RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 026861
(232 letters)
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P;
1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB:
1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A*
1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A*
2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Length = 310
Score = 174 bits (444), Expect = 6e-54
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNV 178
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ +
Sbjct: 196 QYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDP--SEYANVKAQFVLRASD 253
Query: 179 LQVMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
L + + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 254 LHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor
complex, transferase; HET: PAL; 1.80A {Pyrococcus
abyssi} SCOP: c.78.1.1 c.78.1.1
Length = 308
Score = 171 bits (437), Expect = 7e-53
Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNV 178
I + L +G++ E+ L +V K DV+Y TRIQ+ERF + + Y + +G Y V+ V
Sbjct: 196 RHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQE-YLKVKGSYQVNLKV 254
Query: 179 LQVMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
L+ + ++HPLPR+DEI +VD A YFRQ NG+ +RMALL L+L
Sbjct: 255 LEKAKDELRIMHPLPRVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVL 305
Score = 27.1 bits (61), Expect = 5.6
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 96 KFQLDDVIEAQQFDRDILNAIFE--DDIKDYLTSQGV 130
++ DVI + F ++ + + + ++ L +G
Sbjct: 2 DWKGRDVISIRDFSKEDIETVLATAERLERELKEKGQ 38
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate
transcarbamoylase, pyrimidine biosynthesis
thermostability, substrate channeling; 2.50A
{Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Length = 306
Score = 165 bits (420), Expect = 2e-50
Identities = 43/113 (38%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNV 178
DI + L ++ +++ E L ++ DV+Y TRIQ+ERF + + YE+ +G Y + +
Sbjct: 193 KDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNE-YEKVKGSYKIKREY 251
Query: 179 LQVMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
+ K +++HPLPR+DEI DVD P+A YF+Q+ G+ +RMA+LK L+
Sbjct: 252 V--EGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIED 302
Score = 26.3 bits (59), Expect = 9.1
Identities = 3/34 (8%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 99 LDDVIEAQQFDRDILNAIFE--DDIKDYLTSQGV 130
+ +I + ++ + I + +++ L ++
Sbjct: 1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRP 34
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius}
SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Length = 299
Score = 162 bits (413), Expect = 2e-49
Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNV 178
+I D L +E + EV ++ DV+Y TRIQ+ERF + + YE+ +G YIV ++
Sbjct: 191 KEILDEL---NYPVKEVENPFEVINEVDVLYVTRIQKERFVDEME-YEKIKGSYIVSLDL 246
Query: 179 LQVMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
M+K +++LHPLPR++EI VD +A YF QA G+ +RM++L +
Sbjct: 247 ANKMKKDSIILHPLPRVNEIDRKVDKTTKAKYFEQASYGVPVRMSILTKIY 297
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase,
carbamoyl phosphate, transferas catalytic cycle; 2.10A
{Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Length = 304
Score = 80.6 bits (200), Expect = 3e-18
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 137 DLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLP--R 194
+ E DVV RIQ ER KY + + M++HA+++HP P R
Sbjct: 196 SMDEAVESSDVVMLLRIQNERHQSAVSQEGYLN-KYGLTVERAERMKRHAIIMHPAPVNR 254
Query: 195 LDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
EI + ++ F+Q KNG++IRMA+++ L
Sbjct: 255 GVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQRALQT 291
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal
cavity, hydrolase, metal-B pyrimidine biosynthesis,
hydrolase-transferase; HET: FLC; 2.30A {Aquifex
aeolicus}
Length = 291
Score = 65.6 bits (161), Expect = 5e-13
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 133 EESADLMEVASKCDVVYQTRIQRERFGERTDLY---EEARGKYIVDQNVLQVMEKHAVVL 189
+ D+ + DVV R+Q+ER E + ++ + + + + + +
Sbjct: 194 DVFDDVDKGIDWADVVIWLRLQKERQKE--NYIPSESSYFKQFGLTKERFEKV---KLYM 248
Query: 190 HPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
HP P R +I ++ ++ Q KNG+ +R A+ K L
Sbjct: 249 HPGPVNRNVDIDHELVYTEKSLIQEQVKNGIPVRKAIYKFLW 290
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics,
niaid, national institute of allergy AN infectious
diseases; 2.10A {Burkholderia thailandensis}
Length = 309
Score = 48.3 bits (116), Expect = 6e-07
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 137 DLMEVASKCDVVY--------QTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVV 188
D E D+V R + A + VD+ ++ A+
Sbjct: 209 DPNEACKGADLVTTDVWTSMGFEAENEAR--------KRAFADWCVDEEMMSHANSDALF 260
Query: 189 LHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
+H LP R +E+T V P++ + +A+N L+++ AL++ LL+G
Sbjct: 261 MHCLPAHRGEEVTAGVIDGPQSVVWDEAENRLHVQKALMEFLLLG 305
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
3.25A {Bacillus anthracis}
Length = 340
Score = 48.4 bits (116), Expect = 6e-07
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 25/129 (19%)
Query: 114 NAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLY-------E 166
N G E E + ++ D +Y TD++ E
Sbjct: 217 NEEIVKKALAIAKETGAEIEILHNPELAVNEADFIY------------TDVWMSMGQEGE 264
Query: 167 EARGK----YIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYI 220
E + Y +++ +++ ++ LH LP R +E+T ++ P++ F QA N L+
Sbjct: 265 EEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDGPQSIVFEQAGNRLHA 324
Query: 221 RMALLKLLL 229
+ ALL L
Sbjct: 325 QKALLVSLF 333
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid,
rossman fold; 2.70A {Campylobacter jejuni subsp}
Length = 307
Score = 47.5 bits (114), Expect = 1e-06
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 122 KDYLTSQGVEWEESADLMEVASKCDVVY--------QTRIQRERFGERTDLYEEARGKYI 173
G + D E DVV + + + + ++
Sbjct: 192 MKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERK--------IKEFEGFM 243
Query: 174 VDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+D+ + V K A++LH LP R E++ ++ F +A+N LY+ ALL L
Sbjct: 244 IDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLD 301
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics,
NYSGXRC, target 9454P, operon, amino-acid biosynthesis,
ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Length = 323
Score = 46.8 bits (112), Expect = 2e-06
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 122 KDYLTSQGVEWEESADLMEVASKCDVVY--------QTRIQRERFGERTDLYEEARGKYI 173
+ G E + D E A ++Y Q + R + +Y
Sbjct: 203 SEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHR--------LQLFEQYQ 254
Query: 174 VDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
++ +L A+VLH LP R +EIT +V PR+ + +A+N L+ + A+L L+ G
Sbjct: 255 INAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMGG 314
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus}
Length = 301
Score = 46.0 bits (110), Expect = 3e-06
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 137 DLMEVASKCDVVY--------QTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVV 188
D E A +Y Q + +R + V+ +L+++ V
Sbjct: 206 DPKEAALGAHALYTDVWTSMGQEAEREKR--------LRDFQGFQVNGELLKLLRPEGVF 257
Query: 189 LHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
LH LP +E T + PR+ F QA+N L+ A+L LL
Sbjct: 258 LHCLPAHYGEETTEEAVHGPRSRVFDQAENRLHTAKAVLLTLL 300
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography,
ornithine carbamyoltransferase, carbamoyl phosphate, L-
norvaline; 2.20A {Mycobacterium tuberculosis} PDB:
2p2g_A
Length = 307
Score = 46.0 bits (110), Expect = 3e-06
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 122 KDYLTSQGVEWEESADLMEVASKCDVVY--------QTRIQRERFGERTDLYEEARGKYI 173
+ G +AD A+ DV+ Q +R + +
Sbjct: 195 ERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDR--------VKPFRPFQ 246
Query: 174 VDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
++ +L + + A+VLH LP R DEIT V P +A + +A+N L+ + ALL LL
Sbjct: 247 LNSRLLALADSDAIVLHCLPAHRGDEITDAVMDGPASAVWDEAENRLHAQKALLVWLL 304
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A
{Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB:
1a1s_A
Length = 315
Score = 46.0 bits (110), Expect = 4e-06
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 122 KDYLTSQGVEWEESADLMEVASKCDVVY--------QTRIQRERFGERTDLYEEARGKYI 173
+ G +E D ++ DV+Y Q ER + +
Sbjct: 201 EQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEER--------RKIFRPFQ 252
Query: 174 VDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
V++++++ + + +H LP R +E+T DV P + + QA+N L+ + A+L L++ G
Sbjct: 253 VNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVMGG 312
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET:
AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A
1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A*
3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A*
3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Length = 359
Score = 45.0 bits (107), Expect = 7e-06
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 14/126 (11%)
Query: 113 LNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVY-------QTRIQRERFGERTDLY 165
L+ + D + G + S D+ + DVVY E D Y
Sbjct: 234 LDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQY 293
Query: 166 EEARGKYIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMA 223
+ +IVD+ + + + V H LP R + T V P +A+N L+++ A
Sbjct: 294 Q----HFIVDERKMA-LTNNGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKA 348
Query: 224 LLKLLL 229
++ L+
Sbjct: 349 IMAALV 354
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A
{Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A
1fvo_A 1c9y_A* 1fb5_A
Length = 321
Score = 44.8 bits (107), Expect = 8e-06
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRI-----QRERFGERTDLYEEARGKYI 173
+ Y G + + D +E A +V+ T + E +R ++ Y
Sbjct: 198 KLAEQYAKENGTKLLLTNDPLEAAHGGNVLI-TDTWISMGREEEKKKRLQAFQ----GYQ 252
Query: 174 VDQNVLQVMEKHAVVLHPLP-RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
V +V LH LP + +E+ +V PR+ F +A+N + MA++ LL
Sbjct: 253 VTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLL 309
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia
coli}
Length = 399
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 17/110 (15%)
Query: 131 EWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLQV-MEKHAVVL 189
EE +L+ + + + + D + + ++++ + A+ +
Sbjct: 280 VMEERTELLRANDHEGLKALEKQCLAQNAQHKD--------WHCTEEMMELTRDGEALYM 331
Query: 190 HPLP--------RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
H LP + E+T V R A +++A YI A++
Sbjct: 332 HCLPADISGVSCKEGEVTEGVFEKYRIATYKEASWKPYIIAAMILSRKYA 381
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase;
2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1
PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Length = 324
Score = 42.3 bits (100), Expect = 6e-05
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 137 DLMEVASKCDVVYQ---TRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLP 193
D M+ D +Y + +G+ + V + + +A +H LP
Sbjct: 222 DQMKAFEGADFIYAKNWAAYTGDNYGQILSTDR----NWTVGDRQMA-VTNNAYFMHCLP 276
Query: 194 --RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
R +T DV P++ +A N +LK LL
Sbjct: 277 VRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLL 314
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.80A {Coccidioides immitis}
Length = 353
Score = 41.8 bits (99), Expect = 8e-05
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 172 YIVDQNVLQVME--KHAVVLHPLPR-LDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228
+ V + + ++ +H LPR +E++ +V R+ F +A+N L+ ++ L+
Sbjct: 286 FKVTSELAKRGGAKENWKFMHCLPRHPEEVSDEVFYSERSLVFPEAENRLWAAISALEAF 345
Query: 229 LVG 231
+V
Sbjct: 346 VVN 348
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase,
arginine degradation pathway, giardia lamblia, drug
target; 2.00A {Giardia intestinalis}
Length = 328
Score = 41.4 bits (98), Expect = 1e-04
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 137 DLMEVASKCDVVY--------QTRIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVV 188
D + DVVY T+ Q+E R + + VD V+ V K ++
Sbjct: 227 DCKKGCEGVDVVYTDSWMSYHITKEQKE---ARLKVLT----PFQVDDAVMAVTSKRSIF 279
Query: 189 LHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
++ LP R +E T V P++ + +A N L+ MA+L L
Sbjct: 280 MNCLPATRGEEQTASVIDGPKSVCYDEAGNRLHSAMAVLDFFL 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 1e-04
Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 50/203 (24%)
Query: 21 INCKKELMFSYSSLVDKLPVHRNSFSLSADFSKSRLLLSHEKSV----KW--KQTQQL-- 72
++CK L + + D L + S + L+ ++ K+ + Q L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPR 320
Query: 73 ------PLRNSIQCWAV--ETQSTPSFTIGKKFQLDDVIEAQQFDRDILN---------- 114
P R SI + +T K D + + ++L
Sbjct: 321 EVLTTNPRRLSI-IAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 115 -AIFEDDIKDYLTSQ--GVEWEES--ADLMEVASKCDVVYQTRIQRERFGERT---DLYE 166
++F + + + W + +D+M V +K + ++++ +Y
Sbjct: 378 LSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKL--HKYSLVEKQPKESTISIPSIYL 433
Query: 167 EARGKYIVDQNVLQVMEKHAVVL 189
E + K + H ++
Sbjct: 434 ELKVK------LENEYALHRSIV 450
Score = 37.5 bits (86), Expect = 0.003
Identities = 33/175 (18%), Positives = 51/175 (29%), Gaps = 78/175 (44%)
Query: 98 QLD-DVIEAQQFDRDILNAIFEDDIKDYLTSQGVEWEESADLM-EVASK--CDVVYQ--T 151
+D + E Q +DIL+ +FED D + V+ D+ + SK D +
Sbjct: 6 HMDFETGEHQYQYKDILS-VFEDAFVDNFDCKDVQ-----DMPKSILSKEEIDHIIMSKD 59
Query: 152 RIQR----------------ERFGE-----------------------RTDLYEEARGKY 172
+ ++F E T +Y E R +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 173 IVDQNVLQVMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKL 227
N QV K+ V RL +R ALL+L
Sbjct: 120 ---YNDNQVFAKYNV-----SRLQPYLK-------------------LRQALLEL 147
Score = 29.4 bits (65), Expect = 1.1
Identities = 38/273 (13%), Positives = 76/273 (27%), Gaps = 83/273 (30%)
Query: 12 NKSSFAPRVINCKKELMFSYSSLVDKLPVHRNSFSLSADFSKSRLLLSHEKSVKW----- 66
+ S R+ +++ +++ + + K V R + K R L + K
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-----PYLKLRQALLELRPAKNVLIDG 157
Query: 67 -----KQTQQLPLRNSIQCWAVETQSTPSF-----TIGKKFQLDDVIEAQQ-----FDRD 111
K + + C + + Q F + + V+E Q D +
Sbjct: 158 VLGSGKTW----VALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 112 ILNAIFE--------DDIKDYLTSQGVEWEESADLM---EVASK---------CDVVYQT 151
+ I+ L L+ V + C ++ T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 152 RIQRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLHPLPRLDE--------ITVDVD 203
RF + TD A +I ++ H++ L P DE +
Sbjct: 273 -----RFKQVTDFLSAATTTHI-------SLDHHSMTLTP----DEVKSLLLKYLDCRPQ 316
Query: 204 ADPRAAYFRQAKNG--LYIRM--ALLKLLLVGW 232
P R+ + + ++ L W
Sbjct: 317 DLP-----REVLTTNPRRLSIIAESIRDGLATW 344
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural
genomics, protein structure initiative, PSI, joint
center for structu genomics; 2.25A {Thermotoga maritima}
SCOP: c.78.1.1 c.78.1.1
Length = 325
Score = 41.0 bits (97), Expect = 1e-04
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 137 DLMEVASKCDVVYQTRI-----QRERFGERTDLYEEARGKYIVDQNVLQVMEK-HAVVLH 190
+L E + DVVY T + + ++ ER L + Y V++ V+++ K + +H
Sbjct: 229 NLEEALAGADVVY-TDVWASMGEEDKEKERMALLK----PYQVNERVMEMTGKSETIFMH 283
Query: 191 PLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230
LP + E+T +V ++ + +A+N + A++ L+
Sbjct: 284 CLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATLL 325
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A
{Enterococcus faecalis}
Length = 418
Score = 39.7 bits (93), Expect = 4e-04
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 28/123 (22%)
Query: 137 DLMEVASKCDVVY------------QTRIQRERFGERTDLYEEARGK-------YIVDQN 177
+ E DVVY +T + D E+ + +
Sbjct: 256 SMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEE 315
Query: 178 VLQV-MEKHAVVLHPLP--------RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228
+++ + A+ +H LP E+ V R +++A Y+ A++ L
Sbjct: 316 LMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKEASYKPYVIAAMIFLS 375
Query: 229 LVG 231
V
Sbjct: 376 KVK 378
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO,
delta-N-(phosphonoacetyl)-L- ornithine, agmatine
deiminase route, agmatine catabolism; HET: PAO PGE;
1.59A {Enterococcus faecalis}
Length = 339
Score = 39.1 bits (92), Expect = 6e-04
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 171 KYIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228
KY V+Q ++ + +H LP R +E+T +V + F +A+N L LL L
Sbjct: 271 KYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTSIRGLLVYL 330
Query: 229 L 229
+
Sbjct: 331 M 331
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase
route; HET: PAO; 2.00A {Enterococcus faecalis} PDB:
4a8h_A* 3txx_A
Length = 355
Score = 38.7 bits (91), Expect = 8e-04
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 171 KYIVDQNVLQVMEKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228
KY V+Q ++ + +H LP R +E+T +V + F +A+N L LL L
Sbjct: 249 KYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTSIRGLLVYL 308
Query: 229 L 229
+
Sbjct: 309 M 309
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.007
Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 53/184 (28%)
Query: 54 SR-LLLSHEKSVKWKQTQQLPLRNSIQC-WAVETQSTPSFTIGKKFQLDDVIEAQQFDRD 111
+R L LSH S++ V T S + QL + QF
Sbjct: 6 TRPLTLSH---------------GSLEHVLLVPTASFFIAS-----QLQE-----QF-NK 39
Query: 112 ILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVY----QTRIQRERFGERTDLYEE 167
IL E D +E E+ K + + ++ + G+ +
Sbjct: 40 ILPEPTEGFAAD---------DEPTTPAELVGK----FLGYVSSLVEPSKVGQFDQVLNL 86
Query: 168 ARGKYIVDQNVLQVMEKHAVVLHPLPRLDEITVDVDADPRAAYF--RQAKNGLYIRM--- 222
++ + L+ + HA+ L + ++ T+ + Y R + +
Sbjct: 87 CLTEF--ENCYLEGNDIHALAAK-LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 223 ALLK 226
AL +
Sbjct: 144 ALFR 147
Score = 32.7 bits (74), Expect = 0.12
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 35/123 (28%)
Query: 19 RVINCKKELMFSYSSLVDKLPVHRNSFSL--SADFSKSRLLLSHEKSVKWKQTQ-QLPLR 75
R+ +++L FS L P H S L ++D L+ + +V + Q+P+
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFH--SHLLVPASDLINKDLV---KNNVSFNAKDIQIPV- 459
Query: 76 NSIQCWAVETQSTPSFTIGKKFQLDDVIEAQQFDRDILNAIFEDDIKDYLTSQGVEWEES 135
+ G D+ + I + I D + V+WE +
Sbjct: 460 -----YDTFD--------GS-----DL---RVLSGSIS-----ERIVDCIIRLPVKWETT 493
Query: 136 ADL 138
Sbjct: 494 TQF 496
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine
transcarbamoylase, hydrolase; 2.50A {Mycoplasma
penetrans} PDB: 4anf_A
Length = 365
Score = 33.8 bits (78), Expect = 0.034
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 37/125 (29%)
Query: 137 DLMEVASKCDVVYQTRI------QRERFGERTDLYEEARGKYIVDQNVLQVMEKHAVVLH 190
D + A DV+Y T + E F +R + + VD N+++ + + LH
Sbjct: 244 DKILAAQDADVIY-TDVWVSLGEPFELFDKRIGELK----NFQVDMNMIKAAKNDVIFLH 298
Query: 191 PLP--------------------------RLDEITVDVDADPRAAYFRQAKNGLYIRMAL 224
LP E+T +V F QA+N ++ A+
Sbjct: 299 CLPAFHDDHTSFSKEVATTLGAKYPIVAKGEMEVTDEVFQSLHNKAFDQAENRMHSIKAI 358
Query: 225 LKLLL 229
+ +
Sbjct: 359 ILSTI 363
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex,
transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP:
c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Length = 333
Score = 32.9 bits (76), Expect = 0.074
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 32/120 (26%)
Query: 137 DLMEVASKCDVVYQTRI------QRERFGERTDLYEEARGKYIVDQNVLQVMEK-HAVVL 189
D+ + D +Y T + +E++ ER L +Y V+ ++Q+ L
Sbjct: 217 DVAKGVEGADFIY-TDVWVSMGEAKEKWAERIALLR----EYQVNSKMMQLTGNPEVKFL 271
Query: 190 HPLP--------------------RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
H LP E+T +V + F QA+N ++ A++ L
Sbjct: 272 HCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATL 331
>3upd_A Otcase, ornithine carbamoyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid; 2.91A
{Vibrio vulnificus}
Length = 358
Score = 32.6 bits (75), Expect = 0.076
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 31/119 (26%)
Query: 137 DLMEVASKCDVVYQTRI------QRERFGERTDLYEEARGKYIVDQNVLQVMEK-HAVVL 189
++ E CD +Y T + E + ER L + Y V+ NVL+ + +
Sbjct: 243 NVAEGVQGCDFLY-TDVWVSMGESPEAWDERVALMK----PYQVNMNVLKQTGNPNVKFM 297
Query: 190 HPLP-------------------RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
H LP + E+T +V + F +A+N ++ A++ L
Sbjct: 298 HCLPAFHNDETTIGKQVADKFGMKGLEVTEEVFESEHSIVFDEAENRMHTIKAVMVATL 356
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 31.4 bits (72), Expect = 0.23
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 174 VDQNV-LQVMEKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYI 220
+ + ++ + AV+ P+ R + + AY Q +G I
Sbjct: 214 IKTKIPIEPYKHQAVITQPIKRGTINPMVISFKYGHAYLTQTFHGGII 261
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A
{Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB:
1ort_A
Length = 335
Score = 30.6 bits (70), Expect = 0.43
Identities = 27/121 (22%), Positives = 40/121 (33%), Gaps = 33/121 (27%)
Query: 137 DLMEVASKCDVVYQTRI------QRERFGERTDLYEEARGKYIVDQNVLQVMEK-HAVVL 189
D E D V+ T + E +GER Y V+ +++ A +
Sbjct: 217 DPKEAVKGVDFVH-TDVWVSMGEPVEAWGERIKELL----PYQVNMEIMKATGNPRAKFM 271
Query: 190 HPLP--RLD-------------------EITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228
H LP E+T DV P F QA+N ++ A+L
Sbjct: 272 HCLPAFHNSETKVGKQIAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVST 331
Query: 229 L 229
L
Sbjct: 332 L 332
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal
binding-site, hexamer, cytoplasm, arginine metabolism;
2.10A {Lactobacillus hilgardii}
Length = 359
Score = 29.1 bits (66), Expect = 1.3
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 39/123 (31%)
Query: 137 DLMEVASKCDVVY--------QTRIQRERFGERTDLYEEARGKYIVDQNVLQ---VMEKH 185
DL E +VVY + + ER Y V+ ++ +
Sbjct: 238 DLDEGLKGSNVVYTDVWVSMGE-----SNWEERVKELT----PYQVNMEAMKKTGTPDDQ 288
Query: 186 AVVLHPLP-------------------RLDEITVDVDADPRAAYFRQAKNGLYIRMALLK 226
+ +H LP E+T +V A F +A+N ++ A++
Sbjct: 289 LIFMHCLPAFHNTDTQYGKEIKEKYGITEMEVTDEVFTSKYARQFEEAENRMHSIKAMMA 348
Query: 227 LLL 229
L
Sbjct: 349 ATL 351
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding,
deoxyribonucleoside kinase, DNA synthesis, phosphate
accept nucleotide-binding; HET: THM; 2.7A {Bacillus
anthracis} PDB: 2ja1_A*
Length = 214
Score = 28.4 bits (64), Expect = 1.8
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 20/84 (23%)
Query: 75 RNSIQCWAVETQSTPSFTIGKKFQLDDVI---EAQQFDRDI---LNAIFEDDIK------ 122
++ V I ++ DVI E Q FD DI + + +
Sbjct: 80 GLKVKAVPVSASKDIFKHITEEM---DVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGL 136
Query: 123 --DYLTSQGVEWEESADLMEVASK 144
D+ +G+ + + LM +A
Sbjct: 137 DQDF---RGLPFGQVPQLMAIAEH 157
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR
{Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Length = 174
Score = 27.6 bits (61), Expect = 2.2
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 110 RDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERT---DLYE 166
D+ + D + + ++ ++ + V+YQT ER+ E + D+
Sbjct: 18 VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQT----ERYNEDSFGYDIPI 73
Query: 167 EARGKYIV 174
+ G+Y++
Sbjct: 74 KEEGEYVL 81
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase,
homodimer, domain swapped, composite active site,
hydrolase; 1.90A {Enterobacteria phage T7} SCOP:
c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Length = 138
Score = 27.6 bits (61), Expect = 2.4
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 117 FEDDIKDYLTSQGVEWE-ESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVD 175
ED + L S+G+++E E + V + Y F ++ E +G + D
Sbjct: 8 LEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTP-----DFLLPNGIFVETKGLWESD 62
Query: 176 QNVLQVMEKHAVVLHPLPRLD 196
+KH ++ P LD
Sbjct: 63 D-----RKKHLLIREQHPELD 78
>3qr9_A Anthranilate phosphoribosyltransferase; anthranilic acids, M
tryptophan, magnesium binding, phosphoribosyl
pyrophosphate transferase; 1.87A {Mycobacterium
tuberculosis} PDB: 1zvw_A* 2bpq_A
Length = 377
Score = 28.0 bits (63), Expect = 3.0
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 177 NVLQVMEKHAVVLHPLPRLDEITV 200
V +V+H LDE+T
Sbjct: 231 GVFAARRSSVLVVHGDDGLDELTT 254
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage,
oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6
PDB: 2hji_A
Length = 179
Score = 27.6 bits (61), Expect = 3.0
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 119 DDIKDYLTSQGVE---WEESADLMEVASKCDVV--YQTRIQR 155
++I+ L ++GV W+ DL + V+ YQ I +
Sbjct: 22 EEIQQQLNAKGVRFERWQADRDLGAAPTAETVIAAYQHAIDK 63
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT
AMP; 3.05A {Bacillus subtilis}
Length = 444
Score = 27.1 bits (61), Expect = 5.8
Identities = 6/36 (16%), Positives = 20/36 (55%)
Query: 99 LDDVIEAQQFDRDILNAIFEDDIKDYLTSQGVEWEE 134
L + +E + + ++ A+ E + ++ ++ +EW+
Sbjct: 392 LAEALEEFKSNEVMVKALGEHLFEHFIEAKEIEWDM 427
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint
center FO structural genomics, JCSG, protein structure
initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB:
2evr_A 2fg0_A
Length = 235
Score = 26.8 bits (59), Expect = 5.9
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 62 KSVKWKQTQQLPLRNSIQCWAVETQSTPSFTIGKKFQLDDVIEAQQFDRDILNAIFEDDI 121
KS +++ L L +S +C ++ TQ+ G+ Q V QQ + + EDD
Sbjct: 14 KSGEYQCLAALNLYDSPECTSLATQAAV----GRHLQ---VTSNQQGAA-VEVCLCEDDY 65
Query: 122 KDYLTSQGVEWEESA 136
+L+ + + A
Sbjct: 66 PGWLSLGDLGLLKPA 80
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: d.20.1.3
Length = 137
Score = 26.1 bits (57), Expect = 6.2
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 99 LDDVIEAQQFDRDILNAIFEDDIKDYLTSQGVEWEESADL 138
++ + Q + L AI+ D +D E ++
Sbjct: 8 MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEI 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.387
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,448,935
Number of extensions: 197164
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 49
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)