E-value=35 Score=31.30 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=42.6
Q ss_pred cccccccCCcccHHHHHH--HhcCCcccccccch--HhHHHH---HHhCCCEEEEEcCHHHhhccCCEEEEccc
Q 026861 87 STPSFTIGKKFQLDDVIE--AQQFDRDILNAIFE--DDIKDY---LTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 87 ~~~~~~~g~~~~~~~li~--A~~~~~~~l~v~~p--~di~e~---l~~~G~~i~~~~dleEAl~~ADVVYtdrw 153 (232)
...+.-.|-|-+...+.. +..++...++|.-. +...++ +++.|..+...+++++++++||||++.+-
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~ 198 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATL 198 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeC
Confidence 344555688888876554 23345554666543 333333 33346667788999999999999988764
No 47
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=54.51 E-value=20 Score=32.85 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=56.5
Q ss_pred cccCCcccHHHHHHHhcCCccccccc-chHhHHHHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhh
Q 026861 91 FTIGKKFQLDDVIEAQQFDRDILNAI-FEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEAR 169 (232)
Q Consensus 91 ~~~g~~~~~~~li~A~~~~~~~l~v~-~p~di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~ 169 (232)
+-=||.+++..+..-...|++ +.++ +|.+- + ...|+. +.++.++++++||+|..-.=..... .... .....
T Consensus 7 v~ggd~r~~~~~~~l~~~G~~-v~~~g~~~~~--~-~~~g~~--~~~~~~~~~~~ad~ii~~~p~~~~~-~~i~-~~~~~ 78 (296)
T PRK08306 7 VIGGDARQLELIRKLVELGAK-VSLVGFDQLD--H-GFTGAT--KSSSLEEALSDVDVIILPVPGTNDE-GNVD-TVFSN 78 (296)
T ss_pred EEcCcHHHHHHHHHHHHCCCE-EEEEeccccc--c-ccCCce--eeccHHHHhccCCEEEECCccccCC-ceee-ccccc
Confidence 445999999876666667887 5553 34321 1 234666 5677889999999998664221111 0000 00112
Q ss_pred cCCccCHHHHhhcCCCc-EEeCCCC
Q 026861 170 GKYIVDQNVLQVMEKHA-VVLHPLP 193 (232)
Q Consensus 170 ~~Y~Vt~elL~~ak~da-ivMHpLP 193 (232)
.++.++.+.++..++.. +|.=.++
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~~G~~~ 103 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIFSGIAN 103 (296)
T ss_pred cCCcchHHHHHhcCCCCEEEEecCC
Confidence 34667788888888777 4554444
No 48
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=53.42 E-value=16 Score=34.00 Aligned_cols=50 Identities=6% Similarity=0.021 Sum_probs=32.5
Q ss_pred eccccccccCCcccHH------HHHHH-hcCC---cccccccchHhH-------HHHHHhCCCEEEEE
Q 026861 85 TQSTPSFTIGKKFQLD------DVIEA-QQFD---RDILNAIFEDDI-------KDYLTSQGVEWEES 135 (232)
Q Consensus 85 ~~~~~~~~~g~~~~~~------~li~A-~~~~---~~~l~v~~p~di-------~e~l~~~G~~i~~~ 135 (232)
.-++|+||+|++ ..| |+..- ..|| .++++|++.++. ...+...|.++.+.
T Consensus 117 ~~~vPVINag~~-~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~ 183 (311)
T PRK14804 117 GSQVPVINGCDN-MFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLV 183 (311)
T ss_pred HCCCCEEECCCC-CCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 346999999999 466 53332 2355 688999998762 23344567666544
No 49
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=52.35 E-value=41 Score=29.19 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=53.8
Q ss_pred ccccccCCcccHHHHHHHhcCC---cccccccchH----hHHHHHHhCCCEEEEEc--CH----------HHhh--ccCC
Q 026861 88 TPSFTIGKKFQLDDVIEAQQFD---RDILNAIFED----DIKDYLTSQGVEWEESA--DL----------MEVA--SKCD 146 (232)
Q Consensus 88 ~~~~~~g~~~~~~~li~A~~~~---~~~l~v~~p~----di~e~l~~~G~~i~~~~--dl----------eEAl--~~AD 146 (232)
+-+|-.|+|--+..++.+.+=+ .+ +.++++. ...+++++.|+.+...+ +. .+.+ .++|
T Consensus 4 i~vl~sg~gs~~~~ll~~~~~~~~~~~-I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 82 (200)
T PRK05647 4 IVVLASGNGSNLQAIIDACAAGQLPAE-IVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPD 82 (200)
T ss_pred EEEEEcCCChhHHHHHHHHHcCCCCcE-EEEEEecCccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcC
Confidence 4567788888888777774323 32 4443333 24678889999875532 11 1222 2467
Q ss_pred EEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCCC
Q 026861 147 VVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLP 193 (232)
Q Consensus 147 VVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpLP 193 (232)
+++.-.| .+.+.+++++..+..++=+||.+
T Consensus 83 ~iv~~~~-----------------~~ii~~~~l~~~~~~~iNiHpsl 112 (200)
T PRK05647 83 LVVLAGF-----------------MRILGPTFVSAYEGRIINIHPSL 112 (200)
T ss_pred EEEhHHh-----------------hhhCCHHHHhhccCCEEEEeCcc
Confidence 7665443 24567777777777788888855
No 50
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=51.01 E-value=16 Score=33.83 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=31.8
Q ss_pred ccccccccCCcccHH------HHHHH-hcCC-cccccccchHhHH---------HHHHhCCCEEEEE
Q 026861 86 QSTPSFTIGKKFQLD------DVIEA-QQFD-RDILNAIFEDDIK---------DYLTSQGVEWEES 135 (232)
Q Consensus 86 ~~~~~~~~g~~~~~~------~li~A-~~~~-~~~l~v~~p~di~---------e~l~~~G~~i~~~ 135 (232)
-++||||+|+|-+.| |+..- ..|| .++++|++.+|.+ ..+...|.++.+.
T Consensus 116 s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~ 182 (301)
T TIGR00670 116 SEVPVINAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLI 182 (301)
T ss_pred CCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEE
Confidence 469999999976555 43322 2345 6789999988752 3344566665443
No 51
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=50.20 E-value=31 Score=33.29 Aligned_cols=55 Identities=24% Similarity=0.170 Sum_probs=38.5
Q ss_pred cCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCCCCCccccccccCCC
Q 026861 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLPRLDEITVDVDADP 206 (232)
Q Consensus 136 ~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpLPRg~EIt~eV~d~p 206 (232)
..++||++++||+.|++=. .=.|+.+.|+..+.|+++---+=-+.||+-.-...|
T Consensus 261 ~tm~ea~~e~difVTtTGc----------------~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~ 315 (434)
T KOG1370|consen 261 TTLEEAIREVDIFVTTTGC----------------KDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTP 315 (434)
T ss_pred eeHHHhhhcCCEEEEccCC----------------cchhhHHHHHhCcCCcEEeccccccceeehhhccCC
Confidence 4578999999999988721 123677888888999888555445667766555544
No 52
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=49.93 E-value=38 Score=29.96 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.5
Q ss_pred CCEEEEEcCHHHhhccCCEEEEcc
Q 026861 129 GVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 129 G~~i~~~~dleEAl~~ADVVYtdr 152 (232)
..+++.++|+++++++||+|+.+-
T Consensus 55 ~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 55 DIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CcEEEECCchHHHhCCCCEEEECC
Confidence 567888899999999999998854
No 53
>PRK08618 ornithine cyclodeaminase; Validated
Probab=48.78 E-value=52 Score=30.29 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=41.7
Q ss_pred cccccCCcccHHHHHHH--hcCCcccccccch--HhHHHHHH----hCCCEEEEEcCHHHhhccCCEEEEccc
Q 026861 89 PSFTIGKKFQLDDVIEA--QQFDRDILNAIFE--DDIKDYLT----SQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 89 ~~~~~g~~~~~~~li~A--~~~~~~~l~v~~p--~di~e~l~----~~G~~i~~~~dleEAl~~ADVVYtdrw 153 (232)
.+.-.|-|.+....+.+ ...+...+.+.-. +...++++ ..|.++...+|.+++++++|||++.+-
T Consensus 129 ~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 129 TLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTN 201 (325)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccC
Confidence 34555888887654433 2345555555543 22222222 357777788999999999999999884
No 54
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.55 E-value=30 Score=32.21 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=49.1
Q ss_pred eeccccccccCCccc---------HH---HHHHHhcCCcccccccchH-------hHHHHHHhCCCEEEEEc----CHHH
Q 026861 84 ETQSTPSFTIGKKFQ---------LD---DVIEAQQFDRDILNAIFED-------DIKDYLTSQGVEWEESA----DLME 140 (232)
Q Consensus 84 ~~~~~~~~~~g~~~~---------~~---~li~A~~~~~~~l~v~~p~-------di~e~l~~~G~~i~~~~----dleE 140 (232)
.+|.++-+|.|.=+. .. .|++....++.+-+|++-+ .+-..+.+.|.++++++ +++|
T Consensus 118 DVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e 197 (296)
T PRK14188 118 DVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPA 197 (296)
T ss_pred ccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 578888888773211 11 4666655577777777765 11256668899999887 7999
Q ss_pred hhccCCEEEEcc
Q 026861 141 VASKCDVVYQTR 152 (232)
Q Consensus 141 Al~~ADVVYtdr 152 (232)
+++.||||++-.
T Consensus 198 ~~~~ADIVIsav 209 (296)
T PRK14188 198 VCRRADILVAAV 209 (296)
T ss_pred HHhcCCEEEEec
Confidence 999999998876
No 55
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=47.16 E-value=1.1e+02 Score=30.85 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=50.7
Q ss_pred ccccCCccc-HHHHHHHhcCCcccccccchHh-HHHHHHhCCCEEEEEcC-------------------------HHHhh
Q 026861 90 SFTIGKKFQ-LDDVIEAQQFDRDILNAIFEDD-IKDYLTSQGVEWEESAD-------------------------LMEVA 142 (232)
Q Consensus 90 ~~~~g~~~~-~~~li~A~~~~~~~l~v~~p~d-i~e~l~~~G~~i~~~~d-------------------------leEAl 142 (232)
++=.|-|.- +--+..|..+|.. +.+.-... -++.+++.|.++...+. +.|.+
T Consensus 167 VlViGaG~iGl~Aa~~ak~lGA~-V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~ 245 (511)
T TIGR00561 167 VLVIGAGVAGLAAIGAANSLGAI-VRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQA 245 (511)
T ss_pred EEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHh
Confidence 333344443 2235666777875 55443332 35667778877632222 34567
Q ss_pred ccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEE
Q 026861 143 SKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVV 188 (232)
Q Consensus 143 ~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daiv 188 (232)
+++||||++.....+ ..+.-+++++++..|+..++
T Consensus 246 ~~~DIVI~TalipG~-----------~aP~Lit~emv~~MKpGsvI 280 (511)
T TIGR00561 246 KEVDIIITTALIPGK-----------PAPKLITEEMVDSMKAGSVI 280 (511)
T ss_pred CCCCEEEECcccCCC-----------CCCeeehHHHHhhCCCCCEE
Confidence 899999999854321 12344778888877766554
No 56
>PRK07340 ornithine cyclodeaminase; Validated
Probab=46.94 E-value=51 Score=30.18 Aligned_cols=66 Identities=15% Similarity=0.037 Sum_probs=41.2
Q ss_pred ccccccCCcccHHHHHHHh--cCCcccccccchH--h---HHHHHHhCCCEEEEEcCHHHhhccCCEEEEcccc
Q 026861 88 TPSFTIGKKFQLDDVIEAQ--QFDRDILNAIFED--D---IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 88 ~~~~~~g~~~~~~~li~A~--~~~~~~l~v~~p~--d---i~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq 154 (232)
..+.-.|-|.+....+.|. .++.+.+.+.-.. . +.+.+++.|..+. .++.++++.++|||.+.+-.
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~~~~~~av~~aDiVitaT~s 198 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-PLDGEAIPEAVDLVVTATTS 198 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-ECCHHHHhhcCCEEEEccCC
Confidence 3445558888887654443 3455545555432 2 2233334455655 68899999999999998753
No 57
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=45.82 E-value=21 Score=33.17 Aligned_cols=48 Identities=25% Similarity=0.292 Sum_probs=32.5
Q ss_pred ccccccccCCcccHH------H---HHHHhcCC-cccccccchHhH---------HHHHHhCCCEEEEE
Q 026861 86 QSTPSFTIGKKFQLD------D---VIEAQQFD-RDILNAIFEDDI---------KDYLTSQGVEWEES 135 (232)
Q Consensus 86 ~~~~~~~~g~~~~~~------~---li~A~~~~-~~~l~v~~p~di---------~e~l~~~G~~i~~~ 135 (232)
-++|+||+|+|-+.| | |++ .|| .++++|++.+|. ...+...|.++.+.
T Consensus 122 ~~vPVINa~~g~~~HPtQ~LaDl~Ti~e--~~G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~ 188 (305)
T PRK00856 122 SDVPVINAGDGSHQHPTQALLDLLTIRE--EFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLI 188 (305)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHH--HhCCCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEE
Confidence 469999999875444 4 444 344 688999998775 24455677776554
No 58
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=45.17 E-value=58 Score=26.87 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=58.0
Q ss_pred cccceeeccccccccCCcccHHH-HHHHhcCCcccccccchHhH---HHHHHhCCCEEEEEc------------------
Q 026861 79 QCWAVETQSTPSFTIGKKFQLDD-VIEAQQFDRDILNAIFEDDI---KDYLTSQGVEWEESA------------------ 136 (232)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~-li~A~~~~~~~l~v~~p~di---~e~l~~~G~~i~~~~------------------ 136 (232)
...+-.+..+.++=.|.|.---. ...+..+|.+ +..++.. .+.++..+.....+.
T Consensus 12 ~~~~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~---v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 88 (168)
T PF01262_consen 12 LGGPGGVPPAKVVVTGAGRVGQGAAEIAKGLGAE---VVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEH 88 (168)
T ss_dssp ECTTTEE-T-EEEEESTSHHHHHHHHHHHHTT-E---EEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHH
T ss_pred ccCCCCCCCeEEEEECCCHHHHHHHHHHhHCCCE---EEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHH
Confidence 44466777788888888887764 5666677765 4444433 344556666544442
Q ss_pred ------CHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEE
Q 026861 137 ------DLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVV 188 (232)
Q Consensus 137 ------dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daiv 188 (232)
.+.+.++.+|+|++....+.+ ..+.-|+.++++.+++..++
T Consensus 89 ~~~~~~~f~~~i~~~d~vI~~~~~~~~-----------~~P~lvt~~~~~~m~~gsvI 135 (168)
T PF01262_consen 89 PESYESNFAEFIAPADIVIGNGLYWGK-----------RAPRLVTEEMVKSMKPGSVI 135 (168)
T ss_dssp CCHHHHHHHHHHHH-SEEEEHHHBTTS-----------S---SBEHHHHHTSSTTEEE
T ss_pred HHHhHHHHHHHHhhCcEEeeecccCCC-----------CCCEEEEhHHhhccCCCceE
Confidence 356778899999987754432 23455899999988866554
No 59
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=44.51 E-value=67 Score=29.33 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=38.5
Q ss_pred cccccccCCcccHHH-HHHHhcCCcccccccchHh-HHHHHHhCCCEEEEEcCHHHhhccCCEEEEcc
Q 026861 87 STPSFTIGKKFQLDD-VIEAQQFDRDILNAIFEDD-IKDYLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 87 ~~~~~~~g~~~~~~~-li~A~~~~~~~l~v~~p~d-i~e~l~~~G~~i~~~~dleEAl~~ADVVYtdr 152 (232)
+..++=.|-|.--.- +..++.+|.. +.++-... -.+.++..|.++...+++.+.++++|+|+.+.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~-V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGAN-VTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECC
Confidence 344444455543333 3344566764 55554322 23455677877654567788999999999864
No 60
>PRK08291 ectoine utilization protein EutC; Validated
Probab=43.91 E-value=64 Score=29.77 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=41.1
Q ss_pred ccccCCcccHHHHHHHhc--CCcccccccch--HhHHHHHH----hCCCEEEEEcCHHHhhccCCEEEEcccc
Q 026861 90 SFTIGKKFQLDDVIEAQQ--FDRDILNAIFE--DDIKDYLT----SQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 90 ~~~~g~~~~~~~li~A~~--~~~~~l~v~~p--~di~e~l~----~~G~~i~~~~dleEAl~~ADVVYtdrwq 154 (232)
+.=.|-|.+....+.|.. .++..+++.-. +...++++ ..|.++...+|+++++.++|||.+.+-.
T Consensus 135 v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 135 AAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPS 207 (330)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCC
Confidence 344577777765444432 34444555543 22222322 3478877889999999999999988754
No 61
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=43.11 E-value=42 Score=31.18 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.5
Q ss_pred cCHHHhhccCCEEEEcc
Q 026861 136 ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 136 ~dleEAl~~ADVVYtdr 152 (232)
.+++|.++++|||..-.
T Consensus 192 ~~l~ell~~sDvv~lh~ 208 (323)
T PRK15409 192 CDLDTLLQESDFVCIIL 208 (323)
T ss_pred cCHHHHHHhCCEEEEeC
Confidence 48999999999998754
No 62
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=41.63 E-value=1.1e+02 Score=26.46 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=51.1
Q ss_pred ccccccCCcccHHHHHHHhcCCcc--cccccchH--hH--HHHHHhCCCEEEEEc--C----------HHHhhc--cCCE
Q 026861 88 TPSFTIGKKFQLDDVIEAQQFDRD--ILNAIFED--DI--KDYLTSQGVEWEESA--D----------LMEVAS--KCDV 147 (232)
Q Consensus 88 ~~~~~~g~~~~~~~li~A~~~~~~--~l~v~~p~--di--~e~l~~~G~~i~~~~--d----------leEAl~--~ADV 147 (232)
+.+|-.|.|--+-.++.+.+-+-. .+.++++. +. .+.+++.|+.+...+ + +.+.++ ++|+
T Consensus 3 iail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~ 82 (190)
T TIGR00639 3 IVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDL 82 (190)
T ss_pred EEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCE
Confidence 345666777777766665442321 13333333 23 477888999875422 1 112232 4788
Q ss_pred EEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCC
Q 026861 148 VYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPL 192 (232)
Q Consensus 148 VYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpL 192 (232)
++.-.|- +.+.+++++..+..++=+||.
T Consensus 83 iv~~~~~-----------------~il~~~~l~~~~~~~iNiHps 110 (190)
T TIGR00639 83 VVLAGFM-----------------RILGPTFLSRFAGRILNIHPS 110 (190)
T ss_pred EEEeCcc-----------------hhCCHHHHhhccCCEEEEeCC
Confidence 7776542 446666777666678888884
No 63
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=40.82 E-value=56 Score=29.95 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=37.1
Q ss_pred hHHHHHHhCCCEEEEEcCH-----HHhhc--cCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCC
Q 026861 120 DIKDYLTSQGVEWEESADL-----MEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPL 192 (232)
Q Consensus 120 di~e~l~~~G~~i~~~~dl-----eEAl~--~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpL 192 (232)
.+.+++++.|+.+....++ .+.++ +.|++++-.| .+.+.+++++..+-.++-+||.
T Consensus 47 ~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~-----------------~~iip~~il~~~~~g~iNiHps 109 (309)
T PRK00005 47 PVKQLALEHGIPVLQPEKLRDPEFLAELAALNADVIVVVAY-----------------GQILPKAVLDIPRLGCINLHAS 109 (309)
T ss_pred HHHHHHHHcCCCEECcCCCCCHHHHHHHHhcCcCEEEEehh-----------------hcccCHHHHhcCCCCEEEEeCc
Confidence 3567888888886443332 12222 4677766554 2557788888777778999986
Q ss_pred C
Q 026861 193 P 193 (232)
Q Consensus 193 P 193 (232)
+
T Consensus 110 l 110 (309)
T PRK00005 110 L 110 (309)
T ss_pred c
Confidence 5
No 64
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=39.54 E-value=29 Score=32.68 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=24.6
Q ss_pred ccccccccCCcccHH------H---HHHHhcCC-cccccccchHhH
Q 026861 86 QSTPSFTIGKKFQLD------D---VIEAQQFD-RDILNAIFEDDI 121 (232)
Q Consensus 86 ~~~~~~~~g~~~~~~------~---li~A~~~~-~~~l~v~~p~di 121 (232)
-++||||+|++ +.| | |.+. || .++++|++.+|.
T Consensus 122 ~~vPVINa~~~-~~HPtQaLaDl~Ti~e~--~g~l~g~~va~vGd~ 164 (331)
T PRK02102 122 SGVPVWNGLTD-EWHPTQMLADFMTMKEH--FGPLKGLKLAYVGDG 164 (331)
T ss_pred CCCCEEECCCC-CCChHHHHHHHHHHHHH--hCCCCCCEEEEECCC
Confidence 45999999998 566 4 4443 34 678999998876
No 65
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=38.94 E-value=55 Score=26.50 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=21.0
Q ss_pred HhCCCEEEEEcCHHHhhccCCEEEEcc
Q 026861 126 TSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 126 ~~~G~~i~~~~dleEAl~~ADVVYtdr 152 (232)
...+....+..+..+++++||||..+-
T Consensus 51 ~~~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 51 APLPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp HGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred hhcccccccccccccccccccEEEEec
Confidence 345556667778889999999999876
No 66
>PLN02494 adenosylhomocysteinase
Probab=38.13 E-value=86 Score=31.31 Aligned_cols=49 Identities=24% Similarity=0.237 Sum_probs=30.9
Q ss_pred CHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCCCCCcccccc
Q 026861 137 DLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLPRLDEITVD 201 (232)
Q Consensus 137 dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpLPRg~EIt~e 201 (232)
+++|+++++|||++++ + ....++.+.|+.+++++++.-..=-+.||+.+
T Consensus 302 ~leEal~~ADVVI~tT----G------------t~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~ 350 (477)
T PLN02494 302 TLEDVVSEADIFVTTT----G------------NKDIIMVDHMRKMKNNAIVCNIGHFDNEIDML 350 (477)
T ss_pred cHHHHHhhCCEEEECC----C------------CccchHHHHHhcCCCCCEEEEcCCCCCccCHH
Confidence 5678888999998743 1 11235677777888887776554224555543
No 67
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=37.86 E-value=35 Score=27.89 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=18.3
Q ss_pred EEEEEcCHHHhhccCCEEEEcccc
Q 026861 131 EWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 131 ~i~~~~dleEAl~~ADVVYtdrwq 154 (232)
.+..++|+++++++||+|+.....
T Consensus 56 ~i~~t~dl~~a~~~ad~IiiavPs 79 (157)
T PF01210_consen 56 NIKATTDLEEALEDADIIIIAVPS 79 (157)
T ss_dssp TEEEESSHHHHHTT-SEEEE-S-G
T ss_pred ccccccCHHHHhCcccEEEecccH
Confidence 467899999999999999987753
No 68
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.69 E-value=75 Score=29.48 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=62.1
Q ss_pred chhhhhhccccchhhhh----hccccccccccccc--------eeeccccccccCCcccHH------------HHHHHhc
Q 026861 52 SKSRLLLSHEKSVKWKQ----TQQLPLRNSIQCWA--------VETQSTPSFTIGKKFQLD------------DVIEAQQ 107 (232)
Q Consensus 52 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~------------~li~A~~ 107 (232)
.+..++-..+++++... .-++||-..+.... -.+|.++-.|.|.=+.-. .|++...
T Consensus 74 ~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~ 153 (285)
T PRK14189 74 SEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMTGQPLFRPCTPYGVMKMLESIG 153 (285)
T ss_pred CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcC
Confidence 34444344444444332 25677765554332 357778777777433211 3666555
Q ss_pred CCcccccccchH-------hHHHHHHhCCCEEEEEc----CHHHhhccCCEEEEcc
Q 026861 108 FDRDILNAIFED-------DIKDYLTSQGVEWEESA----DLMEVASKCDVVYQTR 152 (232)
Q Consensus 108 ~~~~~l~v~~p~-------di~e~l~~~G~~i~~~~----dleEAl~~ADVVYtdr 152 (232)
.+..+-++++-+ .+-..+...|++++.++ |+.+.++.||+|++-.
T Consensus 154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~av 209 (285)
T PRK14189 154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAV 209 (285)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcC
Confidence 566666666653 22356678899987765 6889999999999875
No 69
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=35.66 E-value=1.2e+02 Score=28.82 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=35.7
Q ss_pred cccccCCcccHHHHHHHhcCCcccccccchH---hHHHHH----------------HhCCCEEEEEcCHHHhhccCCEEE
Q 026861 89 PSFTIGKKFQLDDVIEAQQFDRDILNAIFED---DIKDYL----------------TSQGVEWEESADLMEVASKCDVVY 149 (232)
Q Consensus 89 ~~~~~g~~~~~~~li~A~~~~~~~l~v~~p~---di~e~l----------------~~~G~~i~~~~dleEAl~~ADVVY 149 (232)
++|..=|.|.+.++|+|..-|-- .-+.|+ .+.+.+ +..|.+ +++|-.||++++|+++
T Consensus 71 ~~~~v~d~fd~~~v~~ah~~g~~--e~vmp~ir~~v~~~a~~~pkppk~~ihf~~pEdaGvk--VtsDD~EAvk~aei~I 146 (342)
T PRK00961 71 PGFVVIDDFDYKEVMEAHLAGNP--EKVMPKIREKVKAKAKELPKPPKGCIHFVHPEDLGLK--VTTDDREAVADADIVI 146 (342)
T ss_pred CCeEEeecCCHHHHHHHHhcCCH--HHhhHHHHHHHHHHHhhCCCCCccceeecCHHHcCce--EecCcHHHhcCCCEEE
Confidence 44555577788889999765431 122331 111111 134555 6677789999999998
Q ss_pred Ecc
Q 026861 150 QTR 152 (232)
Q Consensus 150 tdr 152 (232)
+=.
T Consensus 147 ~ft 149 (342)
T PRK00961 147 TWL 149 (342)
T ss_pred Eec
Confidence 643
No 70
>PRK06988 putative formyltransferase; Provisional
Probab=35.00 E-value=1.1e+02 Score=28.24 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=37.3
Q ss_pred hHHHHHHhCCCEEEEEcCH-----HHhhc--cCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCC
Q 026861 120 DIKDYLTSQGVEWEESADL-----MEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPL 192 (232)
Q Consensus 120 di~e~l~~~G~~i~~~~dl-----eEAl~--~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpL 192 (232)
.+.+++.+.|+.+....++ .+.++ ++|++++-.| ++.+.+++++..+-.++-+||-
T Consensus 46 ~v~~~A~~~gip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~-----------------~~iip~~il~~~~~g~iNiHps 108 (312)
T PRK06988 46 SVAAVAAEHGIPVITPADPNDPELRAAVAAAAPDFIFSFYY-----------------RHMIPVDLLALAPRGAYNMHGS 108 (312)
T ss_pred HHHHHHHHcCCcEEccccCCCHHHHHHHHhcCCCEEEEehh-----------------ccccCHHHHhcCCCCEEEeeCc
Confidence 4578888899987553333 12222 4788776654 2456777777777778888985
Q ss_pred C
Q 026861 193 P 193 (232)
Q Consensus 193 P 193 (232)
+
T Consensus 109 l 109 (312)
T PRK06988 109 L 109 (312)
T ss_pred c
Confidence 3
No 71
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=34.67 E-value=1.9e+02 Score=28.45 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=30.3
Q ss_pred HHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCCCCCcccccc
Q 026861 138 LMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLPRLDEITVD 201 (232)
Q Consensus 138 leEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpLPRg~EIt~e 201 (232)
++||+..+||++|.+= +.-.|+.+.|...|.++++---+==+.||+-+
T Consensus 258 m~~Aa~~gDifiT~TG----------------nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~ 305 (420)
T COG0499 258 MEEAAKTGDIFVTATG----------------NKDVIRKEHFEKMKDGAILANAGHFDVEIDVA 305 (420)
T ss_pred hHHhhhcCCEEEEccC----------------CcCccCHHHHHhccCCeEEecccccceeccHH
Confidence 4677888899888861 12346677777777777765544334555433
No 72
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=34.48 E-value=51 Score=30.08 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=51.9
Q ss_pred cccCCcccHHHHHHHhcCCcccccccchHhHHHHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhc
Q 026861 91 FTIGKKFQLDDVIEAQQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARG 170 (232)
Q Consensus 91 ~~~g~~~~~~~li~A~~~~~~~l~v~~p~di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~ 170 (232)
+-=||.+++.-+......|.. |.++--+... ..-..+...++.+++++++|+|+.-.-..... ..... .-...
T Consensus 6 v~ggd~r~~~~~~~l~~~g~~-v~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~-~~i~~-~~~~~ 78 (287)
T TIGR02853 6 VIGGDARQLELIRKLEELDAK-ISLIGFDQLE----DGFTGAVKCELLELDLTTLDVVILPVPGTSHD-GKVAT-VFSNE 78 (287)
T ss_pred EEcccHHHHHHHHHHHHCCCE-EEEEeccccc----cccccceeecchhhhhccCCEEEECCccccCC-ceEec-ccccC
Confidence 445999999876666677886 5555332111 10113346677888899999998766422111 11100 01123
Q ss_pred CCccCHHHHhhcCCCcE
Q 026861 171 KYIVDQNVLQVMEKHAV 187 (232)
Q Consensus 171 ~Y~Vt~elL~~ak~dai 187 (232)
...++.++|+.+++.++
T Consensus 79 ~~~l~~~~l~~~~~~~~ 95 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT 95 (287)
T ss_pred CccccHHHHHhcCCCCE
Confidence 45578888887775544
No 73
>PLN02527 aspartate carbamoyltransferase
Probab=34.02 E-value=19 Score=33.35 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=25.2
Q ss_pred ccccccccCCcccHH------HHHHH-hcCC-cccccccchHhH
Q 026861 86 QSTPSFTIGKKFQLD------DVIEA-QQFD-RDILNAIFEDDI 121 (232)
Q Consensus 86 ~~~~~~~~g~~~~~~------~li~A-~~~~-~~~l~v~~p~di 121 (232)
-++||||+|+|-+.| |+... ..|| .++++|++.+|.
T Consensus 117 ~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~vGD~ 160 (306)
T PLN02527 117 AEIPVINAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDL 160 (306)
T ss_pred CCCCEEECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCC
Confidence 469999999875555 53333 2345 678999998876
No 74
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=33.33 E-value=88 Score=31.01 Aligned_cols=45 Identities=22% Similarity=0.165 Sum_probs=26.4
Q ss_pred HhcCCcccccccchHhHHHHHHhCCCEEEEEcCHHHhhccCCEEEEcc
Q 026861 105 AQQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 105 A~~~~~~~l~v~~p~di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdr 152 (232)
++.||+. +.+.=|..-.+.....|.. ..++++|.++++|+|..-.
T Consensus 157 l~~fG~~-V~~~d~~~~~~~~~~~g~~--~~~~l~ell~~aDvV~l~l 201 (525)
T TIGR01327 157 AKAFGMK-VLAYDPYISPERAEQLGVE--LVDDLDELLARADFITVHT 201 (525)
T ss_pred HHhCCCE-EEEECCCCChhHHHhcCCE--EcCCHHHHHhhCCEEEEcc
Confidence 3466764 4444331112223345644 4468999999999998654
No 75
>PLN02342 ornithine carbamoyltransferase
Probab=33.33 E-value=43 Score=31.87 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=24.6
Q ss_pred ccccccccCCcccHH------H---HHHHhcCCcccccccchHhH
Q 026861 86 QSTPSFTIGKKFQLD------D---VIEAQQFDRDILNAIFEDDI 121 (232)
Q Consensus 86 ~~~~~~~~g~~~~~~------~---li~A~~~~~~~l~v~~p~di 121 (232)
-++|+||+|++. .| | |.+... +.++++|++.+|.
T Consensus 161 ~~vPVINA~~~~-~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~ 203 (348)
T PLN02342 161 SSVPVINGLTDY-NHPCQIMADALTIIEHIG-RLEGTKVVYVGDG 203 (348)
T ss_pred CCCCEEECCCCC-CChHHHHHHHHHHHHHhC-CcCCCEEEEECCC
Confidence 469999999984 57 4 444332 4778999998874
No 76
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.15 E-value=86 Score=29.36 Aligned_cols=83 Identities=19% Similarity=0.104 Sum_probs=55.9
Q ss_pred ccccccccccccc--------eeeccccccccCCcccHH------------HHHHHhcCCcccccccchHh--H-----H
Q 026861 70 QQLPLRNSIQCWA--------VETQSTPSFTIGKKFQLD------------DVIEAQQFDRDILNAIFEDD--I-----K 122 (232)
Q Consensus 70 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~------------~li~A~~~~~~~l~v~~p~d--i-----~ 122 (232)
-++||-.-+.... -.+|.++-.|.|.=+.-+ .|++....++.+-++++-+- + -
T Consensus 97 vqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA 176 (301)
T PRK14194 97 LQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMA 176 (301)
T ss_pred EeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHH
Confidence 4677765544432 257777777777433221 47776666777777777642 2 2
Q ss_pred HHHHhCCCEEEEEc----CHHHhhccCCEEEEcc
Q 026861 123 DYLTSQGVEWEESA----DLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~i~~~~----dleEAl~~ADVVYtdr 152 (232)
.++.+.|.++++++ ++.|++++||||++-.
T Consensus 177 ~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsav 210 (301)
T PRK14194 177 ALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAV 210 (301)
T ss_pred HHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEec
Confidence 56678899987763 6889999999998865
No 77
>PLN03139 formate dehydrogenase; Provisional
Probab=33.12 E-value=61 Score=31.17 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=26.9
Q ss_pred EcCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCC
Q 026861 135 SADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHP 191 (232)
Q Consensus 135 ~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHp 191 (232)
.++++|.++++|||....=-.+ +-. ..++.+.++.+|+++++.=.
T Consensus 246 ~~~l~ell~~sDvV~l~lPlt~-------~T~-----~li~~~~l~~mk~ga~lIN~ 290 (386)
T PLN03139 246 EEDLDAMLPKCDVVVINTPLTE-------KTR-----GMFNKERIAKMKKGVLIVNN 290 (386)
T ss_pred cCCHHHHHhhCCEEEEeCCCCH-------HHH-----HHhCHHHHhhCCCCeEEEEC
Confidence 4689999999999987642111 010 12355666666666655544
No 78
>PRK04148 hypothetical protein; Provisional
Probab=32.86 E-value=1.2e+02 Score=25.19 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=37.9
Q ss_pred ccccCCcccHH-HHHHHhcCCcccccccchHhHHHHHHhCCCEEEEEcCH----HHhhccCCEEEEcccccc
Q 026861 90 SFTIGKKFQLD-DVIEAQQFDRDILNAIFEDDIKDYLTSQGVEWEESADL----MEVASKCDVVYQTRIQRE 156 (232)
Q Consensus 90 ~~~~g~~~~~~-~li~A~~~~~~~l~v~~p~di~e~l~~~G~~i~~~~dl----eEAl~~ADVVYtdrwq~E 156 (232)
++-.|-||-.+ ....+ +.|++-+-+=+-++..+.+++.|..+. .+|+ .+..++||+||.-|-..|
T Consensus 20 ileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~~~~~v-~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 20 IVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKLGLNAF-VDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred EEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhCCeEE-ECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 44456666543 22222 446652222223444666778887763 3333 477899999999996543
No 79
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=32.35 E-value=54 Score=32.21 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=27.6
Q ss_pred hHhHHHHHHhCCC--EEEEEcCHHHhhccCCEEEEcc
Q 026861 118 EDDIKDYLTSQGV--EWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 118 p~di~e~l~~~G~--~i~~~~dleEAl~~ADVVYtdr 152 (232)
.+++.++++++.. ++..|+|.++|++++||++...
T Consensus 48 EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIav 84 (414)
T COG1004 48 EPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAV 84 (414)
T ss_pred CccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEc
Confidence 3566677776554 4999999999999999998665
No 80
>PRK10433 putative RNA methyltransferase; Provisional
Probab=31.66 E-value=67 Score=28.75 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=36.1
Q ss_pred HHHHhcCCcccccccchHhHH---HHHHhCCC-----EEEEEcCHHHhhccCCEEEEccc
Q 026861 102 VIEAQQFDRDILNAIFEDDIK---DYLTSQGV-----EWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di~---e~l~~~G~-----~i~~~~dleEAl~~ADVVYtdrw 153 (232)
...+..||+..|.++-|.... ......|+ ...++++++||++++|.++.++=
T Consensus 20 aRam~nfG~~~L~lV~p~~~~~~~a~~~A~gA~d~L~~a~v~~tL~eAl~d~~~vigtta 79 (228)
T PRK10433 20 ARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALHDVDFTVATTA 79 (228)
T ss_pred HHHHHHCCCCEEEEeCCCCCCcHHHHHHhccHHHHhcCceEECCHHHHHHhCCeEEEEcc
Confidence 556688999999999776331 11112332 24577999999999998887764
No 81
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.09 E-value=91 Score=28.94 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=55.7
Q ss_pred cccccccccccc--------ceeeccccccccCCcccHH------------HHHHHhcCCcccccccchHh--H-----H
Q 026861 70 QQLPLRNSIQCW--------AVETQSTPSFTIGKKFQLD------------DVIEAQQFDRDILNAIFEDD--I-----K 122 (232)
Q Consensus 70 ~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~------------~li~A~~~~~~~l~v~~p~d--i-----~ 122 (232)
-++||-.-+... .-.+|.++-+|.|.=+.-+ .|++.-..++.+-++++-+- + -
T Consensus 96 vqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla 175 (284)
T PRK14179 96 VQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMA 175 (284)
T ss_pred EcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHH
Confidence 567775444322 2357778877776443221 47776666777778887653 1 2
Q ss_pred HHHHhCCCEEEEE----cCHHHhhccCCEEEEcc
Q 026861 123 DYLTSQGVEWEES----ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~i~~~----~dleEAl~~ADVVYtdr 152 (232)
.++.+.|++++++ .++.+.+++||||++-.
T Consensus 176 ~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~av 209 (284)
T PRK14179 176 QLLLDKNATVTLTHSRTRNLAEVARKADILVVAI 209 (284)
T ss_pred HHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEec
Confidence 5667889998875 56788999999998865
No 82
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=31.09 E-value=40 Score=33.04 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=24.9
Q ss_pred ccccccccCCcccHH------HHHHH-hcCC-----cccccccchHhH
Q 026861 86 QSTPSFTIGKKFQLD------DVIEA-QQFD-----RDILNAIFEDDI 121 (232)
Q Consensus 86 ~~~~~~~~g~~~~~~------~li~A-~~~~-----~~~l~v~~p~di 121 (232)
-++||||+|+|-+.| |+... ..|| .++++|++.+|+
T Consensus 203 s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~ 250 (429)
T PRK11891 203 TNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDL 250 (429)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcC
Confidence 469999999865555 53333 2343 678999999886
No 83
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=31.07 E-value=1.5e+02 Score=24.99 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=35.2
Q ss_pred HHHHHhcCCcccccccchHh-------HHHHHHhCCCEEEEE----cCHHHhhccCCEEEEcccc
Q 026861 101 DVIEAQQFDRDILNAIFEDD-------IKDYLTSQGVEWEES----ADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 101 ~li~A~~~~~~~l~v~~p~d-------i~e~l~~~G~~i~~~----~dleEAl~~ADVVYtdrwq 154 (232)
.|++.-.++.++-++++-+. +-..+...|++++.+ .++++.+++||+|++-.-+
T Consensus 25 ~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~ 89 (160)
T PF02882_consen 25 ELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGK 89 (160)
T ss_dssp HHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSS
T ss_pred HHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeecc
Confidence 45665555666666666532 235677889999887 5688999999999988743
No 84
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=29.90 E-value=1.3e+02 Score=30.07 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.3
Q ss_pred CHHHhhccCCEEEEcc
Q 026861 137 DLMEVASKCDVVYQTR 152 (232)
Q Consensus 137 dleEAl~~ADVVYtdr 152 (232)
+++++++++|||++..
T Consensus 302 ~leell~~ADIVI~at 317 (476)
T PTZ00075 302 TLEDVVETADIFVTAT 317 (476)
T ss_pred cHHHHHhcCCEEEECC
Confidence 5788899999998863
No 85
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=28.81 E-value=1.7e+02 Score=26.99 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=13.7
Q ss_pred cCHHHhhccCCEEEEcc
Q 026861 136 ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 136 ~dleEAl~~ADVVYtdr 152 (232)
.+++|.++.+|||..-.
T Consensus 188 ~~l~ell~~sDvv~lh~ 204 (311)
T PRK08410 188 VSLEELLKTSDIISIHA 204 (311)
T ss_pred ecHHHHhhcCCEEEEeC
Confidence 36899999999997654
No 86
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=28.54 E-value=1.7e+02 Score=23.28 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=58.2
Q ss_pred eeccccccccCCcccHHHHHHH-hcCCcccccccc--hHhHHHHHHhC---CCEEEEEcCHHHhhccCCEEEEccccccc
Q 026861 84 ETQSTPSFTIGKKFQLDDVIEA-QQFDRDILNAIF--EDDIKDYLTSQ---GVEWEESADLMEVASKCDVVYQTRIQRER 157 (232)
Q Consensus 84 ~~~~~~~~~~g~~~~~~~li~A-~~~~~~~l~v~~--p~di~e~l~~~---G~~i~~~~dleEAl~~ADVVYtdrwq~Er 157 (232)
.+++.+++=.|-|-....++.+ ...|...+.++- ++...+.++.. ++.+...+++.+.+.++|+|+..+=..
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~-- 86 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG-- 86 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT--
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC--
Confidence 4455566666777777764444 444666566654 23333444443 345666788888999999999887221
Q ss_pred cCCCchHHHHhhcCCccCHHHHhhcCC--CcEEeCCCCCCcc
Q 026861 158 FGERTDLYEEARGKYIVDQNVLQVMEK--HAVVLHPLPRLDE 197 (232)
Q Consensus 158 ~~~~~~~~~~~~~~Y~Vt~elL~~ak~--daivMHpLPRg~E 197 (232)
.+.++.+.++...+ ..++==..||++|
T Consensus 87 -------------~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 87 -------------MPIITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp -------------STSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred -------------CcccCHHHHHHHHhhhhceeccccCCCCC
Confidence 13677778776553 3444445788743
No 87
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=28.36 E-value=93 Score=29.91 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.1
Q ss_pred CEEEEEcCHHHhhccCCEEEEcc
Q 026861 130 VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 130 ~~i~~~~dleEAl~~ADVVYtdr 152 (232)
.+++.+.|+++|+++||+|+..-
T Consensus 60 ~~I~~ttD~~eal~~AD~Vi~ai 82 (423)
T cd05297 60 LKIEATTDRREALDGADFVINTI 82 (423)
T ss_pred eEEEEeCCHHHHhcCCCEEEEee
Confidence 57888999999999999998765
No 88
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.21 E-value=84 Score=24.55 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=27.4
Q ss_pred chHhHHHHHHhCCCEEEEE----cCHHHhhccCCEEEEccc
Q 026861 117 FEDDIKDYLTSQGVEWEES----ADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 117 ~p~di~e~l~~~G~~i~~~----~dleEAl~~ADVVYtdrw 153 (232)
+.+.+++++++.|..+++. .+.++.+.++|+|.+..=
T Consensus 16 la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQ 56 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQ 56 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcCh
Confidence 3456678899999887654 344567889999988873
No 89
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.11 E-value=1.3e+02 Score=27.98 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=54.7
Q ss_pred cccccccccccc--------ceeeccccccccCCcccHH------------HHHHHhcCCcccccccchHh--H-----H
Q 026861 70 QQLPLRNSIQCW--------AVETQSTPSFTIGKKFQLD------------DVIEAQQFDRDILNAIFEDD--I-----K 122 (232)
Q Consensus 70 ~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~------------~li~A~~~~~~~l~v~~p~d--i-----~ 122 (232)
-++||-.-+... .-.+|.++-+|.|.=+.=+ .+++...+++++-++++-+. + -
T Consensus 96 vq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla 175 (286)
T PRK14175 96 VQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVS 175 (286)
T ss_pred EeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcCCCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHH
Confidence 466766544432 2357888877776432111 46666666777777777542 1 2
Q ss_pred HHHHhCCCEEEEEcC----HHHhhccCCEEEEcc
Q 026861 123 DYLTSQGVEWEESAD----LMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~i~~~~d----leEAl~~ADVVYtdr 152 (232)
..+...|++++++++ +.+.+++||||+...
T Consensus 176 ~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAv 209 (286)
T PRK14175 176 KLLLQKNASVTILHSRSKDMASYLKDADVIVSAV 209 (286)
T ss_pred HHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECC
Confidence 566688999888755 678999999999876
No 90
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=28.00 E-value=80 Score=22.90 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=24.0
Q ss_pred hHhHHHHHHhCCCEEEEEcCHHHhhccCCEEEEccc
Q 026861 118 EDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 118 p~di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrw 153 (232)
|+...+..++.|..+. ..+..|+++++|+|.....
T Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 36 PEKAAELAKEYGVQAT-ADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp HHHHHHHHHHCTTEEE-SEEHHHHHHHTSEEEE-S-
T ss_pred HHHHHHHHHhhccccc-cCChHHhhccCCEEEEEEC
Confidence 4445566677887742 2378999999999988774
No 91
>PLN02928 oxidoreductase family protein
Probab=27.78 E-value=1.7e+02 Score=27.38 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=26.2
Q ss_pred cCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCC
Q 026861 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPL 192 (232)
Q Consensus 136 ~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpL 192 (232)
.+++|+++++|||....=-... ....++.+.++.+|+++++.-..
T Consensus 218 ~~L~ell~~aDiVvl~lPlt~~------------T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 218 EDIYEFAGEADIVVLCCTLTKE------------TAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cCHHHHHhhCCEEEECCCCChH------------hhcccCHHHHhcCCCCeEEEECC
Confidence 3677888999999876522110 12335556666666665555443
No 92
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=27.66 E-value=64 Score=24.72 Aligned_cols=25 Identities=24% Similarity=0.133 Sum_probs=19.7
Q ss_pred EEEEEcCHHHhhccCCEEEEccccc
Q 026861 131 EWEESADLMEVASKCDVVYQTRIQR 155 (232)
Q Consensus 131 ~i~~~~dleEAl~~ADVVYtdrwq~ 155 (232)
.++.+++++++++++|+|+..+-+.
T Consensus 53 ~~~~~~~~~~~~~~~D~vvl~t~h~ 77 (106)
T PF03720_consen 53 GVEVCDDLEEALKGADAVVLATDHD 77 (106)
T ss_dssp CEEEESSHHHHHTTESEEEESS--G
T ss_pred ceEEecCHHHHhcCCCEEEEEecCH
Confidence 4557899999999999999888543
No 93
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.66 E-value=1.2e+02 Score=22.79 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=24.5
Q ss_pred HhHHHHHHhCCCEEEEE--------cC--HHHhhccCCEEEEcc
Q 026861 119 DDIKDYLTSQGVEWEES--------AD--LMEVASKCDVVYQTR 152 (232)
Q Consensus 119 ~di~e~l~~~G~~i~~~--------~d--leEAl~~ADVVYtdr 152 (232)
+.+++.+++.|.++... .. ++..+..||+|+..+
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t 56 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFT 56 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEe
Confidence 45567888899987666 12 567888999986554
No 94
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.61 E-value=1.1e+02 Score=28.46 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=53.5
Q ss_pred cccccccccccc--------ceeeccccccccCCcccHH------------HHHHHhcCCcccccccchHh-------HH
Q 026861 70 QQLPLRNSIQCW--------AVETQSTPSFTIGKKFQLD------------DVIEAQQFDRDILNAIFEDD-------IK 122 (232)
Q Consensus 70 ~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~------------~li~A~~~~~~~l~v~~p~d-------i~ 122 (232)
-++||-.-+... .-.+|.++-+|.|.-+.=+ .|++.-.+++.+-++++.+- +-
T Consensus 97 vqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla 176 (284)
T PRK14177 97 LQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMGVETYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMA 176 (284)
T ss_pred EcCCCCCCCCHHHHHhccCcccccccCChhhHHHHHcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHH
Confidence 467775444332 2357777777776332111 46776666677777777532 22
Q ss_pred HHHHhCCCEEEEEc----CHHHhhccCCEEEEcc
Q 026861 123 DYLTSQGVEWEESA----DLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~i~~~~----dleEAl~~ADVVYtdr 152 (232)
.++...|+++++++ |+.+..++||+|+.-.
T Consensus 177 ~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAv 210 (284)
T PRK14177 177 MLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAV 210 (284)
T ss_pred HHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeC
Confidence 56667899998875 4788999999998764
No 95
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=27.60 E-value=1.5e+02 Score=24.16 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=18.7
Q ss_pred HhCCCEEEEEcCHHHhhccCCEEEEccc
Q 026861 126 TSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 126 ~~~G~~i~~~~dleEAl~~ADVVYtdrw 153 (232)
.+.|+. +.++.+|++++||+|..-.-
T Consensus 48 ~~aGA~--I~~~~~ev~~~adiIl~v~~ 73 (136)
T PF05222_consen 48 EEAGAE--IVSRAEEVYSDADIILKVKP 73 (136)
T ss_dssp HHTTEE--EESSHHHHHTTSSEEEESS-
T ss_pred hhCCcE--EecCchhhcccCCEEEEECC
Confidence 356766 45676789999999987664
No 96
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=27.52 E-value=1.7e+02 Score=27.83 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=32.3
Q ss_pred CcccHHHHHHHhcCCcccccccchH---hHHHHH----------------HhCCCEEEEEcCHHHhhccCCEEEEcc
Q 026861 95 KKFQLDDVIEAQQFDRDILNAIFED---DIKDYL----------------TSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 95 ~~~~~~~li~A~~~~~~~l~v~~p~---di~e~l----------------~~~G~~i~~~~dleEAl~~ADVVYtdr 152 (232)
|.|.+.++|+|..-|-- .-+.|+ .+.+.+ +..|.+ +++|-.||+++||++++=.
T Consensus 75 d~fd~~~v~~ah~~g~~--e~vmp~ir~~v~~~a~~~pkppk~~ihf~~pEdaGvk--VtsDD~EAv~~aei~I~ft 147 (340)
T TIGR01723 75 DDFDPKEVIEAHLEGNP--ESIMPKIREVVNAKAKELPKPPKGAIHFVHPEDLGLK--VTTDDREAVEDADIIITWL 147 (340)
T ss_pred ecCCHHHHHHHHhcCCH--HHhhHHHHHHHHHHHhhCCCCCcceeeecCHHHcCce--EecCcHHHhcCCCEEEEEc
Confidence 66777789999776431 122231 111111 134555 6677789999999998643
No 97
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.97 E-value=1.2e+02 Score=28.10 Aligned_cols=83 Identities=11% Similarity=0.228 Sum_probs=53.7
Q ss_pred cccccccccccc--------ceeeccccccccCCcccHH------------HHHHHhcCCcccccccchHh-------HH
Q 026861 70 QQLPLRNSIQCW--------AVETQSTPSFTIGKKFQLD------------DVIEAQQFDRDILNAIFEDD-------IK 122 (232)
Q Consensus 70 ~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~------------~li~A~~~~~~~l~v~~p~d-------i~ 122 (232)
-++||-.-+... .-.+|.++-.|.|.=+.-+ .|++.-..+..+-++++-+- +-
T Consensus 94 vqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla 173 (282)
T PRK14169 94 VQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWANEPTVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLA 173 (282)
T ss_pred EeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHH
Confidence 466766444332 2357777777776443221 46666666666677776531 22
Q ss_pred HHHHhCCCEEEEE----cCHHHhhccCCEEEEcc
Q 026861 123 DYLTSQGVEWEES----ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~i~~~----~dleEAl~~ADVVYtdr 152 (232)
.++...|++++++ .|+.+..++||||+.-.
T Consensus 174 ~lL~~~~atVtichs~T~~l~~~~~~ADIvI~Av 207 (282)
T PRK14169 174 GLMVNHDATVTIAHSKTRNLKQLTKEADILVVAV 207 (282)
T ss_pred HHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEcc
Confidence 5666789998776 46788999999998765
No 98
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=26.68 E-value=3.8e+02 Score=25.32 Aligned_cols=92 Identities=12% Similarity=0.167 Sum_probs=49.9
Q ss_pred eccccccccCCcccHHH-HHHHhcCCcccccccch--HhHHHHHHhCCCEEEEE----cCHHHhhccCCEEEEcc-cccc
Q 026861 85 TQSTPSFTIGKKFQLDD-VIEAQQFDRDILNAIFE--DDIKDYLTSQGVEWEES----ADLMEVASKCDVVYQTR-IQRE 156 (232)
Q Consensus 85 ~~~~~~~~~g~~~~~~~-li~A~~~~~~~l~v~~p--~di~e~l~~~G~~i~~~----~dleEAl~~ADVVYtdr-wq~E 156 (232)
+....++=.|-|.--.. +..+..+|.. +.++=. +.........|..+... +++.++++++|||++.. |...
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGAT-VTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 33444444466654443 5566777875 555532 22222223445543221 45678899999999875 3211
Q ss_pred ccCCCchHHHHhhcCCccCHHHHhhcCCCcEEe
Q 026861 157 RFGERTDLYEEARGKYIVDQNVLQVMEKHAVVL 189 (232)
Q Consensus 157 r~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivM 189 (232)
+ .+.-++.++++.++++.++.
T Consensus 244 ~------------~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 244 K------------APKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred C------------CCcCcCHHHHhcCCCCCEEE
Confidence 1 11236777777666665543
No 99
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=26.19 E-value=29 Score=32.13 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=17.0
Q ss_pred EEEEEcCHHHhhccCCEEEE
Q 026861 131 EWEESADLMEVASKCDVVYQ 150 (232)
Q Consensus 131 ~i~~~~dleEAl~~ADVVYt 150 (232)
.+.+++|-.||+++||+|++
T Consensus 126 g~~vttddreavedad~iit 145 (343)
T COG4074 126 GIVVTTDDREAVEDADMIIT 145 (343)
T ss_pred eeEEecCcHhhhcCCCeEEE
Confidence 46678888999999999975
No 100
>PRK06487 glycerate dehydrogenase; Provisional
Probab=26.18 E-value=2e+02 Score=26.47 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=20.7
Q ss_pred HHHHhCCCEEEEE-----------cCHHHhhccCCEEEEcc
Q 026861 123 DYLTSQGVEWEES-----------ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~i~~~-----------~dleEAl~~ADVVYtdr 152 (232)
+.++..|.++... .+++|.++++|||..-.
T Consensus 165 ~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~l 205 (317)
T PRK06487 165 RLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHC 205 (317)
T ss_pred HHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECC
Confidence 4555667766433 25789999999997654
No 101
>PRK13243 glyoxylate reductase; Reviewed
Probab=25.62 E-value=1.2e+02 Score=28.10 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=24.8
Q ss_pred hcCCcccccccchHhHHHHHHhCCCEEEEEcCHHHhhccCCEEEEcc
Q 026861 106 QQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 106 ~~~~~~~l~v~~p~di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdr 152 (232)
++||+. +.+.-+..-.......|.. ..+++|.++++|+|..-.
T Consensus 170 ~~~G~~-V~~~d~~~~~~~~~~~~~~---~~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 170 KGFGMR-ILYYSRTRKPEAEKELGAE---YRPLEELLRESDFVSLHV 212 (333)
T ss_pred HHCCCE-EEEECCCCChhhHHHcCCE---ecCHHHHHhhCCEEEEeC
Confidence 467775 4443332111122334543 357899999999997665
No 102
>PRK06046 alanine dehydrogenase; Validated
Probab=25.61 E-value=1.9e+02 Score=26.66 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=36.7
Q ss_pred cCCcccHHHHHHHh--cCCcccccccchHh--HHHHHH----hCCCEEEEEcCHHHhhccCCEEEEcccc
Q 026861 93 IGKKFQLDDVIEAQ--QFDRDILNAIFEDD--IKDYLT----SQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 93 ~g~~~~~~~li~A~--~~~~~~l~v~~p~d--i~e~l~----~~G~~i~~~~dleEAl~~ADVVYtdrwq 154 (232)
.|-|.+....+.+. ..+.+.+.+.-+.. ..++++ ..|.++...+|.+++++ +|||.+.+-.
T Consensus 135 iG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 135 IGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPS 203 (326)
T ss_pred ECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCC
Confidence 37777766433332 23555445444422 122222 24777778899999997 9999988754
No 103
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Probab=25.42 E-value=90 Score=28.01 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=36.5
Q ss_pred HHHHhcCCcccccccchHhH---HHHHHhCCCE-----EEEEcCHHHhhccCCEEEEccc
Q 026861 102 VIEAQQFDRDILNAIFEDDI---KDYLTSQGVE-----WEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di---~e~l~~~G~~-----i~~~~dleEAl~~ADVVYtdrw 153 (232)
+..+..||++.|.++-|... .......|+. ..++++++|++++.+.||.+.-
T Consensus 22 aRa~~~fG~~~l~lv~p~~~~~~~a~~~a~GA~~~l~~a~i~~~l~eal~~~~~vvatt~ 81 (245)
T PRK15114 22 ARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNATIVDTLDEALAGCSLVVGTSA 81 (245)
T ss_pred HHHHHhcCCCEEEEeCCCCCCcCHHHHHcCCchhhcccCeEecCHHHHHhcCCEEEEEcC
Confidence 67788999998998776422 1122234432 3467899999999998888874
No 104
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=25.33 E-value=1.4e+02 Score=29.53 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=24.7
Q ss_pred HhcCCcccccccchHhHHHHHHhCCCEEEEEcCHHHhhccCCEEEEcc
Q 026861 105 AQQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 105 A~~~~~~~l~v~~p~di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdr 152 (232)
++.||+. +.+.=|..-.+.....|... . +++|.++++|+|..-.
T Consensus 159 l~~fG~~-V~~~d~~~~~~~~~~~g~~~--~-~l~ell~~aDiV~l~l 202 (526)
T PRK13581 159 AKAFGMK-VIAYDPYISPERAAQLGVEL--V-SLDELLARADFITLHT 202 (526)
T ss_pred HHhCCCE-EEEECCCCChhHHHhcCCEE--E-cHHHHHhhCCEEEEcc
Confidence 3456664 44333311112233455543 2 7899999999997654
No 105
>PRK06932 glycerate dehydrogenase; Provisional
Probab=24.72 E-value=2.3e+02 Score=26.12 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=13.8
Q ss_pred cCHHHhhccCCEEEEcc
Q 026861 136 ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 136 ~dleEAl~~ADVVYtdr 152 (232)
.+++|.++++|||..-.
T Consensus 189 ~~l~ell~~sDiv~l~~ 205 (314)
T PRK06932 189 TPFEEVLKQADIVTLHC 205 (314)
T ss_pred CCHHHHHHhCCEEEEcC
Confidence 36789999999998654
No 106
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.58 E-value=1.5e+02 Score=27.52 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=59.6
Q ss_pred eeeccccccccCCcccHH------------HHHHHhcCCcccccccchHh-------HHHHHHhCCCEEEEE----cCHH
Q 026861 83 VETQSTPSFTIGKKFQLD------------DVIEAQQFDRDILNAIFEDD-------IKDYLTSQGVEWEES----ADLM 139 (232)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~------------~li~A~~~~~~~l~v~~p~d-------i~e~l~~~G~~i~~~----~dle 139 (232)
-.+|.++-+|.|.=+.-+ .|++.-.+++.+-++++.+- +-.++...|++++++ .|+.
T Consensus 116 KDVDGl~p~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~ 195 (284)
T PRK14170 116 KDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLP 195 (284)
T ss_pred cCcccCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH
Confidence 367888888877532211 46766666677777777532 225666789998776 4678
Q ss_pred HhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCCC
Q 026861 140 EVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLP 193 (232)
Q Consensus 140 EAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpLP 193 (232)
+.++.||||++-. +. ..| ++.+.+ ++++++.-.+-
T Consensus 196 ~~~~~ADIvI~Av----G~-----------~~~-i~~~~v---k~GavVIDvGi 230 (284)
T PRK14170 196 QVAKEADILVVAT----GL-----------AKF-VKKDYI---KPGAIVIDVGM 230 (284)
T ss_pred HHHhhCCEEEEec----CC-----------cCc-cCHHHc---CCCCEEEEccC
Confidence 8999999998865 21 112 566654 46777766654
No 107
>PRK15076 alpha-galactosidase; Provisional
Probab=24.50 E-value=75 Score=30.84 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.1
Q ss_pred CEEEEEcCHHHhhccCCEEEEcc
Q 026861 130 VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 130 ~~i~~~~dleEAl~~ADVVYtdr 152 (232)
.+++.+.|+.+++++||+|+.+-
T Consensus 61 ~~i~~ttD~~eal~dADfVv~ti 83 (431)
T PRK15076 61 AKITATTDRREALQGADYVINAI 83 (431)
T ss_pred eEEEEECCHHHHhCCCCEEeEee
Confidence 57888999999999999998765
No 108
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.99 E-value=1.2e+02 Score=28.09 Aligned_cols=105 Identities=13% Similarity=0.197 Sum_probs=63.0
Q ss_pred cccccccccccc--------ceeeccccccccCCcccHH------------HHHHHhcCCcccccccchHh-------HH
Q 026861 70 QQLPLRNSIQCW--------AVETQSTPSFTIGKKFQLD------------DVIEAQQFDRDILNAIFEDD-------IK 122 (232)
Q Consensus 70 ~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~------------~li~A~~~~~~~l~v~~p~d-------i~ 122 (232)
-++||-.-+... .-.+|.++-.|.|.=+.=. .|++...++..+-++++.+- +-
T Consensus 96 vq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla 175 (284)
T PRK14190 96 VQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMMLGQDTFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVG 175 (284)
T ss_pred EeCCCCCCCCHHHHHhcCCccccccccCHhhHHHHhcCCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHH
Confidence 456665444322 2356777777765422111 46666566666667766531 12
Q ss_pred HHHHhCCCEEEEE----cCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCCC
Q 026861 123 DYLTSQGVEWEES----ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLP 193 (232)
Q Consensus 123 e~l~~~G~~i~~~----~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpLP 193 (232)
.++...|++++++ .|+.+.+++||+|+.-. +.. .-++.+.+ ++++++.-.+-
T Consensus 176 ~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~Av----G~p------------~~i~~~~i---k~gavVIDvGi 231 (284)
T PRK14190 176 QLLLNENATVTYCHSKTKNLAELTKQADILIVAV----GKP------------KLITADMV---KEGAVVIDVGV 231 (284)
T ss_pred HHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEec----CCC------------CcCCHHHc---CCCCEEEEeec
Confidence 4566788888776 46678999999999875 111 12666664 56777766654
No 109
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=23.94 E-value=1.1e+02 Score=27.07 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=35.8
Q ss_pred HHHHhcCCcccccccchHhH--HH-HHHhCCC-----EEEEEcCHHHhhccCCEEEEcc
Q 026861 102 VIEAQQFDRDILNAIFEDDI--KD-YLTSQGV-----EWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di--~e-~l~~~G~-----~i~~~~dleEAl~~ADVVYtdr 152 (232)
+..+..||++.|.++-|... .+ .....|+ .+++++|+++++++.+.|+.+.
T Consensus 21 aR~~~~fG~~~l~lv~p~~~~~~~a~~~a~ga~~~l~~~~v~~~l~eal~~~~~vv~tt 79 (233)
T TIGR00050 21 ARAMKNMGLTELCLVNPKSHLEEEAYALAAGARDILDNAKVVDDLDEALDDCDLVVGTS 79 (233)
T ss_pred HHHHHhCCCCEEEEeCCCcCCCHHHHHHhCChHHhhccCEEECCHHHHHhcCCEEEEEC
Confidence 66778899998998887542 11 1123443 2356789999999999888776
No 110
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=23.52 E-value=1.6e+02 Score=28.67 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=12.7
Q ss_pred CHHHhhccCCEEEEcc
Q 026861 137 DLMEVASKCDVVYQTR 152 (232)
Q Consensus 137 dleEAl~~ADVVYtdr 152 (232)
+++|+++++|||++.+
T Consensus 243 ~leeal~~aDVVItaT 258 (406)
T TIGR00936 243 TMEEAAKIGDIFITAT 258 (406)
T ss_pred CHHHHHhcCCEEEECC
Confidence 5678899999998754
No 111
>PRK08605 D-lactate dehydrogenase; Validated
Probab=23.10 E-value=1.1e+02 Score=28.30 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=31.6
Q ss_pred EEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCC
Q 026861 134 ESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPL 192 (232)
Q Consensus 134 ~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpL 192 (232)
..++++++++++|+|..-.=-.. ....-++.+.++.+++++++....
T Consensus 190 ~~~~l~ell~~aDvIvl~lP~t~------------~t~~li~~~~l~~mk~gailIN~s 236 (332)
T PRK08605 190 YKDTIEEAVEGADIVTLHMPATK------------YNHYLFNADLFKHFKKGAVFVNCA 236 (332)
T ss_pred ccCCHHHHHHhCCEEEEeCCCCc------------chhhhcCHHHHhcCCCCcEEEECC
Confidence 44689999999999987652111 011345677777788888877764
No 112
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=23.10 E-value=1.2e+02 Score=28.41 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=43.0
Q ss_pred HHhcCCcccccccchHhHHHHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcC
Q 026861 104 EAQQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVME 183 (232)
Q Consensus 104 ~A~~~~~~~l~v~~p~di~e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak 183 (232)
.++.||+. +-..-+..-++..+..+.+ ..+ ++|.++++|||....=-. . -..+-||.+.++..|
T Consensus 164 r~~~Fgm~-v~y~~~~~~~~~~~~~~~~--y~~-l~ell~~sDii~l~~Plt----~--------~T~hLin~~~l~~mk 227 (324)
T COG1052 164 RLKGFGMK-VLYYDRSPNPEAEKELGAR--YVD-LDELLAESDIISLHCPLT----P--------ETRHLINAEELAKMK 227 (324)
T ss_pred HHhcCCCE-EEEECCCCChHHHhhcCce--ecc-HHHHHHhCCEEEEeCCCC----h--------HHhhhcCHHHHHhCC
Confidence 34477776 4443333223332334455 334 999999999997654211 0 123568888888888
Q ss_pred CCcEEeCC
Q 026861 184 KHAVVLHP 191 (232)
Q Consensus 184 ~daivMHp 191 (232)
+++++.=.
T Consensus 228 ~ga~lVNt 235 (324)
T COG1052 228 PGAILVNT 235 (324)
T ss_pred CCeEEEEC
Confidence 88887655
No 113
>PLN02285 methionyl-tRNA formyltransferase
Probab=23.05 E-value=1.1e+02 Score=28.58 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=33.0
Q ss_pred HHHHHHhCCCEEEEE---c-----CHHHhhc--cCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeC
Q 026861 121 IKDYLTSQGVEWEES---A-----DLMEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLH 190 (232)
Q Consensus 121 i~e~l~~~G~~i~~~---~-----dleEAl~--~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMH 190 (232)
+++++.+.|+...+. . +..+.++ ++|++++-.| .+.+.+++++..+-.++-+|
T Consensus 60 v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~-----------------~~ilp~~~l~~~~~g~iNiH 122 (334)
T PLN02285 60 VAQLALDRGFPPDLIFTPEKAGEEDFLSALRELQPDLCITAAY-----------------GNILPQKFLDIPKLGTVNIH 122 (334)
T ss_pred HHHHHHHcCCCcceecCccccCCHHHHHHHHhhCCCEEEhhHh-----------------hhhcCHHHHhhccCCEEEEe
Confidence 567888888873211 1 1112222 3666665543 24577778877777888899
Q ss_pred CC
Q 026861 191 PL 192 (232)
Q Consensus 191 pL 192 (232)
|-
T Consensus 123 pS 124 (334)
T PLN02285 123 PS 124 (334)
T ss_pred cc
Confidence 83
No 114
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.38 E-value=2.2e+02 Score=26.12 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=48.1
Q ss_pred ccceeeccccccccCC------cccH--H----HHHHHhcCCcccccccchH--hH-----HHHHHhCCCEEEEEc----
Q 026861 80 CWAVETQSTPSFTIGK------KFQL--D----DVIEAQQFDRDILNAIFED--DI-----KDYLTSQGVEWEESA---- 136 (232)
Q Consensus 80 ~~~~~~~~~~~~~~g~------~~~~--~----~li~A~~~~~~~l~v~~p~--di-----~e~l~~~G~~i~~~~---- 136 (232)
..+..|+.++.+|.|. .+.- + .+++...++..+-++++-+ .+ -..+...|+++++++
T Consensus 115 ~~aKDVdg~n~~n~G~l~~~~~~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~ 194 (283)
T PRK14192 115 SLAKDVDGVTCLGFGRMAMGEAAYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ 194 (283)
T ss_pred CHHHhcCCCCccccCccccCCCcccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch
Confidence 5677889999888765 2211 1 2444444556666666642 32 245567888888764
Q ss_pred CHHHhhccCCEEEEcc
Q 026861 137 DLMEVASKCDVVYQTR 152 (232)
Q Consensus 137 dleEAl~~ADVVYtdr 152 (232)
++.+.+++||+|+..+
T Consensus 195 ~L~~~~~~aDIvI~At 210 (283)
T PRK14192 195 NLPELVKQADIIVGAV 210 (283)
T ss_pred hHHHHhccCCEEEEcc
Confidence 4677889999999887
No 115
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=22.04 E-value=1.7e+02 Score=27.06 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=13.9
Q ss_pred cCHHHhhccCCEEEEcc
Q 026861 136 ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 136 ~dleEAl~~ADVVYtdr 152 (232)
.+++++++++|||...-
T Consensus 182 ~~l~e~l~~aDvvv~~l 198 (312)
T PRK15469 182 EELSAFLSQTRVLINLL 198 (312)
T ss_pred ccHHHHHhcCCEEEECC
Confidence 36789999999998765
No 116
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=21.81 E-value=2.2e+02 Score=27.71 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=26.9
Q ss_pred HHHHhcCCcccccccchHhH-HHHHHhCCCEEEEEcCHHHhhccCCEEEEcc
Q 026861 102 VIEAQQFDRDILNAIFEDDI-KDYLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 102 li~A~~~~~~~l~v~~p~di-~e~l~~~G~~i~~~~dleEAl~~ADVVYtdr 152 (232)
...|+.+|.. +.++=+... .+.+...|..+ .+++++++++|||+..+
T Consensus 218 a~~ak~~Ga~-ViV~d~d~~R~~~A~~~G~~~---~~~~e~v~~aDVVI~at 265 (413)
T cd00401 218 AQSLRGQGAR-VIVTEVDPICALQAAMEGYEV---MTMEEAVKEGDIFVTTT 265 (413)
T ss_pred HHHHHHCCCE-EEEEECChhhHHHHHhcCCEE---ccHHHHHcCCCEEEECC
Confidence 3445566663 444322222 34455667643 24578899999998754
No 117
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=21.66 E-value=2.3e+02 Score=28.60 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=38.9
Q ss_pred hHHHHHHhCCCEEEEEcCHH-----Hhhc--cCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCC
Q 026861 120 DIKDYLTSQGVEWEESADLM-----EVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPL 192 (232)
Q Consensus 120 di~e~l~~~G~~i~~~~dle-----EAl~--~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpL 192 (232)
.+.+++.+.|+.+....++. +.++ +.|+++.-.| .+.+.+++++..+-.++-+||-
T Consensus 44 ~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~~~~-----------------~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 44 SVARLAAELGIPVYAPEDVNHPLWVERIRELAPDVIFSFYY-----------------RNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEEccc-----------------cccCCHHHHhhcCCCEEEEeCC
Confidence 46788889999876555431 2232 4788776554 2457778888777788999985
Q ss_pred C
Q 026861 193 P 193 (232)
Q Consensus 193 P 193 (232)
+
T Consensus 107 l 107 (660)
T PRK08125 107 L 107 (660)
T ss_pred c
Confidence 4
No 118
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=21.25 E-value=1.7e+02 Score=27.93 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=41.4
Q ss_pred cccHHHHHHHhcCCcccccccchHhHHHHHHhCCCEEEEE---cCHHHhhcc-CCEEEEccc
Q 026861 96 KFQLDDVIEAQQFDRDILNAIFEDDIKDYLTSQGVEWEES---ADLMEVASK-CDVVYQTRI 153 (232)
Q Consensus 96 ~~~~~~li~A~~~~~~~l~v~~p~di~e~l~~~G~~i~~~---~dleEAl~~-ADVVYtdrw 153 (232)
|.-..-+.-|+.+|.+-+.+...++-.+.+++.|+...+. .|..+++++ +|+++-+.-
T Consensus 177 GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 177 GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 4444458888888988566666777778889999987666 334455555 899988764
No 119
>PRK07574 formate dehydrogenase; Provisional
Probab=21.00 E-value=1.5e+02 Score=28.43 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=15.5
Q ss_pred EEcCHHHhhccCCEEEEcc
Q 026861 134 ESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 134 ~~~dleEAl~~ADVVYtdr 152 (232)
...+++|+++++|||..-.
T Consensus 238 ~~~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 238 YHVSFDSLVSVCDVVTIHC 256 (385)
T ss_pred ecCCHHHHhhcCCEEEEcC
Confidence 4568999999999997655
No 120
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.97 E-value=1.8e+02 Score=27.03 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=68.7
Q ss_pred cccccccccccc--------ceeeccccccccCCccc----HH--------HHHHHhcCCcccccccchHh-------HH
Q 026861 70 QQLPLRNSIQCW--------AVETQSTPSFTIGKKFQ----LD--------DVIEAQQFDRDILNAIFEDD-------IK 122 (232)
Q Consensus 70 ~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~----~~--------~li~A~~~~~~~l~v~~p~d-------i~ 122 (232)
-++||-.-+... .-.+|.++-.|.|.=+. +. .|++.-..++.+-++++-+- +-
T Consensus 96 vqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla 175 (284)
T PRK14193 96 VQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLNEPAPLPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIG 175 (284)
T ss_pred EeCCCCCCCCHHHHHhcCCcccCccCCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHH
Confidence 466765444322 23578888787773321 11 46666666676777776531 12
Q ss_pred HHHHh--CCCEEEEEc----CHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcCCCcEEeCCCC-C-
Q 026861 123 DYLTS--QGVEWEESA----DLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLP-R- 194 (232)
Q Consensus 123 e~l~~--~G~~i~~~~----dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak~daivMHpLP-R- 194 (232)
.++.. .|+++++++ |+.+.+++||+|+.-. +.. .| |+.+.+ ++++++.-.+- +
T Consensus 176 ~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~Av----Gkp-----------~~-i~~~~i---k~GavVIDvGin~~ 236 (284)
T PRK14193 176 LLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAA----GVA-----------HL-VTADMV---KPGAAVLDVGVSRA 236 (284)
T ss_pred HHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEec----CCc-----------Cc-cCHHHc---CCCCEEEEcccccc
Confidence 44544 688888764 6788999999998765 211 12 566554 56777776665 3
Q ss_pred -Ccccccccc
Q 026861 195 -LDEITVDVD 203 (232)
Q Consensus 195 -g~EIt~eV~ 203 (232)
+..+-.||+
T Consensus 237 ~~gkl~GDvd 246 (284)
T PRK14193 237 GDGKLVGDVH 246 (284)
T ss_pred CCCcEEeecC
Confidence 223555555
No 121
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=20.80 E-value=49 Score=31.20 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=24.6
Q ss_pred ccccccccCCcccHH------H---HHHHh-cC--CcccccccchHhH
Q 026861 86 QSTPSFTIGKKFQLD------D---VIEAQ-QF--DRDILNAIFEDDI 121 (232)
Q Consensus 86 ~~~~~~~~g~~~~~~------~---li~A~-~~--~~~~l~v~~p~di 121 (232)
-.+||||+|+|-+.| | |.+-. .+ +.++++|++.+|.
T Consensus 121 ~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~ 168 (338)
T PRK08192 121 SRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDL 168 (338)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcC
Confidence 359999999975544 4 33321 12 3788999999886
No 122
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=20.62 E-value=1.5e+02 Score=29.15 Aligned_cols=60 Identities=22% Similarity=0.260 Sum_probs=42.4
Q ss_pred HHHHhCCCEEEEEcCHHHhhccCCEEEEccccccccCCCchHHHHhhcCCccCHHHHhhcC---CC-cEEeCCCCCCcc
Q 026861 123 DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVME---KH-AVVLHPLPRLDE 197 (232)
Q Consensus 123 e~l~~~G~~i~~~~dleEAl~~ADVVYtdrwq~Er~~~~~~~~~~~~~~Y~Vt~elL~~ak---~d-aivMHpLPRg~E 197 (232)
+.+++.|+.+.-.+++.+.+.++|||+.-+= ...|.|+.+++..+- ++ .+|==-.||++|
T Consensus 217 ~La~~~~~~~~~l~el~~~l~~~DvVissTs---------------a~~~ii~~~~ve~a~~~r~~~livDiavPRdie 280 (414)
T COG0373 217 ELAKKLGAEAVALEELLEALAEADVVISSTS---------------APHPIITREMVERALKIRKRLLIVDIAVPRDVE 280 (414)
T ss_pred HHHHHhCCeeecHHHHHHhhhhCCEEEEecC---------------CCccccCHHHHHHHHhcccCeEEEEecCCCCCC
Confidence 5667888888778899999999999998761 134778888877662 23 344445577654
No 123
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.44 E-value=1.8e+02 Score=27.02 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=54.0
Q ss_pred cccccccccccc--------ceeeccccccccCCccc----HH--------HHHHHhcCCcccccccchHh-------HH
Q 026861 70 QQLPLRNSIQCW--------AVETQSTPSFTIGKKFQ----LD--------DVIEAQQFDRDILNAIFEDD-------IK 122 (232)
Q Consensus 70 ~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~----~~--------~li~A~~~~~~~l~v~~p~d-------i~ 122 (232)
-++||-.-+... .-.+|.++-.|.|.=+. +- .|++...+++++-++++-+- +-
T Consensus 93 vqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla 172 (287)
T PRK14173 93 VQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMGGEALEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLA 172 (287)
T ss_pred EeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcCCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHH
Confidence 466775444332 23577788777773321 11 47776666777777777532 12
Q ss_pred HHHHhCCCEEEEE----cCHHHhhccCCEEEEcc
Q 026861 123 DYLTSQGVEWEES----ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~i~~~----~dleEAl~~ADVVYtdr 152 (232)
.++...|++++++ .|+++..++||+|+.-.
T Consensus 173 ~lL~~~~aTVtichs~T~~l~~~~~~ADIvIsAv 206 (287)
T PRK14173 173 ALLLREDATVTLAHSKTQDLPAVTRRADVLVVAV 206 (287)
T ss_pred HHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEec
Confidence 5666788998775 56788999999998765
No 124
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.40 E-value=1.9e+02 Score=26.87 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=60.3
Q ss_pred chhhhhhccccchhhhhh----cccccccccccc--------ceeeccccccccCCccc----H-----H---HHHHHhc
Q 026861 52 SKSRLLLSHEKSVKWKQT----QQLPLRNSIQCW--------AVETQSTPSFTIGKKFQ----L-----D---DVIEAQQ 107 (232)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~----~-----~---~li~A~~ 107 (232)
.+..++-..+++++.... -++||-.-+... .-.+|.++-+|.|.=+. + . .+++...
T Consensus 80 ~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~PcTp~av~~ll~~~~ 159 (287)
T PRK14176 80 TQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIGDEGLVPCTPHGVIRALEEYG 159 (287)
T ss_pred CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcCCCCCCCCcHHHHHHHHHHcC
Confidence 344443444455444332 567876555433 23578888888773221 1 1 3666555
Q ss_pred CCcccccccchH-------hHHHHHHhCCCEEEEEc----CHHHhhccCCEEEEc
Q 026861 108 FDRDILNAIFED-------DIKDYLTSQGVEWEESA----DLMEVASKCDVVYQT 151 (232)
Q Consensus 108 ~~~~~l~v~~p~-------di~e~l~~~G~~i~~~~----dleEAl~~ADVVYtd 151 (232)
.+.++-++++-+ -+-.++...|+++++++ |+.+..++||+|+.-
T Consensus 160 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~A 214 (287)
T PRK14176 160 VDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVA 214 (287)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEc
Confidence 566677777653 12356677899987754 678899999999864
No 125
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=20.06 E-value=3.4e+02 Score=24.26 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=20.1
Q ss_pred HHHHhCCCEEEEEc---CHHHhhccCCEEEEcc
Q 026861 123 DYLTSQGVEWEESA---DLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~i~~~~---dleEAl~~ADVVYtdr 152 (232)
+.+++.|.++...+ ++.+++.+||+||...
T Consensus 55 ~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~G 87 (233)
T PRK05282 55 EALAPLGIEVTGIHRVADPVAAIENAEAIFVGG 87 (233)
T ss_pred HHHHHCCCEEEEeccchhhHHHHhcCCEEEECC
Confidence 34456677654443 3456799999999876
Done!