RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 026866
(231 letters)
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 206 bits (527), Expect = 4e-67
Identities = 67/115 (58%), Positives = 90/115 (78%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE MR +GR+ A+VL+ +KPG+TT E+D+ H+ I ++GAYP+PLGY GFPKS+CT
Sbjct: 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICT 60
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
SVNE +CHGIPD R L+DGD +NIDV V L+GYHGD++ TF G+V +EA+ LV+
Sbjct: 61 SVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVE 115
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 197 bits (504), Expect = 1e-63
Identities = 66/121 (54%), Positives = 87/121 (71%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ + IE MRV+GRLAA+VL+ VKPG+TT E+D+ + I D GA P+PLGY GF
Sbjct: 5 IKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGF 64
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
PKS+CTSVNE +CHGIP + L++GD +NIDVTV +GYHGDTS TF G++ E + L
Sbjct: 65 PKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLC 124
Query: 230 K 230
+
Sbjct: 125 E 125
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 194 bits (495), Expect = 2e-60
Identities = 88/166 (53%), Positives = 109/166 (65%), Gaps = 15/166 (9%)
Query: 75 LRPGKVSPHRPVPDHIPRP-------PYV--NS-QKPIGIVSGPEVHDEKGIECMRVSGR 124
LRP +SP R VPDHIP+P P + NS + + PE I+ MR + R
Sbjct: 97 LRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPE-----QIQRMRETCR 151
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHG 184
+A +VL+ A +KPG+TTDEID+ VH+ I G YPSPL Y FPKS CTSVNE ICHG
Sbjct: 152 IAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHG 211
Query: 185 IPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
IPD+R LEDGD +N+DVTVY G HGD + TFF G+VD+ +R LVK
Sbjct: 212 IPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVK 257
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 185 bits (471), Expect = 2e-58
Identities = 60/125 (48%), Positives = 81/125 (64%)
Query: 106 SGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLG 165
G E+ + +E MR GR+ A L+ G V+PG+TT E+D+ + + ++GA PSP G
Sbjct: 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEG 65
Query: 166 YGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEA 225
Y GFP S C SVNE + HGIP R ++DGD +NIDV+ YL+GYHGDT TF G V +EA
Sbjct: 66 YYGFPGSTCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEA 125
Query: 226 RNLVK 230
L +
Sbjct: 126 EKLCR 130
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 170 bits (433), Expect = 1e-52
Identities = 57/124 (45%), Positives = 84/124 (67%), Gaps = 2/124 (1%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ + IE MR +G++AA+ L+ +LVKPG+TT E+D+ + I + GAYP+ LGY G
Sbjct: 4 SIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKG 63
Query: 169 FPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE-AR 226
FP C SVNE + HGIP D + L++GD + IDV +++GY GDT+ TF G+V DE A+
Sbjct: 64 FPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAK 123
Query: 227 NLVK 230
L++
Sbjct: 124 RLLE 127
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 160 bits (406), Expect = 8e-49
Identities = 61/114 (53%), Positives = 78/114 (68%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE +R +GRLAA+VLE VKPG++T E+D+ I +GA P+ LGY GFP SVC
Sbjct: 9 IEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCI 68
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
SVNE + HGIPD + L+DGD +NIDV V +GYHGDT+ TF G + EA L+
Sbjct: 69 SVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLL 122
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 119 bits (300), Expect = 2e-33
Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQ-MIIDNGAYPSPLGYGGFPKSVCT 175
E MR + R+AA LE A ++PG+T E+ + + GA FP V +
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGA-----RGPAFPPIVAS 55
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
N + H IP R L+DGD + IDV +GYH D + TF G E R L +
Sbjct: 56 GPNAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYE 110
Score = 34.2 bits (79), Expect = 0.036
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 124 RLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG---AYPSPLGYGGFPKSVCTSVNEC 180
+ E A VKPG+T ++D A +++ + G +P LG+G + V++
Sbjct: 110 EAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEGGYGEYFPHGLGHG-----IGLDVHDE 164
Query: 181 --ICHGIPDSRALEDGDTINIDVTVY 204
+ R LE G I+ +Y
Sbjct: 165 GPYISRGGNDRVLEPGMVFTIEPGIY 190
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 116 bits (292), Expect = 2e-31
Identities = 45/123 (36%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG- 168
+ + IE +R + ++ A++L+ K G+TT+E+D+ ++ + A P+PL YG
Sbjct: 43 IKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSP 102
Query: 169 -FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
FPK++CTS+NE ICHGIP+ L++GD +NIDV+ ++GY+GD S G+V + +
Sbjct: 103 PFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKK 162
Query: 228 LVK 230
+ +
Sbjct: 163 VCQ 165
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 96.6 bits (240), Expect = 2e-24
Identities = 45/114 (39%), Positives = 64/114 (56%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I+ M SG+L A ++KPGITT EI+ V + +GA GY G+P ++C
Sbjct: 10 IDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICA 69
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
SVN+ +CH P L +GD + ID+ V LNG D++ T+ G V DEA L+
Sbjct: 70 SVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLL 123
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 95.2 bits (237), Expect = 3e-24
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I +R + +A + A ++PG+T E+ A+ Q + G YP+
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYPAG--------PTIV 52
Query: 176 SVNE--CICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
+ H PD R L++GD + +D+ +GYH D + TF G+ DE R L +
Sbjct: 53 GSGARTALPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYE 109
Score = 40.9 bits (96), Expect = 2e-04
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 124 RLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSP---LGYGGFPKSVCTSVNEC 180
+ E A ++PG+T +E+D A +++ ++G P+ G+G + ++E
Sbjct: 109 EAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHG-----IGLEIHEP 163
Query: 181 ICHGIPDSRALEDGDTINIDVTVYLNG 207
D LE G ++ +YL G
Sbjct: 164 PVLKAGDDTVLEPGMVFAVEPGLYLPG 190
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 87.9 bits (218), Expect = 2e-20
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ I +R + +A LE A ++PG+T EI + + GA F
Sbjct: 154 IKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGA-----EGPSF 208
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
V + N + H P R L DGD + ID+ NGY D + TF G DE R +
Sbjct: 209 DTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREI 267
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 76.0 bits (188), Expect = 6e-17
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY-PSPLGYGGFPKSVC 174
IE +R + R+A + E +KPG+T E+ + + GA PS F V
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPS------FDTIVA 54
Query: 175 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
+ N + HG+P R +E+GD + ID +GY D + T G+ DE +
Sbjct: 55 SGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKE 107
Score = 27.1 bits (61), Expect = 7.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 137 VKPGITTDEIDKAVHQMIIDNG 158
VKPG+T E+DKA +I + G
Sbjct: 123 VKPGVTAKEVDKAARDVIEEAG 144
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 70.6 bits (174), Expect = 1e-14
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 14/118 (11%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
+E +G++A++V E A L+KPG ++ + V I + GA P+ FP
Sbjct: 2 LEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FP--CNI 53
Query: 176 SVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
S+NE H P D R +GD + +D+ +++GY DT+ T D+ + +LV+
Sbjct: 54 SINEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTV---DLGGKYEDLVE 108
Score = 27.1 bits (61), Expect = 8.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 126 AAQVLEYAGTLVKPGITTDEIDKAVHQMI 154
+ + LE A +V+PG++ EI + + + I
Sbjct: 110 SEEALEAAIEVVRPGVSVGEIGRVIEETI 138
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 68.8 bits (169), Expect = 6e-14
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 14/118 (11%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
+E R +G + QV +YA +L+KPG+T EI + V I + GA P FP ++
Sbjct: 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGP------AFPVNL-- 52
Query: 176 SVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
S+NEC H P D L++GD + +D +++GY D++ T D D + +L++
Sbjct: 53 SINECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTV---DFDPKYDDLLE 107
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 62.9 bits (153), Expect = 9e-12
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
D + E +G++ ++V A + PG+ E+ + V I + GA P FP
Sbjct: 1 DIERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP------AFPC 54
Query: 172 SVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
++ S+NEC H P D +DGD + +D+ +++GY DT+ T D+ D+ NL
Sbjct: 55 NI--SINECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITV---DLGDQYDNL 109
Query: 229 VK 230
VK
Sbjct: 110 VK 111
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 46.4 bits (110), Expect = 4e-06
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 31/145 (21%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG----FPK 171
IE M +G A + L+KPG+ E+++ V + + P +G G +P
Sbjct: 10 IEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPY 69
Query: 172 SVCTSVNECICHGIPDSRALEDGDTINIDVTV------------------------YLNG 207
+ C +N+ + H P L++GD + +D+ + Y
Sbjct: 70 ATCCGLNDEVAHAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTES 129
Query: 208 YHG---DTSATFFCGDVDDEARNLV 229
Y G D+ + G DE +NL+
Sbjct: 130 YRGGLADSCWAYAVGTPSDEVKNLM 154
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 44.6 bits (106), Expect = 1e-05
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 120 RVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLG-YGGFPKSVC 174
+ +G++A +VL+ +L PG ++ DK + + + Y G C
Sbjct: 5 KTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEEL--GKVYKKEKKLEKGIAFPTC 62
Query: 175 TSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE 224
SVN C+CH P + L+DGD + ID+ +++GY + T G +
Sbjct: 63 ISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAET 116
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 44.3 bits (105), Expect = 2e-05
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 108 PEVHD------EKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-Y 160
P VH+ + I +R +G ++A A +PG+ +++ +H +GA Y
Sbjct: 165 PWVHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARY 224
Query: 161 PSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF 216
PS + V + N CI H + + DGD + ID GY GD + TF
Sbjct: 225 PS------YNTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTF 274
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 43.9 bits (104), Expect = 3e-05
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 113 EKGIECMRVSGRLAAQVLEYAGTLVKPGIT----TDEIDKAVHQMIIDNGAYPSPLGYG- 167
E+ + +R + + QV YA +++KPG+ + I+ ++I +G L G
Sbjct: 155 EEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADG-----LKCGW 209
Query: 168 GFPKSVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGY 208
FP S+N C H P D L D +D ++NG
Sbjct: 210 AFPTGC--SLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGR 251
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 41.4 bits (97), Expect = 2e-04
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 169 FPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE 224
FP C SVN C+ H P L++GD + ID+ +++G+ + TF G +E
Sbjct: 77 FP--TCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEE 134
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 38.7 bits (91), Expect = 0.001
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE MR + ++A+ A +PG++ E++ GA Y V
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL-AYSYI-----VAA 54
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF 216
N I H + + + L+DGD + ID GY D + TF
Sbjct: 55 GSNAAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTF 95
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 29.7 bits (67), Expect = 1.2
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 150 VHQMIIDNGAYPSPLGYGG--FPKSVCTSV 177
V ++IDNG+ + G+ G P +V S+
Sbjct: 6 VPTIVIDNGSGTTKAGFAGNDTPTTVFPSI 35
>gnl|CDD|239764 cd04097, mtEFG1_C, mtEFG1_C: C-terminus of mitochondrial
Elongation factor G1 (mtEFG1)-like proteins found in
eukaryotes. Eukaryotic cells harbor 2 protein
synthesis systems: one localized in the cytoplasm, the
other in the mitochondria. Most factors regulating
mitochondrial protein synthesis are encoded by nuclear
genes, translated in the cytoplasm, and then
transported to the mitochondria. The eukaryotic system
of elongation factor (EF) components is more complex
than that in prokaryotes, with both cytoplasmic and
mitochondrial elongation factors and multiple isoforms
being expressed in certain species. Eukaryotic EF-2
operates in the cytosolic protein synthesis machinery
of eukaryotes, EF-Gs in protein synthesis in bacteria.
Eukaryotic mtEFG1 proteins show significant homology to
bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired
mitochondrial protein synthesis, respiratory defects
and a tendency to lose mitochondrial DNA. There are two
forms of mtEFG present in mammals (designated mtEFG1s
and mtEFG2s) mtEFG2s are not present in this group.
Length = 78
Score = 27.7 bits (62), Expect = 1.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 7/28 (25%)
Query: 29 PLNQLFGYNS-------GKNQVSMQLSR 49
PLN +FGY++ GK + SM+ SR
Sbjct: 46 PLNDMFGYSTELRSMTQGKGEFSMEFSR 73
>gnl|CDD|221891 pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This
is a leucine-zipper-like or homeodomain-like region of
transposase TnpC of insertion element IS66.
Length = 77
Score = 27.7 bits (62), Expect = 1.5
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 65 DAEPNRRRKRLRPGKVSPHRPVPDHIPR 92
E R RPG+ +P+P+H+PR
Sbjct: 51 APEQPAAPPRRRPGR----KPLPEHLPR 74
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 29.6 bits (66), Expect = 1.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 185 IPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD 223
I D+ + GD I D + + GY D + TF G+ D
Sbjct: 246 IADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDK 284
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 29.3 bits (65), Expect = 1.7
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 124 RLAAQVLEY----AGTLVKPGITTDEIDKAVHQMIIDNGA------YPSPLGYGGFPKSV 173
R +A++ EY A L++ G T+ E+ A ++ + +G PK +
Sbjct: 188 RKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRFHLISVGADFSPKLI 247
Query: 174 CTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
++ C GD I D V ++GY D + TF G+ + R + +
Sbjct: 248 PSNTKAC------------SGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQ 292
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 29.0 bits (66), Expect = 2.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 187 DSRALEDGDTINIDVTVYLNG 207
+ RA E GD + ID +++G
Sbjct: 143 ERRAAEKGDRVTIDFEGFIDG 163
>gnl|CDD|216724 pfam01824, MatK_N, MatK/TrnK amino terminal region. The function
of this region is unknown.
Length = 331
Score = 29.0 bits (65), Expect = 2.3
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 21 NRFIHSTQPLNQ--LFGYNSGKNQVSMQLSRTFSGLADLLFNRRNLDAEPNRRRKR---L 75
N FI S NQ G+N KN S +S F+ + ++ F+ R + + + + L
Sbjct: 68 NHFIISVNDSNQNPFLGHN--KNLYSQMISEGFAVIVEIPFSLRLISSLEGKEIVKSHNL 125
Query: 76 RPGKVSPHRPVP 87
R S H P
Sbjct: 126 R----SIHSIFP 133
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 28.8 bits (64), Expect = 2.3
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
+E +R++ +A + E+ ++ G++ EI + + GA + F V +
Sbjct: 133 VEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-----SFDTIVAS 187
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFF 217
+ HG + + G+ + +D GY D + T
Sbjct: 188 GWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLL 229
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 29.0 bits (66), Expect = 2.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 185 IPDSRALEDGDTINIDVTVYLNG 207
+P R E+GD + ID ++G
Sbjct: 152 VPVERPAENGDRVTIDFVGSIDG 174
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 28.9 bits (64), Expect = 2.4
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 124 RLAAQVLEY----AGTLVKPGITTDEIDKAVHQMIIDNGA------YPSPLGYGGFPKSV 173
R +A++ EY A L++ G T+ E+ A ++ + +G PK +
Sbjct: 105 RKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRFHLISVGADFSPKLI 164
Query: 174 CTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
++ C GD I D V ++GY D + TF G+ + R + +
Sbjct: 165 PSNTKAC------------SGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQ 209
>gnl|CDD|227274 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 28.7 bits (64), Expect = 2.5
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 7 SLQLQPRLLSSFVGNRFIHSTQPLNQLFGYNS-GKNQVSMQLSRTFSGLADLLFNRRNLD 65
L L + ++ + I PL G NS GK+ L +SGL R
Sbjct: 2 ILSLSLKNFKPYINGKIILK--PLTVFIGPNSSGKSTTIQSLYLIYSGLTRSYALPRLAC 59
Query: 66 AEPNRRRK 73
AE +R +K
Sbjct: 60 AEYSRNKK 67
>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed.
Length = 404
Score = 28.5 bits (65), Expect = 2.9
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 28/106 (26%)
Query: 134 GTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD------ 187
GTL+ T E ++ + Q ++ A+ +V G+PD
Sbjct: 237 GTLI-----TGEEEEIMEQPVVTGIAFDKDE--------AKVTV-----VGVPDKPGIAA 278
Query: 188 --SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD-DEARNLVK 230
AL + + IN+D+ V G T TF D ++A L++
Sbjct: 279 QIFGALAEAN-INVDMIVQNVSEDGKTDITFTVPRDDLEKALELLE 323
>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional.
Length = 472
Score = 28.6 bits (64), Expect = 3.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 63 NLDAEPNRRRKRLRPGKVSPHRP 85
LD +P RR+ RP K +P R
Sbjct: 447 ELDDDPAPRRRTRRPRKRAPRRE 469
>gnl|CDD|223490 COG0413, PanB, Ketopantoate hydroxymethyltransferase [Coenzyme
metabolism].
Length = 268
Score = 28.3 bits (64), Expect = 3.4
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEI 146
D+ G++ + V L VL Y TL +T +++
Sbjct: 32 DQAGVDVLLVGDSLGMVVLGYDSTL---PVTLEDM 63
>gnl|CDD|217174 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family.
This family consists of taurine catabolism dioxygenases
of the TauD, TfdA family. TauD from E. coli is a
alpha-ketoglutarate-dependent taurine dioxygenase. This
enzyme catalyzes the oxygenolytic release of sulfite
from taurine. TfdA from Burkholderia sp. is a
2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate
dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a
2,4-dichlorophenoxyacetate monooxygenase. Also included
are gamma-Butyrobetaine hydroxylase enzymes
EC:1.14.11.1.
Length = 215
Score = 27.7 bits (62), Expect = 4.4
Identities = 18/80 (22%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 1 MVGGACSLQLQPRLLSSFVGNRFIHSTQPLNQLFGY-NSGKNQVSMQLSRTFSGLADLLF 59
V G L P + VG S L+ L + + + G DL+
Sbjct: 136 PVTGRKVLFNNPHFTTRIVGLPLAESQALLDALDAHLTDPEFTYRHKWQP---G--DLVI 190
Query: 60 --NRRNL-----DAEPNRRR 72
NRR L RR
Sbjct: 191 WDNRRVLHGRTAFDPTGRRH 210
>gnl|CDD|188463 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA-transferase.
This enzyme represents one of at least two mechanisms
for reclaiming CoA from butyryl-CoA at the end of
butyrate biosynthesis (an important process performed by
some colonic bacteria), namely transfer of CoA to
acetate. An alternate mechanism transfers the butyrate
onto inorganic phosphate, after which butyrate kinase
transfers the phosphate onto ADP, creating ATP [Energy
metabolism, Fermentation].
Length = 445
Score = 27.9 bits (62), Expect = 4.5
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 145 EIDKAVHQMIID---NGAYPSPLGYGGFPKSVCTSVNE 179
E+DKAV ++I++ NGA LG GG P +V + + E
Sbjct: 197 EVDKAVAKLIVEEIPNGACLQ-LGIGGMPNAVGSLIAE 233
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 27.9 bits (62), Expect = 4.7
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 183 HGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD 223
H +R ++ GD ++++ + GY+ T F +V D
Sbjct: 69 HNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSD 109
>gnl|CDD|202568 pfam03181, BURP, BURP domain. The BURP domain is found at the
C-terminus of several different plant proteins. It was
named after the proteins in which it was first
identified: the BNM2 clone-derived protein from Brassica
napus; USPs and USP-like proteins; RD22 from Arabidopsis
thaliana; and PG1beta from Lycopersicon esculentum. This
domain is around 230 amino acid residues long. It
possesses the following conserved features: two
phenylalanine residues at its N-terminus; two cysteine
residues; and four repeated cysteine-histidine motifs,
arranged as: CH-X(10)-CH-X(25-27)-CH-X(25-26)-CH, where
X can be any amino acid. The function of this domain is
unknown.
Length = 216
Score = 27.3 bits (61), Expect = 5.6
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 182 CHGIPDSRA----LEDGD-TINIDVTVYLNGYHGDTSA 214
CH +P +RA L D T V V H DTSA
Sbjct: 149 CHTVPKTRAYEVDLVGADGTKVKAVAV----CHTDTSA 182
>gnl|CDD|150427 pfam09752, DUF2048, Uncharacterized conserved protein (DUF2048).
The proteins in this family are conserved from plants
to vertebrates. The function is unknown.
Length = 337
Score = 27.4 bits (61), Expect = 6.5
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 52 SGLADLLFNRRNLDAEPNRRR-KRLRPGKVSPHRPVPDHIP 91
S A R L AE R R + L P K SP RPV H+
Sbjct: 60 SPCATYFPGR--LPAESRRARFQWLLPKKWSPKRPVCVHLA 98
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 26.9 bits (60), Expect = 9.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 206 NGYHGDTSATFFCGDVDDEARNLVKG 231
+GYHGDT D D+ +L KG
Sbjct: 142 HGYHGDTFGAMSVCDPDNSMHSLYKG 167
>gnl|CDD|235947 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase;
Validated.
Length = 342
Score = 26.8 bits (60), Expect = 9.6
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY 160
L + L + T ++ G ++D V+ I +N Y
Sbjct: 149 LKNKNLNISSTKIRKGNLLGKLDPKVNDYINENFLY 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.422
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,004,042
Number of extensions: 1138655
Number of successful extensions: 1068
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1053
Number of HSP's successfully gapped: 50
Length of query: 231
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 137
Effective length of database: 6,768,326
Effective search space: 927260662
Effective search space used: 927260662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)