Query 026863
Match_columns 232
No_of_seqs 160 out of 1343
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 13:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02878 PGM_PMM_I: Phosphoglu 100.0 4.1E-34 8.8E-39 231.5 11.9 129 72-218 1-136 (137)
2 PLN02371 phosphoglucosamine mu 100.0 4.6E-33 9.9E-38 272.5 20.2 155 54-214 48-209 (583)
3 PRK14323 glmM phosphoglucosami 100.0 2.9E-31 6.2E-36 250.9 15.6 126 72-215 3-135 (440)
4 PRK14324 glmM phosphoglucosami 100.0 3.2E-31 6.9E-36 251.5 14.6 126 73-217 2-134 (446)
5 cd03089 PMM_PGM The phosphoman 100.0 5.1E-31 1.1E-35 249.2 15.3 125 74-218 1-131 (443)
6 cd05802 GlmM GlmM is a bacteri 100.0 3.9E-31 8.4E-36 249.4 14.3 125 74-217 1-132 (434)
7 PRK14317 glmM phosphoglucosami 100.0 6.2E-31 1.3E-35 250.5 15.4 129 71-217 15-150 (465)
8 PRK14318 glmM phosphoglucosami 100.0 7E-31 1.5E-35 249.0 14.9 130 73-217 3-139 (448)
9 PRK14316 glmM phosphoglucosami 100.0 6.8E-31 1.5E-35 248.6 14.2 126 73-216 2-134 (448)
10 cd05805 MPG1_transferase GTP-m 100.0 4.1E-31 8.9E-36 249.7 12.6 122 74-217 1-129 (441)
11 PRK14314 glmM phosphoglucosami 100.0 1.1E-30 2.3E-35 247.8 14.9 130 71-218 2-138 (450)
12 PRK14315 glmM phosphoglucosami 100.0 1.1E-30 2.4E-35 247.6 14.5 124 72-214 3-134 (448)
13 PRK15414 phosphomannomutase Cp 100.0 1.5E-30 3.3E-35 247.5 14.2 123 73-218 5-135 (456)
14 cd05803 PGM_like4 This PGM-lik 100.0 2.8E-30 6.1E-35 244.5 15.3 126 74-218 1-133 (445)
15 COG1109 {ManB} Phosphomannomut 100.0 2.6E-30 5.5E-35 246.6 14.9 125 72-216 7-138 (464)
16 PRK14320 glmM phosphoglucosami 100.0 2.3E-30 5E-35 245.1 14.4 124 73-214 3-133 (443)
17 PRK10887 glmM phosphoglucosami 100.0 3.4E-30 7.4E-35 243.9 15.0 124 72-214 1-131 (443)
18 PRK14321 glmM phosphoglucosami 100.0 2.2E-30 4.7E-35 245.8 13.4 124 73-219 3-133 (449)
19 TIGR01455 glmM phosphoglucosam 100.0 5.3E-30 1.1E-34 242.5 15.0 126 75-217 1-133 (443)
20 PRK14322 glmM phosphoglucosami 100.0 1.8E-30 4E-35 244.9 11.6 120 73-217 4-130 (429)
21 cd03087 PGM_like1 This archaea 100.0 5.2E-30 1.1E-34 241.8 13.6 122 74-219 1-129 (439)
22 cd05800 PGM_like2 This PGM-lik 100.0 8.3E-30 1.8E-34 241.8 14.2 127 74-218 2-136 (461)
23 PRK14319 glmM phosphoglucosami 100.0 5.8E-29 1.3E-33 234.8 12.5 117 73-214 2-124 (430)
24 PRK09542 manB phosphomannomuta 100.0 1.8E-28 3.9E-33 232.5 14.3 108 75-203 1-108 (445)
25 PLN02307 phosphoglucomutase 100.0 2.1E-28 4.5E-33 239.8 14.5 132 63-214 15-162 (579)
26 TIGR01132 pgm phosphoglucomuta 100.0 2.3E-28 5.1E-33 237.4 13.8 125 72-214 38-177 (543)
27 cd05799 PGM2 This CD includes 100.0 2.6E-28 5.6E-33 233.2 13.8 129 74-215 3-139 (487)
28 cd03088 ManB ManB is a bacteri 100.0 4.1E-28 8.8E-33 230.9 14.9 120 74-214 1-126 (459)
29 PRK07564 phosphoglucomutase; V 100.0 3.7E-28 8.1E-33 236.0 14.5 124 72-213 37-175 (543)
30 PTZ00150 phosphoglucomutase-2- 100.0 4.3E-28 9.3E-33 237.4 13.9 130 74-215 46-183 (584)
31 cd03085 PGM1 Phosphoglucomutas 100.0 1E-27 2.2E-32 233.6 15.0 123 73-213 11-146 (548)
32 cd05801 PGM_like3 This bacteri 99.9 3.3E-27 7.2E-32 228.3 13.4 124 72-213 20-159 (522)
33 KOG1220 Phosphoglucomutase/pho 99.9 3.9E-25 8.4E-30 213.5 12.6 130 75-218 62-199 (607)
34 COG0033 Pgm Phosphoglucomutase 99.7 3.3E-16 7.2E-21 148.4 12.5 129 60-204 3-137 (524)
35 cd03084 phosphohexomutase The 99.4 2.8E-13 6.1E-18 124.8 6.2 67 74-218 1-74 (355)
36 KOG0625 Phosphoglucomutase [Ca 99.2 4.1E-11 8.9E-16 113.5 10.7 114 76-204 19-136 (558)
37 cd03086 PGM3 PGM3 (phosphogluc 98.8 6.7E-09 1.5E-13 101.3 7.0 54 125-180 102-155 (513)
38 PLN02895 phosphoacetylglucosam 98.8 7.6E-09 1.7E-13 102.0 6.8 48 125-172 127-174 (562)
39 PTZ00302 N-acetylglucosamine-p 98.8 9.4E-09 2E-13 101.8 6.7 48 125-172 152-200 (585)
40 PLN02895 phosphoacetylglucosam 98.1 6.5E-06 1.4E-10 81.5 6.1 51 142-204 31-82 (562)
41 cd03086 PGM3 PGM3 (phosphogluc 97.9 1.1E-05 2.4E-10 79.0 4.3 37 179-217 36-79 (513)
42 PTZ00302 N-acetylglucosamine-p 97.9 1.2E-05 2.7E-10 79.9 4.4 37 178-216 75-118 (585)
43 KOG2537 Phosphoglucomutase/pho 97.6 5.8E-05 1.3E-09 73.5 4.2 49 125-173 124-172 (539)
44 KOG2537 Phosphoglucomutase/pho 95.6 0.0051 1.1E-07 60.2 1.3 25 177-203 58-82 (539)
45 TIGR01119 lacB galactose-6-pho 87.2 2.6 5.7E-05 36.1 7.1 60 127-188 2-68 (171)
46 PTZ00215 ribose 5-phosphate is 87.2 2.8 6E-05 35.3 7.1 61 126-188 3-72 (151)
47 PF02502 LacAB_rpiB: Ribose/Ga 86.9 2.5 5.4E-05 35.0 6.6 60 127-188 1-67 (140)
48 TIGR01118 lacA galactose-6-pho 86.7 3.6 7.9E-05 34.2 7.4 60 127-188 2-66 (141)
49 PRK08621 galactose-6-phosphate 86.3 3.9 8.4E-05 34.1 7.4 61 127-189 2-67 (142)
50 PRK12613 galactose-6-phosphate 86.2 4 8.7E-05 34.0 7.4 61 127-189 2-66 (141)
51 PRK05571 ribose-5-phosphate is 85.9 4.4 9.6E-05 33.9 7.6 60 127-188 2-69 (148)
52 TIGR01120 rpiB ribose 5-phosph 85.4 3.6 7.8E-05 34.3 6.8 60 127-188 1-67 (143)
53 TIGR02133 RPI_actino ribose 5- 82.8 6.7 0.00014 32.8 7.4 61 127-189 2-70 (148)
54 PRK08622 galactose-6-phosphate 82.8 5.4 0.00012 34.3 6.9 60 127-188 2-68 (171)
55 PRK12615 galactose-6-phosphate 81.4 6.6 0.00014 33.7 7.0 60 127-188 2-68 (171)
56 TIGR00689 rpiB_lacA_lacB sugar 78.9 6.8 0.00015 32.6 6.1 59 128-188 1-66 (144)
57 TIGR01501 MthylAspMutase methy 76.4 12 0.00026 30.7 6.9 52 130-186 9-60 (134)
58 COG0426 FpaA Uncharacterized f 70.1 20 0.00043 34.6 7.6 74 100-187 230-306 (388)
59 PRK02261 methylaspartate mutas 68.7 35 0.00076 27.7 7.9 56 126-187 4-63 (137)
60 COG0698 RpiB Ribose 5-phosphat 67.3 11 0.00023 31.9 4.6 59 127-187 2-68 (151)
61 cd02072 Glm_B12_BD B12 binding 66.3 12 0.00026 30.5 4.7 52 130-186 7-58 (128)
62 TIGR00640 acid_CoA_mut_C methy 65.4 32 0.0007 27.8 7.0 53 130-187 10-62 (132)
63 COG2185 Sbm Methylmalonyl-CoA 64.9 20 0.00043 30.0 5.7 44 125-171 12-58 (143)
64 TIGR02370 pyl_corrinoid methyl 57.9 56 0.0012 27.9 7.6 61 125-188 84-145 (197)
65 cd02069 methionine_synthase_B1 56.2 64 0.0014 28.2 7.7 60 125-187 88-148 (213)
66 cd03364 TOPRIM_DnaG_primases T 55.3 31 0.00067 24.8 4.8 34 126-159 44-77 (79)
67 smart00115 CASc Caspase, inter 55.0 1.2E+02 0.0026 26.7 9.4 91 127-221 11-114 (241)
68 cd02070 corrinoid_protein_B12- 48.2 1E+02 0.0022 26.3 7.6 57 125-187 82-142 (201)
69 PF00861 Ribosomal_L18p: Ribos 47.8 66 0.0014 25.6 6.0 52 95-156 68-119 (119)
70 PRK14719 bifunctional RNAse/5- 46.3 21 0.00045 33.9 3.3 32 126-157 68-99 (360)
71 cd02071 MM_CoA_mut_B12_BD meth 44.8 1.3E+02 0.0027 23.5 7.2 51 131-187 8-59 (122)
72 PRK13883 conjugal transfer pro 42.9 1.3E+02 0.0029 25.3 7.3 59 94-161 27-85 (151)
73 PLN02739 serine acetyltransfer 41.9 20 0.00043 34.2 2.4 32 93-135 322-353 (355)
74 PF13662 Toprim_4: Toprim doma 40.4 23 0.00051 25.6 2.2 33 126-158 47-79 (81)
75 PF06258 Mito_fiss_Elm1: Mitoc 39.8 3.1E+02 0.0067 25.3 10.4 89 81-187 148-237 (311)
76 PRK11921 metallo-beta-lactamas 36.6 1.8E+02 0.0038 27.4 8.0 53 100-161 231-286 (394)
77 PF03808 Glyco_tran_WecB: Glyc 36.4 2.2E+02 0.0047 23.7 7.7 62 126-189 74-136 (172)
78 PRK13835 conjugal transfer pro 36.0 1.8E+02 0.0039 24.4 7.0 56 93-158 32-87 (145)
79 PF03602 Cons_hypoth95: Conser 35.8 56 0.0012 27.7 4.1 54 131-187 18-74 (183)
80 COG1867 TRM1 N2,N2-dimethylgua 35.3 93 0.002 30.1 5.8 90 74-188 59-156 (380)
81 PTZ00090 40S ribosomal protein 32.6 2.9E+02 0.0062 25.0 8.0 60 94-166 159-219 (233)
82 PF13362 Toprim_3: Toprim doma 32.3 1.4E+02 0.0029 22.0 5.3 36 126-161 42-79 (96)
83 COG0256 RplR Ribosomal protein 32.0 1.8E+02 0.004 23.8 6.3 51 96-156 75-125 (125)
84 PRK05452 anaerobic nitric oxid 31.3 3.3E+02 0.0072 26.6 9.1 37 126-162 252-291 (479)
85 PRK09271 flavodoxin; Provision 31.3 2.5E+02 0.0054 22.8 7.2 31 127-157 2-33 (160)
86 PF04069 OpuAC: Substrate bind 30.2 1.6E+02 0.0035 25.6 6.2 46 127-172 2-47 (257)
87 PRK05568 flavodoxin; Provision 29.5 1.4E+02 0.0031 23.2 5.3 35 127-161 3-38 (142)
88 PF05762 VWA_CoxE: VWA domain 29.4 2.8E+02 0.0061 23.9 7.5 57 102-162 131-188 (222)
89 cd06533 Glyco_transf_WecG_TagA 28.7 3.3E+02 0.0071 22.6 7.6 57 127-186 73-131 (171)
90 PRK04017 hypothetical protein; 28.6 1.1E+02 0.0024 25.2 4.5 32 126-157 66-97 (132)
91 COG0683 LivK ABC-type branched 28.5 4E+02 0.0086 24.4 8.8 78 103-189 134-214 (366)
92 PRK06756 flavodoxin; Provision 27.9 2.6E+02 0.0055 22.1 6.5 35 127-161 3-38 (148)
93 PF00582 Usp: Universal stress 27.0 68 0.0015 23.4 2.8 42 126-167 3-44 (140)
94 COG1922 WecG Teichoic acid bio 26.4 3.6E+02 0.0078 24.6 7.8 60 127-189 136-196 (253)
95 cd02067 B12-binding B12 bindin 26.3 1.8E+02 0.004 22.1 5.2 52 130-187 7-59 (119)
96 cd01989 STK_N The N-terminal d 26.0 95 0.002 24.0 3.6 38 127-164 1-38 (146)
97 cd06342 PBP1_ABC_LIVBP_like Ty 25.1 3.7E+02 0.0081 23.4 7.6 53 102-162 120-172 (334)
98 PF13458 Peripla_BP_6: Peripla 25.0 2.5E+02 0.0054 24.6 6.5 54 95-157 114-167 (343)
99 cd00032 CASc Caspase, interleu 25.0 4.6E+02 0.01 22.8 9.9 92 127-222 12-116 (243)
100 PRK10646 ADP-binding protein; 24.7 1.5E+02 0.0033 24.8 4.7 54 96-167 10-63 (153)
101 PF02789 Peptidase_M17_N: Cyto 24.5 3.1E+02 0.0066 20.7 6.2 53 93-154 64-117 (126)
102 PRK01642 cls cardiolipin synth 24.1 3.2E+02 0.007 26.6 7.6 79 142-228 378-463 (483)
103 PRK05569 flavodoxin; Provision 24.1 1.9E+02 0.0042 22.5 5.1 34 127-160 3-37 (141)
104 COG5012 Predicted cobalamin bi 24.1 1.4E+02 0.0029 27.0 4.5 51 126-178 105-156 (227)
105 KOG0061 Transporter, ABC super 23.9 4.3E+02 0.0093 26.8 8.6 88 71-171 159-264 (613)
106 TIGR01391 dnaG DNA primase, ca 23.5 3.5E+02 0.0075 25.9 7.6 72 63-159 262-334 (415)
107 KOG2451 Aldehyde dehydrogenase 23.4 53 0.0012 32.2 2.0 60 136-198 171-234 (503)
108 PRK09004 FMN-binding protein M 23.2 2.3E+02 0.005 22.9 5.5 48 136-191 13-60 (146)
109 cd06335 PBP1_ABC_ligand_bindin 23.0 2.7E+02 0.0059 24.9 6.5 50 103-160 124-173 (347)
110 CHL00041 rps11 ribosomal prote 22.5 4E+02 0.0086 21.2 7.8 60 94-165 52-112 (116)
111 cd01029 TOPRIM_primases TOPRIM 22.5 2.3E+02 0.0051 19.7 4.9 34 126-159 44-77 (79)
112 smart00493 TOPRIM topoisomeras 22.2 1.3E+02 0.0028 20.8 3.4 28 126-153 48-75 (76)
113 TIGR02884 spore_pdaA delta-lac 21.3 2.2E+02 0.0049 24.6 5.4 34 126-159 187-220 (224)
114 PRK09607 rps11p 30S ribosomal 21.3 4.4E+02 0.0095 21.7 6.7 66 93-165 48-117 (132)
115 TIGR00696 wecB_tagA_cpsF bacte 21.2 5.1E+02 0.011 21.9 7.6 59 96-168 57-116 (177)
116 cd00951 KDGDH 5-dehydro-4-deox 21.0 5.6E+02 0.012 23.0 8.1 81 65-159 20-100 (289)
117 PRK11263 cardiolipin synthase 20.5 5.9E+02 0.013 24.4 8.5 47 179-225 296-350 (411)
No 1
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=100.00 E-value=4.1e-34 Score=231.47 Aligned_cols=129 Identities=28% Similarity=0.356 Sum_probs=111.6
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 026863 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (232)
Q Consensus 72 ~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a 151 (232)
+++|+++||||+++.+ +|||+++.+++.+|++++.+.. ...+|+||||+|.+|++++++++++|++
T Consensus 1 ~~~F~~~girG~~~~~------~lt~~~~~~~~~a~~~~~~~~~--------~~~~VvVg~D~R~~s~~~~~~~~~~l~~ 66 (137)
T PF02878_consen 1 RVLFGTSGIRGIINVG------ELTPEFAARLAQAFASYLKEKG--------NGSRVVVGRDTRPSSPMLAKALAAGLRA 66 (137)
T ss_dssp -CCBBTTSEEEECTHT------TBSHHHHHHHHHHHHHHHHHTT--------TSSEEEEEE-SSTTHHHHHHHHHHHHHH
T ss_pred CCccCCCCeeEEeCCC------CCCHHHHHHHHHHHHHhhcccC--------CCCeEEEEEcccCCHHHHHHHHHHHHhh
Confidence 4689999999999842 6999999999999999998851 2478999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcCC
Q 026863 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDDC 218 (232)
Q Consensus 152 ~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~~ 218 (232)
+|++|+++|++|||+++|++. +++++|||||||||| |++||||||+..+ .+++||+.+++++-
T Consensus 67 ~G~~V~~~g~~~tP~~~~~~~--~~~~~ggi~iTaShn--p~~~ngik~~~~~G~~~~~~~~~~I~~~~~~~~~ 136 (137)
T PF02878_consen 67 NGVDVIDIGLVPTPALSFAIR--QLNADGGIMITASHN--PPGYNGIKFFDANGGPISPEEERKIEQIIEREEF 136 (137)
T ss_dssp TTEEEEEEEEB-HHHHHHHHH--HHTESEEEEE--TTS---TTEEEEEEEETTSSB--HHHHHHHHHHHHHT-E
T ss_pred cccccccccccCcHHhhhhcc--ccccceeeEEEecCC--CCCcceEEEEeCCCCcCCHHHHHHHHHHHHhhhc
Confidence 999999999999999999996 678999999999999 9999999999764 58999999998763
No 2
>PLN02371 phosphoglucosamine mutase family protein
Probab=100.00 E-value=4.6e-33 Score=272.50 Aligned_cols=155 Identities=47% Similarity=0.686 Sum_probs=126.6
Q ss_pred cccccccccccchhhHHhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 026863 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (232)
Q Consensus 54 ~~~~~~~~~~~~~~m~~~~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD 133 (232)
....+..++...+ .+.++.+|+++||||++++|++|+.++|||++|.++|+|||+|+.++.... + ....+|+||||
T Consensus 48 ~~~~~~~~~~~~~-~~~~~~lf~~~giRGv~~~g~~g~~v~lTpe~v~~ig~A~a~~l~~~~~~~-~--~~~~~VvVG~D 123 (583)
T PLN02371 48 AAASSSTESPVVD-KDDIRKLQNGSDIRGVAVEGVEGEPVTLTPPAVEAIGAAFAEWLLEKKKAD-G--SGELRVSVGRD 123 (583)
T ss_pred cccCCCCcCcCcc-HHHHHHhhhhcCcceEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc-c--CCCCeEEEEeC
Confidence 3333444444333 368999999999999999887777779999999999999999997641000 0 01247999999
Q ss_pred CCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hH
Q 026863 134 PRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SL 206 (232)
Q Consensus 134 ~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~ 206 (232)
+|.+|++|++++++||+++|++|+++|++|||+++|++...+.+++|||||||||| |++||||||+..+ .+
T Consensus 124 ~R~sS~~l~~a~a~gL~s~Gi~V~~~g~~pTP~~~~av~~~~~~~~gGImITASHN--P~~~NGiK~~~~~G~~~~~~~~ 201 (583)
T PLN02371 124 PRISGPRLADAVFAGLASAGLDVVDMGLATTPAMFMSTLTEREDYDAPIMITASHL--PYNRNGLKFFTKDGGLGKPDIK 201 (583)
T ss_pred CCCChHHHHHHHHHHHHHCCCEEEEecccCchHHHHHHHhccCCCceEEEEeCCCC--CCCCCCEEEeCCCCCCCchHHH
Confidence 99999999999999999999999999999999999999632347899999999999 9999999998653 37
Q ss_pred HHHHHHHh
Q 026863 207 YEIRYCCV 214 (232)
Q Consensus 207 ~eIe~~~~ 214 (232)
++||+.++
T Consensus 202 ~~ie~~~~ 209 (583)
T PLN02371 202 DILERAAR 209 (583)
T ss_pred HHHHHHHh
Confidence 78887766
No 3
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=2.9e-31 Score=250.88 Aligned_cols=126 Identities=31% Similarity=0.301 Sum_probs=113.4
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 026863 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (232)
Q Consensus 72 ~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a 151 (232)
+.+|+++||||++++ ++|||+++.++|+|||+++.... ...+|+||||+|.+|++|++++++||++
T Consensus 3 ~~~Fgt~giRG~~~~------~~lt~e~~~~lg~a~g~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~s 68 (440)
T PRK14323 3 RRYFGTDGVRGVAGE------PPLTPEFVLKLGQAAGEVFKRHG--------PRPVVLLGKDTRQSGDMLEAALAAGLTS 68 (440)
T ss_pred ccEeCCCCeeeecCC------CCCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEeCCCccHHHHHHHHHHHHHH
Confidence 468999999999984 26999999999999999997631 1256999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhh
Q 026863 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVT 215 (232)
Q Consensus 152 ~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~ 215 (232)
+|++|+++|++|||+++|++. +++++|||||||||| |++||||||+..+ .+++||+++++
T Consensus 69 ~G~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHn--P~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~ 135 (440)
T PRK14323 69 RGVRVEHLGVLPTPGVSYLTR--HLGATAGVVISASHN--PYQDNGIKFFGADGEKLPDAAELEIEALLDE 135 (440)
T ss_pred CCCEEEEecccChHHHHHHHH--HhCCCEEEEEecCCC--CCccCCEEEeCCCCCcCCHHHHHHHHHHHhc
Confidence 999999999999999999996 688999999999999 9999999998653 47889998876
No 4
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=3.2e-31 Score=251.50 Aligned_cols=126 Identities=28% Similarity=0.301 Sum_probs=113.7
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 026863 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (232)
Q Consensus 73 ~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~ 152 (232)
.+|+++||||++++ +|||++|.++|+|||+++..+ + ...+|+||||+|.+|++|++++++||+++
T Consensus 2 ~~Fgt~GiRG~~~~-------~lt~~~~~~lg~a~g~~l~~~-----~---~~~~V~Vg~D~R~ss~~l~~a~~~gL~s~ 66 (446)
T PRK14324 2 KLFGTDGVRGKAGE-------KLTAFLAMRLAMAAGIYFKKH-----S---ITNKILVGKDTRRSGYMIENALVSGLTSV 66 (446)
T ss_pred cccCCCCcceecCC-------CcCHHHHHHHHHHHHHHHHhC-----C---CCCeEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 47999999999986 899999999999999999764 1 11469999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcC
Q 026863 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDD 217 (232)
Q Consensus 153 Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~ 217 (232)
|++|+++|++|||+++|++. +++++|||||||||| |++||||||+..+ .+++||+.+++++
T Consensus 67 G~~V~~~g~~pTP~~~~a~~--~~~~~gGI~ITaSHN--P~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~ 134 (446)
T PRK14324 67 GYNVIQIGPMPTPAIAFLTE--DMRCDAGIMISASHN--PYYDNGIKFFDSYGNKLDEEEEKEIEEIFFDEE 134 (446)
T ss_pred CCeEEEecCccHHHHHHHHh--hcCCceEEEEEcCCC--ChhHCCEEEECCCCCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999995 788999999999999 9999999998653 4888999987664
No 5
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=99.97 E-value=5.1e-31 Score=249.17 Aligned_cols=125 Identities=30% Similarity=0.492 Sum_probs=114.5
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 026863 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (232)
Q Consensus 74 lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~G 153 (232)
+|+++||||++++ +|||+++.++|+|||+++.++. ..+|+||||+|.+|++|+++++++|+++|
T Consensus 1 ~Fg~~giRG~~~~-------~lt~~~v~~l~~a~~~~l~~~~---------~~~VvVg~D~R~~s~~~~~a~~~gL~s~G 64 (443)
T cd03089 1 IFRAYDIRGIAGE-------ELTEEIAYAIGRAFGSWLLEKG---------AKKVVVGRDGRLSSPELAAALIEGLLAAG 64 (443)
T ss_pred CCcccccceeeCC-------ccCHHHHHHHHHHHHHHHHhcC---------CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 6999999999985 8999999999999999997531 24799999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEecc------chHHHHHHHHhhcCC
Q 026863 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFW------ISLYEIRYCCVTDDC 218 (232)
Q Consensus 154 v~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~------~~~~eIe~~~~~e~~ 218 (232)
++|+++|++|||+++|++. +++++|||||||||| |++||||||+.. +.+++||+.+.+++.
T Consensus 65 ~~V~~~g~~pTP~~~~~v~--~~~a~gGI~ITASHN--P~~~nGiK~~~~G~~~~~~~~~~Ie~~~~~~~~ 131 (443)
T cd03089 65 CDVIDIGLVPTPVLYFATF--HLDADGGVMITASHN--PPEYNGFKIVIGGGPLSGEDIQALRERAEKGDF 131 (443)
T ss_pred CcEEEeCCcchHHHHHHHh--ccCCCeEEEEecCCC--CcccCceEeccCCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999995 788999999999999 999999999865 458999999987653
No 6
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.97 E-value=3.9e-31 Score=249.40 Aligned_cols=125 Identities=30% Similarity=0.311 Sum_probs=113.9
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 026863 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (232)
Q Consensus 74 lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~G 153 (232)
+|+++||||++++ +|||++|.++|+|||+++.++. ...+|+||||+|.+|++|++++++||+++|
T Consensus 1 ~Fg~~giRG~~~~-------~lt~e~~~~lg~a~~~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G 65 (434)
T cd05802 1 LFGTDGIRGVANE-------PLTPELALKLGRAAGKVLGKGG--------GRPKVLIGKDTRISGYMLESALAAGLTSAG 65 (434)
T ss_pred CCCCCccceECCC-------CCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 6999999999986 9999999999999999997531 125799999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcC
Q 026863 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDD 217 (232)
Q Consensus 154 v~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~ 217 (232)
++|+++|++|||+++|++. +++++|||||||||| |++||||||+.++ .+++||+.+.+++
T Consensus 66 ~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHn--p~~~nGiK~~~~~G~~i~~~~~~~i~~~~~~~~ 132 (434)
T cd05802 66 VDVLLLGVIPTPAVAYLTR--KLRADAGVVISASHN--PFEDNGIKFFSSDGYKLPDEVEEEIEALIDKEL 132 (434)
T ss_pred CcEEEEcccchHHHHHHHH--HhCCCeEEEEEecCC--chhhCCEEEECCCCCcCCHHHHHHHHHHHhCcc
Confidence 9999999999999999996 688999999999999 9999999998653 3899999988765
No 7
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=6.2e-31 Score=250.52 Aligned_cols=129 Identities=23% Similarity=0.164 Sum_probs=115.3
Q ss_pred hhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 026863 71 IRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (232)
Q Consensus 71 ~~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~ 150 (232)
.+.+|+++||||++++ +|||++|.++|+|+|+++.++. + ...+|+||||+|.+|++|++++++||+
T Consensus 15 ~~~~Fgt~GIRG~~~~-------~ltpe~a~~lg~a~g~~l~~~~----~---~~~~VvVG~D~R~ss~~l~~a~~~gL~ 80 (465)
T PRK14317 15 ASPLFGTDGIRGKVGE-------LLTAPLALQVGFWAGQVLRQTA----P---GEGPVLIGQDSRNSSDMLAMALAAGLT 80 (465)
T ss_pred cCCeecCCCeeeEeCc-------ccCHHHHHHHHHHHHHHHHhcc----C---CCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 4578999999999985 8999999999999999986531 0 125699999999999999999999999
Q ss_pred HCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEecc-------chHHHHHHHHhhcC
Q 026863 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFW-------ISLYEIRYCCVTDD 217 (232)
Q Consensus 151 a~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~-------~~~~eIe~~~~~e~ 217 (232)
++|++|+++|++|||+++|++. +++++|||||||||| |++||||||+.. +.+++||+.+.+++
T Consensus 81 s~Gv~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHn--P~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~ 150 (465)
T PRK14317 81 AAGREVWHLGLCPTPAVAYLTR--KSEAIGGLMISASHN--PPEDNGIKFFGADGTKLSPELQAQIEAGLRGEL 150 (465)
T ss_pred HCCCeEEEecccCcHHHHHHHH--hcCCCEEEEEeCCCC--CcccCCEEEEcCCCCcCCHHHHHHHHHHHhccc
Confidence 9999999999999999999995 788999999999999 999999999865 34899999887764
No 8
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=7e-31 Score=248.96 Aligned_cols=130 Identities=28% Similarity=0.246 Sum_probs=114.7
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 026863 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (232)
Q Consensus 73 ~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~ 152 (232)
.+|+++||||++++ +|||+++.+||+|||+++.++.... ....+|+||||+|.+|++|++++++||+++
T Consensus 3 ~~Fg~~giRG~~~~-------~ltpe~~~~lg~a~~~~l~~~~~~~----~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 71 (448)
T PRK14318 3 RLFGTDGVRGLANR-------DLTAELALALGAAAARVLGHAGRPG----GRRPVAVVGRDPRASGEFLEAAVSAGLASA 71 (448)
T ss_pred cccCCCCcceecCC-------ccCHHHHHHHHHHHHHHHHhccccc----CCCCeEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 68999999999986 8999999999999999987531000 012569999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEecc-------chHHHHHHHHhhcC
Q 026863 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFW-------ISLYEIRYCCVTDD 217 (232)
Q Consensus 153 Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~-------~~~~eIe~~~~~e~ 217 (232)
|++|+++|++|||+++|++. +++++|||||||||| |++||||||+.. +.+++||+.+++++
T Consensus 72 G~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHn--p~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~ 139 (448)
T PRK14318 72 GVDVLRVGVLPTPAVAYLTA--ALDADFGVMISASHN--PMPDNGIKFFAAGGHKLPDDVEDRIEAVLGQLP 139 (448)
T ss_pred CCEEEEecccCchHHHHHHH--hcCCCEEEEEEcCCC--CcccCCEEEEcCCCCcCCHHHHHHHHHHHhccC
Confidence 99999999999999999996 688999999999999 999999999865 34899999988755
No 9
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=6.8e-31 Score=248.64 Aligned_cols=126 Identities=28% Similarity=0.319 Sum_probs=113.2
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 026863 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (232)
Q Consensus 73 ~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~ 152 (232)
.+|+++||||+++. +|||+++.+||+|||+++.++. + ...+|+||||+|.+|++|++++++||+++
T Consensus 2 ~~Fg~~giRG~~~~-------~ltpe~~~~ig~a~~~~l~~~~----~---~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 67 (448)
T PRK14316 2 KYFGTDGVRGVANK-------ELTPELAFKLGRAGGYVLTKHE----T---ERPKVLVGRDTRISGDMLESALIAGLLSV 67 (448)
T ss_pred ceeccCCcceEcCC-------CCCHHHHHHHHHHHHHHHHhcc----C---CCCeEEEEECCCcCHHHHHHHHHHHHHHC
Confidence 47999999999985 8999999999999999987521 0 12569999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhc
Q 026863 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTD 216 (232)
Q Consensus 153 Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e 216 (232)
|++|+++|++|||+++|++. +++++|||||||||| |++||||||+..+ .+++||+.+.++
T Consensus 68 G~~V~~~g~~pTP~~~~av~--~~~~~gGi~ITaSHn--p~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~ 134 (448)
T PRK14316 68 GAEVMRLGVIPTPGVAYLTR--ALGADAGVMISASHN--PVEDNGIKFFGSDGFKLSDEQEDEIEALLDAE 134 (448)
T ss_pred CCEEEEecccchHHHHHHHH--HhcCcEEEEEEecCC--ChhhCcEEEEcCCCCcCCHHHHHHHHHHHhcc
Confidence 99999999999999999996 788999999999999 9999999998653 489999998763
No 10
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=99.97 E-value=4.1e-31 Score=249.67 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=111.9
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 026863 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (232)
Q Consensus 74 lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~G 153 (232)
+|+++||||++++ +|||++|.++|+|||+++..+ .+|+||||+|.+|++|++++++||+++|
T Consensus 1 ~Fgt~giRG~~~~-------~lt~~~~~~lg~a~~~~l~~~-----------~~VvVG~D~R~ss~~~~~a~~~gL~s~G 62 (441)
T cd05805 1 LFGGRGVSGLINV-------DITPEFATRLGAAYGSTLPPG-----------STVTVSRDASRASRMLKRALISGLLSTG 62 (441)
T ss_pred CCCCCCceEEeCC-------CCCHHHHHHHHHHHhhcCCCC-----------CEEEEEcCCChhHHHHHHHHHHHHHhCC
Confidence 6999999999986 899999999999999987532 4699999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcC
Q 026863 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDD 217 (232)
Q Consensus 154 v~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~ 217 (232)
++|+++|.+|||+++|++. +++++|||||||||| |++||||||+..+ .+++||+.+.+++
T Consensus 63 ~~V~~~g~~pTP~~~~av~--~~~~~gGi~ITaSHn--p~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~ 129 (441)
T cd05805 63 VNVRDLGALPLPVARYAIR--FLGASGGIHVRTSPD--DPDKVEIEFFDSRGLNISRAMERKIENAFFRED 129 (441)
T ss_pred CeEEecCCcCchHHHHHHH--hcCCCeeEEEEeCCC--CccceEEEEECCCCCcCCHHHHHHHHHHHhhhh
Confidence 9999999999999999996 788999999999999 9999999998764 3889998887654
No 11
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=1.1e-30 Score=247.80 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=116.3
Q ss_pred hhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 026863 71 IRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (232)
Q Consensus 71 ~~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~ 150 (232)
++.+|+++||||+++. .+|||+++.++|+|||+++..+. ...+|+||||+|.+|++|++++++||+
T Consensus 2 ~~~~Fgt~GiRG~~~~------~~lt~e~~~~l~~a~~~~l~~~~--------~~~~VvVg~D~R~~s~~l~~a~~~gL~ 67 (450)
T PRK14314 2 MKKLFGTDGVRGRANV------YPMTAEMALQLGRAAAYVFRNGS--------GRHRVVIGKDTRLSGYMFENALIAGLC 67 (450)
T ss_pred CCceeCCCCcceecCC------CCCCHHHHHHHHHHHHHHHHhcC--------CCCcEEEEeCCCcChHHHHHHHHHHHH
Confidence 3578999999999985 14999999999999999997541 124799999999999999999999999
Q ss_pred HCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcCC
Q 026863 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDDC 218 (232)
Q Consensus 151 a~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~~ 218 (232)
++|++|+++|.+|||+++|++. +++++|||||||||| |++||||||+..+ .+++||+++.+++.
T Consensus 68 s~Gv~V~~~g~~ptP~~~~a~~--~~~~~gGI~iTaShn--p~~~ngiK~~~~~G~~~~~~~~~~Ie~~~~~~~~ 138 (450)
T PRK14314 68 SMGVDVLLVGPLPTPGIAFITR--SMRADAGVVISASHN--PYQDNGIKFFSSDGFKLPDEVELRIEAMVLSKDF 138 (450)
T ss_pred HCCCeEEEecccCCHHHHHHHH--hcCCCEEEEEEeCCC--CcccccEEEECCCCCCCCHHHHHHHHHHHhcCCc
Confidence 9999999999999999999996 688999999999999 9999999998653 48899999988764
No 12
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=1.1e-30 Score=247.64 Aligned_cols=124 Identities=25% Similarity=0.254 Sum_probs=112.3
Q ss_pred hhhccccceeeeeccCCCCCCCC-CCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 026863 72 RRLQNGSDVRGVALEGEKGRTVD-LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (232)
Q Consensus 72 ~~lFg~sGIRGi~~~g~~~~~~~-LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~ 150 (232)
+.+|+++||||+++. + |||++|.++|+|||+++..+. ...+|+||||+|.+|++|++++++||+
T Consensus 3 ~~~Fg~~giRG~~~~-------~~lt~e~~~~lg~a~g~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~ 67 (448)
T PRK14315 3 RKYFGTDGIRGRANT-------FPMTAELALRVGQAAGLYFRRGD--------HRHRVVIGKDTRLSGYMIENALVAGFT 67 (448)
T ss_pred CcEECCCCceecCCC-------CCCCHHHHHHHHHHHHHhHhhcC--------CCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 468999999999985 7 999999999999999998531 124799999999999999999999999
Q ss_pred HCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHh
Q 026863 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCV 214 (232)
Q Consensus 151 a~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~ 214 (232)
++|++|+++|++|||+++|++. +++++|||||||||| |++||||||+..+ .+++||+.+.
T Consensus 68 s~G~~V~~~g~~pTP~~~~a~~--~~~~~gGi~ITaSHn--P~~~nGiK~~~~~G~~i~~~~~~~ie~~~~ 134 (448)
T PRK14315 68 SVGMDVLLLGPIPTPAVAMLTR--SMRADLGVMISASHN--PFEDNGIKLFGPDGFKLSDEIELEIEALLD 134 (448)
T ss_pred HCCCeEEEeCCcccHHHHHHHH--hcCCCEEEEEEcCCC--CcccCCEEEECCCCCcCCHHHHHHHHHHHh
Confidence 9999999999999999999996 688999999999999 9999999998653 4889998883
No 13
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=99.97 E-value=1.5e-30 Score=247.53 Aligned_cols=123 Identities=23% Similarity=0.343 Sum_probs=111.2
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 026863 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (232)
Q Consensus 73 ~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~ 152 (232)
.+|+++||||++++ +|||+++.++|+|||+++.. .+|+||||+|.+|++|++++++||+++
T Consensus 5 ~~Fg~~GiRG~~~~-------~lt~~~~~~~~~a~a~~l~~------------~~VvVg~D~R~ss~~l~~a~a~gL~s~ 65 (456)
T PRK15414 5 TCFKAYDIRGKLGE-------ELNEDIAWRIGRAYGEFLKP------------KTIVLGGDVRLTSETLKLALAKGLQDA 65 (456)
T ss_pred ceecccCcceeeCC-------CcCHHHHHHHHHHHHHHhcC------------CeEEEEECCCCChHHHHHHHHHHHHHC
Confidence 58999999999985 89999999999999999852 369999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccch--------HHHHHHHHhhcCC
Q 026863 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWIS--------LYEIRYCCVTDDC 218 (232)
Q Consensus 153 Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~~--------~~eIe~~~~~e~~ 218 (232)
|++|+++|++|||+++|++. +++++|||||||||| |++|||+|++.... +++||+.+++++.
T Consensus 66 Gi~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHN--P~~~NG~Ki~~~~g~~~~~~~~~~~i~~~~~~~~~ 135 (456)
T PRK15414 66 GVDVLDIGMSGTEEIYFATF--HLGVDGGIEVTASHN--PMDYNGMKLVREGARPISGDTGLRDVQRLAEANDF 135 (456)
T ss_pred CCeEEEeCCcChHHHHHhhh--ccCCCeEEEEecCCC--CCCCCCEEeecCCCcccCcHHHHHHHHHHHhcCCc
Confidence 99999999999999999995 788999999999999 99999999986543 3578888876653
No 14
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.97 E-value=2.8e-30 Score=244.46 Aligned_cols=126 Identities=25% Similarity=0.356 Sum_probs=114.1
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 026863 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (232)
Q Consensus 74 lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~G 153 (232)
+|+++||||++++ +|||+++.++|+|||+++.++. ...+|+||||+|.+|++|+++++++|+++|
T Consensus 1 ~f~~~GiRG~~~~-------~lt~~~v~~l~~a~~~~l~~~~--------~~~~Vvvg~D~R~~s~~l~~a~~~gL~~~G 65 (445)
T cd05803 1 IISISGIRGIVGE-------GLTPEVITRYVAAFATWQPERT--------KGGKIVVGRDGRPSGPMLEKIVIGALLACG 65 (445)
T ss_pred CCCcCceeeecCC-------CCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 5999999999985 8999999999999999998541 125799999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcCC
Q 026863 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDDC 218 (232)
Q Consensus 154 v~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~~ 218 (232)
++|+++|.+|||+++|++. ++++++||||||||| |++||||||+..+ .+++||+.+.+++.
T Consensus 66 ~~V~~~g~~pTP~~~~a~~--~~~~~~GI~ITaShn--p~~~nGiK~~~~~G~~~~~~~~~~i~~~~~~~~~ 133 (445)
T cd05803 66 CDVIDLGIAPTPTVQVLVR--QSQASGGIIITASHN--PPQWNGLKFIGPDGEFLTPDEGEEVLSCAEAGSA 133 (445)
T ss_pred CeEEEeCCCCchHHHHHHH--HhCCCeeEEEEecCC--CcccccEEEECCCCCcCCHHHHHHHHHHHhcccc
Confidence 9999999999999999996 788999999999999 9999999998663 46999998887653
No 15
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.6e-30 Score=246.58 Aligned_cols=125 Identities=31% Similarity=0.384 Sum_probs=114.0
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 026863 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (232)
Q Consensus 72 ~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a 151 (232)
+.+||++||||++++ +||++++.++|.|+|+++... + ..+|+||||+|.+|++|+.++++||++
T Consensus 7 ~~~FGT~GiRG~~~~-------~lt~~~~~~~g~a~~~~l~~~-----~----~~~VvVG~D~R~ss~~~~~a~~~gl~~ 70 (464)
T COG1109 7 KLLFGTDGIRGVAGE-------ELTPEFALKLGRALGSVLRKK-----G----APKVVVGRDTRLSSEMLAAALAAGLTS 70 (464)
T ss_pred cceECCCccccccCC-------CcCHHHHHHHHHHHHHHHhhc-----C----CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 468999999999985 899999999999999999862 1 268999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhc
Q 026863 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTD 216 (232)
Q Consensus 152 ~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e 216 (232)
+|++|+++|++|||+++|++. ++++++||||||||| |++|||||++..+ .+++||..+..+
T Consensus 71 ~G~~v~~~g~~pTP~~~f~~~--~~~~~~gvmITASHN--P~~yNGiK~~~~~G~~i~~~~e~~Ie~~~~~~ 138 (464)
T COG1109 71 AGIDVYDLGLVPTPAVAFATR--KLGADAGVMITASHN--PPEYNGIKFFGSDGGKISDDIEEEIEAILAEE 138 (464)
T ss_pred CCCeEEEeCCCCCHHHHHHHH--hcCCCeEEEEecCCC--CchhCcEEEEcCCCCcCChHHHHHHHHHHhcc
Confidence 999999999999999999996 788999999999999 9999999999753 588888877776
No 16
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=2.3e-30 Score=245.12 Aligned_cols=124 Identities=21% Similarity=0.252 Sum_probs=111.2
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 026863 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (232)
Q Consensus 73 ~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~ 152 (232)
.+|+++||||+++. .+|||+++.+||+|||+++.++ + ...+|+||||+|.+|++|++++++||+++
T Consensus 3 ~~Fgt~giRG~~~~------~~ltpe~~~~lg~a~g~~l~~~-----~---~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 68 (443)
T PRK14320 3 KYFGTDGIRGEVAN------STITVEFTQKLGNAVGSLINQK-----N---YPKFVIVGQDTRSSGGFLKFALVSGLNAA 68 (443)
T ss_pred cccCCCCeeeEcCC------CCCCHHHHHHHHHHHHHhHhhC-----C---CCCeEEEEECCCcCHHHHHHHHHHHHHHC
Confidence 68999999999964 2799999999999999998653 1 12469999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHh
Q 026863 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCV 214 (232)
Q Consensus 153 Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~ 214 (232)
|++|+++|++|||+++|++. +++++|||||||||| |++||||||+..+ .+++||+.+.
T Consensus 69 G~~V~d~g~~pTP~~~~av~--~~~~~gGI~ITaSHN--p~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~ 133 (443)
T PRK14320 69 GIDVLDLGVVPTPVVAFMTV--KHRAAAGFVITASHN--KFTDNGIKLFSSNGFKLDDALEEEVEDMID 133 (443)
T ss_pred CCEEEEecccCchHHHHHHH--HcCCceEEEEEeCCC--chHHCeEEEECCCCCcCCHHHHHHHHHHHh
Confidence 99999999999999999996 688999999999999 9999999998653 4789988865
No 17
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=3.4e-30 Score=243.93 Aligned_cols=124 Identities=29% Similarity=0.294 Sum_probs=111.8
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 026863 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (232)
Q Consensus 72 ~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a 151 (232)
+.+|+++||||++++ .+|||+++.++|+|||+++.++ + ..+|+||||+|.+|++|++++++||++
T Consensus 1 ~~~Fgt~GiRG~~~~------~~ltpe~~~~lg~a~a~~l~~~-----~----~~~VvVg~D~R~ss~~l~~a~~~gL~s 65 (443)
T PRK10887 1 RKYFGTDGIRGKVGQ------APITPDFVLKLGWAAGKVLARQ-----G----RPKVLIGKDTRISGYMLESALEAGLAA 65 (443)
T ss_pred CCccCCCccceecCC------CCCCHHHHHHHHHHHHHHHHhC-----C----CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468999999999974 1599999999999999999753 1 256999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHh
Q 026863 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCV 214 (232)
Q Consensus 152 ~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~ 214 (232)
+|++|+++|.+|||+++|++. .++++|||||||||| |++||||||+..+ .+++||+++.
T Consensus 66 ~Gv~V~~~g~~pTP~~~~a~~--~~~~~gGI~ITaShn--p~~~ngiK~~~~~G~~i~~~~~~~ie~~~~ 131 (443)
T PRK10887 66 AGVDVLLTGPMPTPAVAYLTR--TLRAEAGIVISASHN--PYYDNGIKFFSADGTKLPDEVELAIEAELD 131 (443)
T ss_pred CCCeEEEECCcChHHHHHHHH--HcCCCEEEEEecCCC--CcccCeEEEECCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999996 688999999999999 9999999998653 4889988884
No 18
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=2.2e-30 Score=245.82 Aligned_cols=124 Identities=25% Similarity=0.259 Sum_probs=114.0
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 026863 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (232)
Q Consensus 73 ~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~ 152 (232)
.+|+++||||++++ +|||+++.++|+|||+++.. .+|+||||+|.+|++|++++++||+++
T Consensus 3 ~~Fgt~GiRG~~~~-------~lt~e~~~~lg~a~~~~l~~------------~~VvVg~D~R~~s~~l~~a~~~gL~s~ 63 (449)
T PRK14321 3 KYFGTSGIREVVNE-------KLTPELALKVGLALGTYLGG------------GKVVVGKDTRTSSEMLKNALISGLLST 63 (449)
T ss_pred cccccCCeeEEcCC-------CCCHHHHHHHHHHHHhhccC------------CcEEEEeCCCCChHHHHHHHHHHHHHC
Confidence 68999999999986 99999999999999999852 369999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcCCC
Q 026863 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDDCF 219 (232)
Q Consensus 153 Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~~~ 219 (232)
|++|+++|++|||+++|++. +++++|||||||||| |++||||||+..+ .+++||+.+.+++.+
T Consensus 64 G~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHn--P~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~~~~~ 133 (449)
T PRK14321 64 GVDVIDIGLAPTPLTGFAIK--LYNADAGVTITASHN--PPEYNGIKVWQRNGMAYTPEMENELERIIESGNFK 133 (449)
T ss_pred CCeEEEeCCcCCcHHHHHHH--hcCCCeEEEEEeCCC--CHHHCcEEEECCCCCcCCHHHHHHHHHHHhccccc
Confidence 99999999999999999996 688999999999999 9999999998653 489999999877643
No 19
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=99.97 E-value=5.3e-30 Score=242.46 Aligned_cols=126 Identities=27% Similarity=0.247 Sum_probs=112.4
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCC
Q 026863 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGC 154 (232)
Q Consensus 75 Fg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv 154 (232)
|+++||||+++. .+|||+++.++|+|||+++.++.. ...+|+||||+|.+|++|++++++||+++|+
T Consensus 1 Fgt~giRG~~~~------~~ltp~~~~~l~~a~~~~l~~~~~-------~~~~V~Vg~D~R~~s~~l~~a~~~gL~s~G~ 67 (443)
T TIGR01455 1 FGTDGVRGRAGQ------EPLTAELALLLGAAAGRVLRQGRD-------TAPRVVIGKDTRLSGYMLENALAAGLNSAGV 67 (443)
T ss_pred CCCCccceecCC------CCCCHHHHHHHHHHHHHHHHhcCC-------CCCeEEEEeCCCcChHHHHHHHHHHHHHCCC
Confidence 899999999983 279999999999999999976410 1236999999999999999999999999999
Q ss_pred eEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcC
Q 026863 155 LVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDD 217 (232)
Q Consensus 155 ~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~ 217 (232)
+|+++|.+|||+++|++. +++++|||||||||| |++||||||+..+ .+++||+++.+++
T Consensus 68 ~V~~~g~~pTP~~~~av~--~~~~~gGI~iTaSHn--P~~~nGiK~~~~~G~~i~~~~~~~I~~~~~~~~ 133 (443)
T TIGR01455 68 DVLLLGPLPTPAVAYLTR--TLRADAGVMISASHN--PYEDNGIKFFGPGGFKLDDATEAAIEALLDEAD 133 (443)
T ss_pred eEEEeCCcCcHHHHHHHH--hcCCCeEEEEecCCC--CcccCcEEEecCCCCcCCHHHHHHHHHHHhcCc
Confidence 999999999999999996 688999999999999 9999999998653 4899999887664
No 20
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=1.8e-30 Score=244.87 Aligned_cols=120 Identities=28% Similarity=0.245 Sum_probs=109.1
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 026863 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (232)
Q Consensus 73 ~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~ 152 (232)
.+|+++||||++++ +|||++|.+||+|||+++.. .+|+||||+|.+|++|++++++||+++
T Consensus 4 ~~Fg~~gIRG~~~~-------~ltpe~~~~lg~a~~~~l~~------------~~VvVg~D~R~ss~~l~~a~~~gL~s~ 64 (429)
T PRK14322 4 KYFGTDGIRGVFGE-------TLTDELAFKVGKALGEIVGE------------GKVIVGKDTRVSGDSLEAAISAGLTSM 64 (429)
T ss_pred ceecCCCcceecCC-------CcCHHHHHHHHHHHhEEecC------------CcEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 47999999999986 89999999999999998742 249999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcC
Q 026863 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDD 217 (232)
Q Consensus 153 Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~ 217 (232)
|++|+++|++|||+++|++. ++. +|||||||||| |++||||||+ .+ .+++||+.+++++
T Consensus 65 G~~V~~~g~~pTP~~~~av~--~~~-~gGI~ITaSHn--P~~~nGiK~~-~~G~~i~~~~~~~ie~~~~~~~ 130 (429)
T PRK14322 65 GVDVLLCGILPTPAVALLTR--ITR-SFGVVISASHN--PPEYNGIKVL-KGGYKIPDEMEVEIEERIESGY 130 (429)
T ss_pred CCeEEEecCcCHHHHHHHHh--ccC-CceEEEECCCC--ChHhCCEEEe-cCCCcCCHHHHHHHHHHHhcCC
Confidence 99999999999999999985 454 89999999999 9999999998 53 4889999988765
No 21
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.97 E-value=5.2e-30 Score=241.81 Aligned_cols=122 Identities=31% Similarity=0.406 Sum_probs=112.4
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 026863 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (232)
Q Consensus 74 lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~G 153 (232)
+|+++||||++++ +|||+++.++|+|||+++. + .+|+||||+|.+|++|+++++++|+++|
T Consensus 1 ~Fgt~giRG~~~~-------~lt~~~~~~l~~a~~~~l~-~-----------~~VvVg~D~R~~s~~l~~a~~~gL~~~G 61 (439)
T cd03087 1 LFGTSGIRGVVGE-------ELTPELALKVGKALGTYLG-G-----------GTVVVGRDTRTSGPMLKNAVIAGLLSAG 61 (439)
T ss_pred CcCcCceeeECCC-------CcCHHHHHHHHHHHHhhcc-C-----------CeEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 6999999999985 8999999999999999986 2 4699999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcCCC
Q 026863 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDDCF 219 (232)
Q Consensus 154 v~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~~~ 219 (232)
++|+++|++|||+++|++. +++ +|||||||||| |++||||||+..+ .+++||+++.+++.+
T Consensus 62 ~~V~~~g~~~tP~~~~~v~--~~~-~gGi~ItaShn--p~~~ngiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~ 129 (439)
T cd03087 62 CDVIDIGIVPTPALQYAVR--KLG-DAGVMITASHN--PPEYNGIKLVNPDGTEFSREQEEEIEEIIFSERFR 129 (439)
T ss_pred CeEEEcCccChHHHHHHHH--hcC-CceEEEEeCCC--CHHHCcEEEECCCCCcCCHHHHHHHHHHHhcCCcc
Confidence 9999999999999999996 677 99999999999 9999999998763 489999999987643
No 22
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=99.96 E-value=8.3e-30 Score=241.78 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=114.3
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 026863 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (232)
Q Consensus 74 lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~G 153 (232)
.|+++||||+++. +|||+++.++|+|||+++..... ...+|+||||+|.+|++|++++++||+++|
T Consensus 2 ~Fgt~GiRG~~~~-------~lt~~~~~~lg~a~~~~l~~~~~-------~~~~Vvvg~D~R~ss~~l~~a~~~gL~s~G 67 (461)
T cd05800 2 KFGTDGWRGIIAE-------DFTFENVRRVAQAIADYLKEEGG-------GGRGVVVGYDTRFLSEEFARAVAEVLAANG 67 (461)
T ss_pred CccCccccccccC-------CccHHHHHHHHHHHHHHHHHhCC-------CCCeEEEEeCCCcCcHHHHHHHHHHHHHCC
Confidence 4999999999985 89999999999999999975310 125799999999999999999999999999
Q ss_pred CeEEEe-ccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcCC
Q 026863 154 CLVFDM-GLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDDC 218 (232)
Q Consensus 154 v~Vidl-G~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~~ 218 (232)
++|+++ |.+|||+++|++. +++++|||||||||| |++||||||+..+ .+++||+.+++++.
T Consensus 68 ~~V~~~~g~~pTP~~~~a~~--~~~~~gGI~ITaSHn--p~~~ngiK~~~~~G~~i~~~~~~~ie~~~~~~~~ 136 (461)
T cd05800 68 IDVYLSDRPVPTPAVSWAVK--KLGAAGGVMITASHN--PPEYNGVKVKPAFGGSALPEITAAIEARLASGEP 136 (461)
T ss_pred CEEEEcCCCCCchHHHHHHH--HhCCCeeEEEccCCC--CcccCeEEEeCCCCCcCChHHHHHHHHHHhhccc
Confidence 999999 7999999999996 689999999999999 9999999998764 48999999987754
No 23
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=99.96 E-value=5.8e-29 Score=234.78 Aligned_cols=117 Identities=27% Similarity=0.309 Sum_probs=103.9
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 026863 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (232)
Q Consensus 73 ~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~ 152 (232)
.+|+++||||++++ +|||+++.+||+|||+++. .+|+||||+|.+|++|++++++||+++
T Consensus 2 ~~Fgt~gIRG~~~~-------~ltpe~~~~lg~a~g~~~~-------------~~V~Vg~D~R~ss~~l~~a~~~gL~s~ 61 (430)
T PRK14319 2 RLFGTDGIRGVVNE-------FLTPEIAFRLGNALGNMVD-------------KKIFIAKDTRASGDMLEAALVAGITSA 61 (430)
T ss_pred cccCCCCcceecCC-------CcCHHHHHHHHHHHHhccC-------------CcEEEEeCCCCChHHHHHHHHHHHHHC
Confidence 47999999999985 8999999999999999874 249999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEecc------chHHHHHHHHh
Q 026863 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFW------ISLYEIRYCCV 214 (232)
Q Consensus 153 Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~------~~~~eIe~~~~ 214 (232)
|++|+|+|++|||+++|++. ..+.|||||||||| |++||||||+.. +.+++||+..+
T Consensus 62 G~~V~d~g~~pTP~~~~~~~---~~~~gGi~ItaSHn--p~~~ngiK~~~~G~~i~~~~~~~ie~~~~ 124 (430)
T PRK14319 62 GADVYRCGVLPTPALALITK---LEDAAGVMISASHN--PPEYNGLKVLMRGYKLPDEVEERIEKEMN 124 (430)
T ss_pred CCeEEEeCCcCcHHHHHHHh---ccCceEEEEEeCCC--ChHHCCEEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999663 33459999999999 999999999843 24788887643
No 24
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=99.96 E-value=1.8e-28 Score=232.51 Aligned_cols=108 Identities=23% Similarity=0.276 Sum_probs=99.5
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCC
Q 026863 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGC 154 (232)
Q Consensus 75 Fg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv 154 (232)
|+++||||++++ +|||++|.++|+|||+++.+.. ..+|+||||+|.+|++|++++++||+++|+
T Consensus 1 f~~~giRG~~~~-------~lt~~~v~~l~~a~~~~l~~~~---------~~~VvVg~D~R~~s~~l~~a~~~gL~s~G~ 64 (445)
T PRK09542 1 IKAYDVRGVVGE-------QIDEDLVRDVGAAFARLMRAEG---------ATTVVIGHDMRDSSPELAAAFAEGVTAQGL 64 (445)
T ss_pred CCccccccccCC-------CcCHHHHHHHHHHHHHHHHHcC---------CCeEEEEeCCCCCHHHHHHHHHHHHHHCCC
Confidence 899999999985 8999999999999999997531 257999999999999999999999999999
Q ss_pred eEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEecc
Q 026863 155 LVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFW 203 (232)
Q Consensus 155 ~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~ 203 (232)
+|+++|++|||+++|++. ++++ +||||||||| |++|||+|+...
T Consensus 65 ~V~~lg~~pTP~~~~av~--~~~~-~Gi~iTaSHN--P~~~nG~Ki~~~ 108 (445)
T PRK09542 65 DVVRIGLASTDQLYFASG--LLDC-PGAMFTASHN--PAAYNGIKLCRA 108 (445)
T ss_pred EEEEeCCCCCHHHHheec--ccCC-CEEEEcCCCC--CCccCcEEEecC
Confidence 999999999999999995 6777 6899999999 999999999754
No 25
>PLN02307 phosphoglucomutase
Probab=99.96 E-value=2.1e-28 Score=239.81 Aligned_cols=132 Identities=12% Similarity=0.048 Sum_probs=109.4
Q ss_pred ccchhhHHhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHH
Q 026863 63 VVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLS 142 (232)
Q Consensus 63 ~~~~~m~~~~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La 142 (232)
++..-|. +.+||++||||++++ .+|++++.++|+|++.++..... ....|+||||+|.+|++|+
T Consensus 15 ~~~~~~~--~~~FGT~GiRG~~~~-------~l~~~~~~~ig~a~~~~~~~~~~-------~~~~VvVG~D~R~~S~~fa 78 (579)
T PLN02307 15 VPTKPIE--GQKPGTSGLRKKVKV-------FMQENYLANFVQALFNALPAEKV-------KGATLVLGGDGRYFNKEAI 78 (579)
T ss_pred ecCCCcc--CCCCcCccccccccc-------cCCHHHHHHHHHHHHHHHHhcCC-------CCCeEEEEeCCCcchHHHH
Confidence 3444454 347999999999864 79999999999977655543210 1245999999999999999
Q ss_pred HHHHHHHHHCCCeEEEe---ccCChhHHHHhhhcCCC---CCCceEEEccCCCCCC---CCCCcEEEeccc-------hH
Q 026863 143 VAVFAGLARAGCLVFDM---GLATTPACFMSTLLPPF---AYDASIMVGYMYKVNN---FNRIAIEFAFWI-------SL 206 (232)
Q Consensus 143 ~Ala~gL~a~Gv~Vidl---G~~pTP~l~yav~~~~~---~a~gGImITASHN~~P---~~~NGiK~~~~~-------~~ 206 (232)
++++++|+++|++|+++ |++|||+++|++. ++ ++++||||||||| | ++|||+|++..+ .+
T Consensus 79 ~~~a~~L~a~Gi~V~~~~~~G~~PTP~vsfav~--~~~~~~a~gGImITASHN--P~~~~eyNGiK~~~~~G~~~~~~~~ 154 (579)
T PLN02307 79 QIIIKIAAANGVRRVWVGQNGLLSTPAVSAVIR--ERDGSKANGGFILTASHN--PGGPEEDFGIKYNYESGQPAPESIT 154 (579)
T ss_pred HHHHHHHHHCCCEEEEeCCCCccCchHHHHHHH--HhcccCCCeEEEEecCCC--CCCCCCCCEEEEECCCCCcCCcHHH
Confidence 99999999999999999 7999999999996 67 8999999999999 9 899999998664 37
Q ss_pred HHHHHHHh
Q 026863 207 YEIRYCCV 214 (232)
Q Consensus 207 ~eIe~~~~ 214 (232)
++|++.+.
T Consensus 155 ~~I~~~i~ 162 (579)
T PLN02307 155 DKIYGNTL 162 (579)
T ss_pred HHHHHHHH
Confidence 77865543
No 26
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=99.95 E-value=2.3e-28 Score=237.36 Aligned_cols=125 Identities=21% Similarity=0.171 Sum_probs=108.8
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 026863 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (232)
Q Consensus 72 ~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a 151 (232)
..+||++||||+++. .+||++++.++|+||++++... + ...+|+||||+|.+|++|++++++||++
T Consensus 38 ~~~FGT~GiRG~~~~------~~lt~~~~~~i~~a~a~~~~~~-----~---~~~~VvVG~D~R~sS~~~~~a~a~gL~s 103 (543)
T TIGR01132 38 AVKFGTSGHRGSALR------GTFNEPHILAIAQAIAEYRAAQ-----G---ITGPLYIGKDTHALSEPAFISVLEVLAA 103 (543)
T ss_pred ccCCcCccccCCccc------CccCHHHHHHHHHHHHHHHHHh-----C---CCCcEEEEeCCCcCCHHHHHHHHHHHHH
Confidence 467999999999874 2699999999999999998754 2 1134999999999999999999999999
Q ss_pred CCCeEEEe---ccCChhHHHHhhhcCCCC-----CCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHh
Q 026863 152 AGCLVFDM---GLATTPACFMSTLLPPFA-----YDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCV 214 (232)
Q Consensus 152 ~Gv~Vidl---G~~pTP~l~yav~~~~~~-----a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~ 214 (232)
+|++|+++ |++|||+++|++. +++ +++||||||||| |++||||||+..+ .+++||+.+.
T Consensus 104 ~Gi~V~~~~~~G~~pTP~~~~av~--~~~~~~~~~~gGI~ITASHN--P~e~NGiK~~~~~G~~i~~~~~~~Ie~~i~ 177 (543)
T TIGR01132 104 NGVEVIVQENNGFTPTPAVSHAIL--THNKKGEPLADGIVITPSHN--PPEDGGIKYNPPNGGPADTEATQAIEDRAN 177 (543)
T ss_pred CCCEEEEeCCCCcCCchHHHHHHH--HhcccccccceEEEEeCCCC--CCccCeEEEECCCCCCCChHHHHHHHHHHH
Confidence 99999985 8999999999996 455 788999999999 9999999998664 3889988754
No 27
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=99.95 E-value=2.6e-28 Score=233.22 Aligned_cols=129 Identities=17% Similarity=0.133 Sum_probs=112.9
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 026863 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (232)
Q Consensus 74 lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~G 153 (232)
.|+++||||++++++. +||+++|.++|+|||+++.+... .....+|+||||+|.+|++|+++++++|+++|
T Consensus 3 ~Fgt~giRg~~~~~~~----~l~~~~~~~l~~a~~~~l~~~~~-----~~~~~~V~Vg~D~R~~s~~~~~a~~~gL~s~G 73 (487)
T cd05799 3 EFGTAGLRGKMGAGTN----RMNDYTVRQATQGLANYLKKKGP-----DAKNRGVVIGYDSRHNSREFAELTAAVLAANG 73 (487)
T ss_pred cccCcccccccCCCCc----cccHHHHHHHHHHHHHHHHHhcc-----cccCCeEEEEcCCCCChHHHHHHHHHHHHHCC
Confidence 5999999999986322 59999999999999999975420 00125799999999999999999999999999
Q ss_pred CeEEEec-cCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEecc-------chHHHHHHHHhh
Q 026863 154 CLVFDMG-LATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFW-------ISLYEIRYCCVT 215 (232)
Q Consensus 154 v~VidlG-~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~-------~~~~eIe~~~~~ 215 (232)
++|+++| .+|||+++|++. +++++|||||||||| |++||||||+.. +.+++||+++++
T Consensus 74 i~V~~~g~~~ptP~~~~~i~--~~~~~gGI~iTaSHn--p~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~ 139 (487)
T cd05799 74 IKVYLFDDLRPTPLLSFAVR--HLGADAGIMITASHN--PKEYNGYKVYWEDGAQIIPPHDAEIAEEIEA 139 (487)
T ss_pred CEEEEeCCCCCCcHHHHHHH--HhCCCeeEEEEeeCC--CcccCCEEEecCCCCcCCCHHHHHHHHHHHh
Confidence 9999999 999999999996 688999999999999 999999999865 347899999876
No 28
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=99.95 E-value=4.1e-28 Score=230.90 Aligned_cols=120 Identities=27% Similarity=0.253 Sum_probs=105.8
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 026863 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (232)
Q Consensus 74 lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~G 153 (232)
.|+++||||++ . +|||+++.++|+|||+++.... ....|+||||+|.+|++|+++++++|+++|
T Consensus 1 ~Fgt~GiRG~~-~-------~ltpe~~~~l~~a~~~~l~~~~--------~~~~VvVG~D~R~~s~~l~~a~~~gL~~~G 64 (459)
T cd03088 1 KFGTSGLRGLV-T-------DLTDEVCYAYTRAFLQHLESKF--------PGDTVAVGRDLRPSSPRIAAACAAALRDAG 64 (459)
T ss_pred CCCCcccceee-c-------cCCHHHHHHHHHHHHHHHHHhC--------CCCeEEEEeCCCcchHHHHHHHHHHHHHCC
Confidence 38999999998 4 8999999999999999997531 124699999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc------hHHHHHHHHh
Q 026863 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI------SLYEIRYCCV 214 (232)
Q Consensus 154 v~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~------~~~eIe~~~~ 214 (232)
++|+++|++|||+++|++. ++++ |||||||||| |++||||||+..+ .+++||+..+
T Consensus 65 v~V~~~g~~pTP~~~~a~~--~~~~-ggI~ITaSHn--p~~~nGiK~~~~~G~~~~~~e~~I~~~~~ 126 (459)
T cd03088 65 FRVVDCGAVPTPALALYAM--KRGA-PAIMVTGSHI--PADRNGLKFYRPDGEITKADEAAILAALV 126 (459)
T ss_pred CEEEEeCCCCCHHHHHHHH--HcCC-cEEEEeCCCC--CCCCCCEEEECCCCCCChHHHHHHHHHHH
Confidence 9999999999999999996 4555 8999999999 9999999998653 4777887743
No 29
>PRK07564 phosphoglucomutase; Validated
Probab=99.95 E-value=3.7e-28 Score=235.95 Aligned_cols=124 Identities=18% Similarity=0.128 Sum_probs=109.5
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 026863 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (232)
Q Consensus 72 ~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a 151 (232)
..+||++||||+++. .+||++++.+++++||+|+.++ + .+.+|+||||+|.+|++|+++++++|++
T Consensus 37 ~~~FGT~GiRg~~~~------~~lt~~~v~~i~~a~a~~~~~~-----~---~~~~VvVG~D~R~~S~~~a~a~a~gL~s 102 (543)
T PRK07564 37 DVKFGTSGHRGSSLQ------PSFNENHILAIFQAICEYRGKQ-----G---ITGPLFVGGDTHALSEPAIQSALEVLAA 102 (543)
T ss_pred CCCCcccccccccCC------CCcCHHHHHHHHHHHHHHHHhc-----C---CCCeEEEEecCCcCCHHHHHHHHHHHHH
Confidence 347999999999964 2699999999999999998753 1 1246999999999999999999999999
Q ss_pred CCCeEEEe---ccCChhHHHHhhhcCCCC-----CCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHH
Q 026863 152 AGCLVFDM---GLATTPACFMSTLLPPFA-----YDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCC 213 (232)
Q Consensus 152 ~Gv~Vidl---G~~pTP~l~yav~~~~~~-----a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~ 213 (232)
+|++|+++ |++|||+++|++. +++ ++|||||||||| |++||||||+..+ .+++||+.+
T Consensus 103 ~Gi~V~~~~~~g~~pTP~~~~av~--~~~~~~~~~~gGImITASHN--P~e~NGiK~~~~~G~~i~~~~~~~Ie~~~ 175 (543)
T PRK07564 103 NGVGVVIVGRGGYTPTPAVSHAIL--KYNGRGGGLADGIVITPSHN--PPEDGGIKYNPPNGGPADTDVTDAIEARA 175 (543)
T ss_pred CCCEEEEeCCCCcCCchHHHHHHH--HhCCCccccceeEEEecCCC--CcccCeEEEECCCCCcCChHHHHHHHHHH
Confidence 99999965 8999999999996 677 999999999999 9999999998664 378999886
No 30
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=99.95 E-value=4.3e-28 Score=237.39 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=108.4
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 026863 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (232)
Q Consensus 74 lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~G 153 (232)
.||++||||++++|.. .+|+..|.++++++|+|+.+.+.. .....+|+||||+|.+|++|+++++++|+++|
T Consensus 46 ~FGT~GiRG~~g~~~~----~~n~~~v~~~~~a~a~~l~~~~~~----~~~~~~VvVg~D~R~~S~~fa~~~a~~L~a~G 117 (584)
T PTZ00150 46 EFGTAGLRGKMGAGFN----CMNDLTVQQTAQGLCAYVIETFGQ----ALKSRGVVIGYDGRYHSRRFAEITASVFLSKG 117 (584)
T ss_pred cccCcccccccCCCCc----HHHHHHHHHHHHHHHHHHHHhccc----ccCCCcEEEEeCCCCCcHHHHHHHHHHHHHCC
Confidence 5999999999987311 478888899999999999764210 00124699999999999999999999999999
Q ss_pred CeEEEec-cCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccch-------HHHHHHHHhh
Q 026863 154 CLVFDMG-LATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWIS-------LYEIRYCCVT 215 (232)
Q Consensus 154 v~VidlG-~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~~-------~~eIe~~~~~ 215 (232)
++|+++| ++|||+++|++. +++++|||||||||| |++|||+||+..++ +++|++.++.
T Consensus 118 i~V~~~g~~~pTP~lsfav~--~~~a~gGImITASHN--P~eyNGiK~~~~~G~~i~~~~~~~i~~~Ie~ 183 (584)
T PTZ00150 118 FKVYLFGQTVPTPFVPYAVR--KLKCLAGVMVTASHN--PKEDNGYKVYWSNGAQIIPPHDKNISAKILS 183 (584)
T ss_pred CEEEEeCCCCCcHHHHHHHH--HhCCCeEEEEeccCC--CCCCCCEEEeCCCCcccCCcccHHHHHHHHH
Confidence 9999997 999999999996 789999999999999 99999999986542 4566555543
No 31
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=99.95 E-value=1e-27 Score=233.56 Aligned_cols=123 Identities=15% Similarity=0.027 Sum_probs=105.4
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 026863 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (232)
Q Consensus 73 ~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~ 152 (232)
..|+++||||++++ +||++++.++|+|++.++.... . ...+|+||||+|.+|++|+++++++|+++
T Consensus 11 ~~Fgt~giRG~~~~-------~l~~~~~~~~~~a~~~~~~~~~----~---~~~~VvVG~D~R~~S~~~a~~~a~~L~~~ 76 (548)
T cd03085 11 QKPGTSGLRKKVKV-------FQQPNYLENFVQSIFNALPPEK----L---KGATLVVGGDGRYYNKEAIQIIIKIAAAN 76 (548)
T ss_pred CCCCcccccEeecc-------ccCHHHHHHHHHHHHHHHHhcc----C---CCCeEEEEECCCcChHHHHHHHHHHHHHC
Confidence 46999999999975 8999999999998866654320 0 01369999999999999999999999999
Q ss_pred CCeEEEe---ccCChhHHHHhhhcCCCCCCceEEEccCCCCCC---CCCCcEEEeccc-------hHHHHHHHH
Q 026863 153 GCLVFDM---GLATTPACFMSTLLPPFAYDASIMVGYMYKVNN---FNRIAIEFAFWI-------SLYEIRYCC 213 (232)
Q Consensus 153 Gv~Vidl---G~~pTP~l~yav~~~~~~a~gGImITASHN~~P---~~~NGiK~~~~~-------~~~eIe~~~ 213 (232)
|++|+++ |++|||+++|++. +++++|||||||||| | ++||||||+..+ .+++|++.+
T Consensus 77 G~~V~~~~~~G~~pTP~l~fav~--~~~a~gGImITASHN--P~~~~eyNGiK~~~~~G~~i~~~~~~~I~~~i 146 (548)
T cd03085 77 GVGKVVVGQNGLLSTPAVSAVIR--KRKATGGIILTASHN--PGGPEGDFGIKYNTSNGGPAPESVTDKIYEIT 146 (548)
T ss_pred CCeEEEeCCCCccCchHHHHHHH--hcCCCeEEEEecCCC--CCCCCcCCcEEEecCCCCcCCcHHHHHHHHHH
Confidence 9999999 8999999999996 789999999999999 9 799999998664 366775543
No 32
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.94 E-value=3.3e-27 Score=228.27 Aligned_cols=124 Identities=17% Similarity=0.108 Sum_probs=105.6
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 026863 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (232)
Q Consensus 72 ~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a 151 (232)
...||++||||+++. .+||++++.++|+|||+|+.++. ...+|+||||+|..|.++++++++||++
T Consensus 20 ~~~FGT~GiRG~~g~------~~lt~~~v~~i~~a~~~~l~~~~--------~~~~VvVg~D~R~~S~~~~~~~~~gL~s 85 (522)
T cd05801 20 RVAFGTSGHRGSSLK------GSFNEAHILAISQAICDYRKSQG--------ITGPLFLGKDTHALSEPAFISALEVLAA 85 (522)
T ss_pred eeeEEcccccCccCC------CchhHHHHHHHHHHHHHHHHhhC--------CCCeEEEEeCCCcCCHHHHHHHHHHHHH
Confidence 457999999999874 26999999999999999997541 1135999999999888888888899999
Q ss_pred CCCeEEE---eccCChhHHHHhhhcCCCCCC------ceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHH
Q 026863 152 AGCLVFD---MGLATTPACFMSTLLPPFAYD------ASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCC 213 (232)
Q Consensus 152 ~Gv~Vid---lG~~pTP~l~yav~~~~~~a~------gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~ 213 (232)
+|++|++ +|++|||+++|++. +++++ |||||||||| |++||||||+..+ .+++||+.+
T Consensus 86 ~Gi~V~~~~~~g~~pTP~~~~av~--~~~~~~~~~~~gGI~ITASHN--P~~~NGiK~~~~~G~~~~~~~~~~Ie~~~ 159 (522)
T cd05801 86 NGVEVIIQQNDGYTPTPVISHAIL--TYNRGRTEGLADGIVITPSHN--PPEDGGFKYNPPHGGPADTDITRWIEKRA 159 (522)
T ss_pred CCCEEEEeCCCCCCCchHHHHHHH--HhccccccCCCcEEEEECCCC--CcccCEEEEECCCCCCCCHHHHHHHHHhh
Confidence 9999995 79999999999996 56665 5999999999 9999999998664 377788764
No 33
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3.9e-25 Score=213.48 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=116.9
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCC
Q 026863 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGC 154 (232)
Q Consensus 75 Fg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv 154 (232)
|++.|+||.+..|+. .+|+..+.+++++|++++.++.. .++..|+||||.|.+|..|+++++.++..+|+
T Consensus 62 fgt~GlRg~m~agf~----~mnel~~iq~~qg~a~yl~~~~~------~~~~giviG~D~R~~S~~fA~l~a~vf~~~g~ 131 (607)
T KOG1220|consen 62 FGTAGLRGEMRAGFS----RMNELTAIQFGQGLAAYLKNQFP------SKNLGIVIGHDGRYNSKRFAELVAAVFLLNGF 131 (607)
T ss_pred eeccccccccccCch----hhhHHHHHHHHHHHHHHHHHhCC------cccceEEEecCCccchHHHHHHHHHHHHhCCc
Confidence 999999999988644 79999999999999999998752 12357999999999999999999999999999
Q ss_pred eEEEec-cCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccch-------HHHHHHHHhhcCC
Q 026863 155 LVFDMG-LATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWIS-------LYEIRYCCVTDDC 218 (232)
Q Consensus 155 ~VidlG-~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~~-------~~eIe~~~~~e~~ 218 (232)
+|++++ ++|||++.|++. +++|++||||||||| |++|||+|+|..++ +++|...+.++..
T Consensus 132 ~v~lf~~~v~TP~vpfav~--~l~~dAgIMiTASHn--Pk~dNGyKvYwsNG~qii~PhD~~I~~~~~~nl~ 199 (607)
T KOG1220|consen 132 KVYLFSELVPTPFVPFAVL--TLGADAGIMITASHN--PKEDNGYKVYWSNGAQIISPHDEKISDSIEANLE 199 (607)
T ss_pred eEEEeccccCCCcchhHHH--HhccCceEEEeccCC--ccccCCEEEEecCCccccCchhHHHHHHHHhccC
Confidence 999998 999999999997 699999999999999 99999999997653 8899999888743
No 34
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.3e-16 Score=148.38 Aligned_cols=129 Identities=16% Similarity=0.077 Sum_probs=106.5
Q ss_pred cccccchhhHHhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChH
Q 026863 60 NEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139 (232)
Q Consensus 60 ~~~~~~~~m~~~~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~ 139 (232)
+.+.++.+-.....-||+||.||.+..+ .++|..+..+.+|+.+++.++. ...+++||+|+|..++
T Consensus 3 ~~i~~~~t~p~~~~k~GTSG~R~~~~~~------~fne~~i~a~~Qai~d~~~~~~--------~~~~L~vG~D~~~~se 68 (524)
T COG0033 3 YMIKPDPTNPYQDVKFGTSGHRGSALVF------TFNENHILAFIQAIADYRAEGG--------IGGPLVVGGDTHALSE 68 (524)
T ss_pred ceecCCCCChhhhcCCCCccccCccccC------ccCHHHHHHHHHHHHHHHhccC--------CCCceEECCCcccccH
Confidence 3344444444566679999999999864 7899999999999999987652 2368999999999999
Q ss_pred HHHHHHHHHHHHCCCeEEEe---ccCChhHHHHhhhcC--CCCC-CceEEEccCCCCCCCCCCcEEEeccc
Q 026863 140 SLSVAVFAGLARAGCLVFDM---GLATTPACFMSTLLP--PFAY-DASIMVGYMYKVNNFNRIAIEFAFWI 204 (232)
Q Consensus 140 ~La~Ala~gL~a~Gv~Vidl---G~~pTP~l~yav~~~--~~~a-~gGImITASHN~~P~~~NGiK~~~~~ 204 (232)
..-+.+++.|+++|++++.. |++|||+++++++.. +.++ .+||+||+||| |+++.|||...++
T Consensus 69 ~a~~~~lev~aANgv~~iv~~~~g~~~TPAaSh~I~t~n~k~k~~~~GIvlT~SHN--PP~D~GIKYN~~n 137 (524)
T COG0033 69 PAIQSALEVLAANGVEVIVQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHN--PPEDGGIKYNPPN 137 (524)
T ss_pred HHHHHHHHHHHhcCceEEEecCCCccCchHHHHHHHhhcccccccCCeEEEcCCCC--CcccCCcccCCCC
Confidence 99999999999999999965 699999999999732 2343 55699999999 9999999998664
No 35
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.40 E-value=2.8e-13 Score=124.83 Aligned_cols=67 Identities=24% Similarity=0.243 Sum_probs=59.6
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 026863 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (232)
Q Consensus 74 lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~G 153 (232)
+|+++||||+++. +|||++|.+||.|||+ +
T Consensus 1 ~fg~~gi~G~~n~-------~itpe~~~~lg~a~g~------------------~------------------------- 30 (355)
T cd03084 1 IFGTSGVRGVVGD-------DITPETAVALGQAIGS------------------T------------------------- 30 (355)
T ss_pred CCcccCcccccCC-------cCCHHHHHHHHHHHhc------------------c-------------------------
Confidence 6999999999985 9999999999999965 1
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcCC
Q 026863 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDDC 218 (232)
Q Consensus 154 v~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~~ 218 (232)
|||||||||| |++||||||+..+ .+++||+.+++++.
T Consensus 31 --------------------------gGI~ITaSHn--p~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~ 74 (355)
T cd03084 31 --------------------------GGIMITASHN--PPEDNGIKFVDPDGEPIASEEEKAIEDLAEKEDE 74 (355)
T ss_pred --------------------------eeEEEEeCCC--ChhHCcEEEecCCCCcCCHHHHHHHHHHHhcccc
Confidence 8999999999 9999999998653 48999999988764
No 36
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=4.1e-11 Score=113.48 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=90.9
Q ss_pred cccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCe
Q 026863 76 NGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCL 155 (232)
Q Consensus 76 g~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~ 155 (232)
|++|+|-++-+ ++ +.+.++.+++.+-.++-- ++ .+..++|||.|.|..+....+.+++.-+++|+.
T Consensus 19 GTSGLRKkvkv-F~--qpnY~eNfvQa~~~a~~~---~~--------~kgatLVVGGDGRyy~~~a~~~I~~iaAaNGv~ 84 (558)
T KOG0625|consen 19 GTSGLRKKVKV-FK--QPNYTENFVQAIMNALPG---EK--------SKGATLVVGGDGRYYNKEAIQIIAKIAAANGVG 84 (558)
T ss_pred Cccchhhccee-ec--CCchHHHHHHHHHhcccc---cc--------ccCceEEEcCCCcchhHHHHHHHHHHHhhcCcc
Confidence 78999999864 22 246777777765555410 11 134789999999999999999999999999999
Q ss_pred EEEe---ccCChhHHHHhhhcCCCCCCceEEEccCCCCC-CCCCCcEEEeccc
Q 026863 156 VFDM---GLATTPACFMSTLLPPFAYDASIMVGYMYKVN-NFNRIAIEFAFWI 204 (232)
Q Consensus 156 Vidl---G~~pTP~l~yav~~~~~~a~gGImITASHN~~-P~~~NGiK~~~~~ 204 (232)
-+.+ |+.+||+++..++. ..++.|||++||||||+ |.++-||||...+
T Consensus 85 rlivGqnGiLSTPAvS~iIRk-~~ka~GGiILTASHnPGGP~~DfGIKfN~~N 136 (558)
T KOG0625|consen 85 RLIVGQNGILSTPAVSCIIRK-YIKAGGGIILTASHNPGGPEGDFGIKFNLEN 136 (558)
T ss_pred eEEeccCCcccchHHHHHHHh-hcccCceEEEEeccCCCCCCCccceEEecCC
Confidence 8876 69999999987752 22788899999999999 9999999998553
No 37
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=98.82 E-value=6.7e-09 Score=101.32 Aligned_cols=54 Identities=35% Similarity=0.484 Sum_probs=49.7
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhhhcCCCCCCc
Q 026863 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDA 180 (232)
Q Consensus 125 ~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav~~~~~~a~g 180 (232)
..+|+||||+|.+|++|++++++||.+.|++|+|+|.+|||+++|++. .+++.|
T Consensus 102 ~~~V~vg~D~R~ss~~l~~a~~~gl~~~G~~V~d~g~~~TP~~~~~v~--~~~~~g 155 (513)
T cd03086 102 PANVFVGRDTRPSGPALLQALLDGLKALGGNVIDYGLVTTPQLHYLVR--AANTEG 155 (513)
T ss_pred CCEEEEEeCCChhHHHHHHHHHHHHHHCCCeEEEccCcCcHHHHHHHH--hcCCCC
Confidence 478999999999999999999999999999999999999999999996 566543
No 38
>PLN02895 phosphoacetylglucosamine mutase
Probab=98.80 E-value=7.6e-09 Score=101.98 Aligned_cols=48 Identities=38% Similarity=0.566 Sum_probs=46.6
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhhh
Q 026863 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTL 172 (232)
Q Consensus 125 ~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav~ 172 (232)
..+|+||||+|+||+.|++++++||.+.|++|+|+|++|||+++|++.
T Consensus 127 ~~~V~vG~DtR~Ss~~l~~a~~~gl~~~G~~v~d~G~~tTP~l~~~v~ 174 (562)
T PLN02895 127 PAEVLLGRDTRPSGPALLAAALKGVRAIGARAVDMGILTTPQLHWMVR 174 (562)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHHCCCCEEEeCcCCcHHHHHHHH
Confidence 478999999999999999999999999999999999999999999996
No 39
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=98.78 E-value=9.4e-09 Score=101.77 Aligned_cols=48 Identities=35% Similarity=0.537 Sum_probs=46.2
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHH-HCCCeEEEeccCChhHHHHhhh
Q 026863 125 DVKVSLGKDPRVSGPSLSVAVFAGLA-RAGCLVFDMGLATTPACFMSTL 172 (232)
Q Consensus 125 ~~~VvVGrD~R~SS~~La~Ala~gL~-a~Gv~VidlG~~pTP~l~yav~ 172 (232)
...|+||||+|.||++|++++++||. +.|++|+|+|++|||+++|++.
T Consensus 152 ~~~V~vGrDtR~Ss~~L~~al~~gl~~~~G~~v~d~G~~tTP~l~y~v~ 200 (585)
T PTZ00302 152 KAKVHVGRDTRPSSPELVSALLRGLKLLIGSNVRNFGIVTTPQLHFLVA 200 (585)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHhcCCcEEEeCCCCcHHHHHHHH
Confidence 46799999999999999999999999 9999999999999999999996
No 40
>PLN02895 phosphoacetylglucosamine mutase
Probab=98.05 E-value=6.5e-06 Score=81.48 Aligned_cols=51 Identities=8% Similarity=-0.137 Sum_probs=41.9
Q ss_pred HHHHHHHHHHCCCeEEEe-ccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc
Q 026863 142 SVAVFAGLARAGCLVFDM-GLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI 204 (232)
Q Consensus 142 a~Ala~gL~a~Gv~Vidl-G~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~ 204 (232)
-+..+..|.+.|+.|..+ .+.|| ++++++||||||||| |++|||+|++.++
T Consensus 31 FR~~a~~l~~~~~r~~~~~~~r~~----------~~~~~~gVmITaSHn--p~~~nG~K~~~~~ 82 (562)
T PLN02895 31 FRTDASLLESTVFRVGILAALRSL----------KTGAATGLMITASHN--PVSDNGVKIVDPS 82 (562)
T ss_pred hHHHHHHHHhcCeEEEEeCCCCcc----------ccCCCcEEEEeCCCC--CcccCcEEEECCC
Confidence 345678999999999977 56666 136789999999999 9999999998663
No 41
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=97.88 E-value=1.1e-05 Score=78.99 Aligned_cols=37 Identities=5% Similarity=-0.163 Sum_probs=29.9
Q ss_pred CceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcC
Q 026863 179 DASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDD 217 (232)
Q Consensus 179 ~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~ 217 (232)
.+||||||||| |++|||+|+.... .+++||+..+.++
T Consensus 36 ~~gimITaSHN--P~~~NGiK~~~~~g~~~~~~~~~~~~~~~~~~~ 79 (513)
T cd03086 36 TIGVMITASHN--PVEDNGVKIVDPDGEMLEESWEPYATQLANASD 79 (513)
T ss_pred ceEEEECCCcC--CcccCeEEEEcCCCCCCCHHHHHHHHHHhhCCC
Confidence 57999999999 9999999998653 2567777666554
No 42
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=97.87 E-value=1.2e-05 Score=79.87 Aligned_cols=37 Identities=3% Similarity=-0.217 Sum_probs=31.4
Q ss_pred CCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhc
Q 026863 178 YDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTD 216 (232)
Q Consensus 178 a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e 216 (232)
+.+||||||||| |++|||+|++.++ .+++|+++++..
T Consensus 75 ~~~GImiTASHN--p~~~NG~K~~~~~G~~l~~~~~~~i~~~~n~~ 118 (585)
T PTZ00302 75 KSVGVMITASHN--PIQDNGVKIIDPDGGMLEESWEKICTDFANAR 118 (585)
T ss_pred cceeEEEeCCCC--CcccCCEEEECCCCCcCCCcHHHHHHHHHhcc
Confidence 578999999999 9999999998763 478888877754
No 43
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=97.60 E-value=5.8e-05 Score=73.47 Aligned_cols=49 Identities=33% Similarity=0.361 Sum_probs=46.2
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhhhc
Q 026863 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLL 173 (232)
Q Consensus 125 ~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav~~ 173 (232)
..+|++|||+|.+|+.|.+++..++....+.+.|+|+++||+++|.+..
T Consensus 124 ~~~v~~G~DtR~s~~~L~~~~~~~~~~l~a~~~d~GvvtTPqLHy~v~~ 172 (539)
T KOG2537|consen 124 SAHVVVGRDTRPSSPRLLNAVRDGVGALFAQVDDYGVVTTPQLHYMVRA 172 (539)
T ss_pred cceEEEecCCCCccHHHHHHHHHHHHhhheEecceEEEcchhhhhhhhh
Confidence 4789999999999999999999999999999999999999999999964
No 44
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=95.57 E-value=0.0051 Score=60.23 Aligned_cols=25 Identities=4% Similarity=-0.051 Sum_probs=21.8
Q ss_pred CCCceEEEccCCCCCCCCCCcEEEecc
Q 026863 177 AYDASIMVGYMYKVNNFNRIAIEFAFW 203 (232)
Q Consensus 177 ~a~gGImITASHN~~P~~~NGiK~~~~ 203 (232)
+..-|+||||||| |.++||+|+..+
T Consensus 58 gs~IGvMiTASHN--p~~dNGvKivd~ 82 (539)
T KOG2537|consen 58 GSTIGVMITASHN--PVEDNGVKIVDP 82 (539)
T ss_pred CCeeEEEEEeccC--chhhcCccccCC
Confidence 4456999999999 999999999855
No 45
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=87.25 E-value=2.6 Score=36.14 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=42.7
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccC-----ChhHHHHhhh--cCCCCCCceEEEccCC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-----TTPACFMSTL--LPPFAYDASIMVGYMY 188 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~-----pTP~l~yav~--~~~~~a~gGImITASH 188 (232)
+|+||.|. .|..|++.+.+-|.+.|++|.|+|.- .-|-+...+. .....++-||+|-++-
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTG 68 (171)
T TIGR01119 2 KIAIGCDH--IVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTG 68 (171)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 48999884 68999999999999999999999952 2343333222 1123466788887754
No 46
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=87.22 E-value=2.8 Score=35.26 Aligned_cols=61 Identities=21% Similarity=0.180 Sum_probs=44.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHH--CCCeEEEecc-----CChhHHHHhhh--cCCCCCCceEEEccCC
Q 026863 126 VKVSLGKDPRVSGPSLSVAVFAGLAR--AGCLVFDMGL-----ATTPACFMSTL--LPPFAYDASIMVGYMY 188 (232)
Q Consensus 126 ~~VvVGrD~R~SS~~La~Ala~gL~a--~Gv~VidlG~-----~pTP~l~yav~--~~~~~a~gGImITASH 188 (232)
.+|+||.|. .|..|++.+.+-|.. .|++|+|+|. +.-|.+...+. .....++-||+|-++-
T Consensus 3 mkI~igsDh--aG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGtG 72 (151)
T PTZ00215 3 KKVAIGSDH--AGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSG 72 (151)
T ss_pred cEEEEEeCC--chHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 469999985 689999999999999 9999999985 23444433322 1123456688888764
No 47
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=86.94 E-value=2.5 Score=34.98 Aligned_cols=60 Identities=23% Similarity=0.256 Sum_probs=44.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccCC-----hhHHHHhhh--cCCCCCCceEEEccCC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT-----TPACFMSTL--LPPFAYDASIMVGYMY 188 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~p-----TP~l~yav~--~~~~~a~gGImITASH 188 (232)
+|+||.|. .+..|++.+.+-|...|++|.|+|.-. =|.+.+.+. .....++-||+|-++-
T Consensus 1 KI~igsDh--~g~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgtG 67 (140)
T PF02502_consen 1 KIAIGSDH--AGFELKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGTG 67 (140)
T ss_dssp EEEEEE-G--GGHHHHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred CEEEEeCH--HHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCCC
Confidence 48899884 689999999999999999999999665 454444332 1134567788888764
No 48
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=86.65 E-value=3.6 Score=34.21 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=44.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc---CChhHHHHhhh--cCCCCCCceEEEccCC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL---ATTPACFMSTL--LPPFAYDASIMVGYMY 188 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~---~pTP~l~yav~--~~~~~a~gGImITASH 188 (232)
+|+||.|. .|..|++.+.+-|...|++|+|+|. +--|-+.+.+. .....++-||+|-++-
T Consensus 2 kI~IgsDh--~G~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~~~GIliCGtG 66 (141)
T TIGR01118 2 AIIIGSDL--AGKRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNLGIVIDAYG 66 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCC
Confidence 48899884 6899999999999999999999996 33355544332 1123567788887764
No 49
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=86.30 E-value=3.9 Score=34.08 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=44.9
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc---CChhHHHHhhh--cCCCCCCceEEEccCCC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL---ATTPACFMSTL--LPPFAYDASIMVGYMYK 189 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~---~pTP~l~yav~--~~~~~a~gGImITASHN 189 (232)
+|+||.|. .|..|++.+.+-|.+.|++|.|+|. +.-|.+...+. .....++-||.|-++-.
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGi 67 (142)
T PRK08621 2 AIIIGADK--AGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGA 67 (142)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCh
Confidence 48899884 6899999999999999999999996 34455554432 11234567888877653
No 50
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=86.21 E-value=4 Score=33.97 Aligned_cols=61 Identities=18% Similarity=0.124 Sum_probs=44.6
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccCC--hhHHHHhhh--cCCCCCCceEEEccCCC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT--TPACFMSTL--LPPFAYDASIMVGYMYK 189 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~p--TP~l~yav~--~~~~~a~gGImITASHN 189 (232)
+|.||.|. .|..|++.+.+-|.+.|++|+|+|.-+ -|-+...+. .....++-||+|-++-.
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGi 66 (141)
T PRK12613 2 AIILGADA--HGNALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGA 66 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCH
Confidence 48899884 689999999999999999999999633 355444332 11234677888877653
No 51
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=85.94 E-value=4.4 Score=33.91 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=43.1
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccC------ChhHHHHhhh--cCCCCCCceEEEccCC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA------TTPACFMSTL--LPPFAYDASIMVGYMY 188 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~------pTP~l~yav~--~~~~~a~gGImITASH 188 (232)
+|+||.|. .|..|++.+.+-|...|++|+|+|.- .-|.+...+. .....++-||.|-++-
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtG 69 (148)
T PRK05571 2 KIAIGSDH--AGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTG 69 (148)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 58999885 68999999999999999999999852 2333333222 1123467788888764
No 52
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=85.38 E-value=3.6 Score=34.26 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=42.9
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc-----CChhHHHHhhh--cCCCCCCceEEEccCC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-----ATTPACFMSTL--LPPFAYDASIMVGYMY 188 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~-----~pTP~l~yav~--~~~~~a~gGImITASH 188 (232)
+|+||.|. .|..|++.+.+-|.+.|++|+|+|. +.-|.+...+. .....++-||+|-++-
T Consensus 1 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtG 67 (143)
T TIGR01120 1 KIAIGSDH--AGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTG 67 (143)
T ss_pred CEEEEeCc--chHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCc
Confidence 37889884 6899999999999999999999986 23344433322 1123467788887754
No 53
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=82.77 E-value=6.7 Score=32.78 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=44.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc------CChhHHHHhhh--cCCCCCCceEEEccCCC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL------ATTPACFMSTL--LPPFAYDASIMVGYMYK 189 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~------~pTP~l~yav~--~~~~~a~gGImITASHN 189 (232)
+|.||.|. .+..|++.+..-|...|++|.|+|. ..-|-+...+. .....++-||+|-++-.
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGi 70 (148)
T TIGR02133 2 RVVLGHDH--AGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGN 70 (148)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCCh
Confidence 48888884 6899999999999999999999995 22344444332 11234677888888754
No 54
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=82.76 E-value=5.4 Score=34.29 Aligned_cols=60 Identities=20% Similarity=0.110 Sum_probs=43.8
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc-----CChhHHHHhhh--cCCCCCCceEEEccCC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-----ATTPACFMSTL--LPPFAYDASIMVGYMY 188 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~-----~pTP~l~yav~--~~~~~a~gGImITASH 188 (232)
+|+||.|. .|-.|++.+.+-|.+.|++|+|+|. +.-|-+.+.+. .....++-||+|-++-
T Consensus 2 kI~IgsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGTG 68 (171)
T PRK08622 2 KIAIGCDH--IVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTG 68 (171)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCCc
Confidence 48899885 6889999999999999999999995 23454444332 1123467788887754
No 55
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=81.40 E-value=6.6 Score=33.74 Aligned_cols=60 Identities=20% Similarity=0.054 Sum_probs=43.1
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccC-----ChhHHHHhhh--cCCCCCCceEEEccCC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-----TTPACFMSTL--LPPFAYDASIMVGYMY 188 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~-----pTP~l~yav~--~~~~~a~gGImITASH 188 (232)
+|+||.|. .|..|++.+.+-|.+.|++|+|+|.- .-|-+.+.+. .....++-||+|-++-
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTG 68 (171)
T PRK12615 2 KIAIGCDH--IVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTG 68 (171)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 48999885 68999999999999999999999852 3444444332 1123456788877654
No 56
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=78.95 E-value=6.8 Score=32.65 Aligned_cols=59 Identities=19% Similarity=0.225 Sum_probs=41.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc-----CChhHHHHhhh--cCCCCCCceEEEccCC
Q 026863 128 VSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-----ATTPACFMSTL--LPPFAYDASIMVGYMY 188 (232)
Q Consensus 128 VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~-----~pTP~l~yav~--~~~~~a~gGImITASH 188 (232)
|+||.| +.|..|++.+.+-|.+.|++|.|+|. +.-|-+.+.+. .....++-||+|-++-
T Consensus 1 I~igsD--haG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtG 66 (144)
T TIGR00689 1 IAIGSD--HAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTG 66 (144)
T ss_pred CEEeeC--cchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCc
Confidence 467777 46899999999999999999999986 23344333322 1123467788887764
No 57
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=76.36 E-value=12 Score=30.70 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=34.8
Q ss_pred EEecCCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEcc
Q 026863 130 LGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGY 186 (232)
Q Consensus 130 VGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITA 186 (232)
|+-|.+--|. ..+...|.++|++|+|+|..-+|.-...... ..+++. |.+++
T Consensus 9 v~~D~HdiGk---~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~-~~~adi-VglS~ 60 (134)
T TIGR01501 9 IGSDCHAVGN---KILDHAFTNAGFNVVNLGVLSPQEEFIKAAI-ETKADA-ILVSS 60 (134)
T ss_pred ecCChhhHhH---HHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCE-EEEec
Confidence 4567776666 4466788999999999998777666554432 345443 55554
No 58
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=70.05 E-value=20 Score=34.61 Aligned_cols=74 Identities=20% Similarity=0.242 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC-CCChHHHHHHHHHHHHHCCCeEEEeccCC--hhHHHHhhhcCCC
Q 026863 100 VEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP-RVSGPSLSVAVFAGLARAGCLVFDMGLAT--TPACFMSTLLPPF 176 (232)
Q Consensus 100 v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~-R~SS~~La~Ala~gL~a~Gv~VidlG~~p--TP~l~yav~~~~~ 176 (232)
..++..+|-+|..... ..+|+|-+|+ .-+.+.+++|++++|++.|++|....+.. .-.+.=. .
T Consensus 230 ~~~i~~~Y~~W~~~~~---------~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~-----i 295 (388)
T COG0426 230 PKEIVEAYRDWAEGQP---------KGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEE-----I 295 (388)
T ss_pred HHHHHHHHHHHHccCC---------cceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHH-----H
Confidence 4567778888876541 2369999995 47899999999999999999998654333 2222212 2
Q ss_pred CCCceEEEccC
Q 026863 177 AYDASIMVGYM 187 (232)
Q Consensus 177 ~a~gGImITAS 187 (232)
....|++|-.+
T Consensus 296 ~~a~~~vvGsP 306 (388)
T COG0426 296 LDAKGLVVGSP 306 (388)
T ss_pred hhcceEEEecC
Confidence 23446777765
No 59
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=68.68 E-value=35 Score=27.73 Aligned_cols=56 Identities=23% Similarity=0.347 Sum_probs=35.5
Q ss_pred CeEEEE---ecCCCChHHHHHHHHHHHHHCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEccC
Q 026863 126 VKVSLG---KDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMVGYM 187 (232)
Q Consensus 126 ~~VvVG---rD~R~SS~~La~Ala~gL~a~Gv~VidlG~-~pTP~l~yav~~~~~~a~gGImITAS 187 (232)
.+|++| -|.+.-|.. .++..|.+.|++|+++|. +|...+.-++. +.+++ .|.++++
T Consensus 4 ~~vl~~~~~gD~H~lG~~---iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~--~~~~d-~V~lS~~ 63 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNK---ILDRALTEAGFEVINLGVMTSQEEFIDAAI--ETDAD-AILVSSL 63 (137)
T ss_pred CEEEEEeCCCChhHHHHH---HHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEcCc
Confidence 456665 465555554 456678899999999996 55566654543 34444 3666653
No 60
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=67.35 E-value=11 Score=31.91 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=40.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccC-Ch-----hHHHHhhh--cCCCCCCceEEEccC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-TT-----PACFMSTL--LPPFAYDASIMVGYM 187 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~-pT-----P~l~yav~--~~~~~a~gGImITAS 187 (232)
+|.||.| .++..|++.+..-|.+.|++|+|+|.. ++ |-+...+. .....++-||.|-+.
T Consensus 2 kIaig~D--hag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGT 68 (151)
T COG0698 2 KIAIGSD--HAGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGT 68 (151)
T ss_pred cEEEEcC--cccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecC
Confidence 4888988 478999999999999999999999743 44 22222211 001246667777653
No 61
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=66.26 E-value=12 Score=30.51 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=34.0
Q ss_pred EEecCCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEcc
Q 026863 130 LGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGY 186 (232)
Q Consensus 130 VGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITA 186 (232)
|+-|.+--+. ..++..|.++|++|+|+|..-+|.-...... ..+++ -|.+++
T Consensus 7 v~gD~HdiGk---niv~~~L~~~GfeVidLG~~v~~e~~v~aa~-~~~ad-iVglS~ 58 (128)
T cd02072 7 IGSDCHAVGN---KILDHAFTEAGFNVVNLGVLSPQEEFIDAAI-ETDAD-AILVSS 58 (128)
T ss_pred eCCchhHHHH---HHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCC-EEEEec
Confidence 4556665555 4566788899999999998666665544432 34544 355555
No 62
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=65.43 E-value=32 Score=27.82 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=32.6
Q ss_pred EEecCCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccC
Q 026863 130 LGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYM 187 (232)
Q Consensus 130 VGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITAS 187 (232)
+|-|.+--+. ..++..|.++|++|+++|.-.+|.-.-... .+.+++ .|.|++.
T Consensus 10 ~g~D~Hd~g~---~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa-~e~~ad-ii~iSsl 62 (132)
T TIGR00640 10 MGQDGHDRGA---KVIATAYADLGFDVDVGPLFQTPEEIARQA-VEADVH-VVGVSSL 62 (132)
T ss_pred eCCCccHHHH---HHHHHHHHhCCcEEEECCCCCCHHHHHHHH-HHcCCC-EEEEcCc
Confidence 3445555554 445677889999999999766665443332 234544 3666663
No 63
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=64.95 E-value=20 Score=30.03 Aligned_cols=44 Identities=27% Similarity=0.346 Sum_probs=31.6
Q ss_pred CCeEEEE---ecCCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhh
Q 026863 125 DVKVSLG---KDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST 171 (232)
Q Consensus 125 ~~~VvVG---rD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav 171 (232)
+.+|+|+ -|.+.-+ +..++..|++.|++|++.|...||.=....
T Consensus 12 rprvlvak~GlDgHd~g---akvia~~l~d~GfeVi~~g~~~tp~e~v~a 58 (143)
T COG2185 12 RPRVLVAKLGLDGHDRG---AKVIARALADAGFEVINLGLFQTPEEAVRA 58 (143)
T ss_pred CceEEEeccCccccccc---hHHHHHHHHhCCceEEecCCcCCHHHHHHH
Confidence 4677664 4555444 345678899999999999999999765443
No 64
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=57.90 E-value=56 Score=27.93 Aligned_cols=61 Identities=15% Similarity=-0.063 Sum_probs=39.1
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEccCC
Q 026863 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMVGYMY 188 (232)
Q Consensus 125 ~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~-~pTP~l~yav~~~~~~a~gGImITASH 188 (232)
+.+|+++.=.--.-..=+..+...|.+.|++|+++|. +|...+--++. +.+.+ -|.++++-
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~--~~~pd-~v~lS~~~ 145 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK--KEKPL-MLTGSALM 145 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH--HcCCC-EEEEcccc
Confidence 3577776544333333345566788899999999995 66666655553 45544 47777763
No 65
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=56.16 E-value=64 Score=28.15 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=38.5
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEccC
Q 026863 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMVGYM 187 (232)
Q Consensus 125 ~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~-~pTP~l~yav~~~~~~a~gGImITAS 187 (232)
..+|++|.=.----..=+..++.-|.+.|++|+|+|. +|...+--++. +.+.+ -|.++++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~--~~~~~-~V~lS~~ 148 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK--EHKAD-IIGLSGL 148 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEccc
Confidence 4678888533333333345567778899999999995 77777765553 44544 3555554
No 66
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=55.27 E-value=31 Score=24.79 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=31.1
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEe
Q 026863 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (232)
Q Consensus 126 ~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~Vidl 159 (232)
.+|++..|.-..|...++.+.+-|...|++|..+
T Consensus 44 ~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 44 KEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4799999999999999999999999999998753
No 67
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=54.96 E-value=1.2e+02 Score=26.68 Aligned_cols=91 Identities=15% Similarity=-0.035 Sum_probs=60.0
Q ss_pred eEEEEec------CCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhh-----hcCCCCCCceEEEccCCCCCCCCC
Q 026863 127 KVSLGKD------PRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST-----LLPPFAYDASIMVGYMYKVNNFNR 195 (232)
Q Consensus 127 ~VvVGrD------~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav-----~~~~~~a~gGImITASHN~~P~~~ 195 (232)
-++|+.. .|..+..=++++...|...|++|...--.+.-.+.-++ ...+..+++.+++-+||- - .
T Consensus 11 alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG--~--~ 86 (241)
T smart00115 11 ALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHG--E--E 86 (241)
T ss_pred EEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCC--C--C
Confidence 4677765 56777778899999999999999976555555444332 111235788999999996 2 2
Q ss_pred CcEEEeccc--hHHHHHHHHhhcCCCcc
Q 026863 196 IAIEFAFWI--SLYEIRYCCVTDDCFSL 221 (232)
Q Consensus 196 NGiK~~~~~--~~~eIe~~~~~e~~~~~ 221 (232)
|.+.-.+.. ...+|.+.+....|.+|
T Consensus 87 ~~l~~~D~~~v~l~~i~~~f~~~~c~~L 114 (241)
T smart00115 87 GGIYGTDHSPLPLDEIFSLFNGDNCPSL 114 (241)
T ss_pred CeEEEecCCEEEHHHHHHhccccCChhh
Confidence 433332221 35678888877667654
No 68
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=48.22 E-value=1e+02 Score=26.28 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=37.3
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHHCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEccC
Q 026863 125 DVKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMVGYM 187 (232)
Q Consensus 125 ~~~VvVGr---D~R~SS~~La~Ala~gL~a~Gv~VidlG~-~pTP~l~yav~~~~~~a~gGImITAS 187 (232)
..+|+++. |.+.-|.. .++..|...|++|+++|. +|...+--++. +.+.+ -|-++.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~---~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~--~~~~d-~v~lS~~ 142 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKN---LVATMLEANGFEVIDLGRDVPPEEFVEAVK--EHKPD-ILGLSAL 142 (201)
T ss_pred CCeEEEEecCCccchHHHH---HHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEecc
Confidence 35777764 55555544 456688899999999995 66666665553 44444 4666664
No 69
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=47.76 E-value=66 Score=25.58 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeE
Q 026863 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLV 156 (232)
Q Consensus 95 LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~V 156 (232)
=|-+.+..+|..+|+.+.+. | ...|++++-...-.-.+ .+++.++...|+++
T Consensus 68 ~n~~aa~~vG~lla~ra~~~-----g----i~~v~fdr~~~~y~grv-~a~~~~~re~Gl~f 119 (119)
T PF00861_consen 68 KNVEAAYLVGELLAKRALEK-----G----IAKVVFDRGGYKYHGRV-KALADGAREGGLEF 119 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHT-----T----SSEEEECTSTSSSSSHH-HHHHHHHHHTTCB-
T ss_pred CCEehHHHHHHHHHHHHHHc-----C----CcEEEEcCCCCcccHHH-HHHHHHHHHcCCCC
Confidence 35688999999999988765 3 36788888775444444 46699999999875
No 70
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=46.28 E-value=21 Score=33.86 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=29.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCeEE
Q 026863 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (232)
Q Consensus 126 ~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~Vi 157 (232)
++|+|+.|.-++|+.++.-+.+-|.++|++|.
T Consensus 68 ~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 68 SEVILLTDFDRAGRVYAKNIMEEFQSRGIKVN 99 (360)
T ss_pred CEEEEEECCCCCCCccchHHHHHHHHCCCEEE
Confidence 68999999999999999999999999999993
No 71
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=44.75 E-value=1.3e+02 Score=23.51 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=31.4
Q ss_pred EecCCCChHHHHHHHHHHHHHCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEccC
Q 026863 131 GKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMVGYM 187 (232)
Q Consensus 131 GrD~R~SS~~La~Ala~gL~a~Gv~VidlG~-~pTP~l~yav~~~~~~a~gGImITAS 187 (232)
+-|.+.-+..+ +...|...|++|+++|. +|+..+.-++. +.+++ .|.|+.+
T Consensus 8 ~gd~H~lG~~~---~~~~l~~~G~~vi~lG~~vp~e~~~~~a~--~~~~d-~V~iS~~ 59 (122)
T cd02071 8 GLDGHDRGAKV---IARALRDAGFEVIYTGLRQTPEEIVEAAI--QEDVD-VIGLSSL 59 (122)
T ss_pred CCChhHHHHHH---HHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEccc
Confidence 34555555444 44568899999999985 66665544443 44444 4666665
No 72
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=42.93 E-value=1.3e+02 Score=25.34 Aligned_cols=59 Identities=8% Similarity=0.123 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc
Q 026863 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL 161 (232)
Q Consensus 94 ~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~ 161 (232)
+.+......|+.-+.+.|.+.+. ..+.++.+-+|+ +..|..++.+.|+..|+-|+....
T Consensus 27 ~~s~~~a~~iA~D~v~qL~~~yp------PA~Tt~~l~q~~---~D~Fg~aL~~aLR~~GYaV~e~~~ 85 (151)
T PRK13883 27 QASAADQQKLATDAVQQLATLYP------PAQTRFELQQPT---PDAFGQALVKALRDKGYALLEYNP 85 (151)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCC------CcceEEEEecCC---CcHHHHHHHHHHHHcCeEEEecCC
Confidence 67888889999999998887653 234688887776 478889999999999999996543
No 73
>PLN02739 serine acetyltransferase
Probab=41.89 E-value=20 Score=34.24 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCC
Q 026863 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR 135 (232)
Q Consensus 93 ~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R 135 (232)
.|+|+++..+++.+|+..++.+ ++|+||+|..
T Consensus 322 ~DaT~e~~~~Ia~ay~~lf~~g-----------~sI~~g~~~~ 353 (355)
T PLN02739 322 YDATREFFQNVAVAYRETIPNG-----------SSVSGSCREK 353 (355)
T ss_pred hhhhHHHHHHHHHHHHhhccCC-----------CeEEeecccc
Confidence 4799999999999999988753 7899999864
No 74
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=40.42 E-value=23 Score=25.56 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=23.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCeEEE
Q 026863 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (232)
Q Consensus 126 ~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~Vid 158 (232)
..|++..|.-..|+..+..+...|...|++|..
T Consensus 47 ~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~ 79 (81)
T PF13662_consen 47 KEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTR 79 (81)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHG--------
T ss_pred ceEEEEeCcCHHHHHHHHHHHHHHHhhcccccc
Confidence 579999999999999999999999999999864
No 75
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=39.79 E-value=3.1e+02 Score=25.34 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=52.3
Q ss_pred eeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC-CeEEEe
Q 026863 81 RGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG-CLVFDM 159 (232)
Q Consensus 81 RGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~G-v~Vidl 159 (232)
|.-+..|..++...++++.+.+++..+...+... + .+++|- -.|.+.+.+..++.+.+.... +.++ -
T Consensus 148 ~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~-----~-----~~~~vt-tSRRTp~~~~~~L~~~~~~~~~~~~~-~ 215 (311)
T PF06258_consen 148 RVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAY-----G-----GSLLVT-TSRRTPPEAEAALRELLKDNPGVYIW-D 215 (311)
T ss_pred eEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhC-----C-----CeEEEE-cCCCCcHHHHHHHHHhhcCCCceEEe-c
Confidence 3333444455556788888888888887777654 1 234443 367777777777777765433 3334 3
Q ss_pred ccCChhHHHHhhhcCCCCCCceEEEccC
Q 026863 160 GLATTPACFMSTLLPPFAYDASIMVGYM 187 (232)
Q Consensus 160 G~~pTP~l~yav~~~~~~a~gGImITAS 187 (232)
+.-+.|...|.. ....|.||+.
T Consensus 216 ~~~~nPy~~~La------~ad~i~VT~D 237 (311)
T PF06258_consen 216 GTGENPYLGFLA------AADAIVVTED 237 (311)
T ss_pred CCCCCcHHHHHH------hCCEEEEcCc
Confidence 444566554332 2345788874
No 76
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=36.65 E-value=1.8e+02 Score=27.42 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCC-ChHHHHHHHHHHHH--HCCCeEEEecc
Q 026863 100 VEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV-SGPSLSVAVFAGLA--RAGCLVFDMGL 161 (232)
Q Consensus 100 v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~-SS~~La~Ala~gL~--a~Gv~VidlG~ 161 (232)
..++-..|-+|.... .+++|+|-+++.. +.+++++++++|+. ..|++|..+.+
T Consensus 231 ~~~~~~~Y~~~~~~~---------~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~ 286 (394)
T PRK11921 231 PLQIVEKYLEWAANY---------QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNS 286 (394)
T ss_pred HHHHHHHHHHHhhcC---------CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEEC
Confidence 444555566665432 2367999999984 78999999999999 78988864443
No 77
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.35 E-value=2.2e+02 Score=23.68 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=42.9
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEccCCC
Q 026863 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMVGYMYK 189 (232)
Q Consensus 126 ~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~-~pTP~l~yav~~~~~~a~gGImITASHN 189 (232)
.-.++|+..-...+.-.+.+++.+.++|-+++.+|+ +|.-.....-. +.....+|+|+...-
T Consensus 74 ~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~--~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 74 GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARH--RQRLPAGVIIGVGGA 136 (172)
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH--HHHCCCCEEEEECch
Confidence 346777777666888889999999999999999996 66656543332 122344577766543
No 78
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=36.02 E-value=1.8e+02 Score=24.42 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEE
Q 026863 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (232)
Q Consensus 93 ~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~Vid 158 (232)
.++|......|+.=..+.|.+... ....++.+-+|+- .|..++.+.|+..|+-|+-
T Consensus 32 ~~~t~~aa~~iA~D~vsqLae~~p------Pa~tt~~l~q~~d----~Fg~aL~~aLr~~GYaVvt 87 (145)
T PRK13835 32 AELSGPAASAIAGDMVSRLAEQIG------PGTTTIKLKKDTS----PFGQALEAALKGWGYAVVT 87 (145)
T ss_pred hhhcchHHHHHHHHHHHHHHHhcC------CCceEEEEeecCc----HHHHHHHHHHHhcCeEEee
Confidence 467777788888888888877642 2347899999992 8889999999999999994
No 79
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=35.79 E-value=56 Score=27.74 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=35.3
Q ss_pred EecCCCChHHHHHHHHHHHHH---CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccC
Q 026863 131 GKDPRVSGPSLSVAVFAGLAR---AGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYM 187 (232)
Q Consensus 131 GrD~R~SS~~La~Ala~gL~a---~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITAS 187 (232)
+.++|++..+..++++..|.. .|..|+|+ .+=|-++.+-.+ +.||.-.+.|=-+
T Consensus 18 ~~~~RPT~drvrealFniL~~~~~~g~~vLDL-FaGSGalGlEAL--SRGA~~v~fVE~~ 74 (183)
T PF03602_consen 18 GDNTRPTTDRVREALFNILQPRNLEGARVLDL-FAGSGALGLEAL--SRGAKSVVFVEKN 74 (183)
T ss_dssp --TS-SSSHHHHHHHHHHHHCH-HTT-EEEET-T-TTSHHHHHHH--HTT-SEEEEEES-
T ss_pred CCCcCCCcHHHHHHHHHHhcccccCCCeEEEc-CCccCccHHHHH--hcCCCeEEEEECC
Confidence 568999999999999999995 59999998 444556665444 4566555555443
No 80
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=35.31 E-value=93 Score=30.06 Aligned_cols=90 Identities=23% Similarity=0.214 Sum_probs=49.3
Q ss_pred hccccceeeeeccCCCCC----CCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHH
Q 026863 74 LQNGSDVRGVALEGEKGR----TVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGL 149 (232)
Q Consensus 74 lFg~sGIRGi~~~g~~~~----~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL 149 (232)
-|.++||||+--.-|-+. -.|++|+.+..+-.-+-.- . + ....++-.|. ..-|
T Consensus 59 alsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~-----~----~~~~v~n~DA-----------N~lm 115 (380)
T COG1867 59 ALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---S-----G----EDAEVINKDA-----------NALL 115 (380)
T ss_pred cccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---C-----c----ccceeecchH-----------HHHH
Confidence 367999999832211111 1279999888755544221 1 1 1223333552 1122
Q ss_pred HH--CCCeEEEecc--CChhHHHHhhhcCCCCCCceEEEccCC
Q 026863 150 AR--AGCLVFDMGL--ATTPACFMSTLLPPFAYDASIMVGYMY 188 (232)
Q Consensus 150 ~a--~Gv~VidlG~--~pTP~l~yav~~~~~~a~gGImITASH 188 (232)
.. ..++|+|+.+ .|.|.+--|+. .-+-.|=+-|||-.
T Consensus 116 ~~~~~~fd~IDiDPFGSPaPFlDaA~~--s~~~~G~l~vTATD 156 (380)
T COG1867 116 HELHRAFDVIDIDPFGSPAPFLDAALR--SVRRGGLLCVTATD 156 (380)
T ss_pred HhcCCCccEEecCCCCCCchHHHHHHH--HhhcCCEEEEEecc
Confidence 22 5899999976 67777765553 22323446788854
No 81
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=32.57 E-value=2.9e+02 Score=24.98 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEe-ccCChhH
Q 026863 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTPA 166 (232)
Q Consensus 94 ~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~Vidl-G~~pTP~ 166 (232)
-=||..++.+++.++....+. |. ..-.|.|-. + +. .+.++.+|.+.|+.|..+ ...|.|-
T Consensus 159 KsTpfAAQ~aae~aakka~~~-----GI--k~V~V~vKG---p-Gg--REtALRaL~~~GLkIt~I~DvTpiPH 219 (233)
T PTZ00090 159 QQSERCAYRIGENIAKKCRRL-----GI--FAVDIKFRR---I-MR--VETVLQAFYANGLQVTQIIHEPRLPK 219 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHHc-----CC--eEEEEEEeC---C-Ch--HHHHHHHHHHCCCEEEEEEECCCCCc
Confidence 568999999999999887764 31 122343322 2 22 888999999999999987 6777774
No 82
>PF13362 Toprim_3: Toprim domain
Probab=32.27 E-value=1.4e+02 Score=22.03 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=32.2
Q ss_pred CeEEEEecCCCC--hHHHHHHHHHHHHHCCCeEEEecc
Q 026863 126 VKVSLGKDPRVS--GPSLSVAVFAGLARAGCLVFDMGL 161 (232)
Q Consensus 126 ~~VvVGrD~R~S--S~~La~Ala~gL~a~Gv~VidlG~ 161 (232)
..|+|.-|.-.. ++..+..+++.|.+.|+.+..+-+
T Consensus 42 ~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 42 RRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 679999999999 999999999999999999886633
No 83
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=32.01 E-value=1.8e+02 Score=23.76 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeE
Q 026863 96 TPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLV 156 (232)
Q Consensus 96 Tp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~V 156 (232)
|-+.+..+|..+|+-..+. | -..||+++-.-.-+-+.+ |++++...+|+++
T Consensus 75 N~~aA~~vG~lia~ra~~k-----g----i~~vVfdr~g~~yhgRV~-Ala~~AreaGL~f 125 (125)
T COG0256 75 NTEAAYLVGKLIAERALAK-----G----IEEVVFDRGGYKYHGRVA-ALADGAREAGLEF 125 (125)
T ss_pred CHHHHHHHHHHHHHHHHHc-----C----CcEEEEcCCCCCcchHHH-HHHHHHHHcCcCC
Confidence 4688999999999887765 3 357888887776655554 5689999999863
No 84
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=31.29 E-value=3.3e+02 Score=26.63 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=29.7
Q ss_pred CeEEEEecCCC-ChHHHHHHHHHHHHHC--CCeEEEeccC
Q 026863 126 VKVSLGKDPRV-SGPSLSVAVFAGLARA--GCLVFDMGLA 162 (232)
Q Consensus 126 ~~VvVGrD~R~-SS~~La~Ala~gL~a~--Gv~VidlG~~ 162 (232)
.+|+|-+++.. +.++++++++++|.+. |++|....+.
T Consensus 252 ~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~ 291 (479)
T PRK05452 252 DRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVA 291 (479)
T ss_pred CcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECC
Confidence 67999999995 5999999999999976 6766544443
No 85
>PRK09271 flavodoxin; Provisional
Probab=31.27 E-value=2.5e+02 Score=22.81 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=25.1
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHHCCCeEE
Q 026863 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVF 157 (232)
Q Consensus 127 ~VvVGrD~R~-SS~~La~Ala~gL~a~Gv~Vi 157 (232)
+|+|-+.+.. +.+.++++++++|.+.|++|.
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~ 33 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEVD 33 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeE
Confidence 4777777774 678999999999999998774
No 86
>PF04069 OpuAC: Substrate binding domain of ABC-type glycine betaine transport system; InterPro: IPR007210 This domain is a part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. It is often found in integral membrane proteins or proteins predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis []. OpuBC is closely related and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine []. L-carnitine is important for osmoregulation in Listeria monocytogenes. This domain is found also in proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).; GO: 0005215 transporter activity, 0005488 binding, 0006810 transport; PDB: 3R6U_A 3TMG_C 3MAM_A 1SW5_C 1SW4_B 1SW1_A 1SW2_A 3O66_A 1R9Q_A 1R9L_A ....
Probab=30.16 E-value=1.6e+02 Score=25.56 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=37.8
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhhh
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTL 172 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav~ 172 (232)
+|+||.-.-..+..++..+...|...|+.|...+.-.++.++-++.
T Consensus 2 ~I~ig~~~w~~~~~~a~i~~~~Le~~G~~v~~~~~~~~~~~~~al~ 47 (257)
T PF04069_consen 2 PIVIGSKNWTESQILAEIYAQLLEAAGYVVEVVNLGSTPVIFAALA 47 (257)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTEEEEEEEESSHHHHHHHHH
T ss_pred eEEEecCCCcHHHHHHHHHHHHHHHCCCeEEEecCCchHHHHHHHH
Confidence 5888888888899999999999999999777777777777766664
No 87
>PRK05568 flavodoxin; Provisional
Probab=29.49 E-value=1.4e+02 Score=23.23 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=26.0
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHHCCCeEEEecc
Q 026863 127 KVSLGKDPR-VSGPSLSVAVFAGLARAGCLVFDMGL 161 (232)
Q Consensus 127 ~VvVGrD~R-~SS~~La~Ala~gL~a~Gv~VidlG~ 161 (232)
+|+|-|++. -+.+.+++++++++...|++|....+
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~ 38 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNV 38 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 477777776 46888899999999888877654433
No 88
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=29.44 E-value=2.8e+02 Score=23.95 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCeEEEEecC-CCChHHHHHHHHHHHHHCCCeEEEeccC
Q 026863 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDP-RVSGPSLSVAVFAGLARAGCLVFDMGLA 162 (232)
Q Consensus 102 ~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~-R~SS~~La~Ala~gL~a~Gv~VidlG~~ 162 (232)
.++.++.+...... +....+..|+|-.|. +..........++.|...|..|+.+.+.
T Consensus 131 di~~aL~~~~~~~~----~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 131 DIGQALREFLRQYA----RPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred HHHHHHHHHHHHhh----cccccCcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 45566666554431 000124679999999 6777777777789999999999998654
No 89
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.69 E-value=3.3e+02 Score=22.57 Aligned_cols=57 Identities=11% Similarity=0.124 Sum_probs=37.8
Q ss_pred eEEEE-ecCCCChHHHHHHHHHHHHHCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEcc
Q 026863 127 KVSLG-KDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMVGY 186 (232)
Q Consensus 127 ~VvVG-rD~R~SS~~La~Ala~gL~a~Gv~VidlG~-~pTP~l~yav~~~~~~a~gGImITA 186 (232)
..++| +|.-.......+ +++.+.+.+-+++.+|+ +|.-... +... ......+|+++-
T Consensus 73 l~i~g~~~g~~~~~~~~~-i~~~I~~~~pdiv~vglG~PkQE~~-~~~~-~~~l~~~v~~~v 131 (171)
T cd06533 73 LKIVGYHHGYFGPEEEEE-IIERINASGADILFVGLGAPKQELW-IARH-KDRLPVPVAIGV 131 (171)
T ss_pred cEEEEecCCCCChhhHHH-HHHHHHHcCCCEEEEECCCCHHHHH-HHHH-HHHCCCCEEEEe
Confidence 45677 787766555444 89999999999999997 6666654 4332 122345666664
No 90
>PRK04017 hypothetical protein; Provisional
Probab=28.62 E-value=1.1e+02 Score=25.24 Aligned_cols=32 Identities=22% Similarity=0.060 Sum_probs=30.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCeEE
Q 026863 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (232)
Q Consensus 126 ~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~Vi 157 (232)
..|+|--|.-..|..+.+-+..-|...|+.|-
T Consensus 66 r~VIILTD~D~~GekIr~~l~~~l~~~G~~vd 97 (132)
T PRK04017 66 KEVIILTDFDRKGEELAKKLSEYLQGYGIKVD 97 (132)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhCCCCcc
Confidence 56999999999999999999999999999885
No 91
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=28.53 E-value=4e+02 Score=24.44 Aligned_cols=78 Identities=19% Similarity=0.159 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEE-eccCChh--HHHHhhhcCCCCCC
Q 026863 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD-MGLATTP--ACFMSTLLPPFAYD 179 (232)
Q Consensus 103 lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~Vid-lG~~pTP--~l~yav~~~~~~a~ 179 (232)
.+.+++.++.... + +++|+|=+|.-..++.+.+++-+.|.+.|.++.. -...|.. .-.+....+..+.+
T Consensus 134 q~~~~~~~l~~~~----~----~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~v~~i~~~~~d 205 (366)
T COG0683 134 QAAAAADYLVKKG----G----KKRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYAPGDTDFSALVAKIKAAGPD 205 (366)
T ss_pred HHHHHHHHHHHhc----C----CcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEEEeeCCCCCChHHHHHHHHhcCCC
Confidence 5667888887653 2 2479999999999999999999999999997443 3333322 22222222234444
Q ss_pred ceEEEccCCC
Q 026863 180 ASIMVGYMYK 189 (232)
Q Consensus 180 gGImITASHN 189 (232)
.|+++..+.
T Consensus 206 -~v~~~~~~~ 214 (366)
T COG0683 206 -AVLVGGYGP 214 (366)
T ss_pred -EEEECCCCc
Confidence 577777665
No 92
>PRK06756 flavodoxin; Provisional
Probab=27.91 E-value=2.6e+02 Score=22.14 Aligned_cols=35 Identities=3% Similarity=-0.080 Sum_probs=25.9
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHHCCCeEEEecc
Q 026863 127 KVSLGKDPR-VSGPSLSVAVFAGLARAGCLVFDMGL 161 (232)
Q Consensus 127 ~VvVGrD~R-~SS~~La~Ala~gL~a~Gv~VidlG~ 161 (232)
+|+|-++++ -+.+.++++++++|...|++|....+
T Consensus 3 kv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 3 KLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 477777766 46788889999999888887654443
No 93
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=26.98 E-value=68 Score=23.38 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=33.7
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccCChhHH
Q 026863 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPAC 167 (232)
Q Consensus 126 ~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l 167 (232)
.+|+|+-|....+..+.+.++.-....|.+|..+.+.+.+..
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~ 44 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQ 44 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHC
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccc
Confidence 479999999999998888888877778999887765554443
No 94
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=26.43 E-value=3.6e+02 Score=24.58 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=43.1
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEccCCC
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMVGYMYK 189 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~-~pTP~l~yav~~~~~~a~gGImITASHN 189 (232)
.|+--+|.-.+-..- +++++-+.+.|-+++..|+ +|--....+-. ......+|+|+-.-.
T Consensus 136 ~ivg~h~GYf~~~e~-~~i~~~I~~s~pdil~VgmG~P~QE~wi~~~--~~~~~~~v~igVGg~ 196 (253)
T COG1922 136 KIVGSHDGYFDPEEE-EAIVERIAASGPDILLVGMGVPRQEIWIARN--RQQLPVAVAIGVGGS 196 (253)
T ss_pred eEEEecCCCCChhhH-HHHHHHHHhcCCCEEEEeCCCchhHHHHHHh--HHhcCCceEEeccce
Confidence 455555666666666 8999999999999999996 66666654432 234667888887655
No 95
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=26.25 E-value=1.8e+02 Score=22.06 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=28.4
Q ss_pred EEecCCCChHHHHHHHHHHHHHCCCeEEEeccCChh-HHHHhhhcCCCCCCceEEEccC
Q 026863 130 LGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTP-ACFMSTLLPPFAYDASIMVGYM 187 (232)
Q Consensus 130 VGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP-~l~yav~~~~~~a~gGImITAS 187 (232)
++.|.+.-+.. .++..|...|++|+++|.-.+| .+.-++. +.+.+ -|.|+.+
T Consensus 7 ~~~e~H~lG~~---~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~--~~~pd-vV~iS~~ 59 (119)
T cd02067 7 VGGDGHDIGKN---IVARALRDAGFEVIDLGVDVPPEEIVEAAK--EEDAD-AIGLSGL 59 (119)
T ss_pred eCCchhhHHHH---HHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEecc
Confidence 33455554443 4566777889999888754333 3322332 33443 4666665
No 96
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=26.05 E-value=95 Score=23.97 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=29.9
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccCCh
Q 026863 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT 164 (232)
Q Consensus 127 ~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pT 164 (232)
+|+|+.|....|....+-.+.-....|..+..+-..+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~ 38 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPP 38 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccC
Confidence 48999999998888888877776767888887765544
No 97
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=25.13 E-value=3.7e+02 Score=23.37 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccC
Q 026863 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA 162 (232)
Q Consensus 102 ~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~ 162 (232)
..+.+++.++.+.. + .++|.|-++....+..+++++.+.+.+.|++|......
T Consensus 120 ~~~~~~~~~~~~~~----~----~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~ 172 (334)
T cd06342 120 QQGPAAAKYAVETL----K----AKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGT 172 (334)
T ss_pred HHHHHHHHHHHHhc----C----CCEEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecC
Confidence 45667777765432 1 24566656667889999999999999999999866433
No 98
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=25.02 E-value=2.5e+02 Score=24.56 Aligned_cols=54 Identities=31% Similarity=0.379 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeEE
Q 026863 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (232)
Q Consensus 95 LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~Vi 157 (232)
+.|.. ...+.++++|+.+.. + ..+|.|-+.....+..+..++.+.+.+.|.+|+
T Consensus 114 ~~~~~-~~~~~~~~~~~~~~~----g----~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv 167 (343)
T PF13458_consen 114 LSPSD-SQQAAALAEYLAKKL----G----AKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVV 167 (343)
T ss_dssp SS--H-HHHHHHHHHHHHHTT----T----TSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred Eeccc-cHHHHHHHHHHHHHc----C----CcEEEEEecCchhhhHHHHHHHHHHhhcCceec
Confidence 44444 345777888876532 2 245555555588999999999999999999986
No 99
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=24.99 E-value=4.6e+02 Score=22.82 Aligned_cols=92 Identities=14% Similarity=-0.078 Sum_probs=60.3
Q ss_pred eEEEEec-------CCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhhh----cCCCCCCceEEEccCCCCCCCCC
Q 026863 127 KVSLGKD-------PRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTL----LPPFAYDASIMVGYMYKVNNFNR 195 (232)
Q Consensus 127 ~VvVGrD-------~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav~----~~~~~a~gGImITASHN~~P~~~ 195 (232)
-+||+.. .|..+..=+++++..|.+.|++|...--...-.+.-++. ..+.++++.+++-+||- -.
T Consensus 12 aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG--~~-- 87 (243)
T cd00032 12 ALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHG--EE-- 87 (243)
T ss_pred EEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCC--CC--
Confidence 4677764 466677778999999999999999765455444432221 12346788899999996 32
Q ss_pred CcEEEeccc--hHHHHHHHHhhcCCCccc
Q 026863 196 IAIEFAFWI--SLYEIRYCCVTDDCFSLT 222 (232)
Q Consensus 196 NGiK~~~~~--~~~eIe~~~~~e~~~~~~ 222 (232)
|.+.-.+.. ..++|...+....|.+|-
T Consensus 88 ~~l~~~D~~~v~l~~i~~~f~~~~~~sl~ 116 (243)
T cd00032 88 GGIYGTDGDVVPIDEITSLFNGDNCPSLA 116 (243)
T ss_pred CEEEEecCcEEEHHHHHHhhccCCCcccc
Confidence 444433211 356788888777777653
No 100
>PRK10646 ADP-binding protein; Provisional
Probab=24.72 E-value=1.5e+02 Score=24.79 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEeccCChhHH
Q 026863 96 TPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPAC 167 (232)
Q Consensus 96 Tp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l 167 (232)
+++...++|+.+|..+..+ ..|++--|--.-=--|.++++++| |++ +.++.|.+
T Consensus 10 s~~~t~~l~~~la~~l~~g-----------~vi~L~GdLGaGKTtf~rgl~~~L---g~~----~~V~SPTF 63 (153)
T PRK10646 10 DEQATLDLGARVAKACDGA-----------TVIYLYGDLGAGKTTFSRGFLQAL---GHQ----GNVKSPTY 63 (153)
T ss_pred CHHHHHHHHHHHHHhCCCC-----------cEEEEECCCCCCHHHHHHHHHHHc---CCC----CCCCCCCE
Confidence 6788899999999887542 346666676666667888888877 553 35677766
No 101
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=24.47 E-value=3.1e+02 Score=20.70 Aligned_cols=53 Identities=9% Similarity=0.005 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec-CCCChHHHHHHHHHHHHHCCC
Q 026863 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD-PRVSGPSLSVAVFAGLARAGC 154 (232)
Q Consensus 93 ~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD-~R~SS~~La~Ala~gL~a~Gv 154 (232)
.++|++.+.+++.++++.+.... ...|.|.-+ .........++++.|+....+
T Consensus 64 ~~~~~~~~r~a~~~~~~~l~~~~---------~~~v~i~l~~~~~~~~~~~~~~~~g~~l~~Y 117 (126)
T PF02789_consen 64 EKLTAESLRKAGAAAARALKKLK---------VKSVAIDLPIDGENSDEAAEAAAEGALLGSY 117 (126)
T ss_dssp TGBCHHHHHHHHHHHHHHHHHTT----------SEEEEEGCSSBTTCHHHHHHHHHHHHHHT-
T ss_pred CcCCHHHHHHHHHHHHHHHhhCC---------ceEEEEeCcccccCcHHHHHHHHHHHHHcCc
Confidence 36999999999999999988742 256777776 333444888888888765443
No 102
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=24.14 E-value=3.2e+02 Score=26.62 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=47.9
Q ss_pred HHHHHHHHHHCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCC-----CCCCCcEEEeccchHHHHHHHHhh-
Q 026863 142 SVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVN-----NFNRIAIEFAFWISLYEIRYCCVT- 215 (232)
Q Consensus 142 a~Ala~gL~a~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~-----P~~~NGiK~~~~~~~~eIe~~~~~- 215 (232)
..+....|.++|++|+... |-+.++ |-.=.|+-+.+.+|-|-+ --...++-++.++..+++++.+..
T Consensus 378 ~~~~~~~L~~~Gv~I~~y~----~~~~Ha---K~~ivD~~~~~vGS~N~d~rS~~~N~E~~~~i~d~~~~~~l~~~f~~d 450 (483)
T PRK01642 378 SRAFFTELLEAGVKIYRYE----GGLLHT---KSVLVDDELALVGTVNLDMRSFWLNFEITLVIDDTGFAADLAAMQEDY 450 (483)
T ss_pred HHHHHHHHHHcCCEEEEeC----CCceEe---EEEEECCCEEEeeCCcCCHhHHhhhhcceEEEECHHHHHHHHHHHHHH
Confidence 4445566777777777552 111111 001135667777777733 234567777777788999998887
Q ss_pred -cCCCccccccccc
Q 026863 216 -DDCFSLTLHSKWS 228 (232)
Q Consensus 216 -e~~~~~~~~~~~~ 228 (232)
.+|.+++++ +|.
T Consensus 451 ~~~s~~i~~~-~~~ 463 (483)
T PRK01642 451 FARSRELDLE-EWR 463 (483)
T ss_pred HHhCeEcCHH-HHh
Confidence 468888875 353
No 103
>PRK05569 flavodoxin; Provisional
Probab=24.14 E-value=1.9e+02 Score=22.50 Aligned_cols=34 Identities=24% Similarity=0.017 Sum_probs=25.3
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHHCCCeEEEec
Q 026863 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMG 160 (232)
Q Consensus 127 ~VvVGrD~R~-SS~~La~Ala~gL~a~Gv~VidlG 160 (232)
+|+|-+.+.. +.+.+++++++++.+.|++|-...
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~ 37 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKH 37 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4677777664 678999999999988887664333
No 104
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=24.11 E-value=1.4e+02 Score=26.99 Aligned_cols=51 Identities=20% Similarity=0.062 Sum_probs=33.9
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc-CChhHHHHhhhcCCCCC
Q 026863 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAY 178 (232)
Q Consensus 126 ~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~-~pTP~l~yav~~~~~~a 178 (232)
.+|++|-=.--.-.-=++.+..-|.++|++|+|+|. +|--.+-=.+. ..++
T Consensus 105 g~vVigtveGDvHdIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a~--e~k~ 156 (227)
T COG5012 105 GKVVIGTVEGDVHDIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAK--ELKP 156 (227)
T ss_pred ceEEEEeecccHHHHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHH--HcCC
Confidence 678888655544444456677788899999999994 55555543442 4553
No 105
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.87 E-value=4.3e+02 Score=26.77 Aligned_cols=88 Identities=14% Similarity=0.047 Sum_probs=62.4
Q ss_pred hhhhccccceeeeeccC------------------CCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEe
Q 026863 71 IRRLQNGSDVRGVALEG------------------EKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGK 132 (232)
Q Consensus 71 ~~~lFg~sGIRGi~~~g------------------~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGr 132 (232)
-.++.|+.+.||+.+.. -++.+.+|+.-.+.++-+.+-++..+ ++.||--
T Consensus 159 ~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~------------grtVi~t 226 (613)
T KOG0061|consen 159 ADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS------------GRTVICT 226 (613)
T ss_pred ccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC------------CCEEEEE
Confidence 34467777778886621 11124468888888887777665442 4688888
Q ss_pred cCCCChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhh
Q 026863 133 DPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST 171 (232)
Q Consensus 133 D~R~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav 171 (232)
...++++.+..-=--.|.+.| ++++.|....-.-+|+.
T Consensus 227 IHQPss~lf~lFD~l~lLs~G-~~vy~G~~~~~~~ff~~ 264 (613)
T KOG0061|consen 227 IHQPSSELFELFDKLLLLSEG-EVVYSGSPRELLEFFSS 264 (613)
T ss_pred EeCCcHHHHHHHhHhhhhcCC-cEEEecCHHHHHHHHHh
Confidence 899999988766556778889 99999988777777764
No 106
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=23.54 E-value=3.5e+02 Score=25.93 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=48.7
Q ss_pred ccchhhHHhhhhcccccee-eeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHH
Q 026863 63 VVDEEMDRIRRLQNGSDVR-GVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSL 141 (232)
Q Consensus 63 ~~~~~m~~~~~lFg~sGIR-Gi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~L 141 (232)
+.+-.||.+.-.. .|+. .+..-| ..||++.+..|- .. . ..|++..|.-..|...
T Consensus 262 ivEG~~Daisl~~--~G~~~aVA~~G-----talt~~~~~~l~--------r~-----~-----~~vvl~~D~D~aG~~a 316 (415)
T TIGR01391 262 LVEGYMDVIALHQ--AGIKNAVASLG-----TALTEEHIKLLK--------RY-----A-----DEIILCFDGDKAGRKA 316 (415)
T ss_pred EEecHHHHHHHHH--CCCCcEEECCC-----CCCcHHHHHHHH--------hh-----C-----CeEEEEeCCCHHHHHH
Confidence 3555566654322 4565 333222 368887766542 11 1 4799999999999999
Q ss_pred HHHHHHHHHHCCCeEEEe
Q 026863 142 SVAVFAGLARAGCLVFDM 159 (232)
Q Consensus 142 a~Ala~gL~a~Gv~Vidl 159 (232)
+.-++..|...|++|..+
T Consensus 317 a~r~~~~l~~~g~~v~v~ 334 (415)
T TIGR01391 317 ALRAIELLLPLGINVKVI 334 (415)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 999999999999887654
No 107
>KOG2451 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=23.43 E-value=53 Score=32.18 Aligned_cols=60 Identities=18% Similarity=0.134 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHHCCCeEEEe--ccCChhHHHHhhhcCCCCCCceE--EEccCCCCCCCCCCcE
Q 026863 136 VSGPSLSVAVFAGLARAGCLVFDM--GLATTPACFMSTLLPPFAYDASI--MVGYMYKVNNFNRIAI 198 (232)
Q Consensus 136 ~SS~~La~Ala~gL~a~Gv~Vidl--G~~pTP~l~yav~~~~~~a~gGI--mITASHN~~P~~~NGi 198 (232)
.-+.|+.+-+.+.| ++||.|+.- +.+|--++..+-+..+-+...|+ +||++|| .+...|-
T Consensus 171 FP~AMItRK~gAAL-AaGCTvVvkPs~~TPlsaLala~lA~~AGiP~Gv~NVit~~~~--~a~eig~ 234 (503)
T KOG2451|consen 171 FPAAMITRKAGAAL-AAGCTVVVKPSEDTPLSALALAKLAEEAGIPAGVLNVITADAS--NAAEIGK 234 (503)
T ss_pred ChHHHHHhHHHHHH-hcCceEEEccCCCCchHHHHHHHHHHHcCCCCcceEEEecCCC--ChHHHHH
Confidence 56788888855554 789999976 45565566555433233444453 6888877 4433443
No 108
>PRK09004 FMN-binding protein MioC; Provisional
Probab=23.16 E-value=2.3e+02 Score=22.91 Aligned_cols=48 Identities=13% Similarity=-0.045 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHHHCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCC
Q 026863 136 VSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVN 191 (232)
Q Consensus 136 ~SS~~La~Ala~gL~a~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~ 191 (232)
-+++.+++.+++.|.+.|++|..+.... | .-. .+.+.=|++|+++..+
T Consensus 13 Gnae~~A~~l~~~~~~~g~~~~~~~~~~-~----~~l---~~~~~li~~~sT~G~G 60 (146)
T PRK09004 13 GGAEYVADHLAEKLEEAGFSTETLHGPL-L----DDL---SASGLWLIVTSTHGAG 60 (146)
T ss_pred hHHHHHHHHHHHHHHHcCCceEEeccCC-H----HHh---ccCCeEEEEECCCCCC
Confidence 4789999999999999999887554332 1 111 2346678888887433
No 109
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.98 E-value=2.7e+02 Score=24.92 Aligned_cols=50 Identities=22% Similarity=0.022 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEec
Q 026863 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG 160 (232)
Q Consensus 103 lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG 160 (232)
.+.+++.++.+.. +..+|.+-++.-..+..+...+.+.|.+.|++|....
T Consensus 124 ~~~~~a~~~~~~~--------~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~ 173 (347)
T cd06335 124 QAPFLVDEAVKRG--------GFKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVE 173 (347)
T ss_pred HHHHHHHHHHHhc--------CCCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEe
Confidence 4566777765432 1256777777777888899999999999998887543
No 110
>CHL00041 rps11 ribosomal protein S11
Probab=22.54 E-value=4e+02 Score=21.15 Aligned_cols=60 Identities=25% Similarity=0.316 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEe-ccCChh
Q 026863 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (232)
Q Consensus 94 ~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~Vidl-G~~pTP 165 (232)
.-||..+..+++.+++.+.+. |. ..-.|.| +-. | .-.++++.+|...|+.+..+ ..+|.|
T Consensus 52 K~T~~Aa~~~a~~~~~~~~~~-----gi--~~v~I~i-kG~---G-~Gr~~~ir~l~~~glkI~~I~D~Tpip 112 (116)
T CHL00041 52 KGTPFAAQTAAENAIRTVIDQ-----GM--KRAEVMI-KGP---G-LGRDTALRAIRRSGLKLSSIRDVTPMP 112 (116)
T ss_pred cCCHHHHHHHHHHHHHHHHHc-----CC--cEEEEEE-ECC---C-CcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 578999999999999988765 31 1223444 211 2 23366789999999999977 466655
No 111
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=22.53 E-value=2.3e+02 Score=19.70 Aligned_cols=34 Identities=21% Similarity=0.052 Sum_probs=29.7
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEe
Q 026863 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (232)
Q Consensus 126 ~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~Vidl 159 (232)
.+|+|..|.-..|...+..+.+.+.+.|+.+...
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~i~ 77 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGRVRVP 77 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 5799999999999999999999999988877643
No 112
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=22.22 E-value=1.3e+02 Score=20.80 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCC
Q 026863 126 VKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (232)
Q Consensus 126 ~~VvVGrD~R~SS~~La~Ala~gL~a~G 153 (232)
..|+|+.|.-..|+.++..+...|...|
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~~~ 75 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKPAG 75 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhhhc
Confidence 4699999999999999999998887765
No 113
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=21.34 E-value=2.2e+02 Score=24.56 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=27.4
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEe
Q 026863 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (232)
Q Consensus 126 ~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~Vidl 159 (232)
+.|++-||.+.........++..|.+.|+++.-+
T Consensus 187 g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~fvtl 220 (224)
T TIGR02884 187 GAILLLHAVSKDNAEALDKIIKDLKEQGYTFKSL 220 (224)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEh
Confidence 5799999987655556667799999999998755
No 114
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=21.27 E-value=4.4e+02 Score=21.70 Aligned_cols=66 Identities=23% Similarity=0.199 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC---CCChHHHHHHHHHHHHHCCCeEEEe-ccCChh
Q 026863 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP---RVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (232)
Q Consensus 93 ~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~---R~SS~~La~Ala~gL~a~Gv~Vidl-G~~pTP 165 (232)
..-||..++..++.+++...+. |. ..-.|.|--.. ..+--.=.+.++.+|...|+.|..+ ..+|.|
T Consensus 48 kK~TpyAAq~aae~~~~~~~~~-----Gi--~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiP 117 (132)
T PRK09607 48 DESSPYAAMQAAEKAAEDAKEK-----GI--TGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIP 117 (132)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--cEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 3678999999999999888764 31 22334443321 1111122456689999999999988 577777
No 115
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.19 E-value=5.1e+02 Score=21.90 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCeEEEecc-CChhHHH
Q 026863 96 TPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACF 168 (232)
Q Consensus 96 Tp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a~Gv~VidlG~-~pTP~l~ 168 (232)
+|+.+.++++.+-+ .+. ...++|++.-. ++.-.+++++-+.++|-+++.+|+ +|--...
T Consensus 57 ~~~v~~~~~~~l~~----~yP---------~l~i~g~~g~f-~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 57 KPDVLQQLKVKLIK----EYP---------KLKIVGAFGPL-EPEERKAALAKIARSGAGIVFVGLGCPKQEIW 116 (177)
T ss_pred CHHHHHHHHHHHHH----HCC---------CCEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHH
Confidence 46666665555443 321 23467886555 455667889999999999999997 6766654
No 116
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=20.97 E-value=5.6e+02 Score=22.96 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=53.5
Q ss_pred chhhHHhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHH
Q 026863 65 DEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVA 144 (232)
Q Consensus 65 ~~~m~~~~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~A 144 (232)
.+.+.++-+..-..|+.|++-.|..|+...||.+--.++.+...+.... +..|++|-- . + -.-+..
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~-----------~~pvi~gv~-~-~-t~~~i~ 85 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG-----------RVPVLAGAG-Y-G-TATAIA 85 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCCEEEecC-C-C-HHHHHH
Confidence 3333433333445789999877777777789999888877766665421 245777764 2 2 333445
Q ss_pred HHHHHHHCCCeEEEe
Q 026863 145 VFAGLARAGCLVFDM 159 (232)
Q Consensus 145 la~gL~a~Gv~Vidl 159 (232)
+++-..+.|++.+.+
T Consensus 86 ~a~~a~~~Gad~v~~ 100 (289)
T cd00951 86 YAQAAEKAGADGILL 100 (289)
T ss_pred HHHHHHHhCCCEEEE
Confidence 678889999999865
No 117
>PRK11263 cardiolipin synthase 2; Provisional
Probab=20.45 E-value=5.9e+02 Score=24.44 Aligned_cols=47 Identities=9% Similarity=-0.132 Sum_probs=33.0
Q ss_pred CceEEEccCCCCC-----CCCCCcEEEeccchHHHHHHHHhh---cCCCcccccc
Q 026863 179 DASIMVGYMYKVN-----NFNRIAIEFAFWISLYEIRYCCVT---DDCFSLTLHS 225 (232)
Q Consensus 179 ~gGImITASHN~~-----P~~~NGiK~~~~~~~~eIe~~~~~---e~~~~~~~~~ 225 (232)
|+-+.+.+|-|-+ --..+++-+.+++..+++++.++. ++|..++++.
T Consensus 296 D~~~~~vGS~Nld~rS~~lN~E~~~~i~d~~~a~~l~~~~~~~~~~~s~~v~~~~ 350 (411)
T PRK11263 296 DDHWATVGSSNLDPLSLSLNLEANLIIRDRAFNQTLRDNLNGLIAADCQQVDETM 350 (411)
T ss_pred CCCEEEEeCCcCCHHHhhhhhhcCEEEeCHHHHHHHHHHHHHHHHhhCEeCcHHH
Confidence 5556677777644 333566777777888999888875 4689998764
Done!