Query 026862
Match_columns 232
No_of_seqs 141 out of 384
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 00:02:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 73.0 30 0.001 27.7 9.5 64 130-197 8-74 (142)
2 4i95_A Putative uncharacterize 69.8 41 0.0014 26.9 10.3 64 131-198 9-75 (142)
3 2kvu_A MKL/myocardin-like prot 41.6 73 0.0025 22.7 6.0 40 81-126 28-67 (75)
4 1z8m_A Conserved hypothetical 37.0 25 0.00087 24.1 3.0 17 110-126 25-41 (88)
5 2a6s_A Toxin YOEB; YEFM, antit 36.5 44 0.0015 22.6 4.1 20 106-126 21-40 (84)
6 3oei_C RELK (toxin RV3358); to 32.8 47 0.0016 24.4 4.0 34 106-141 33-71 (96)
7 3g5o_B Uncharacterized protein 30.3 58 0.002 23.6 4.1 21 105-126 34-55 (102)
8 1qbj_A Protein (double-strande 28.2 75 0.0026 22.4 4.3 56 86-144 10-73 (81)
9 1wmi_A RELE, hypothetical prot 22.2 96 0.0033 20.5 3.8 20 106-126 20-39 (90)
10 2doa_A RNA polymerase II elong 20.8 59 0.002 24.6 2.6 33 89-125 29-61 (104)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=73.01 E-value=30 Score=27.68 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=36.6
Q ss_pred CCCCCCeeEEEEEecccccccccCCcceeeeeeeEEEEcCCCeEEEeeecCCcc---eEEEEEEecCCceE
Q 026862 130 KSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFN---QVTADLTPLNSRKV 197 (232)
Q Consensus 130 ~s~lL~G~W~LlYTTs~~~lg~~~~p~~~~g~i~Q~ID~~~~rv~NvV~fp~~~---~V~A~~~~~s~~Rv 197 (232)
....|.|-|+|.+--+...-. +.-+..+..+-+|. ++||+.|++-.+..+ ...+.++..++...
T Consensus 8 ~~~~L~GvWQ~c~y~~~~~~~---~~~l~~s~~~KIlS-~DgtF~N~~m~~~~~aiIt~yGtY~l~SD~~Y 74 (142)
T 4gzv_A 8 KAADLKGIWQLCHYVSESPDV---PGALKPSNTFKVLS-DDGRIVNFTIIPGADAIITGYGTYKQLTDDSY 74 (142)
T ss_dssp GSCCCCEEEEEEEEEESSTTS---CCEEEEEEEEEEEC-TTSEEEEEECCTTSCCEEEEEEEEEEEETTEE
T ss_pred ccccceEEeEEeeEeecCCCC---CceEeecCceEEEC-CCCcEEEEEEeCCCCcEEEEeEEEEecCCCee
Confidence 446799999988444332211 11234566777775 778999998665333 12344444444433
No 2
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=69.83 E-value=41 Score=26.87 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=39.8
Q ss_pred CCCCCeeEEEEEecccccccccCCcceeeeeeeEEEEcCCCeEEEeeecCCcc---eEEEEEEecCCceEE
Q 026862 131 SDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFN---QVTADLTPLNSRKVA 198 (232)
Q Consensus 131 s~lL~G~W~LlYTTs~~~lg~~~~p~~~~g~i~Q~ID~~~~rv~NvV~fp~~~---~V~A~~~~~s~~Rv~ 198 (232)
...|.|-|+|..-.+.+. +-|.-++.+..+-+| .++|++.|++-.|..+ ...+.++..++....
T Consensus 9 ~~~L~GvWQ~C~y~s~~p---d~~g~L~psn~lKIl-SdDgtF~Ni~m~~~~~aiIt~~GtY~~~SD~~Y~ 75 (142)
T 4i95_A 9 PAHLQGIWQLCHYVSENP---DIPGVLKPSNTFKVL-SDDGRIVNFTIRPGTDAIITGYGTYRQISAAAYK 75 (142)
T ss_dssp CCSCCEEEEEEEEECSST---TSCCEEEEEEEEEEE-CTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEE
T ss_pred cccceeEeEEEEEecCCC---CCceEeccCccEEEE-cCCCcEEEEEEecCCCcEEEEeEEEEecCCccee
Confidence 356999999987665432 122335566777777 4888999998876443 223455544444433
No 3
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=41.56 E-value=73 Score=22.71 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=28.4
Q ss_pred CcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 026862 81 GKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTK 126 (232)
Q Consensus 81 ~~~~~~lK~~LL~~ia~t~RG~~as~~~r~~I~elI~~LEalnPt~ 126 (232)
.-.+.+||++|-. ||+.++--+.+-|+.+.+.++..++.+
T Consensus 28 klkVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~~ 67 (75)
T 2kvu_A 28 DMKVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPVP 67 (75)
T ss_dssp TSCHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCCS
T ss_pred HCcHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCCC
Confidence 3478899998765 677666566677788877777766544
No 4
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=36.96 E-value=25 Score=24.07 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhcCCCC
Q 026862 110 QRVEQIARKLEGVNPTK 126 (232)
Q Consensus 110 ~~I~elI~~LEalnPt~ 126 (232)
.++.++++.|...||.+
T Consensus 25 ~~~~~~i~~l~~~~p~~ 41 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPLD 41 (88)
T ss_dssp HHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 56888888886546643
No 5
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=36.49 E-value=44 Score=22.58 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 026862 106 PEDQQRVEQIARKLEGVNPTK 126 (232)
Q Consensus 106 ~~~r~~I~elI~~LEalnPt~ 126 (232)
....++|.++|+.|+. ||.+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 4456888899988865 6654
No 6
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=32.85 E-value=47 Score=24.40 Aligned_cols=34 Identities=21% Similarity=0.523 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC-----CCCCCCCCeeEEEE
Q 026862 106 PEDQQRVEQIARKLEGVNPTKE-----PLKSDLLNGKWELI 141 (232)
Q Consensus 106 ~~~r~~I~elI~~LEalnPt~~-----P~~s~lL~G~W~Ll 141 (232)
+..+.+|.++|++|+. ||... |+.. .+.|-|+..
T Consensus 33 k~~~krI~~~I~~l~~-nP~~g~gK~e~Lkg-~l~g~~s~R 71 (96)
T 3oei_C 33 RKTARRITRLIGEIQR-DPFSGIGKPEPLQG-ELSGYWSRR 71 (96)
T ss_dssp HHHHHHHHHHHHHHHH-CTTSSTTCCEECCG-GGTTCEEEE
T ss_pred HHHHHHHHHHHHHHHh-CCCcCCCchhhcCC-CCCCcEEEE
Confidence 4667899999999874 77421 3332 245666654
No 7
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=30.29 E-value=58 Score=23.55 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHH-HHHHhcCCCC
Q 026862 105 TPEDQQRVEQIA-RKLEGVNPTK 126 (232)
Q Consensus 105 s~~~r~~I~elI-~~LEalnPt~ 126 (232)
.+..+.+|.+.| ++|+ .||.+
T Consensus 34 ~~~~~~~I~~~I~~~L~-~~P~~ 55 (102)
T 3g5o_B 34 PPRILAAVVEFAFGDLS-REPLR 55 (102)
T ss_dssp CHHHHHHHHHHHTTHHH-HCTTT
T ss_pred CHHHHHHHHHHHHHHHH-hCccc
Confidence 456778899998 7785 56753
No 8
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=28.20 E-value=75 Score=22.39 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCH--------HHHHHHHHHHHHHHhcCCCCCCCCCCCCCeeEEEEEec
Q 026862 86 VLKEELLEAIAPLDRGAEATP--------EDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTT 144 (232)
Q Consensus 86 ~lK~~LL~~ia~t~RG~~as~--------~~r~~I~elI~~LEalnPt~~P~~s~lL~G~W~LlYTT 144 (232)
+..++||+++....-|..++. -.+..|...+..||..+-...- ..=.|.|++.-..
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~---g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE---AGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---SSSSCEEEEC---
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec---CCCCCeeEEeCcH
Confidence 567788888876554444443 2267899999999987643210 0113899886433
No 9
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=22.16 E-value=96 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 026862 106 PEDQQRVEQIARKLEGVNPTK 126 (232)
Q Consensus 106 ~~~r~~I~elI~~LEalnPt~ 126 (232)
+..+++|.+.++.|+. +|..
T Consensus 20 ~~~~~~i~~~i~~L~~-~P~~ 39 (90)
T 1wmi_A 20 KAHYRRFLEFRDILEY-EPVP 39 (90)
T ss_dssp HHHHHHHHHHHHHHTT-CSCC
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 5566788888888865 5643
No 10
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=20.83 E-value=59 Score=24.59 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 026862 89 EELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPT 125 (232)
Q Consensus 89 ~~LL~~ia~t~RG~~as~~~r~~I~elI~~LEalnPt 125 (232)
.+|+.-+.. +| +++.|+..|..++.+...+||.
T Consensus 29 ~EL~~RL~k--dG--l~~~d~~~l~~iL~eVA~~~~~ 61 (104)
T 2doa_A 29 AELLLRLQK--DG--LTQADKDALDGLLQQVANMSAK 61 (104)
T ss_dssp HHHHHHHHH--HC--CCHHHHHHHHHHHHHSSEECSS
T ss_pred HHHHHHHHH--cC--CCHHHHHHHHHHHHHHHhcCCc
Confidence 444444442 35 6788999999999999999873
Done!