BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026863
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 80 VRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139
VRG+A E +TP I +FG + R R +P+ V +G+D RVSG
Sbjct: 10 VRGIANE-------KITPEFAMKIGMAFGTLLKRE---GRKKPL----VVVGRDTRVSGE 55
Query: 140 SLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIE 199
L A+ +GL GC V D+G+A TPA +T F D ++ + +N I +
Sbjct: 56 MLKEALISGLLSVGCDVIDVGIAPTPAVQWAT--KHFNADGGAVITASHNPPEYNGIKLL 113
Query: 200 FAFWISLYEIRYCCVTDDCFSLTL-HSKWSEI 230
+ L + R V + F +KW EI
Sbjct: 114 EPNGMGLKKEREAIVEELFFKEDFDRAKWYEI 145
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYA 93
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 14 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 69
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 70 GLVDCGCQVSDVGMVPTPVLYYA 92
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYA 93
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYA 93
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYA 93
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 14 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 69
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 70 GLVDCGCQVSDVGMVPTPVLYYA 92
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYA 93
>pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
From P.aeruginosa
Length = 463
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G TP + +
Sbjct: 71 GLVDCGCQVSDVGXVPTPVLYYA 93
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 18/109 (16%)
Query: 77 GSD-VRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR 135
G+D VRGVA +LTP I FG +V L + RP KV +G+D R
Sbjct: 27 GTDGVRGVA-------NKELTPELAFKIGR-FGGYV---LTKDTDRP----KVIIGRDTR 71
Query: 136 VSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMV 184
+SG L A+ AGL G V +G+ +TP ++ L A +M+
Sbjct: 72 ISGHMLEGALVAGLLSTGAEVMRLGVISTPG--VAYLTKALDAQAGVMI 118
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153
+LTP V ++++ G + + + K+ +G+D R G L V GL G
Sbjct: 17 ELTPELVLKLSKAIGTFFGK-----------NSKILVGRDVRAGGDMLVKIVEGGLLSVG 65
Query: 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAI 198
V+D G+A TPA + + YD +++ + +N I +
Sbjct: 66 VEVYDGGMAPTPA--LQYAVKTLGYDGGVVITASHNPAPYNGIKV 108
>pdb|3I3W|A Chain A, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
pdb|3I3W|B Chain B, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
Length = 443
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 112 IRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST 171
+ SL N++ P V +G+D R SG L A+ +GL AG V D+G+ TP T
Sbjct: 31 VGSLINQKNYPK---FVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGVVPTPVVAFXT 87
Query: 172 L 172
+
Sbjct: 88 V 88
>pdb|2O1M|A Chain A, Crystal Structure Of The Probable Amino-Acid Abc
Transporter Extracellular-Binding Protein Ytmk From
Bacillus Subtilis. Northeast Structural Genomics
Consortium Target Sr572
pdb|2O1M|B Chain B, Crystal Structure Of The Probable Amino-Acid Abc
Transporter Extracellular-Binding Protein Ytmk From
Bacillus Subtilis. Northeast Structural Genomics
Consortium Target Sr572
Length = 258
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 59 YNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENE 118
+N+V + +I LQN +RG+ DL V A S G V++ +
Sbjct: 96 FNKVAYNHFPLKITVLQNNDTIRGIE---------DLKGKRVITSATSNGALVLKKWNED 146
Query: 119 RGRPVE 124
GRP E
Sbjct: 147 NGRPFE 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,706,300
Number of Sequences: 62578
Number of extensions: 250427
Number of successful extensions: 630
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 23
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)