Query 026862
Match_columns 232
No_of_seqs 141 out of 384
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 13:45:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 3.3E-35 7.1E-40 249.4 17.3 148 85-232 1-185 (198)
2 PF14869 DUF4488: Domain of un 53.1 1.3E+02 0.0028 24.8 10.2 46 133-183 2-48 (133)
3 PF05973 Gp49: Phage derived p 49.1 57 0.0012 24.0 5.5 43 104-146 6-50 (91)
4 TIGR02116 toxin_Txe_YoeB toxin 47.8 26 0.00056 25.5 3.4 32 106-138 17-48 (80)
5 PF06251 Caps_synth_GfcC: Caps 31.3 36 0.00078 29.7 2.2 65 82-148 53-130 (229)
6 cd03715 RT_ZFREV_like RT_ZFREV 30.7 1E+02 0.0022 26.1 4.9 43 100-142 5-56 (210)
7 PF14834 GST_C_4: Glutathione 29.9 70 0.0015 25.9 3.4 39 99-141 35-73 (117)
8 PF12644 DUF3782: Protein of u 29.6 95 0.0021 21.4 3.8 36 82-123 8-43 (64)
9 cd06409 PB1_MUG70 The MUG70 pr 29.2 39 0.00085 25.7 1.8 42 189-230 5-52 (86)
10 TIGR00053 addiction module tox 27.7 59 0.0013 23.8 2.6 32 107-138 23-54 (89)
11 smart00550 Zalpha Z-DNA-bindin 27.4 1.1E+02 0.0024 21.6 3.8 55 84-141 4-65 (68)
12 PF05015 Plasmid_killer: Plasm 26.5 1.7E+02 0.0037 21.9 4.9 32 92-123 10-41 (93)
13 cd01645 RT_Rtv RT_Rtv: Reverse 26.4 1.4E+02 0.003 25.5 5.0 43 100-142 5-55 (213)
14 PF07624 PSD2: Protein of unkn 25.5 1E+02 0.0022 22.4 3.4 24 100-123 36-59 (76)
15 COG3880 Modulator of heat shoc 24.2 84 0.0018 27.1 3.1 40 82-127 136-175 (176)
16 PF12283 Protein_K: Bacterioph 23.1 2.2E+02 0.0048 19.8 4.4 36 84-122 5-41 (56)
17 PF03076 GP3: Equine arteritis 20.9 68 0.0015 26.4 1.9 17 216-232 120-136 (160)
18 PF07240 Turandot: Stress-indu 20.2 2.1E+02 0.0046 21.8 4.3 36 89-124 13-48 (85)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=3.3e-35 Score=249.40 Aligned_cols=148 Identities=41% Similarity=0.673 Sum_probs=128.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCeeEEEEEeccccccc---ccCCcceeee
Q 026862 85 KVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTSQSILQ---TQRPRFLRSV 160 (232)
Q Consensus 85 ~~lK~~LL~~ia~t~RG~~as~~~r~~I~elI~~LEalnPt~~P~~s-~lL~G~W~LlYTTs~~~lg---~~~~p~~~~g 160 (232)
+++|++||+++++++||+.+++++|++|+++|++||++||+++|+++ ++|+|+|+|+|||+.++.. .+..+++.++
T Consensus 1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~ 80 (198)
T PF04755_consen 1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG 80 (198)
T ss_pred ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence 36999999999999999999999999999999999999999999998 9999999999999998763 3556678899
Q ss_pred eeeEEEEcCCCeEEEeeec---CCc-c--eEEEEEEecCCceEEEEEeeeEEee------------------------ec
Q 026862 161 RNYQAINVDTLRAQNMESG---PFF-N--QVTADLTPLNSRKVAVQFDYFKIGG------------------------LI 210 (232)
Q Consensus 161 ~i~Q~ID~~~~rv~NvV~f---p~~-~--~V~A~~~~~s~~Rv~V~Fe~~~l~G------------------------~i 210 (232)
++||+||.+++++.|+|++ |.. + .+++.+++.+++|+.|+|+++.+.. ..
T Consensus 81 ~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~~~~ 160 (198)
T PF04755_consen 81 RVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGISDEL 160 (198)
T ss_pred ceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhccccccccc
Confidence 9999999999999999994 433 2 6789999999999999999987721 01
Q ss_pred c--ccCC-CCCceEEEEEeeCCCCC
Q 026862 211 P--VKAP-NTARGELETTYLDEDLR 232 (232)
Q Consensus 211 ~--v~~P-~~~~GwldiTYLDedLR 232 (232)
+ ++.| ..++|||||||||||||
T Consensus 161 ~~~~~~~~~~~~g~l~~tYLDedlR 185 (198)
T PF04755_consen 161 PVPLPLPGGSPKGWLDTTYLDEDLR 185 (198)
T ss_pred ccccccCCCCCceEEEEEEECCCeE
Confidence 2 2233 47999999999999998
No 2
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=53.10 E-value=1.3e+02 Score=24.85 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=29.1
Q ss_pred CCCeeEEEE-EecccccccccCCcceeeeeeeEEEEcCCCeEEEeeecCCcc
Q 026862 133 LLNGKWELI-YTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFN 183 (232)
Q Consensus 133 lL~G~W~Ll-YTTs~~~lg~~~~p~~~~g~i~Q~ID~~~~rv~NvV~fp~~~ 183 (232)
.|.|-|+|. |-+...-.. .-+..+.++-+| .++|++.|+.-.|..+
T Consensus 2 ~l~GVWQ~c~~~~~~~~~~----g~l~~~~~lKil-S~Dgtf~Ni~~~~~~~ 48 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESPEVP----GKLKPSNVLKIL-SDDGTFVNITMIPKSG 48 (133)
T ss_pred CceEEEEEEEEeecCcccC----ceEeecccEEEE-cCCCcEEEEEEeCCCC
Confidence 478999999 444432221 123445666666 4788999998766444
No 3
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=49.11 E-value=57 Score=23.98 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCCCCC--CeeEEEEEeccc
Q 026862 104 ATPEDQQRVEQIARKLEGVNPTKEPLKSDLL--NGKWELIYTTSQ 146 (232)
Q Consensus 104 as~~~r~~I~elI~~LEalnPt~~P~~s~lL--~G~W~LlYTTs~ 146 (232)
.++..+++|...++.|+..+|...+.....| .|-|||......
T Consensus 6 L~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 6 LPDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CCHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 3567789999999999988854433333344 699999986654
No 4
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=47.80 E-value=26 Score=25.47 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeeE
Q 026862 106 PEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKW 138 (232)
Q Consensus 106 ~~~r~~I~elI~~LEalnPt~~P~~s~lL~G~W 138 (232)
++.+++|.++|++|+ .||.+.......|.|.|
T Consensus 17 ~~~~~~i~~~i~~l~-~~P~~~~~~~~~L~G~~ 48 (80)
T TIGR02116 17 KKLKKKINELIKDVR-RDPFKGKGKPEPLKGDL 48 (80)
T ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCcccCCCCC
Confidence 567889999999887 46664223334455543
No 5
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=31.32 E-value=36 Score=29.71 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=38.6
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCC-------------CCCCCCCCeeEEEEEeccccc
Q 026862 82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKE-------------PLKSDLLNGKWELIYTTSQSI 148 (232)
Q Consensus 82 ~~~~~lK~~LL~~ia~t~RG~~as~~~r~~I~elI~~LEalnPt~~-------------P~~s~lL~G~W~LlYTTs~~~ 148 (232)
..++..|+.|+..++.... ....+..+.+..++++|+....+.+ +...+.|.|..+|..-..+..
T Consensus 53 ~~~~~~~~~ll~~L~~l~~--~~~~~~~~~~~~l~~qL~~~~~~gR~~i~lD~d~~r~~~~~n~~L~ggd~L~vP~rp~~ 130 (229)
T PF06251_consen 53 AEAEQQKQQLLAQLAQLEQ--SADSDQAAAAQQLIQQLQSLEATGRVVINLDPDWVRLNPEYNPLLEGGDRLYVPPRPNT 130 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHTT--B----S----TTS-EESTTSS-B-ECEEEEE-----SE
T ss_pred HHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhccccceEEEecCHHHhhccccCCCcCCCCcEEEECCCCCE
Confidence 4677888888887766433 4456778889999999988765422 223478899999998887753
No 6
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=30.70 E-value=1e+02 Score=26.06 Aligned_cols=43 Identities=12% Similarity=0.282 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCCC-----CCCCe-eEEEEE
Q 026862 100 RGAEATPEDQQRVEQIARKLEGVN---PTKEPLKS-----DLLNG-KWELIY 142 (232)
Q Consensus 100 RG~~as~~~r~~I~elI~~LEaln---Pt~~P~~s-----~lL~G-~W~LlY 142 (232)
+....++++++++.+.|++|+..+ |...|-.+ +.=+| +||++.
T Consensus 5 ~~~~~~~~~~~~~~~~v~~ll~~G~I~~~~s~~~sp~~~V~Kk~g~~~R~~v 56 (210)
T cd03715 5 KQYPLPREAREGITPHIQELLEAGILVPCQSPWNTPILPVKKPGGNDYRMVQ 56 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeECCCCCCCCceEEEEeCCCCcceEEE
Confidence 345678999999999999999876 23222222 23367 888873
No 7
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=29.88 E-value=70 Score=25.86 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeeEEEE
Q 026862 99 DRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELI 141 (232)
Q Consensus 99 ~RG~~as~~~r~~I~elI~~LEalnPt~~P~~s~lL~G~W~Ll 141 (232)
.+....+++-++++++++...|.+-+... +-|.|+|-..
T Consensus 35 ~~~~pLs~~a~~~a~kL~~~a~~ll~~g~----~~LFGewsIA 73 (117)
T PF14834_consen 35 ARKPPLSEAAQAAAQKLIAVAERLLADGG----PNLFGEWSIA 73 (117)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTT------SSTTSS--HH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhccCC----CCccccchHH
Confidence 34566789999999999999999875433 4599999643
No 8
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=29.62 E-value=95 Score=21.39 Aligned_cols=36 Identities=31% Similarity=0.279 Sum_probs=29.7
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHhcC
Q 026862 82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVN 123 (232)
Q Consensus 82 ~~~~~lK~~LL~~ia~t~RG~~as~~~r~~I~elI~~LEaln 123 (232)
+++.++|++|-+..+. +++++.+.|++.+.+|.+.+
T Consensus 8 ~~i~a~~e~l~~~~~~------lt~e~~~~l~~~~~al~~~~ 43 (64)
T PF12644_consen 8 DEIMATKEELEELEER------LTKEDKKRLEEYIDALGARW 43 (64)
T ss_pred HHHHHHHHHHHHHHhh------cCHHHHHHHHHHHHHHHHHh
Confidence 4677888888887665 78999999999999998765
No 9
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=29.23 E-value=39 Score=25.70 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=24.9
Q ss_pred EEecCCceEEEEEe-eeEEeee---c--cccCCCCCceEEEEEeeCCC
Q 026862 189 LTPLNSRKVAVQFD-YFKIGGL---I--PVKAPNTARGELETTYLDED 230 (232)
Q Consensus 189 ~~~~s~~Rv~V~Fe-~~~l~G~---i--~v~~P~~~~GwldiTYLDed 230 (232)
|...+++.+++++. ...+..+ + .+.......+.+.+.|+|||
T Consensus 5 ~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDE 52 (86)
T cd06409 5 FKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDE 52 (86)
T ss_pred eeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCC
Confidence 44457777777776 3333211 1 22233334689999999987
No 10
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=27.71 E-value=59 Score=23.79 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCeeE
Q 026862 107 EDQQRVEQIARKLEGVNPTKEPLKSDLLNGKW 138 (232)
Q Consensus 107 ~~r~~I~elI~~LEalnPt~~P~~s~lL~G~W 138 (232)
.++.+|.++|++|...+|.+.......|.|.|
T Consensus 23 ~~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~~ 54 (89)
T TIGR00053 23 KDLKKLLKKMEELINTLPLPEHYKDHPLRGPW 54 (89)
T ss_pred ccHHHHHHHHHHHHcCCCCCcccCCccCcCCc
Confidence 45678888998888755444433333566654
No 11
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=27.45 E-value=1.1e+02 Score=21.61 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCCC-CCCCCH------HHHHHHHHHHHHHHhcCCCCCCCCCCCCCeeEEEE
Q 026862 84 AKVLKEELLEAIAPLDR-GAEATP------EDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELI 141 (232)
Q Consensus 84 ~~~lK~~LL~~ia~t~R-G~~as~------~~r~~I~elI~~LEalnPt~~P~~s~lL~G~W~Ll 141 (232)
-+..++++|.++...+. |+.+.+ -.+..|..++..||..+-... ...-.+.|++-
T Consensus 4 ~~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~---~~~~~~~W~i~ 65 (68)
T smart00550 4 QDSLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCK---QGGTPPLWKLT 65 (68)
T ss_pred chHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe---cCCCCCceEee
Confidence 35788999999987654 455544 336789999999999875432 11123788874
No 12
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=26.46 E-value=1.7e+02 Score=21.94 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHHHHhcC
Q 026862 92 LEAIAPLDRGAEATPEDQQRVEQIARKLEGVN 123 (232)
Q Consensus 92 L~~ia~t~RG~~as~~~r~~I~elI~~LEaln 123 (232)
|+.+...++-....++-...+...+++|++..
T Consensus 10 l~~l~~~~~~k~~~~~~~~~~~~~L~~L~aa~ 41 (93)
T PF05015_consen 10 LEKLFEDGKTKKIPADIAKKLRRRLDQLDAAT 41 (93)
T ss_pred HHHHHCCCCcCCcCHHHHHHHHHHHHHHHhCC
Confidence 44444444444456666777777777777663
No 13
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.
Probab=26.42 E-value=1.4e+02 Score=25.45 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCCC-----CCCCeeEEEEE
Q 026862 100 RGAEATPEDQQRVEQIARKLEGVN---PTKEPLKS-----DLLNGKWELIY 142 (232)
Q Consensus 100 RG~~as~~~r~~I~elI~~LEaln---Pt~~P~~s-----~lL~G~W~LlY 142 (232)
|.-..++++++++.+.|++|...+ |...|-.+ +.=+|+||++.
T Consensus 5 ~~~p~~~~~~~~~~~~i~~ll~~g~I~~~~s~~~sp~~~v~K~~g~~R~~~ 55 (213)
T cd01645 5 KQWPLTEEKLEALTELVTEQLKEGHIEPSTSPWNTPVFVIKKKSGKWRLLH 55 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCceecCCCCCcCcEEEEEcCCCCeEEEe
Confidence 455678999999999999998875 22233232 34478999873
No 14
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=25.48 E-value=1e+02 Score=22.40 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC
Q 026862 100 RGAEATPEDQQRVEQIARKLEGVN 123 (232)
Q Consensus 100 RG~~as~~~r~~I~elI~~LEaln 123 (232)
-|...+..|+..|+++++++++.+
T Consensus 36 lGR~~~~~D~~~i~~i~~~~~~~~ 59 (76)
T PF07624_consen 36 LGRPLEFSDRCEIDRIVEAFKANG 59 (76)
T ss_pred cCCCCCcchHHHHHHHHHHHHHcC
Confidence 366677899999999999998865
No 15
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=24.22 E-value=84 Score=27.08 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=32.4
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q 026862 82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKE 127 (232)
Q Consensus 82 ~~~~~lK~~LL~~ia~t~RG~~as~~~r~~I~elI~~LEalnPt~~ 127 (232)
..+.+||+.|-++|..-+- |+.+.|.+-|+.|++.++..+
T Consensus 136 ~~I~~L~e~Lq~~i~~Eef------EeAA~iRDqIr~Lk~k~~~dd 175 (176)
T COG3880 136 RKIIALKEALQDLIEREEF------EEAAVIRDQIRALKAKNGGDD 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCCCC
Confidence 4677999999999987542 778899999999999887643
No 16
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=23.13 E-value=2.2e+02 Score=19.79 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHhc
Q 026862 84 AKVLKEELLEAIAPLDR-GAEATPEDQQRVEQIARKLEGV 122 (232)
Q Consensus 84 ~~~lK~~LL~~ia~t~R-G~~as~~~r~~I~elI~~LEal 122 (232)
+.-+|++||-++...+| |+-+-. ++|.....+||.+
T Consensus 5 ~tli~qellll~yelnrsgllven---e~i~~~l~~le~l 41 (56)
T PF12283_consen 5 TTLIKQELLLLTYELNRSGLLVEN---EEIQSQLKQLEKL 41 (56)
T ss_pred HHHHHHHHHHHHHHhccccccccc---HHHHHHHHHHHHH
Confidence 45689999999999987 766543 5577777777765
No 17
>PF03076 GP3: Equine arteritis virus GP3; InterPro: IPR004310 This entry contains proteins encoded by ORF3 of Equine arteritis virus. They are possible envelope glcoproteins.
Probab=20.90 E-value=68 Score=26.37 Aligned_cols=17 Identities=41% Similarity=0.800 Sum_probs=14.5
Q ss_pred CCCceEEEEEeeCCCCC
Q 026862 216 NTARGELETTYLDEDLR 232 (232)
Q Consensus 216 ~~~~GwldiTYLDedLR 232 (232)
..+-|.+...|+|||||
T Consensus 120 ~~glg~~sfsfidedlr 136 (160)
T PF03076_consen 120 TAGLGQLSFSFIDEDLR 136 (160)
T ss_pred CCCcceEEEEEecccce
Confidence 45668899999999998
No 18
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=20.23 E-value=2.1e+02 Score=21.82 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 026862 89 EELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNP 124 (232)
Q Consensus 89 ~~LL~~ia~t~RG~~as~~~r~~I~elI~~LEalnP 124 (232)
++|+..-.....-+..++++|+.+++.|.+-+..|-
T Consensus 13 ~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~ 48 (85)
T PF07240_consen 13 QELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENN 48 (85)
T ss_pred HHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456665555555667899999999999999999884
Done!