Query 026862
Match_columns 232
No_of_seqs 141 out of 384
Neff 5.6
Searched_HMMs 13730
Date Tue Mar 26 00:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026862.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026862hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a2 e.8.1.2 (A:3-429) HIV- 38.9 12 0.00084 32.7 4.0 42 101-142 21-73 (427)
2 d2gyc31 a.108.1.1 (3:2-48) Rib 22.0 34 0.0025 20.7 2.8 30 88-126 3-32 (47)
3 d2gu3a1 d.17.1.6 (A:99-161) Un 21.1 26 0.0019 22.5 2.3 14 217-230 29-42 (63)
4 d1qpza1 a.35.1.5 (A:2-58) Puri 19.9 36 0.0026 21.1 2.7 18 103-120 26-43 (57)
5 d2hsga1 a.35.1.5 (A:2-58) Gluc 18.9 38 0.0028 21.0 2.7 18 103-120 27-44 (57)
6 d1ztwa1 e.8.1.2 (A:24-278) MML 17.6 37 0.0027 26.6 3.0 43 100-142 39-90 (255)
7 d2aj6a1 d.108.1.1 (A:1-118) Hy 15.8 66 0.0048 21.0 3.7 17 216-232 75-91 (118)
8 d1z8ma1 d.298.1.2 (A:1-88) Hyp 14.8 24 0.0017 23.8 0.9 37 109-145 24-72 (88)
9 d1wmia1 d.298.1.2 (A:1-88) Hyp 13.0 89 0.0065 20.0 3.6 22 105-127 19-40 (88)
10 d1efaa1 a.35.1.5 (A:2-60) Lac 12.9 60 0.0044 20.2 2.4 18 103-120 28-45 (59)
No 1
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=38.95 E-value=12 Score=32.69 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCC-----CCCCCCCCC------CeeEEEEE
Q 026862 101 GAEATPEDQQRVEQIARKLEGVNPT-----KEPLKSDLL------NGKWELIY 142 (232)
Q Consensus 101 G~~as~~~r~~I~elI~~LEalnPt-----~~P~~s~lL------~G~W~LlY 142 (232)
--..+++++++|.++|++|+..+-. ..|-.+|.+ .|+||++-
T Consensus 21 q~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~v 73 (427)
T d1mu2a2 21 QWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLI 73 (427)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEE
Confidence 3557899999999999999998743 334444432 49999983
No 2
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=22.01 E-value=34 Score=20.73 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 026862 88 KEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTK 126 (232)
Q Consensus 88 K~~LL~~ia~t~RG~~as~~~r~~I~elI~~LEalnPt~ 126 (232)
|+++|++|+.+. --+|-++|..+|......
T Consensus 3 ke~Ileaia~MS---------VmdvveLi~amEEKFGVs 32 (47)
T d2gyc31 3 KDQIIEAVAAMS---------VMDVVELISAMEEKFGVS 32 (47)
T ss_dssp HHHHHHHHHHSC---------HHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhh---------HHHHHHHHHHHHHHhCcc
Confidence 889999998864 267888999999876654
No 3
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=21.07 E-value=26 Score=22.47 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=10.8
Q ss_pred CCceEEEEEeeCCC
Q 026862 217 TARGELETTYLDED 230 (232)
Q Consensus 217 ~~~GwldiTYLDed 230 (232)
...-.||+||+|++
T Consensus 29 ~~~pvWEVtY~~~~ 42 (63)
T d2gu3a1 29 GNVLLWEVTYLDKE 42 (63)
T ss_dssp TTEEEEEEEEECTT
T ss_pred CCEEEEEEEEEeCC
Confidence 34567999999886
No 4
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.90 E-value=36 Score=21.14 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 026862 103 EATPEDQQRVEQIARKLE 120 (232)
Q Consensus 103 ~as~~~r~~I~elI~~LE 120 (232)
..+++.|++|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 478999999999999985
No 5
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=18.92 E-value=38 Score=20.99 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 026862 103 EATPEDQQRVEQIARKLE 120 (232)
Q Consensus 103 ~as~~~r~~I~elI~~LE 120 (232)
..+++.|++|.+++++|.
T Consensus 27 ~Vs~~tr~rV~~aa~~lg 44 (57)
T d2hsga1 27 NVKPSTRKKVLETIERLG 44 (57)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 479999999999999984
No 6
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=17.55 E-value=37 Score=26.65 Aligned_cols=43 Identities=7% Similarity=0.119 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCC---CCCCCCCC-----CC-CeeEEEEE
Q 026862 100 RGAEATPEDQQRVEQIARKLEGVNP---TKEPLKSD-----LL-NGKWELIY 142 (232)
Q Consensus 100 RG~~as~~~r~~I~elI~~LEalnP---t~~P~~s~-----lL-~G~W~LlY 142 (232)
+-...++++++++.+.|++|...+- ...|-.++ .= .|+||++-
T Consensus 39 ~~~~~~~~~~~~l~~~i~~ll~~G~I~p~~s~~~sp~~~V~Kk~~~~~R~v~ 90 (255)
T d1ztwa1 39 KQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTSEEEECCSCBCCEEECCSSSSCCCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhceeeecCCCcccccccccccccceEEEee
Confidence 3456789999999999999998863 22333332 22 37888885
No 7
>d2aj6a1 d.108.1.1 (A:1-118) Hypothetical protein MW0638 {Staphylococcus aureus [TaxId: 1280]}
Probab=15.84 E-value=66 Score=21.00 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=12.8
Q ss_pred CCCceEEEEEeeCCCCC
Q 026862 216 NTARGELETTYLDEDLR 232 (232)
Q Consensus 216 ~~~~GwldiTYLDedLR 232 (232)
....++++-.|+|++.|
T Consensus 75 ~~~~~~i~~l~V~~~~R 91 (118)
T d2aj6a1 75 EKSMVNIELLYVEPQFR 91 (118)
T ss_dssp TTTEEEEEEEEECGGGT
T ss_pred CCCeEEEEEEEEchhhc
Confidence 34567888888888876
No 8
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894 {Helicobacter pylori [TaxId: 210]}
Probab=14.80 E-value=24 Score=23.77 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCC------------CCCeeEEEEEecc
Q 026862 109 QQRVEQIARKLEGVNPTKEPLKSD------------LLNGKWELIYTTS 145 (232)
Q Consensus 109 r~~I~elI~~LEalnPt~~P~~s~------------lL~G~W~LlYTTs 145 (232)
...+.++|..|-..+|-+.-...- -+.|.|.|+|.-.
T Consensus 24 ~~~~~~~i~~L~~~~pl~~~~~dH~L~G~~~g~rechi~~D~llIy~~~ 72 (88)
T d1z8ma1 24 DSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVK 72 (88)
T ss_dssp HHHHHHHHHHHTTSCCCCGGGCCEECSGGGTTSEECCSSTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCCccccCccccCcccCeeEEEEcCCEEEEEEEc
Confidence 367788888887777765433333 3445566666543
No 9
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.97 E-value=89 Score=20.00 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCC
Q 026862 105 TPEDQQRVEQIARKLEGVNPTKE 127 (232)
Q Consensus 105 s~~~r~~I~elI~~LEalnPt~~ 127 (232)
.+..+.+|.+.+++|+. ||.+.
T Consensus 19 ~~~~~~~I~~~l~~L~~-~P~~~ 40 (88)
T d1wmia1 19 PKAHYRRFLEFRDILEY-EPVPR 40 (88)
T ss_dssp CHHHHHHHHHHHHHHTT-CSCCH
T ss_pred CHHHHHHHHHHHHHHHh-CcCcC
Confidence 56778889999988865 66543
No 10
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.86 E-value=60 Score=20.18 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 026862 103 EATPEDQQRVEQIARKLE 120 (232)
Q Consensus 103 ~as~~~r~~I~elI~~LE 120 (232)
..+++.|++|.+++++|-
T Consensus 28 ~vs~~tr~rI~~~a~~lg 45 (59)
T d1efaa1 28 HVSAKTREKVEAAMAELN 45 (59)
T ss_dssp SCCTHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 468999999999999885
Done!