Query 026867
Match_columns 231
No_of_seqs 119 out of 1540
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 13:49:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 1.8E-27 3.9E-32 207.2 20.3 222 2-225 128-355 (358)
2 PRK11453 O-acetylserine/cystei 99.9 7E-24 1.5E-28 181.2 16.1 182 2-204 104-290 (299)
3 PRK11689 aromatic amino acid e 99.9 3.2E-23 6.9E-28 176.8 13.0 182 2-204 109-290 (295)
4 PRK11272 putative DMT superfam 99.9 4.9E-22 1.1E-26 169.3 16.0 174 5-205 116-289 (292)
5 TIGR00950 2A78 Carboxylate/Ami 99.9 2.4E-21 5.1E-26 161.9 16.3 169 2-197 91-260 (260)
6 PRK10532 threonine and homoser 99.9 1.3E-20 2.7E-25 160.7 17.0 173 7-208 116-288 (293)
7 TIGR00817 tpt Tpt phosphate/ph 99.9 5.2E-21 1.1E-25 163.6 12.3 181 2-207 109-299 (302)
8 PF06027 DUF914: Eukaryotic pr 99.8 4.6E-20 1E-24 158.3 16.6 190 2-209 123-313 (334)
9 TIGR03340 phn_DUF6 phosphonate 99.8 3.8E-20 8.3E-25 156.8 14.0 171 2-198 107-280 (281)
10 PRK15430 putative chlorampheni 99.8 6.6E-20 1.4E-24 156.5 11.7 169 2-202 117-286 (296)
11 COG0697 RhaT Permeases of the 99.8 5.3E-17 1.1E-21 136.7 16.6 170 4-202 117-288 (292)
12 PTZ00343 triose or hexose phos 99.8 1.5E-17 3.3E-22 145.0 13.5 176 2-202 158-349 (350)
13 COG2510 Predicted membrane pro 99.6 1E-14 2.2E-19 106.3 13.7 136 63-201 4-139 (140)
14 PF00892 EamA: EamA-like trans 99.6 1.1E-15 2.4E-20 113.1 8.9 125 72-200 1-125 (126)
15 TIGR00776 RhaT RhaT L-rhamnose 99.6 1.5E-14 3.3E-19 123.1 11.3 173 2-201 104-288 (290)
16 TIGR00688 rarD rarD protein. T 99.6 1.8E-14 3.8E-19 120.4 11.3 142 2-176 114-255 (256)
17 COG5006 rhtA Threonine/homoser 99.6 6.9E-14 1.5E-18 113.3 13.9 169 11-205 118-286 (292)
18 KOG2765 Predicted membrane pro 99.5 1.2E-14 2.6E-19 123.5 8.0 187 4-206 205-395 (416)
19 PF08449 UAA: UAA transporter 99.5 2E-13 4.2E-18 117.0 15.0 190 2-206 108-302 (303)
20 COG2962 RarD Predicted permeas 99.5 2.9E-13 6.2E-18 112.1 13.2 170 2-203 116-285 (293)
21 KOG4510 Permease of the drug/m 99.5 1.9E-15 4.1E-20 123.2 0.3 186 2-203 141-327 (346)
22 KOG1580 UDP-galactose transpor 99.5 1.8E-12 3.9E-17 104.2 15.8 186 2-205 129-317 (337)
23 KOG2766 Predicted membrane pro 99.4 5.7E-14 1.2E-18 113.9 -0.5 185 2-209 122-307 (336)
24 PRK15430 putative chlorampheni 99.3 2.8E-11 6.1E-16 103.3 13.8 138 59-200 5-144 (296)
25 TIGR03340 phn_DUF6 phosphonate 99.3 9.1E-11 2E-15 99.4 14.6 134 64-202 3-136 (281)
26 TIGR00688 rarD rarD protein. T 99.3 5.4E-11 1.2E-15 99.4 13.0 136 62-200 2-141 (256)
27 PRK02971 4-amino-4-deoxy-L-ara 99.2 5.9E-10 1.3E-14 83.5 12.0 123 62-205 2-126 (129)
28 PLN00411 nodulin MtN21 family 99.1 7.3E-10 1.6E-14 96.9 13.1 138 63-202 14-157 (358)
29 PRK11272 putative DMT superfam 99.1 2.7E-09 5.8E-14 91.0 14.2 132 64-202 10-142 (292)
30 PF03151 TPT: Triose-phosphate 99.1 4.5E-09 9.7E-14 80.7 13.3 137 63-200 1-152 (153)
31 TIGR00950 2A78 Carboxylate/Ami 99.1 2.9E-09 6.2E-14 88.8 12.3 120 74-202 1-120 (260)
32 PRK11453 O-acetylserine/cystei 99.0 1.4E-08 3E-13 86.9 13.8 126 65-202 7-133 (299)
33 PF13536 EmrE: Multidrug resis 99.0 3.7E-09 7.9E-14 77.5 8.7 107 97-204 3-109 (113)
34 PRK11689 aromatic amino acid e 98.9 3.4E-08 7.4E-13 84.3 14.3 131 62-202 4-138 (295)
35 KOG2234 Predicted UDP-galactos 98.9 7.7E-08 1.7E-12 82.2 16.1 189 3-205 137-326 (345)
36 KOG1581 UDP-galactose transpor 98.9 5.6E-09 1.2E-13 87.1 7.4 188 2-205 127-317 (327)
37 PF04142 Nuc_sug_transp: Nucle 98.9 3E-08 6.6E-13 82.3 11.4 183 2-192 61-244 (244)
38 PRK15051 4-amino-4-deoxy-L-ara 98.8 3.7E-08 8E-13 72.0 8.8 66 135-200 43-108 (111)
39 PTZ00343 triose or hexose phos 98.8 3.3E-07 7.2E-12 80.1 15.7 125 75-201 62-186 (350)
40 TIGR00817 tpt Tpt phosphate/ph 98.8 1.9E-07 4.2E-12 79.8 13.2 120 77-200 17-136 (302)
41 TIGR00803 nst UDP-galactose tr 98.7 1.1E-07 2.3E-12 77.9 9.5 187 2-198 22-221 (222)
42 COG0697 RhaT Permeases of the 98.7 1.1E-06 2.4E-11 73.8 14.9 142 60-205 5-147 (292)
43 TIGR00776 RhaT RhaT L-rhamnose 98.6 6.1E-07 1.3E-11 76.5 12.2 132 63-203 2-138 (290)
44 KOG1582 UDP-galactose transpor 98.6 6.1E-07 1.3E-11 74.1 11.1 183 3-206 151-337 (367)
45 KOG1443 Predicted integral mem 98.6 9.6E-07 2.1E-11 74.0 11.7 173 5-202 130-316 (349)
46 KOG1441 Glucose-6-phosphate/ph 98.6 1.3E-08 2.9E-13 86.9 0.6 178 2-208 127-314 (316)
47 COG2962 RarD Predicted permeas 98.5 2.7E-06 5.8E-11 71.0 11.3 140 62-204 7-147 (293)
48 PRK10532 threonine and homoser 98.4 6.8E-06 1.5E-10 70.1 14.0 129 59-201 9-137 (293)
49 KOG1444 Nucleotide-sugar trans 98.3 1.2E-05 2.6E-10 68.0 12.7 181 2-209 121-308 (314)
50 KOG1583 UDP-N-acetylglucosamin 98.3 1E-05 2.2E-10 67.1 11.4 184 2-201 109-314 (330)
51 PRK10452 multidrug efflux syst 98.3 3.8E-06 8.2E-11 62.0 7.9 70 135-204 36-106 (120)
52 PF06027 DUF914: Eukaryotic pr 98.3 3E-05 6.6E-10 67.1 14.3 144 59-204 10-154 (334)
53 PF06800 Sugar_transport: Suga 98.3 3E-05 6.5E-10 64.9 13.5 171 2-198 90-268 (269)
54 PRK09541 emrE multidrug efflux 98.1 1.4E-05 3.1E-10 58.1 7.6 69 136-204 37-106 (110)
55 KOG4314 Predicted carbohydrate 98.1 4.5E-06 9.8E-11 66.0 5.3 179 3-204 98-279 (290)
56 COG5070 VRG4 Nucleotide-sugar 98.1 7.2E-06 1.6E-10 66.0 6.4 185 2-204 112-299 (309)
57 PF05653 Mg_trans_NIPA: Magnes 98.1 1.3E-05 2.9E-10 68.6 8.3 69 136-204 220-295 (300)
58 PF08449 UAA: UAA transporter 98.0 0.00024 5.2E-09 60.9 13.4 126 77-208 15-143 (303)
59 KOG3912 Predicted integral mem 97.9 6.9E-05 1.5E-09 62.4 9.1 184 4-201 132-334 (372)
60 PF05653 Mg_trans_NIPA: Magnes 97.9 8.2E-05 1.8E-09 63.7 9.5 125 58-207 3-128 (300)
61 PRK11431 multidrug efflux syst 97.9 0.00016 3.5E-09 52.1 9.1 65 137-201 37-102 (105)
62 KOG1442 GDP-fucose transporter 97.8 1.5E-05 3.2E-10 66.1 3.7 185 2-208 146-334 (347)
63 KOG4510 Permease of the drug/m 97.8 1.2E-05 2.5E-10 66.5 2.9 138 59-204 35-172 (346)
64 PRK10650 multidrug efflux syst 97.8 0.00036 7.7E-09 50.6 9.7 63 138-200 44-107 (109)
65 PRK13499 rhamnose-proton sympo 97.8 0.00024 5.1E-09 61.7 10.1 140 59-204 4-156 (345)
66 COG2076 EmrE Membrane transpor 97.6 0.0002 4.4E-09 51.3 6.4 66 138-203 39-105 (106)
67 PRK13499 rhamnose-proton sympo 97.6 0.0093 2E-07 51.9 17.7 175 12-202 135-342 (345)
68 PF04657 DUF606: Protein of un 97.6 0.0017 3.6E-08 49.2 11.6 132 63-198 2-138 (138)
69 PF00893 Multi_Drug_Res: Small 97.5 0.00054 1.2E-08 48.3 7.6 55 138-192 38-93 (93)
70 COG3238 Uncharacterized protei 97.3 0.0051 1.1E-07 47.0 11.1 140 61-203 4-148 (150)
71 PF06800 Sugar_transport: Suga 97.3 0.0064 1.4E-07 51.1 11.9 82 126-208 43-129 (269)
72 PF04142 Nuc_sug_transp: Nucle 97.1 0.0023 5E-08 53.2 7.3 69 138-206 26-94 (244)
73 COG4975 GlcU Putative glucose 97.0 0.0005 1.1E-08 56.3 2.4 133 63-205 3-140 (288)
74 PF10639 UPF0546: Uncharacteri 96.7 0.008 1.7E-07 43.8 6.8 109 69-199 3-112 (113)
75 KOG2234 Predicted UDP-galactos 96.7 0.12 2.5E-06 44.8 14.8 145 62-206 15-169 (345)
76 KOG2922 Uncharacterized conser 96.2 0.0018 3.8E-08 55.1 1.1 76 127-203 226-308 (335)
77 KOG2922 Uncharacterized conser 96.1 0.0035 7.6E-08 53.4 2.2 128 57-208 16-143 (335)
78 PF07857 DUF1632: CEO family ( 95.8 0.019 4E-07 48.0 5.3 132 63-206 1-139 (254)
79 KOG2765 Predicted membrane pro 95.7 0.013 2.8E-07 50.9 4.2 68 139-206 169-236 (416)
80 KOG1441 Glucose-6-phosphate/ph 95.7 0.0085 1.8E-07 51.6 3.0 123 77-202 32-156 (316)
81 COG4975 GlcU Putative glucose 94.5 0.015 3.3E-07 47.9 1.0 131 59-199 149-283 (288)
82 KOG4314 Predicted carbohydrate 94.0 0.033 7.2E-07 44.5 2.0 66 141-206 65-130 (290)
83 KOG1580 UDP-galactose transpor 93.6 0.23 5E-06 40.9 6.0 131 71-207 22-163 (337)
84 PRK02237 hypothetical protein; 92.1 0.77 1.7E-05 33.0 6.3 45 160-204 64-108 (109)
85 PF06379 RhaT: L-rhamnose-prot 91.0 1.4 3.1E-05 38.2 8.1 146 59-208 4-160 (344)
86 PRK09541 emrE multidrug efflux 89.9 0.17 3.6E-06 36.8 1.3 28 2-29 75-102 (110)
87 PRK10452 multidrug efflux syst 89.4 0.18 3.9E-06 37.2 1.2 28 2-29 75-102 (120)
88 PF02694 UPF0060: Uncharacteri 89.3 0.84 1.8E-05 32.7 4.4 41 164-204 66-106 (107)
89 PF05977 MFS_3: Transmembrane 89.1 12 0.00026 34.7 13.2 39 160-198 351-389 (524)
90 COG5006 rhtA Threonine/homoser 88.6 9 0.0002 32.1 10.5 101 63-172 13-114 (292)
91 KOG2766 Predicted membrane pro 87.7 0.11 2.3E-06 43.3 -1.1 136 59-202 15-151 (336)
92 KOG1443 Predicted integral mem 87.5 4.6 0.0001 34.7 8.4 122 82-204 36-159 (349)
93 KOG1442 GDP-fucose transporter 86.5 1 2.2E-05 38.0 4.0 110 89-200 59-173 (347)
94 KOG3912 Predicted integral mem 86.3 0.82 1.8E-05 38.7 3.3 64 138-201 95-158 (372)
95 PF03547 Mem_trans: Membrane t 86.0 23 0.0005 31.0 13.0 24 128-151 62-85 (385)
96 KOG1444 Nucleotide-sugar trans 85.9 20 0.00042 31.0 11.4 117 78-200 28-148 (314)
97 PF04342 DUF486: Protein of un 82.9 1.8 3.9E-05 30.9 3.4 31 170-200 77-107 (108)
98 PF07168 Ureide_permease: Urei 82.2 0.89 1.9E-05 38.8 1.9 129 68-199 2-144 (336)
99 COG1742 Uncharacterized conser 79.5 7.2 0.00016 27.8 5.4 45 160-204 63-107 (109)
100 PF15102 TMEM154: TMEM154 prot 77.8 2.9 6.3E-05 31.8 3.2 24 186-209 66-89 (146)
101 KOG4831 Unnamed protein [Funct 77.8 6.1 0.00013 28.4 4.6 59 141-200 64-124 (125)
102 PF08507 COPI_assoc: COPI asso 77.7 4.2 9.1E-05 30.5 4.2 10 188-197 92-101 (136)
103 PRK06638 NADH:ubiquinone oxido 76.1 39 0.00084 27.1 14.7 35 170-204 133-169 (198)
104 COG3247 HdeD Uncharacterized c 74.7 41 0.00089 26.7 12.2 69 129-200 104-176 (185)
105 PF12606 RELT: Tumour necrosis 74.6 3.6 7.7E-05 25.3 2.5 20 193-212 15-34 (50)
106 KOG1581 UDP-galactose transpor 74.5 56 0.0012 28.2 11.2 111 90-206 50-160 (327)
107 COG3169 Uncharacterized protei 73.6 29 0.00064 24.5 8.6 32 170-201 84-115 (116)
108 TIGR02840 spore_YtaF putative 70.6 3.2 7E-05 33.5 2.1 46 155-200 33-80 (206)
109 PRK13108 prolipoprotein diacyl 69.7 20 0.00043 32.7 7.1 47 158-204 226-277 (460)
110 PF06679 DUF1180: Protein of u 68.6 6.3 0.00014 30.6 3.3 11 217-227 142-152 (163)
111 KOG1583 UDP-N-acetylglucosamin 68.2 7.3 0.00016 33.1 3.7 67 143-209 78-145 (330)
112 COG3086 RseC Positive regulato 67.3 4 8.6E-05 31.0 1.8 55 151-208 70-130 (150)
113 PF09656 PGPGW: Putative trans 65.4 30 0.00066 21.5 5.5 46 13-87 4-49 (53)
114 PRK11902 ampG muropeptide tran 64.4 98 0.0021 27.0 13.6 21 181-201 368-388 (402)
115 PRK05122 major facilitator sup 64.0 97 0.0021 26.8 13.7 37 168-204 354-390 (399)
116 TIGR00892 2A0113 monocarboxyla 60.5 80 0.0017 28.3 9.4 11 146-156 355-365 (455)
117 cd08764 Cyt_b561_CG1275_like N 58.8 99 0.0021 25.2 13.1 80 123-204 94-196 (214)
118 PRK10489 enterobactin exporter 58.8 1.3E+02 0.0027 26.4 13.1 19 185-203 382-400 (417)
119 PF06379 RhaT: L-rhamnose-prot 57.2 1.4E+02 0.0029 26.3 13.9 180 8-201 131-340 (344)
120 PRK10435 cadB lysine/cadaverin 57.0 1.4E+02 0.003 26.7 10.3 52 127-178 350-402 (435)
121 PF07857 DUF1632: CEO family ( 55.0 93 0.002 26.1 8.1 29 59-87 180-208 (254)
122 PF01350 Flavi_NS4A: Flaviviru 54.7 93 0.002 23.7 8.1 65 141-209 60-124 (144)
123 PF06123 CreD: Inner membrane 54.6 1.7E+02 0.0037 26.6 11.9 119 63-199 301-419 (430)
124 TIGR01167 LPXTG_anchor LPXTG-m 53.8 23 0.00049 19.3 3.0 19 181-199 10-28 (34)
125 TIGR00905 2A0302 transporter, 53.3 1.2E+02 0.0026 27.5 9.3 45 160-205 393-438 (473)
126 PRK10263 DNA translocase FtsK; 53.1 2.9E+02 0.0064 28.9 13.1 16 13-28 23-38 (1355)
127 PF01102 Glycophorin_A: Glycop 52.5 8.3 0.00018 28.5 1.3 17 188-204 76-92 (122)
128 PF07214 DUF1418: Protein of u 52.5 22 0.00048 25.0 3.3 19 184-202 48-66 (96)
129 PRK11469 hypothetical protein; 51.7 8.2 0.00018 30.7 1.3 42 159-200 44-86 (188)
130 PF02487 CLN3: CLN3 protein; 51.4 84 0.0018 28.2 7.7 22 8-29 86-107 (402)
131 TIGR00840 b_cpa1 sodium/hydrog 50.9 1.9E+02 0.0041 27.2 10.3 44 60-104 8-51 (559)
132 COG2271 UhpC Sugar phosphate p 49.7 2.1E+02 0.0045 26.1 10.9 40 164-204 168-208 (448)
133 PF04246 RseC_MucC: Positive r 49.5 7.4 0.00016 29.0 0.7 49 155-204 67-119 (135)
134 PF05297 Herpes_LMP1: Herpesvi 48.5 5.7 0.00012 33.7 -0.1 27 139-165 118-144 (381)
135 TIGR00881 2A0104 phosphoglycer 48.5 1.6E+02 0.0035 24.6 11.6 18 72-89 41-58 (379)
136 PRK11010 ampG muropeptide tran 47.5 2.2E+02 0.0048 25.9 14.0 53 150-202 346-402 (491)
137 COG1971 Predicted membrane pro 47.2 17 0.00037 29.0 2.4 42 159-200 44-86 (190)
138 COG4854 Predicted membrane pro 47.0 51 0.0011 23.9 4.6 57 7-87 65-123 (126)
139 TIGR01299 synapt_SV2 synaptic 45.1 3.1E+02 0.0067 26.8 14.8 38 70-108 604-641 (742)
140 PRK11715 inner membrane protei 43.7 2.6E+02 0.0055 25.5 11.6 119 63-199 307-425 (436)
141 PF08693 SKG6: Transmembrane a 42.6 24 0.00052 20.6 1.9 18 188-205 22-39 (40)
142 TIGR03810 arg_ornith_anti argi 40.3 2.8E+02 0.0061 25.0 9.9 40 164-204 392-432 (468)
143 PF01102 Glycophorin_A: Glycop 39.9 13 0.00028 27.5 0.7 18 186-203 70-87 (122)
144 COG4657 RnfA Predicted NADH:ub 38.1 1.1E+02 0.0024 23.9 5.4 20 61-80 102-121 (193)
145 COG4736 CcoQ Cbb3-type cytochr 37.7 27 0.00058 22.4 1.8 23 186-208 15-37 (60)
146 PF06609 TRI12: Fungal trichot 37.5 3.7E+02 0.008 25.6 13.2 25 6-30 232-256 (599)
147 PRK10599 calcium/sodium:proton 37.4 3E+02 0.0064 24.5 14.0 120 10-153 9-131 (366)
148 PF11295 DUF3096: Protein of u 37.3 37 0.0008 19.7 2.1 33 166-198 1-33 (39)
149 PRK10862 SoxR reducing system 37.3 8.9 0.00019 29.5 -0.5 21 156-176 75-95 (154)
150 PF04306 DUF456: Protein of un 37.1 1.8E+02 0.0039 21.9 7.7 71 126-206 31-102 (140)
151 PF03729 DUF308: Short repeat 35.4 1.1E+02 0.0025 19.1 4.8 14 16-29 2-15 (72)
152 MTH00057 ND6 NADH dehydrogenas 35.4 2.2E+02 0.0049 22.5 12.9 35 170-204 132-168 (186)
153 PF08507 COPI_assoc: COPI asso 34.9 52 0.0011 24.5 3.3 28 166-201 85-112 (136)
154 PF15345 TMEM51: Transmembrane 34.3 23 0.00049 29.1 1.3 19 188-206 68-86 (233)
155 PF14851 FAM176: FAM176 family 33.4 1E+02 0.0022 23.8 4.7 27 143-169 7-33 (153)
156 TIGR02611 conserved hypothetic 32.6 1.9E+02 0.0041 21.3 5.7 24 63-86 49-72 (121)
157 KOG1330 Sugar transporter/spin 32.2 4.1E+02 0.009 24.6 9.8 56 57-112 283-340 (493)
158 COG2814 AraJ Arabinose efflux 32.1 3.8E+02 0.0082 24.1 11.3 79 130-208 306-391 (394)
159 PRK12437 prolipoprotein diacyl 31.8 1.8E+02 0.0039 24.4 6.5 46 157-202 206-256 (269)
160 PF07444 Ycf66_N: Ycf66 protei 30.6 33 0.00071 23.6 1.4 25 180-204 4-28 (84)
161 COG4858 Uncharacterized membra 30.4 2.9E+02 0.0062 22.2 10.3 38 128-165 127-166 (226)
162 TIGR00544 lgt prolipoprotein d 30.3 1.4E+02 0.0031 25.2 5.6 44 158-201 214-266 (278)
163 TIGR02005 PTS-IIBC-alpha PTS s 29.7 4.7E+02 0.01 24.5 9.2 29 129-157 385-413 (524)
164 PF12832 MFS_1_like: MFS_1 lik 29.1 1E+02 0.0022 20.4 3.7 48 127-174 6-53 (77)
165 PRK15049 L-asparagine permease 28.9 4.6E+02 0.0099 24.0 11.6 9 163-171 423-431 (499)
166 TIGR00894 2A0114euk Na(+)-depe 28.0 4.3E+02 0.0093 23.4 9.2 17 11-27 14-30 (465)
167 PRK10644 arginine:agmatin anti 27.9 4.4E+02 0.0095 23.5 10.4 47 131-177 353-402 (445)
168 PF05545 FixQ: Cbb3-type cytoc 27.3 40 0.00087 20.3 1.3 17 189-205 18-34 (49)
169 PF11023 DUF2614: Protein of u 27.2 2.2E+02 0.0048 20.7 5.2 23 7-29 5-27 (114)
170 COG5336 Uncharacterized protei 27.1 1.1E+02 0.0023 22.2 3.6 36 165-200 55-93 (116)
171 PRK10110 bifunctional PTS syst 27.1 3.6E+02 0.0077 25.2 8.0 34 126-159 395-428 (530)
172 PF11022 DUF2611: Protein of u 26.9 41 0.00088 22.3 1.3 28 173-200 4-32 (71)
173 PF15099 PIRT: Phosphoinositid 26.0 18 0.0004 26.7 -0.5 16 130-145 58-73 (129)
174 TIGR00910 2A0307_GadC glutamat 25.4 5.3E+02 0.012 23.7 12.5 14 91-104 331-344 (507)
175 PRK09874 drug efflux system pr 25.3 4.3E+02 0.0094 22.6 14.5 19 181-199 376-394 (408)
176 PLN00028 nitrate transmembrane 24.2 5.3E+02 0.011 23.2 10.8 15 186-200 417-431 (476)
177 CHL00196 psbY photosystem II p 24.2 1.5E+02 0.0032 16.9 4.2 23 61-83 5-27 (36)
178 KOG4332 Predicted sugar transp 23.3 5E+02 0.011 22.6 11.9 122 55-178 277-399 (454)
179 PF09534 Trp_oprn_chp: Tryptop 23.0 1.2E+02 0.0025 24.3 3.5 14 16-29 2-15 (189)
180 TIGR01998 PTS-II-BC-nag PTS sy 22.9 5E+02 0.011 23.9 8.0 31 126-156 348-378 (476)
181 KOG0847 Transcription factor, 22.7 51 0.0011 26.9 1.4 27 183-209 200-226 (288)
182 COG4147 DhlC Predicted symport 21.8 1.1E+02 0.0024 28.2 3.5 66 140-205 433-510 (529)
183 PF06298 PsbY: Photosystem II 21.7 1.7E+02 0.0037 16.6 4.2 23 61-83 5-27 (36)
184 PF15048 OSTbeta: Organic solu 21.5 79 0.0017 23.4 2.1 12 188-199 43-54 (125)
185 TIGR02004 PTS-IIBC-malX PTS sy 21.4 4.8E+02 0.01 24.3 7.7 35 126-160 386-420 (517)
186 COG0833 LysP Amino acid transp 21.3 6.9E+02 0.015 23.5 9.8 44 135-178 414-463 (541)
187 PHA03049 IMV membrane protein; 21.2 1.2E+02 0.0026 19.7 2.7 22 185-206 6-27 (68)
188 PRK09584 tppB putative tripept 21.1 6.4E+02 0.014 23.0 11.4 33 133-165 391-423 (500)
189 PF15471 TMEM171: Transmembran 20.8 1.1E+02 0.0025 25.8 3.1 19 183-201 161-179 (319)
190 PF11384 DUF3188: Protein of u 20.7 91 0.002 19.0 2.0 19 183-201 27-45 (49)
191 PRK11246 hypothetical protein; 20.7 1.6E+02 0.0035 24.1 3.9 20 9-28 7-26 (218)
192 PF04156 IncA: IncA protein; 20.4 2.1E+02 0.0045 22.3 4.6 15 15-29 13-27 (191)
193 KOG1623 Multitransmembrane pro 20.1 2.9E+02 0.0063 23.0 5.4 17 64-80 45-61 (243)
194 COG5070 VRG4 Nucleotide-sugar 20.0 5.2E+02 0.011 21.5 7.6 107 91-204 37-143 (309)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=1.8e-27 Score=207.22 Aligned_cols=222 Identities=45% Similarity=0.799 Sum_probs=161.8
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCC--CCccccccCCchhhHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPL--LQWPLCISLSNWVTGGFLLIAQCLLNSIWYI 79 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v 79 (231)
|++-+|||++++|++|++++++|+.++...+++.... +++++..|. .+++...+..++..|++++++|+++||+|++
T Consensus 128 e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~i 206 (358)
T PLN00411 128 EKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV-ASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFI 206 (358)
T ss_pred chhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc-ccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4445799999999999999999999886333322110 000000000 0001111223456799999999999999999
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCC-cccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceee
Q 026867 80 LQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQD-LSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYI 158 (231)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~ 158 (231)
.+|+..+++++....+++++.++++.+.+.+...++. ...|..........++|.+++ +.++|.+|++++++.+|+++
T Consensus 207 l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~a 285 (358)
T PLN00411 207 LQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYL 285 (358)
T ss_pred HHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHH
Confidence 9999988887566778888888888777766665432 222322122234557788875 67899999999999999999
Q ss_pred eehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccccCccC---CCCCCCcccccccc
Q 026867 159 AIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEEGTTY---SSDSKTPLLQSLKV 225 (231)
Q Consensus 159 s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 225 (231)
+.+.+++|++++++|++++||++++.+++|+++|+.|++++.+.++|+.+++. +++++.|+.-+++|
T Consensus 286 s~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (358)
T PLN00411 286 AIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFSGKEKTPLLLNGKN 355 (358)
T ss_pred HHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCccccccchhhhhccc
Confidence 99999999999999999999999999999999999999999887776655442 23455666655555
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.92 E-value=7e-24 Score=181.17 Aligned_cols=182 Identities=16% Similarity=0.169 Sum_probs=142.8
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+++++|||+++++++|+.++++|+.++. ..+ .+ +......|+++++.++++||.|.+.+
T Consensus 104 ~~~~l~e~~~~~~~~~~~l~~~Gv~ll~-~~~--~~------------------~~~~~~~G~~l~l~aal~~a~~~v~~ 162 (299)
T PRK11453 104 GAFTFGERLQGKQLAGIALAIFGVLVLI-EDS--LN------------------GQHVAMLGFMLTLAAAFSWACGNIFN 162 (299)
T ss_pred HHHHhcCcCcHHHHHHHHHHHHhHHHhc-ccc--CC------------------CcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999998885 211 11 11223469999999999999999999
Q ss_pred HHHHhhcCh--hHHHHHHHHHHHHHHHHHHHHhhcCCc---ccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Q 026867 82 AHIIKIYPA--ELVVVSLYLLCASIISVPACLMAEQDL---SAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPV 156 (231)
Q Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~ 156 (231)
|+..++.+. ......+.+..+.+.........++.. ..+...+...|..++|+|+++++++|.+|++++++.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~ 242 (299)
T PRK11453 163 KKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETW 242 (299)
T ss_pred HHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 997665432 234455666665554444444333211 111122235799999999999999999999999999999
Q ss_pred eeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 157 YIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 157 ~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
+++.+.+++|+++.+++++++||++++.+++|++++++|+++..+.++
T Consensus 243 ~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 243 RVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999876665
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.90 E-value=3.2e-23 Score=176.80 Aligned_cols=182 Identities=11% Similarity=0.108 Sum_probs=134.2
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+++++|||++++|++|++++++|+.++. ..++..+.. + ...+..+...|++++++|+++||.|.+..
T Consensus 109 ~~~~~~e~~~~~~~~g~~l~~~Gv~li~-~~~~~~~~~----------~--~~~~~~~~~~G~~~~l~aa~~~A~~~v~~ 175 (295)
T PRK11689 109 AVLFNGQKANWLLIPGLLLALAGVAWVL-GGDNGLSLA----------E--LINNIASNPLSYGLAFIGAFIWAAYCNVT 175 (295)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhHhhee-cCCccchhh----------h--hhhccccChHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999998885 221111000 0 00001123469999999999999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeeh
Q 026867 82 AHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIF 161 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~ 161 (231)
||..++.+ +..... ..+++.+.+...+.+. . .... +...|..+++.++ +++++|.+|++++|+.++++++.+
T Consensus 176 k~~~~~~~-~~~~~~---~~~~~~l~~~~~~~~~-~-~~~~-~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~ 247 (295)
T PRK11689 176 RKYARGKN-GITLFF---ILTALALWIKYFLSPQ-P-AMVF-SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATA 247 (295)
T ss_pred hhccCCCC-chhHHH---HHHHHHHHHHHHHhcC-c-cccC-CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHH
Confidence 99876654 554322 2233333333333221 1 1111 2256888888884 789999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 162 KPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 162 ~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
.+++|+++++++++++||++++.+++|+++|+.|+++....+|
T Consensus 248 ~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 248 SYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 9999999999999999999999999999999999988765554
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.89 E-value=4.9e-22 Score=169.26 Aligned_cols=174 Identities=18% Similarity=0.217 Sum_probs=142.5
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026867 5 TLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQAHI 84 (231)
Q Consensus 5 ~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~~~ 84 (231)
++|||+++++++|++++++|+.++. .++ . ......|++++++++++||.|.+..|+.
T Consensus 116 ~~~e~~~~~~~~~~~la~~Gv~ll~-~~~-~---------------------~~~~~~G~l~~l~a~~~~a~~~~~~~~~ 172 (292)
T PRK11272 116 LFGIRTRKLEWLGIAIGLAGIVLLN-SGG-N---------------------LSGNPWGAILILIASASWAFGSVWSSRL 172 (292)
T ss_pred HhcccCchhHHHHHHHHHHhHHHHh-cCc-c---------------------cccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3699999999999999999988774 211 1 0122469999999999999999999986
Q ss_pred HhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhch
Q 026867 85 IKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPL 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~ 164 (231)
.++. +...+.+++.++++.+.+.....+..... .++...|..++++++++++++|.+|++++|+.++.+++.+.++
T Consensus 173 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l 248 (292)
T PRK11272 173 PLPV--GMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYV 248 (292)
T ss_pred CCCc--chHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 5432 45567788888888877776653322111 1223579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCcc
Q 026867 165 SIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 165 ~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~ 205 (231)
+|+++++++++++||++++.+++|+++++.|+++..+++++
T Consensus 249 ~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 249 NPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998765553
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.88 E-value=2.4e-21 Score=161.86 Aligned_cols=169 Identities=20% Similarity=0.313 Sum_probs=140.7
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+.+++|||+++++++|+.++++|+.++. .++ + ......|++++++++++|+.+.+..
T Consensus 91 ~~l~~~e~~~~~~~~gi~i~~~Gv~li~-~~~---~-------------------~~~~~~G~~~~l~a~~~~a~~~~~~ 147 (260)
T TIGR00950 91 SDLMGKERPRKLVLLAAVLGLAGAVLLL-SDG---N-------------------LSINPAGLLLGLGSGISFALGTVLY 147 (260)
T ss_pred HHHHccCCCcHHHHHHHHHHHHhHHhhc-cCC---c-------------------ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999998885 221 0 1234579999999999999999999
Q ss_pred HHHHhhcC-hhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeee
Q 026867 82 AHIIKIYP-AELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAI 160 (231)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~ 160 (231)
|+..++.+ ++.....+.+.++++++.+..+..++.. .. +...|..+++++++++.++|.+|++++++.++.+++.
T Consensus 148 k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~ 223 (260)
T TIGR00950 148 KRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASI 223 (260)
T ss_pred hHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 99876654 2345555778888888877777643221 11 2357888999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhh
Q 026867 161 FKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFY 197 (231)
Q Consensus 161 ~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~ 197 (231)
+.+++|+++.+++++++||++++.+++|+++++.|++
T Consensus 224 ~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 224 LALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999863
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.86 E-value=1.3e-20 Score=160.65 Aligned_cols=173 Identities=16% Similarity=0.147 Sum_probs=133.3
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026867 7 RSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQAHIIK 86 (231)
Q Consensus 7 kek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~~~~~ 86 (231)
+||++ +..++.++++|+.++. ..+.+. ......|++++++++++||.|.+..|+..+
T Consensus 116 ~~~~~--~~~~~~i~~~Gv~li~-~~~~~~--------------------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~ 172 (293)
T PRK10532 116 SRRPV--DFVWVVLAVLGLWFLL-PLGQDV--------------------SHVDLTGAALALGAGACWAIYILSGQRAGA 172 (293)
T ss_pred cCChH--HHHHHHHHHHHHheee-ecCCCc--------------------ccCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35554 4566788999998874 222111 112346999999999999999999999877
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhchHH
Q 026867 87 IYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLSI 166 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P 166 (231)
+.+ +... .+...++++++.++...... ...+ +...|..++++|+++++++|.+|++++++.++.+++.+.+++|
T Consensus 173 ~~~-~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~---~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~P 246 (293)
T PRK10532 173 EHG-PATV-AIGSLIAALIFVPIGALQAG-EALW---HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEP 246 (293)
T ss_pred cCC-chHH-HHHHHHHHHHHHHHHHHccC-cccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHH
Confidence 765 5555 45556677766666655322 1111 1245667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccccC
Q 026867 167 AIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEEG 208 (231)
Q Consensus 167 ~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~~ 208 (231)
+++.+++++++||++++.+++|+++|+.|++...+..+||.+
T Consensus 247 v~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 247 ALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999998888766554433
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.85 E-value=5.2e-21 Score=163.60 Aligned_cols=181 Identities=12% Similarity=0.104 Sum_probs=136.9
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+.+++|||+++++++|++++++|+.+.. ..+ ......|++++++|+++||.|.+..
T Consensus 109 ~~~~~~e~~~~~~~~~l~l~~~Gv~l~~---~~~---------------------~~~~~~G~~~~l~a~~~~a~~~v~~ 164 (302)
T TIGR00817 109 SAFFLGQEFPSTLWLSLLPIVGGVALAS---DTE---------------------LSFNWAGFLSAMISNITFVSRNIFS 164 (302)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhhhc---CCc---------------------ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999997653 111 1123469999999999999999999
Q ss_pred HHHHh--hcChhHHHHHHHHHHHHHHHHHHHHhhcCCcc---cccc-----cchhHHHHHHHHHhHHHHHHHHHHHHHhh
Q 026867 82 AHIIK--IYPAELVVVSLYLLCASIISVPACLMAEQDLS---AWRL-----KTDVALVSVVLSGFFGSSFSTLVHTWGLH 151 (231)
Q Consensus 82 ~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~-----~~~~~~~~l~~lgv~~~~i~~~~~~~~l~ 151 (231)
||..+ +.+ +...+.+++..+++.+.++....+.... .+.. .....+...++.+..+....+.+++++++
T Consensus 165 k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 243 (302)
T TIGR00817 165 KKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLG 243 (302)
T ss_pred HHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99877 555 8999999999999999888876543110 0100 00011111222232223333356668999
Q ss_pred cCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCcccc
Q 026867 152 LKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEE 207 (231)
Q Consensus 152 ~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~ 207 (231)
+.+|.+++.+.+++|++++++|++++||++++.+++|+++++.|+++..+.|++++
T Consensus 244 ~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 244 RVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred cCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999886655443
No 8
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.85 E-value=4.6e-20 Score=158.31 Aligned_cols=190 Identities=18% Similarity=0.223 Sum_probs=151.0
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+.+++|+|+++.|++|++++++|+.++...+....+ .+.+..+...|+++++.++++||++++..
T Consensus 123 S~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~---------------~~~~~~~~i~GDll~l~~a~lya~~nV~~ 187 (334)
T PF06027_consen 123 SFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGS---------------DSSSGSNPILGDLLALLGAILYAVSNVLE 187 (334)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccc---------------cCCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999988632211100 01234567899999999999999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCC-cccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeee
Q 026867 82 AHIIKIYPAELVVVSLYLLCASIISVPACLMAEQD-LSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAI 160 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~ 160 (231)
++..++.+ ...+..+.-+++.++..+...+.+.+ ......+ .....++....++..+-|.+....++..+|+...+
T Consensus 188 E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~--~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nL 264 (334)
T PF06027_consen 188 EKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT--SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNL 264 (334)
T ss_pred HHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeeh
Confidence 99998887 78888888899999988888776653 2222111 23333334344467788889999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccccCc
Q 026867 161 FKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEEGT 209 (231)
Q Consensus 161 ~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~~~ 209 (231)
-..+..+++++++++++|+++++..++|.++|++|+++.+..+++++++
T Consensus 265 sLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~ 313 (334)
T PF06027_consen 265 SLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA 313 (334)
T ss_pred HHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence 9999999999999999999999999999999999999988776655443
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.84 E-value=3.8e-20 Score=156.79 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=126.3
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+.+++|||+++++++|+.++++|+.++. . ++.. .....|..+++.++++|+.|.+..
T Consensus 107 ~~~~~~e~~~~~~~~g~~~~~~Gv~ll~-~--~~~~--------------------~~~~~g~~~~l~aal~~a~~~i~~ 163 (281)
T TIGR03340 107 ATLTLGETLSPLAWLGILIITLGLLVLG-L--SRFA--------------------QHRRKAYAWALAAALGTAIYSLSD 163 (281)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHh-c--cccc--------------------ccchhHHHHHHHHHHHHHHhhhhc
Confidence 4578999999999999999999999885 2 1111 112358889999999999999998
Q ss_pred HHHHhhcCh---hHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceee
Q 026867 82 AHIIKIYPA---ELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYI 158 (231)
Q Consensus 82 ~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~ 158 (231)
|+..++.++ ......+.+..++....+........ .+. .....+..+++.+.+.+.++|.+|++++++.+++++
T Consensus 164 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~ 240 (281)
T TIGR03340 164 KAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATV 240 (281)
T ss_pred cccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEE
Confidence 875443331 12223333333222222222111111 111 112356677889999999999999999999999999
Q ss_pred eehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhh
Q 026867 159 AIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYA 198 (231)
Q Consensus 159 s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l 198 (231)
+.+.+++|+++.++|++++||++++.+++|+++++.|+++
T Consensus 241 ~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 241 VALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred EeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999875
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.82 E-value=6.6e-20 Score=156.48 Aligned_cols=169 Identities=12% Similarity=0.151 Sum_probs=121.0
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+.+++|||+++++++|+.++++|++++. ..+ + .. .+++++++++||.|.+..
T Consensus 117 ~~~~l~E~~~~~~~~g~~l~~~Gv~li~-~~~---~--------------------~~----~~~~l~aa~~~a~~~i~~ 168 (296)
T PRK15430 117 GMIFLGERFRRMQWLAVILAICGVLVQL-WTF---G--------------------SL----PIIALGLAFSFAFYGLVR 168 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHc---C--------------------Cc----cHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999885 210 0 11 146888999999999999
Q ss_pred HHHHhhcC-hhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeee
Q 026867 82 AHIIKIYP-AELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAI 160 (231)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~ 160 (231)
|+..++.. .....+.+.+.++.+...+.. ......+...+...+..+.+.|+ .+.++|.+|++++++.++.+++.
T Consensus 169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~ 244 (296)
T PRK15430 169 KKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGF 244 (296)
T ss_pred HhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHH
Confidence 98643221 234444555555544332211 11111111111122334444555 68899999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 161 FKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 161 ~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
+.+++|+++.++|++++||++++.+++|+++|++|+.+....
T Consensus 245 ~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 245 FQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998777666443
No 11
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.75 E-value=5.3e-17 Score=136.72 Aligned_cols=170 Identities=21% Similarity=0.341 Sum_probs=132.2
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCc-hhhHHHHHHHHHHHHHHHHHHHH
Q 026867 4 LTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSN-WVTGGFLLIAQCLLNSIWYILQA 82 (231)
Q Consensus 4 ~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~l~~l~aa~~~a~~~v~~~ 82 (231)
+++|||+++++++++.++++|++++. . ++.. ..+ ...|+++++.++++||++.+..|
T Consensus 117 ~~~~e~~~~~~~~~~~~~~~Gv~lv~-~--~~~~-------------------~~~~~~~g~~~~l~a~~~~a~~~~~~~ 174 (292)
T COG0697 117 LLLGERLSLLQILGILLALAGVLLIL-L--GGGG-------------------GGILSLLGLLLALAAALLWALYTALVK 174 (292)
T ss_pred HHccCCCcHHHHHHHHHHHHhHHhee-c--CCCc-------------------chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999986 2 1111 011 46899999999999999999999
Q ss_pred HHHhhcChhHHHHH-HHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeeh
Q 026867 83 HIIKIYPAELVVVS-LYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIF 161 (231)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~ 161 (231)
+.. +.+ +..... +.+. + ........... ... . ......|..+.+.|++++.++|.+|++++++.++..++.+
T Consensus 175 ~~~-~~~-~~~~~~~~~~~-~-~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 247 (292)
T COG0697 175 RLS-RLG-PVTLALLLQLL-L-ALLLLLLFFLS-GFG-A-PILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALL 247 (292)
T ss_pred Hhc-CCC-hHHHHHHHHHH-H-HHHHHHHHHhc-ccc-c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 876 443 444444 4433 1 22212121111 111 1 1122579999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 162 KPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 162 ~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
.+++|+++.++++++++|+++..+++|+++++.|+.+...+
T Consensus 248 ~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 248 SLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998766
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.75 E-value=1.5e-17 Score=145.00 Aligned_cols=176 Identities=16% Similarity=0.136 Sum_probs=137.2
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+++++|||++++++++++++++|+.+.. . .+. .....|++++++|+++||++.+..
T Consensus 158 s~~~l~ek~s~~~~l~l~l~v~Gv~l~~-~--~~~---------------------~~~~~G~~~~l~s~~~~a~~~i~~ 213 (350)
T PTZ00343 158 SILFLKQFLNLYAYLSLIPIVGGVALAS-V--KEL---------------------HFTWLAFWCAMLSNLGSSLRSIFA 213 (350)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHhee-c--ccc---------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999885 2 111 123579999999999999999999
Q ss_pred HHHHhhcC------hhHHHHHHHHHHHHHHHHHHHHhhcCCc--cccc----ccchhHHHHHHHHHhHHHHHHHHHHHH-
Q 026867 82 AHIIKIYP------AELVVVSLYLLCASIISVPACLMAEQDL--SAWR----LKTDVALVSVVLSGFFGSSFSTLVHTW- 148 (231)
Q Consensus 82 ~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~lgv~~~~i~~~~~~~- 148 (231)
|+..++.+ ++.....++...++++++|+..+.+... ..+. ......+..+++ .++.+++.|++|+.
T Consensus 214 k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~ 292 (350)
T PTZ00343 214 KKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEV 292 (350)
T ss_pred HHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHH
Confidence 99876532 2445556667888888888877655311 1110 000012333444 45568999999995
Q ss_pred ---HhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 149 ---GLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 149 ---~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
++++.+|.+.+..+++.|+++++.|++++||++++.+++|+++++.|+++.++-
T Consensus 293 ~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 293 AFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999987643
No 13
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.64 E-value=1e-14 Score=106.35 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHH
Q 026867 63 GGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFS 142 (231)
Q Consensus 63 G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~ 142 (231)
..+++++++++|+...++.|.-.++.+ |...++.+.+...+.+........+ ...........|..+...|+ +++.+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~-~~~~~~~~~k~~lflilSGl-a~gls 80 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGN-WQAGGEIGPKSWLFLILSGL-AGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCc-eecccccCcceehhhhHHHH-HHHHH
Confidence 468999999999999999999888776 8888888888877777766666443 21111112357889999895 78999
Q ss_pred HHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhee
Q 026867 143 TLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 143 ~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~ 201 (231)
..+|++++|..+++++..+.-+.|+++++++++++||+++..+|+|+.+|++|.+++..
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999999999999999988764
No 14
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.64 E-value=1.1e-15 Score=113.05 Aligned_cols=125 Identities=22% Similarity=0.360 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhh
Q 026867 72 LLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLH 151 (231)
Q Consensus 72 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~ 151 (231)
++||.+.+..|+..++.+ +....++++..+++ +.+...+..... ....+...+..+++.+++++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 479999999999998876 99999999999988 666666654322 12222357888999999989999999999999
Q ss_pred cCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhe
Q 026867 152 LKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 152 ~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~ 200 (231)
+.++..++.+.+++|+++.++++++++|++++.+++|+++++.|++++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 15
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.58 E-value=1.5e-14 Score=123.13 Aligned_cols=173 Identities=17% Similarity=0.191 Sum_probs=126.7
Q ss_pred Ccccccccccchh----hhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAK----IIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIW 77 (231)
Q Consensus 2 ~~~~lkek~~~~~----~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~ 77 (231)
+.+++|||.++++ ++|+++.++|++++...++.+.. . ....+...|.+++++++++|+.|
T Consensus 104 ~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~---------------~-~~~~~~~~Gi~~~l~sg~~y~~~ 167 (290)
T TIGR00776 104 GVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAG---------------I-KSEFNFKKGILLLLMSTIGYLVY 167 (290)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccc---------------c-ccccchhhHHHHHHHHHHHHHHH
Confidence 3578999999999 99999999998777521110000 0 00023357999999999999999
Q ss_pred HHHHHHHHhhcChhHHHHHHHHH---HHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhh-cC
Q 026867 78 YILQAHIIKIYPAELVVVSLYLL---CASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLH-LK 153 (231)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~-~~ 153 (231)
.+..|+. +++ +....+.++. +++.+..+.. .. . .++ .+ ..+...+..|++ ..++|.+|+.+.+ +.
T Consensus 168 ~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~~-~-~~~--~~-~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~ 236 (290)
T TIGR00776 168 VVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--IL-A-KPL--KK-YAILLNILPGLM-WGIGNFFYLFSAQPKV 236 (290)
T ss_pred HHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH--hc-c-cch--HH-HHHHHHHHHHHH-HHHHHHHHHHHccccc
Confidence 9999975 354 7777544433 3333222211 00 0 111 12 233344448888 7999999999999 99
Q ss_pred CceeeeehhchHHHHHHHHHHHHhCCCchhhhH----HHHHHHHHHhhhhee
Q 026867 154 GPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSV----IGAIIICIGFYAVLW 201 (231)
Q Consensus 154 ~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~i----lG~~lii~Gv~l~~~ 201 (231)
+++.++.+.+.+|+.+.+++++++||+.++.++ +|.++++.|+.+...
T Consensus 237 ~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 237 GVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 999999999887643
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.58 E-value=1.8e-14 Score=120.42 Aligned_cols=142 Identities=10% Similarity=0.071 Sum_probs=97.7
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+.+++|||++++++++++++++|++++. ..+ ... .++++.++++||.|.+..
T Consensus 114 a~~~l~Ek~~~~~~l~~~~~~~Gv~li~-~~~-----------------------~~~----~~~~l~aa~~~a~~~i~~ 165 (256)
T TIGR00688 114 GRVFLKERISRFQFIAVIIATLGVISNI-VLK-----------------------GSL----PWEALVLAFSFTAYGLIR 165 (256)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHc-----------------------CCc----hHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999998885 210 011 135788999999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeeh
Q 026867 82 AHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIF 161 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~ 161 (231)
|+..++ + ........ ....+...+.... .........++...|.+++++|++ +.++|.+|++++|+.++++++.+
T Consensus 166 ~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~ 240 (256)
T TIGR00688 166 KALKNT-D-LAGFCLET-LSLMPVAIYYLLQ-TDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLL 240 (256)
T ss_pred hhcCCC-C-cchHHHHH-HHHHHHHHHHHHH-hccCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHH
Confidence 986443 2 22221111 1111122111111 111111111122478899999986 88999999999999999999999
Q ss_pred hchHHHHHHHHHHHH
Q 026867 162 KPLSIAIAAIMGVVF 176 (231)
Q Consensus 162 ~~~~P~~a~i~~~~~ 176 (231)
.|++|+++++++++.
T Consensus 241 ~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 241 QYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999864
No 17
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.57 E-value=6.9e-14 Score=113.29 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=133.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 026867 11 TQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQAHIIKIYPA 90 (231)
Q Consensus 11 ~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~ 90 (231)
+.++.+-+.+++.|+.++. -.+++. ......|..+++.++.||+.|.+..+|..+..+
T Consensus 118 r~~d~vwvaLAvlGi~lL~-p~~~~~--------------------~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~- 175 (292)
T COG5006 118 RLRDFVWVALAVLGIWLLL-PLGQSV--------------------WSLDPVGVALALGAGACWALYIVLGQRAGRAEH- 175 (292)
T ss_pred chhhHHHHHHHHHHHHhhe-eccCCc--------------------CcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-
Confidence 4456777888999988885 222221 234468999999999999999999999876555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhchHHHHHH
Q 026867 91 ELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAA 170 (231)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~ 170 (231)
.-.-+...+..++++..|+..-..+ ..-+.+ .-...-+..+++++.+.|.+=..++++.++...+.+.+++|.++.
T Consensus 176 g~~g~a~gm~vAaviv~Pig~~~ag-~~l~~p---~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aA 251 (292)
T COG5006 176 GTAGVAVGMLVAALIVLPIGAAQAG-PALFSP---SLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAA 251 (292)
T ss_pred CchHHHHHHHHHHHHHhhhhhhhcc-hhhcCh---HHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHH
Confidence 5667777888899988888875322 111111 345666778999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchhhhHHHHHHHHHHhhhheecCcc
Q 026867 171 IMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 171 i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~ 205 (231)
+.|++++||++++.||+|++.|+.+..=.....||
T Consensus 252 l~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 252 LSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 99999999999999999999999877655444443
No 18
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.55 E-value=1.2e-14 Score=123.51 Aligned_cols=187 Identities=20% Similarity=0.281 Sum_probs=139.7
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 026867 4 LTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQAH 83 (231)
Q Consensus 4 ~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~~ 83 (231)
.+..||+++.|++++++++.|++++++.+...-+ +........|.++++++|+.||+|.++.||
T Consensus 205 if~~e~ft~sKllav~~si~GViiVt~~~s~~~~----------------~~~a~~~llG~llaL~sA~~YavY~vllk~ 268 (416)
T KOG2765|consen 205 IFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNS----------------DLPASRPLLGNLLALLSALLYAVYTVLLKR 268 (416)
T ss_pred HcCcchhhHHHHHHHHHhhccEEEEEeccccccc----------------cCCccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557999999999999999999999743211100 112345678999999999999999999999
Q ss_pred HHhhcChhHHHHH---HHHHHHHHHHHHHHHhhcC-CcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeee
Q 026867 84 IIKIYPAELVVVS---LYLLCASIISVPACLMAEQ-DLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIA 159 (231)
Q Consensus 84 ~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s 159 (231)
...+......+.. +--++..+++.|..++... ..+.++.++..+...++..++++++++-++|.++.-..+|..+.
T Consensus 269 ~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~T 348 (416)
T KOG2765|consen 269 KIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVT 348 (416)
T ss_pred hcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhhe
Confidence 7665521222222 1222222333322222211 23344555556777888899999999999999999999999999
Q ss_pred ehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccc
Q 026867 160 IFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANE 206 (231)
Q Consensus 160 ~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~ 206 (231)
+-..++.+.+++.+.++-|.++++.+++|.+.|++|.+++++..+..
T Consensus 349 lgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 349 LGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred eeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence 99999999999999999999999999999999999999998765543
No 19
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.54 E-value=2e-13 Score=117.00 Aligned_cols=190 Identities=15% Similarity=0.188 Sum_probs=145.1
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+.+++|+|.+++|++++++..+|+++..+.+..+.. ........+..|+++.+++.++-|...+.+
T Consensus 108 ~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~--------------~~~~~~~~~~~G~~ll~~sl~~~a~~~~~q 173 (303)
T PF08449_consen 108 GVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS--------------SSNSSSFSSALGIILLLLSLLLDAFTGVYQ 173 (303)
T ss_pred HHHhcCccccHHHHHHHHHHHhhHheeeeccccccc--------------ccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999988632211111 000111223349999999999999999999
Q ss_pred HHHHhhcC-hhHHHHHHHHHHHHHHHHHHHHh--hcCCccccc--ccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Q 026867 82 AHIIKIYP-AELVVVSLYLLCASIISVPACLM--AEQDLSAWR--LKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPV 156 (231)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~--~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~ 156 (231)
++..++++ ++...+++...++.+...+.... .......++ ......+..++...+ .+.+++...++..++.+|.
T Consensus 174 e~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al 252 (303)
T PF08449_consen 174 EKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSAL 252 (303)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCch
Confidence 99987664 46888899999888888777776 222111111 111123444444444 5778888889999999999
Q ss_pred eeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccc
Q 026867 157 YIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANE 206 (231)
Q Consensus 157 ~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~ 206 (231)
..+.+..+--+.+++++++++++++++.+|+|.++++.|..+....++|+
T Consensus 253 ~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 253 TTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999988777765
No 20
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.52 E-value=2.9e-13 Score=112.11 Aligned_cols=170 Identities=12% Similarity=0.177 Sum_probs=132.7
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+++++|||+|+.|++++.++.+|+...+...|. . . ...+.=+++|+.|....
T Consensus 116 G~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~-----------------------l-p----wval~la~sf~~Ygl~R 167 (293)
T COG2962 116 GRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS-----------------------L-P----WVALALALSFGLYGLLR 167 (293)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC-----------------------C-c----HHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999988742221 1 1 45566678999999988
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeeh
Q 026867 82 AHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIF 161 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~ 161 (231)
|+. +.+ +.+-.+.-+..-.+......++.+....-....+...+..+...|. .|+++..+|..+-|+++-+..+.+
T Consensus 168 K~~--~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~l 243 (293)
T COG2962 168 KKL--KVD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFL 243 (293)
T ss_pred Hhc--CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHH
Confidence 774 344 5666666666666666666655433221011122256888888888 588999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecC
Q 026867 162 KPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGK 203 (231)
Q Consensus 162 ~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~ 203 (231)
+|.+|..-.+++++++||+++..+++..++|-.|+.+...+.
T Consensus 244 qYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 244 QYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876544
No 21
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.51 E-value=1.9e-15 Score=123.19 Aligned_cols=186 Identities=21% Similarity=0.275 Sum_probs=138.1
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
.++++|||.+....+|..+.+.|+++++ .|.+-+.. +++++ ..+..+....|...++.+++..|..+++.
T Consensus 141 aw~~LkE~~t~~eaL~s~itl~GVVLIv---RPpFlFG~--~t~g~-----~~s~~~~~~~gt~aai~s~lf~asvyIil 210 (346)
T KOG4510|consen 141 AWAFLKEPFTKFEALGSLITLLGVVLIV---RPPFLFGD--TTEGE-----DSSQVEYDIPGTVAAISSVLFGASVYIIL 210 (346)
T ss_pred HHHHHcCCCcHHHHHHHHHhhheEEEEe---cCCcccCC--Ccccc-----ccccccccCCchHHHHHhHhhhhhHHHHH
Confidence 4678999999999999999999999986 34433221 11111 01112344568999999999999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCccccccc-chhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeee
Q 026867 82 AHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLK-TDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAI 160 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~ 160 (231)
|+..|+.+ ....+.+..+++.+...+...... .+..+ ...+|+.+..+|++ +.+++.+...++|+-.+..+++
T Consensus 211 R~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvai 284 (346)
T KOG4510|consen 211 RYIGKNAH-AIMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAI 284 (346)
T ss_pred HHhhcccc-EEEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeeh
Confidence 99867654 344444444555555444333211 22222 23578888999996 5799999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecC
Q 026867 161 FKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGK 203 (231)
Q Consensus 161 ~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~ 203 (231)
+.+++.++|.+|.+++|||.++++.|.|+++++.+.+.+..+|
T Consensus 285 m~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 285 MTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred hhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 9999999999999999999999999999999998766665443
No 22
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.8e-12 Score=104.18 Aligned_cols=186 Identities=13% Similarity=0.136 Sum_probs=147.4
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+.++.|++.+++|...++..++|+++. +++.+-... ..+.+...|.++.+++-.+-+.....+
T Consensus 129 GVl~~~KsY~w~kY~cVL~IV~GValF-mYK~~Kv~g----------------~e~~t~g~GElLL~lSL~mDGlTg~~Q 191 (337)
T KOG1580|consen 129 GVLFAHKSYHWRKYCCVLMIVVGVALF-MYKENKVGG----------------AEDKTFGFGELLLILSLAMDGLTGSIQ 191 (337)
T ss_pred ehhhhcccccHHHHHHHHHHHHHHHHh-hccccccCC----------------CcccccchHHHHHHHHHHhcccchhHH
Confidence 457789999999999999999999999 476333221 123567789999999999999999999
Q ss_pred HHHHhhcC-hhHHHHHHHHHHHHHHHHHHHHhhcC--CcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceee
Q 026867 82 AHIIKIYP-AELVVVSLYLLCASIISVPACLMAEQ--DLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYI 158 (231)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~ 158 (231)
.+..+++. ....++++..+.+++.+..-..+... .+..+.......|+.+..+++ ++++++++.+......+|...
T Consensus 192 drira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtC 270 (337)
T KOG1580|consen 192 DRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTC 270 (337)
T ss_pred HHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeE
Confidence 98776653 35677777777777777666665432 122222222245777777777 789999999999999999999
Q ss_pred eehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCcc
Q 026867 159 AIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 159 s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~ 205 (231)
+++..+.-+++++.++++++.+++.+||+|.++++.++..-....++
T Consensus 271 SivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 271 SIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred EEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 99999999999999999999999999999999999998886555443
No 23
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.37 E-value=5.7e-14 Score=113.93 Aligned_cols=185 Identities=18% Similarity=0.156 Sum_probs=143.5
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+++++|.|.++.|+.|+.+|++|+.+++ +.+-. +.++.+..+...|+++.+.+|.+||+.++..
T Consensus 122 sw~fLktrYrlmki~gV~iCi~GvvmvV-~sDV~---------------agd~aggsnp~~GD~lvi~GATlYaVSNv~E 185 (336)
T KOG2766|consen 122 SWFFLKTRYRLMKISGVVICIVGVVMVV-FSDVH---------------AGDRAGGSNPVKGDFLVIAGATLYAVSNVSE 185 (336)
T ss_pred HHHHHHHHHhhheeeeEEeEecceEEEE-Eeeec---------------cccccCCCCCccCcEEEEecceeeeeccccH
Confidence 5789999999999999999999999986 32111 1122345677889999999999999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcC-CcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeee
Q 026867 82 AHIIKIYPAELVVVSLYLLCASIISVPACLMAEQ-DLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAI 160 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~ 160 (231)
..+.++.+ ....+....++|+++..+-..+ +. +.... .++......+. ...+..+-|.+.-..+|..+++...+
T Consensus 186 Eflvkn~d-~~elm~~lgLfGaIIsaIQ~i~-~~~~~~tl--~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nl 260 (336)
T KOG2766|consen 186 EFLVKNAD-RVELMGFLGLFGAIISAIQFIF-ERHHVSTL--HWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNL 260 (336)
T ss_pred HHHHhcCc-HHHHHHHHHHHHHHHHHHHHhh-hccceeeE--eehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEh
Confidence 99888887 8888888899999999888444 43 22111 11122232222 44567777888888999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccccCc
Q 026867 161 FKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEEGT 209 (231)
Q Consensus 161 ~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~~~ 209 (231)
-..+...|++++ ..||-+++|..++..+.+..|+++...+++.+++.
T Consensus 261 slLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~e~ 307 (336)
T KOG2766|consen 261 SLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDEEEL 307 (336)
T ss_pred hHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCcHhh
Confidence 999999999998 67888899999999999999999987666654443
No 24
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.33 E-value=2.8e-11 Score=103.33 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=110.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCccccc--ccchhHHHHHHHHHh
Q 026867 59 NWVTGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWR--LKTDVALVSVVLSGF 136 (231)
Q Consensus 59 ~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~lgv 136 (231)
+...|.+++++++++|+...+..|.. .+.+ +....++++.++.+++.+......+ ..... ......+ .....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKI-FMLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHH-HHHHHHH
Confidence 44579999999999999999999764 5565 8999999999998877666554321 11100 0011222 3344666
Q ss_pred HHHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhe
Q 026867 137 FGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 137 ~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~ 200 (231)
+...+.+.++++++++.++..++.+.++.|++..++++++++|+++..+++|.++.++|+.++.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999999999999999988875
No 25
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.29 E-value=9.1e-11 Score=99.42 Aligned_cols=134 Identities=17% Similarity=0.194 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHH
Q 026867 64 GFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFST 143 (231)
Q Consensus 64 ~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~ 143 (231)
.++.+.++++||...+..|+..++.+ +. ..+.+..+++++.++..... ....|+... ..+..++..+.+.....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYL-AQVGWSRLP-ATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhc-ccCCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence 46788999999999999997766643 33 35555556666656554421 112233222 334445555666788999
Q ss_pred HHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 144 LVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 144 ~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
.++++++++.+++.++.+.++.|+++.+++++++||+++..+++|.++++.|+.++...
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999887643
No 26
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.29 E-value=5.4e-11 Score=99.37 Aligned_cols=136 Identities=14% Similarity=0.226 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCc---cccccc-chhHHHHHHHHHhH
Q 026867 62 TGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDL---SAWRLK-TDVALVSVVLSGFF 137 (231)
Q Consensus 62 ~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~~~~l~~lgv~ 137 (231)
.|.++.++++++|+...+..|. ..+.+ +....+++++++++++.+......+.. ..++.. ....+..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4889999999999999999997 44565 999999999999888766654432110 111111 11123345555654
Q ss_pred HHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhe
Q 026867 138 GSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 138 ~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~ 200 (231)
..+.+.++++++++.++..++.+.++.|+++.++++++++|+++..+++|.++.+.|+.++.
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999988764
No 27
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.18 E-value=5.9e-10 Score=83.47 Aligned_cols=123 Identities=19% Similarity=0.190 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHH
Q 026867 62 TGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSF 141 (231)
Q Consensus 62 ~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i 141 (231)
.|.++.+.+.++-+...++-|+-.++.+ ....... . . ....... .....+++|+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~--~---~-~~~~~~~--------------~p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD--F---I-AALLAFG--------------LALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH--H---H-HHHHHHh--------------ccHHHHHHHHHHHHH
Confidence 3778889999999999999998877765 2221111 0 0 0000100 011247788999999
Q ss_pred HHHHHHHHhhcCCceeeeehhchHHHHHHHHHHH--HhCCCchhhhHHHHHHHHHHhhhheecCcc
Q 026867 142 STLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVV--FLGDTLHLGSVIGAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 142 ~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~--~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~ 205 (231)
++.+|.+++++.+++.+..+....+....+.++. ++||++++.+++|+++|++|++++.+.+++
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999998888888885 899999999999999999999998865553
No 28
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.15 E-value=7.3e-10 Score=96.91 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHH
Q 026867 63 GGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFS 142 (231)
Q Consensus 63 G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~ 142 (231)
-.+.++..-++++.+.++.|...+..-++....++++.++++++.++++..++.. .++......|..+..+|+++ .+.
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~~~ 91 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-SMY 91 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-HHH
Confidence 4577888889999999999999887767899999999999999988887654311 11111124577788888877 566
Q ss_pred HHHHHHHhhcCCceeeeehhchHHHHHHHHHHHH------hCCCchhhhHHHHHHHHHHhhhheec
Q 026867 143 TLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVF------LGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 143 ~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~------~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
+.++++++++.+++.++++.++.|++..++++++ ++|+++..+++|.++-++|+.++..+
T Consensus 92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 7789999999999999999999999999999999 69999999999999999999887643
No 29
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.10 E-value=2.7e-09 Score=90.95 Aligned_cols=132 Identities=15% Similarity=0.084 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHH
Q 026867 64 GFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFST 143 (231)
Q Consensus 64 ~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~ 143 (231)
.+..+...+.|+...+..|...++.+ |...+++++.++++++.++........ .+...|.....+|.+...+.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHPL-----PTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CcHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999998777666 999999999999988877765532211 112457777788887777888
Q ss_pred HHHHHHh-hcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 144 LVHTWGL-HLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 144 ~~~~~~l-~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
.+++.+. ++.++..++.+.++.|++..+++++ +||+++..+++|.++.++|+.+....
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 8999999 9999999999999999999999986 79999999999999999999887643
No 30
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.07 E-value=4.5e-09 Score=80.71 Aligned_cols=137 Identities=17% Similarity=0.250 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------cChhHHHHHHHHHHHHHHHHHHHHhhcCCccc-----ccc---c-chhH
Q 026867 63 GGFLLIAQCLLNSIWYILQAHIIKI------YPAELVVVSLYLLCASIISVPACLMAEQDLSA-----WRL---K-TDVA 127 (231)
Q Consensus 63 G~l~~l~aa~~~a~~~v~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~---~-~~~~ 127 (231)
|.++++.|.++.|++.++.|+..++ ..++.....+....+.+.+.+.+.+.+..... ... . ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999998766 23589999999999999999988887653211 000 0 1133
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhe
Q 026867 128 LVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 128 ~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~ 200 (231)
+..++..|+ ....-....+..+++.+|...+....+-.+...+.++++++|++++.+++|.++.+.|+++.+
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 555555555 456778888999999999999999999999999999999999999999999999999988754
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.05 E-value=2.9e-09 Score=88.80 Aligned_cols=120 Identities=10% Similarity=-0.019 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcC
Q 026867 74 NSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLK 153 (231)
Q Consensus 74 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~ 153 (231)
|+...+..|...++..++....++++..+.+.+.+..... .+...+..++..|.++..+.+.++++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566667777665554588889999888877776654431 1124577788888888899999999999999
Q ss_pred CceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 154 GPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 154 ~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
++..++.+..++|+++.+++.++++|++++.+++|..+.+.|+.++...
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD 120 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence 9999999999999999999999999999999999999999999887643
No 32
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.98 E-value=1.4e-08 Score=86.85 Aligned_cols=126 Identities=10% Similarity=0.103 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHH
Q 026867 65 FLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTL 144 (231)
Q Consensus 65 l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~ 144 (231)
++.++++++|+...+..|...++.+ |..+.++++.++++.+.++.. .+ .. .+..++..|+......+.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~--~~---~~------~~~~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA--RP---KV------PLNLLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc--CC---CC------chHHHHHHHHHHHHHHHH
Confidence 6688999999999999998887776 999999999987765544321 11 11 122334445544455666
Q ss_pred HHHHHhhc-CCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 145 VHTWGLHL-KGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 145 ~~~~~l~~-~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
+++.++++ .++..++.+.++.|++..++++++++|+++..+++|.++.++|+.++...
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 77888887 57889999999999999999999999999999999999999999888743
No 33
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.97 E-value=3.7e-09 Score=77.51 Aligned_cols=107 Identities=17% Similarity=0.298 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHH
Q 026867 97 LYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVF 176 (231)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~ 176 (231)
+++.++.+.+........+....++......+.+.+..|++....++.+|++++++.++ .++....+.|+++.+++.++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 45566666665555553321111111111346666777777777899999999999995 88899999999999999999
Q ss_pred hCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 177 LGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 177 ~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
++|++++.+++|.+++++|+.++.+..-
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999876543
No 34
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.93 E-value=3.4e-08 Score=84.30 Aligned_cols=131 Identities=13% Similarity=0.092 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHH
Q 026867 62 TGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSF 141 (231)
Q Consensus 62 ~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i 141 (231)
.+.++++.++++|+...+..|...++.+ |....++++..+++++.++.. ....+. ..+.. +..+.+....
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~-----~~~~~~---~~~~~-~~~~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG-----FPRLRQ---FPKRY-LLAGGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc-----cccccc---ccHHH-HHHHhHHHHH
Confidence 3678899999999999999999888887 999999999999888765421 111111 11222 2334434445
Q ss_pred HHHHHHHHhh----cCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 142 STLVHTWGLH----LKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 142 ~~~~~~~~l~----~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
.+.+++.+++ ..++..++.+.++.|++..++++++++|++++.+++|.++.++|+.++...
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 5555666664 467788889999999999999999999999999999999999999888754
No 35
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.93 E-value=7.7e-08 Score=82.15 Aligned_cols=189 Identities=12% Similarity=0.120 Sum_probs=128.0
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 026867 3 KLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQA 82 (231)
Q Consensus 3 ~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~ 82 (231)
.+++|+|++++||.++.+-++|+.++- ....+.. ++...+...+.+.|....+.+++.=++-.+...
T Consensus 137 vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ-~~~~~~~------------~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfE 203 (345)
T KOG2234|consen 137 VLILRRKLSRLQWMALVLLFAGVALVQ-LPSLSPT------------GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFE 203 (345)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHh-ccCCCCC------------CccCCCcccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998874 1111000 000012345678899999999999999999988
Q ss_pred HHHhhcCh-hHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeeh
Q 026867 83 HIIKIYPA-ELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIF 161 (231)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~ 161 (231)
+..|+... .+..+.-..++|.++.....+........|.-. -..|-...++-++..+++=.+....+|+.+-..=+..
T Consensus 204 kiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gf-f~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~ 282 (345)
T KOG2234|consen 204 KILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGF-FYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFS 282 (345)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCc-cccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHH
Confidence 88866542 445555556666666655554432211111110 0222233333333444444566667788887777777
Q ss_pred hchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCcc
Q 026867 162 KPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 162 ~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~ 205 (231)
..+..+++.+.++.+++-+++....+|+.+++.++.+....+++
T Consensus 283 ~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 283 TSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 88889999999999999999999999999999999998844443
No 36
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.88 E-value=5.6e-09 Score=87.09 Aligned_cols=188 Identities=14% Similarity=0.169 Sum_probs=145.8
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+.++.|.|.+.++.+...+.-.|+.+..+++..+. ...++..+...|.+++...-+.-+.-+..+
T Consensus 127 g~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s---------------~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQ 191 (327)
T KOG1581|consen 127 GTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDS---------------SSKSGRENSPIGILLLFGYLLFDGFTNATQ 191 (327)
T ss_pred HHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCC---------------ccccCCCCchHhHHHHHHHHHHHhhHHhHH
Confidence 45677999999999999999999988864432220 011334567889999999999999999999
Q ss_pred HHHHhhcC-hhHHHHHHHHHHHHHHHHHHHHhhcCCccc--ccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceee
Q 026867 82 AHIIKIYP-AELVVVSLYLLCASIISVPACLMAEQDLSA--WRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYI 158 (231)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~ 158 (231)
.++.++.. +...+++...++.++............... +-....+.++.++.+.. ++++++.+.++-+++.|+...
T Consensus 192 d~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~ 270 (327)
T KOG1581|consen 192 DSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFGSLTF 270 (327)
T ss_pred HHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcccHHH
Confidence 99887653 478999999998888886664332221111 11111245777777777 567999999999999999999
Q ss_pred eehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCcc
Q 026867 159 AIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 159 s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~ 205 (231)
+.++.+--.++++++.+.+|.++++.||+|..+++.|+.+-...+++
T Consensus 271 t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 271 TTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998886554444
No 37
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.87 E-value=3e-08 Score=82.33 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=123.2
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
..+++|+|++++||+++.+-++|+.++- ..+...... .+...........+...|.++.++++++-++..+..
T Consensus 61 s~~~L~r~ls~~qW~aL~lL~~Gv~lv~-~~~~~~~~~------~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~ 133 (244)
T PF04142_consen 61 SVLLLKRRLSRRQWLALFLLVAGVVLVQ-LSSSQSSDN------SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYF 133 (244)
T ss_pred HHHHHHcccchhhHHHHHHHHHHHheee-cCCcccccc------ccccccccccccchhHhHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999998875 211111000 000000000123456789999999999999999999
Q ss_pred HHHHhhcC-hhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeee
Q 026867 82 AHIIKIYP-AELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAI 160 (231)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~ 160 (231)
.|..|+.. +....+.....++.++.++...+.+..... +...-+.|-...+..++...++=.+....+|+.+...=+.
T Consensus 134 E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~-~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~f 212 (244)
T PF04142_consen 134 EKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAIS-ESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGF 212 (244)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccc-cCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Confidence 88887764 345566666666666665554443221110 0000122333344444455666677788899999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCchhhhHHHHHHH
Q 026867 161 FKPLSIAIAAIMGVVFLGDTLHLGSVIGAIII 192 (231)
Q Consensus 161 ~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~li 192 (231)
...+.-+.+.+.++++++.+++....+|+.++
T Consensus 213 a~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 213 ATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 99999999999999999999999999998753
No 38
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.80 E-value=3.7e-08 Score=71.97 Aligned_cols=66 Identities=9% Similarity=-0.004 Sum_probs=61.6
Q ss_pred HhHHHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhe
Q 026867 135 GFFGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 135 gv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~ 200 (231)
++++..+++.+|.+++++.+.+.+..+.++.++++.++|++++||++++.+++|.+++++|++++.
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999999999999999999999999998764
No 39
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.78 E-value=3.3e-07 Score=80.14 Aligned_cols=125 Identities=13% Similarity=0.167 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Q 026867 75 SIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKG 154 (231)
Q Consensus 75 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~ 154 (231)
..+.+..|...+..+.|+..+.++++++.+++.++........+... .....|..++.+|++... .+...+.++++.+
T Consensus 62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~-~~~~~~~sl~~~s 139 (350)
T PTZ00343 62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLF-VHFGAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc
Confidence 44566677767777658999999999998776544322111111111 012357778888887654 5777889999999
Q ss_pred ceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhee
Q 026867 155 PVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 155 ~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~ 201 (231)
++.+.++..++|++.+++++++++|+++..++++.+++++|+.+...
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 99999999999999999999999999999999999999999999764
No 40
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.76 E-value=1.9e-07 Score=79.81 Aligned_cols=120 Identities=10% Similarity=0.155 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Q 026867 77 WYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPV 156 (231)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~ 156 (231)
++++.|...++.+.|...+++++.++.+.+.+......... .+ .+..+|..++..|++ .+..+.+.++++++.+++
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~s 92 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKR--LK-ISSALLKLLLPVAIV-HTIGHVTSNVSLSKVAVS 92 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCC--CC-CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccHH
Confidence 44566777776566999999999988776655411111111 11 123578888888987 478889999999999999
Q ss_pred eeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhe
Q 026867 157 YIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 157 ~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~ 200 (231)
..+++..+.|++..++++++++|+++..+++|.+++++|+.+..
T Consensus 93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999998754
No 41
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.70 E-value=1.1e-07 Score=77.88 Aligned_cols=187 Identities=15% Similarity=0.108 Sum_probs=113.4
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcc-----------cccCCCCCCCCCCCccccccCCchhhHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAM-----------FLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQ 70 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~a 70 (231)
+...+++|.+..|+++..+...|++...+.+.+.. ...++++ +......+...|....+.+
T Consensus 22 ~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~--------~~~~~~g~~~~g~~~~l~a 93 (222)
T TIGR00803 22 NLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSS--------AKTLMFGNPVVGLSAVLSA 93 (222)
T ss_pred cccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCC--------ccccccccHHHHHHHHHHH
Confidence 45577999999999999999999876443221110 0000000 0001113456777777777
Q ss_pred HHHHHHHHHHHHHHHhhcChh-HHHHHHHHHHHHHHHHHHHHhhcCCc-ccccccchhHHHHHHHHHhHHHHHHHHHHHH
Q 026867 71 CLLNSIWYILQAHIIKIYPAE-LVVVSLYLLCASIISVPACLMAEQDL-SAWRLKTDVALVSVVLSGFFGSSFSTLVHTW 148 (231)
Q Consensus 71 a~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~ 148 (231)
+++-+...+.+.+..++.... +..+.....++.+............. ..+... ..+....+.-++...++..+..+
T Consensus 94 ~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~v~~ 171 (222)
T TIGR00803 94 LLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFF--IGYPTAVWIVGLLNVGGGLCIGG 171 (222)
T ss_pred HHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcc--cCCchHHHHHHHHHHhcCceeee
Confidence 777777777777765543211 11122222222222122111111111 111100 01111112222346678888999
Q ss_pred HhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhh
Q 026867 149 GLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYA 198 (231)
Q Consensus 149 ~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l 198 (231)
.+|+.++...+....+.++.+.+++++++||+++..+++|+.+++.|+++
T Consensus 172 vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 172 VVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 99999999999999999999999999999999999999999999988764
No 42
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.66 E-value=1.1e-06 Score=73.78 Aligned_cols=142 Identities=19% Similarity=0.283 Sum_probs=106.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHH
Q 026867 60 WVTGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGS 139 (231)
Q Consensus 60 ~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~ 139 (231)
...+....+..++.|+......+.............+.++..+.+...+.... .. ....+.. ..+......+.+..
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~~~~ 80 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EP-RGLRPAL--RPWLLLLLLALLGL 80 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hc-ccccccc--cchHHHHHHHHHHH
Confidence 34577888888899999999998876653324555555666666653222221 11 0011111 12556677788889
Q ss_pred HHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHH-HHhCCCchhhhHHHHHHHHHHhhhheecCcc
Q 026867 140 SFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGV-VFLGDTLHLGSVIGAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 140 ~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~-~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~ 205 (231)
...+.+|+.++++.++..++.+.++.|++..++++ ++++|++++.+++|..+.+.|+.++......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 99999999999999999999999999999999997 6679999999999999999999998876554
No 43
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.62 E-value=6.1e-07 Score=76.47 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHH
Q 026867 63 GGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFS 142 (231)
Q Consensus 63 G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~ 142 (231)
|.+++++++++|+...+..|+.. ..+ +.... ...++..+.......... + ... ....+..-+..|+ .-.++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~-~~~--~~~~~~~g~l~G~-~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVL-P-EFW--ALSIFLVGLLSGA-FWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhC-C-ccc--ccHHHHHHHHHHH-HHHhh
Confidence 57899999999999999999864 333 33332 345555555444443221 1 111 0123333333344 36788
Q ss_pred HHHHHHHhhcCCceeeeehhc-hHHHHHHHHHHHHhCCCchhhh----HHHHHHHHHHhhhheecC
Q 026867 143 TLVHTWGLHLKGPVYIAIFKP-LSIAIAAIMGVVFLGDTLHLGS----VIGAIIICIGFYAVLWGK 203 (231)
Q Consensus 143 ~~~~~~~l~~~~~~~~s~~~~-~~P~~a~i~~~~~~gE~~~~~~----ilG~~lii~Gv~l~~~~~ 203 (231)
+.+|+.++|+.+.+.+..+.+ ++++++.+++.+++||+.+..+ ++|.++++.|++++...+
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 999999999999999999988 8999999999999999999998 999999999999886554
No 44
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.61 E-value=6.1e-07 Score=74.06 Aligned_cols=183 Identities=14% Similarity=0.178 Sum_probs=141.2
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 026867 3 KLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQA 82 (231)
Q Consensus 3 ~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~ 82 (231)
.++=+.|....+.++..+-.+|.++.++.+.+.. ..-...|+.+.-.|-++-|.-..++.
T Consensus 151 ifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s--------------------PNF~~~Gv~mIsgALl~DA~iGNvQE 210 (367)
T KOG1582|consen 151 IFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS--------------------PNFNLIGVMMISGALLADAVIGNVQE 210 (367)
T ss_pred eeeccccccHHHHHHHHHHHHHHHhhhhcccccC--------------------CCcceeeHHHHHHHHHHHHHhhHHHH
Confidence 3455678999999999999999999985332111 12235688888888888899888888
Q ss_pred HHHhhcCh-hHHHHHHHHHHHHHHHHHHHHhhcCCccccc---ccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceee
Q 026867 83 HIIKIYPA-ELVVVSLYLLCASIISVPACLMAEQDLSAWR---LKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYI 158 (231)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~ 158 (231)
+..+..+. ...+.+++..+|.+.+...+.....-++.|+ ..+....++.++.+. .+.++...-...++..|+..+
T Consensus 211 k~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~a 289 (367)
T KOG1582|consen 211 KAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIA 289 (367)
T ss_pred HHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHH
Confidence 88877652 4677888888888888777776554344443 222245566666655 567788888888899999999
Q ss_pred eehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccc
Q 026867 159 AIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANE 206 (231)
Q Consensus 159 s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~ 206 (231)
+.+...--..++++++++|..+++....-|..+++.|+++..+.++.+
T Consensus 290 atvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk 337 (367)
T KOG1582|consen 290 ATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNK 337 (367)
T ss_pred HHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCC
Confidence 999999999999999999999999999999999999999988777543
No 45
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.58 E-value=9.6e-07 Score=74.00 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=120.1
Q ss_pred ccc-ccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 026867 5 TLR-SRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQAH 83 (231)
Q Consensus 5 ~lk-ek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~~ 83 (231)
+|| ||+++.-..-+++..+|+.+.+ ++... -...|..+...|.++-++-..+.++
T Consensus 130 if~lEk~~w~L~l~v~lI~~Glflft-~KsTq-----------------------f~i~Gf~lv~~aS~~sGlRW~~tQ~ 185 (349)
T KOG1443|consen 130 IFKLEKFRWALVLIVLLIAVGLFLFT-YKSTQ-----------------------FNIEGFFLVLAASLLSGLRWAFTQM 185 (349)
T ss_pred HHHhHHHHHHHHHHHHHHhhheeEEE-ecccc-----------------------eeehhHHHHHHHHHhhhhhHHHHHH
Confidence 455 9999998888888888888876 43322 2356888888888887777777777
Q ss_pred HHhhcC----hhHHHHHHHHHHHHHHHHHHHHhhcCCcc-----ccccc-chhHHHHHHHHHhHHHHHHH---HHHHHHh
Q 026867 84 IIKIYP----AELVVVSLYLLCASIISVPACLMAEQDLS-----AWRLK-TDVALVSVVLSGFFGSSFST---LVHTWGL 150 (231)
Q Consensus 84 ~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~-~~~~~~~l~~lgv~~~~i~~---~~~~~~l 150 (231)
..++.+ +|+...+...-.-.+.+++..+.+|+... .++.. +..-+..+.+++. ++..++ ..-+..+
T Consensus 186 ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl 264 (349)
T KOG1443|consen 186 LLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLL 264 (349)
T ss_pred HHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHhee
Confidence 766654 46666666666666677777777776211 12211 1112222222222 223333 3345677
Q ss_pred hcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 151 HLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 151 ~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
.+++..+.++..-.--+-..+++..+.+|+++..-|+|..+...|+.+...+
T Consensus 265 ~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~ 316 (349)
T KOG1443|consen 265 SRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNE 316 (349)
T ss_pred eeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccC
Confidence 8889999999999999999999999999999999999999999999988443
No 46
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.57 E-value=1.3e-08 Score=86.87 Aligned_cols=178 Identities=12% Similarity=0.148 Sum_probs=136.5
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
++++.+|+.++...+.+.....|+.+-.. .+ ..-.+.|.+.++.+.+..+...++.
T Consensus 127 ~~~~~~~~~s~~~~lsL~piv~GV~ias~---~e---------------------~~fn~~G~i~a~~s~~~~al~~I~~ 182 (316)
T KOG1441|consen 127 SVLLLGKTYSSMTYLSLLPIVFGVAIASV---TE---------------------LSFNLFGFISAMISNLAFALRNILS 182 (316)
T ss_pred HHHHhCCCCcceEEEEEEEeeeeEEEeee---cc---------------------ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999888888876651 11 1234679999999999999999999
Q ss_pred HHHHhh--c-ChhHHHHHHHHHHHHHHHH-HHHHhhcCCcc------cccccchhHHHHHHHHHhHHHHHHHHHHHHHhh
Q 026867 82 AHIIKI--Y-PAELVVVSLYLLCASIISV-PACLMAEQDLS------AWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLH 151 (231)
Q Consensus 82 ~~~~~~--~-~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~ 151 (231)
++..++ . -++.....++.-++.++++ |+....++... .|. .....+.+.. +....-+..-+..+.
T Consensus 183 ~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s-v~~f~~Nls~f~~ig 257 (316)
T KOG1441|consen 183 KKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWF----VTFLILLLNS-VLAFLLNLSAFLVIG 257 (316)
T ss_pred HHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccc----hhhHHHHHHH-HHHHHHHHHHHHHHc
Confidence 998842 1 2477888887777777777 66666555332 222 1233344444 344455667788999
Q ss_pred cCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccccC
Q 026867 152 LKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEEG 208 (231)
Q Consensus 152 ~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~~ 208 (231)
+.+|.+-+..+.+--...++.++++|++++++.+.+|.++-++|+++..+.|.++++
T Consensus 258 ~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 258 RTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred ccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999999999999999999999877766544
No 47
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.46 E-value=2.7e-06 Score=71.04 Aligned_cols=140 Identities=13% Similarity=0.166 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCccccc-ccchhHHHHHHHHHhHHHH
Q 026867 62 TGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWR-LKTDVALVSVVLSGFFGSS 140 (231)
Q Consensus 62 ~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~lgv~~~~ 140 (231)
.|+++.+.|-+.|+......|. .++.+ +..+..++.+.+.+.+..+.....+...-+. ......+......++. ..
T Consensus 7 ~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i~ 83 (293)
T COG2962 7 KGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-IG 83 (293)
T ss_pred chhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-HH
Confidence 5999999999999988888775 56666 7899999999888888776666543211111 1111356666666664 56
Q ss_pred HHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 141 FSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 141 i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
...+.|.|+.++-....+|+-=++.|++.+++|.++++|+++..|++...+-.+|+....+...
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999999999999988766544
No 48
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.45 E-value=6.8e-06 Score=70.08 Aligned_cols=129 Identities=9% Similarity=-0.010 Sum_probs=99.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHH
Q 026867 59 NWVTGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFG 138 (231)
Q Consensus 59 ~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~ 138 (231)
+...|..++++++++|+......|....+.+ +....++++.++++++.++...... +.+ ...|...+..|+.
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~-----~~~-~~~~~~~~~~g~~- 80 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL-----RFA-KEQRLPLLFYGVS- 80 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc-----cCC-HHHHHHHHHHHHH-
Confidence 4467999999999999999999999888877 8999999999999888665432111 111 1456666677765
Q ss_pred HHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhee
Q 026867 139 SSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 139 ~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~ 201 (231)
....+.++++++++.++..++.+.++.|++..+++. |++.. ..+..+.++|+.++..
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeee
Confidence 567788899999999999999999999999988763 55543 4556677888887653
No 49
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=1.2e-05 Score=68.00 Aligned_cols=181 Identities=14% Similarity=0.180 Sum_probs=135.9
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
|.+++|.|++..-+.++..-.+|..... ..+ ......|..+++...++-+.+.+..
T Consensus 121 E~lf~~~~~~~~v~~Sv~~m~~~s~~~~-~~d-----------------------~sf~~~gY~w~~~n~~~~a~~~v~~ 176 (314)
T KOG1444|consen 121 EVLFFGKRPSNKVWASVFAMIIGSVAAA-FTD-----------------------LSFNLRGYSWALANCLTTAAFVVYV 176 (314)
T ss_pred HHhhcCcCchhhHHHHHHHHHHHHHhhc-ccc-----------------------ceecchhHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999987775 211 1122359999999999999999999
Q ss_pred HHHHhhcC-hhHHHHHHHHHHHHHHHHHHHHhhcC------CcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Q 026867 82 AHIIKIYP-AELVVVSLYLLCASIISVPACLMAEQ------DLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKG 154 (231)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~ 154 (231)
|+..+... +.+..+++..++.........++++. +.+.|.. ...+..+...++++-++ -++-++..+..+
T Consensus 177 kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~~~~lScv~gf~i-sy~s~~ct~~~S 253 (314)
T KOG1444|consen 177 KKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLVVMLLSCVMGFGI-SYTSFLCTRVNS 253 (314)
T ss_pred HHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 98765433 35778888888888888777766543 1122221 13466677777765544 455678889999
Q ss_pred ceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccccCc
Q 026867 155 PVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEEGT 209 (231)
Q Consensus 155 ~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~~~ 209 (231)
+...+.+....-....+.+.++++++.++..++|..+-++|-.+..+.+.++++.
T Consensus 254 AtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 254 ATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred ccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 9999999977788888888888889999999999999998888877766554443
No 50
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.31 E-value=1e-05 Score=67.05 Aligned_cols=184 Identities=13% Similarity=0.151 Sum_probs=117.7
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
+++++|.|.+.+|..++.+.=+|+++-++...++.+.. ...+-+.+..+....|..|+.+..+|.+.-|.-.+.+
T Consensus 109 g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~-----~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyq 183 (330)
T KOG1583|consen 109 GWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSK-----LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQ 183 (330)
T ss_pred HHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhh-----hcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999988875543333320 0000001111223457789888888877777766666
Q ss_pred HHHHhhcC-hhHHHHHHHHHHHHHHHHHHHHhhcCC-----------------cccccccchhHHHHHHHHHhHHHHHHH
Q 026867 82 AHIIKIYP-AELVVVSLYLLCASIISVPACLMAEQD-----------------LSAWRLKTDVALVSVVLSGFFGSSFST 143 (231)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~lgv~~~~i~~ 143 (231)
.+.-+++. ++-..+++.=....... ++...+ ......| ..|.+++. .++.+
T Consensus 184 E~~Y~kyGKh~~EalFytH~LsLP~F----lf~~~div~~~~~~~~se~~~~p~~g~~vP--~~~~yLl~-----n~L~Q 252 (330)
T KOG1583|consen 184 ETTYQKYGKHWKEALFYTHFLSLPLF----LFMGDDIVSHWRLAFKSESYLIPLLGFKVP--SMWVYLLF-----NVLTQ 252 (330)
T ss_pred HHHHHHhcCChHHHHHHHHHhccchH----HHhcchHHHHHHHHhcCcceeccccCcccc--HHHHHHHH-----HHHHH
Confidence 66554443 34455555533333222 221111 0011111 35665554 33444
Q ss_pred HHHHHHh----hcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhee
Q 026867 144 LVHTWGL----HLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 144 ~~~~~~l----~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~ 201 (231)
+.-.++. ...++.+++++..+--.++.+++++.|..++++..|+|+.+++.|-++...
T Consensus 253 y~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 253 YFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4444444 445678899999999999999999999999999999999999999777643
No 51
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.31 E-value=3.8e-06 Score=61.97 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=60.4
Q ss_pred HhHHHHHHHHHHHHHhhcCCceeeeehh-chHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 135 GFFGSSFSTLVHTWGLHLKGPVYIAIFK-PLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 135 gv~~~~i~~~~~~~~l~~~~~~~~s~~~-~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
.+...+++++++.+++|+.+...+-.+. -+.-+...+.+++++||++|+.+++|..+|+.|++.++...+
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 3445678999999999999998887774 478888899999999999999999999999999998865554
No 52
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.29 E-value=3e-05 Score=67.10 Aligned_cols=144 Identities=10% Similarity=0.068 Sum_probs=101.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhH
Q 026867 59 NWVTGGFLLIAQCLLNSIWYILQAHIIKIY-PAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFF 137 (231)
Q Consensus 59 ~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~ 137 (231)
+.+.+.+++-.-++|-+...+....+.++. +-|...+++.+..-.++..+......+ ...+.......|+..+.+++
T Consensus 10 ~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~-~~~~~~~~~~~~w~y~lla~- 87 (334)
T PF06027_consen 10 RFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRG-FKKWLKVLKRPWWKYFLLAL- 87 (334)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccc-cccchhhcchhHHHHHHHHH-
Confidence 345566666666666666666666665542 235666666655544444443333221 11221111234555566676
Q ss_pred HHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 138 GSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 138 ~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
.=+-+.++++.++++.+.+.+.++.....++++++++++++++.++.+++|+++.+.|+.++.....
T Consensus 88 ~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 88 LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 4678999999999999999999999999999999999999999999999999999999988876543
No 53
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.27 E-value=3e-05 Score=64.89 Aligned_cols=171 Identities=17% Similarity=0.157 Sum_probs=111.0
Q ss_pred Ccccccccccchhhh----HHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKII----GAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIW 77 (231)
Q Consensus 2 ~~~~lkek~~~~~~~----g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~ 77 (231)
+.++|+|-.+..+++ ++++.++|+.+-. .+++..+. .++..+...|.+..+++.+.|..|
T Consensus 90 gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts-~~~~~~~~---------------~~~~~~~~kgi~~Ll~stigy~~Y 153 (269)
T PF06800_consen 90 GVLFFGEWTTTTQKIIGFLALVLIIIGVILTS-YQDKKSDK---------------SSSKSNMKKGILALLISTIGYWIY 153 (269)
T ss_pred HHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc-cccccccc---------------cccccchhhHHHHHHHHHHHHHHH
Confidence 346788877766654 6666677776654 22221110 011245567999999999999999
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCcee
Q 026867 78 YILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVY 157 (231)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~ 157 (231)
.++-|.. +.+ ++.....+.+--.+...++..+. ++....+ ..|.. +.-|+ .=.++..+|..+.++.+.+.
T Consensus 154 ~~~~~~~--~~~-~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~k----~~~~n-il~G~-~w~ignl~~~is~~~~G~a~ 223 (269)
T PF06800_consen 154 SVIPKAF--HVS-GWSAFLPQAIGMLIGAFIFNLFS-KKPFFEK----KSWKN-ILTGL-IWGIGNLFYLISAQKNGVAT 223 (269)
T ss_pred HHHHHhc--CCC-hhHhHHHHHHHHHHHHHHHhhcc-ccccccc----chHHh-hHHHH-HHHHHHHHHHHhHHhccchh
Confidence 9997752 333 66666655332222222333322 1111111 12222 33344 24578889999999999999
Q ss_pred eeehhchHHHHHHHHHHHHhCCCchhh----hHHHHHHHHHHhhh
Q 026867 158 IAIFKPLSIAIAAIMGVVFLGDTLHLG----SVIGAIIICIGFYA 198 (231)
Q Consensus 158 ~s~~~~~~P~~a~i~~~~~~gE~~~~~----~ilG~~lii~Gv~l 198 (231)
.-.+.-+.++.+.++|.+++||+=+.. .++|.++++.|.++
T Consensus 224 af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 224 AFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999987754 46688888888654
No 54
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.13 E-value=1.4e-05 Score=58.12 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHhhcCCceeeeehh-chHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 136 FFGSSFSTLVHTWGLHLKGPVYIAIFK-PLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 136 v~~~~i~~~~~~~~l~~~~~~~~s~~~-~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
+.+.+++++++..++|+.+.+.+-.+- -+.-+...++|+++|||++++.+++|..+|+.|++..+..++
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345678889999999999988876663 367777899999999999999999999999999999865443
No 55
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.13 E-value=4.5e-06 Score=66.01 Aligned_cols=179 Identities=18% Similarity=0.246 Sum_probs=121.3
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 026867 3 KLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQA 82 (231)
Q Consensus 3 ~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~ 82 (231)
+..+|+|+...|+++.++++.|++++. +.+++. .+.+.|+..+..++.+-|+|-+..|
T Consensus 98 ~IVL~D~~~~~kIlaailAI~GiVmia-y~DN~~---------------------a~e~iGi~~AV~SA~~aAlYKV~FK 155 (290)
T KOG4314|consen 98 IIVLGDRFMGFKILAAILAIGGIVMIA-YADNEH---------------------ADEIIGIACAVGSAFMAALYKVLFK 155 (290)
T ss_pred HHHhccchhhhhHHHHHHHhCcEEEEE-eccchh---------------------hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999886 322221 3457899999999999999999999
Q ss_pred HHHhhcC--hhHHHHHHHHHHH-HHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeee
Q 026867 83 HIIKIYP--AELVVVSLYLLCA-SIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIA 159 (231)
Q Consensus 83 ~~~~~~~--~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s 159 (231)
+...+-+ +.-.++...-++- ++...+..........+|.......|+.+...+.... -..++.+.++....|...+
T Consensus 156 ~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~l-AFN~~iN~GiaL~~PilIS 234 (290)
T KOG4314|consen 156 MFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSL-AFNFLINFGIALLNPILIS 234 (290)
T ss_pred HHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHH-HHhhheeehhhhhchhhhe
Confidence 9875533 2222222111111 1122221111111223343222234666665555433 3456678888899999999
Q ss_pred ehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 160 IFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 160 ~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
.-.....+-....+.++-+-..+.....|..+|+.|.+++.....
T Consensus 235 iG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d 279 (290)
T KOG4314|consen 235 IGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED 279 (290)
T ss_pred ehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence 988888888888999877767888899999999999888775443
No 56
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.12 E-value=7.2e-06 Score=66.03 Aligned_cols=185 Identities=14% Similarity=0.181 Sum_probs=132.0
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
|.++|+.|++.....+.++-++..+.-...+.+.... .....+.|.+++...++.-+.|...-
T Consensus 112 Evl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~-----------------~~~~lN~GY~Wm~~NclssaafVL~m 174 (309)
T COG5070 112 EVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAF-----------------KAQILNPGYLWMFTNCLSSAAFVLIM 174 (309)
T ss_pred HHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHH-----------------HhcccCCceEEEehhhHhHHHHHHHH
Confidence 6678999999999988888777765554211111110 11234569999999999999999888
Q ss_pred HHHHhhcC-hhHHHHHHHHHHHHHHHHHHHHhhcCCcc-cccc-cchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceee
Q 026867 82 AHIIKIYP-AELVVVSLYLLCASIISVPACLMAEQDLS-AWRL-KTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYI 158 (231)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~ 158 (231)
|+..+-.. .....+++..+.+..+++.+.++++.+-+ .... .+.....+++..|+.+ +.--++-.|.++..+.+.-
T Consensus 175 rkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTty 253 (309)
T COG5070 175 RKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTY 253 (309)
T ss_pred HHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHH
Confidence 87654322 25788999999999999999988764211 1111 1223455677777744 4444566888999999999
Q ss_pred eehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 159 AIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 159 s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
+++..+.-.-..+-|.++++|+.+...+....+-..+..+....+.
T Consensus 254 SMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks 299 (309)
T COG5070 254 SMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKS 299 (309)
T ss_pred HHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888999999999999999999888887755444444443
No 57
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.10 E-value=1.3e-05 Score=68.56 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHhhcCCceeeeehhchH-HHHHHHHHHHHhCC--Cchh----hhHHHHHHHHHHhhhheecCc
Q 026867 136 FFGSSFSTLVHTWGLHLKGPVYIAIFKPLS-IAIAAIMGVVFLGD--TLHL----GSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 136 v~~~~i~~~~~~~~l~~~~~~~~s~~~~~~-P~~a~i~~~~~~gE--~~~~----~~ilG~~lii~Gv~l~~~~~~ 204 (231)
+.+........|+++++.+++.+.++.+.. -..+++-|.++++| +.++ ....|..+++.|+++....|.
T Consensus 220 v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 220 VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 335667777889999999999888776654 55566677778887 4444 446688888999998865444
No 58
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.96 E-value=0.00024 Score=60.87 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhcC-h--hHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcC
Q 026867 77 WYILQAHIIKIYP-A--ELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLK 153 (231)
Q Consensus 77 ~~v~~~~~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~ 153 (231)
+.+.+.+..++.. . +...++.++.+..+...+.......... +. ..+...+..++ ...++..+-+.+++++
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~-~~~~~~~~~~~al~~i 88 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS--RK---IPLKKYAILSF-LFFLASVLSNAALKYI 88 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC--Cc---ChHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 4466666554332 3 7788888888888877666665331111 11 12333344444 4667888999999999
Q ss_pred CceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccccC
Q 026867 154 GPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEEG 208 (231)
Q Consensus 154 ~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~~ 208 (231)
+...-.+.-...|+..+++++++++++.+..++++++++.+|+.+....+.+..+
T Consensus 89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 89 SYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred ChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 9999999999999999999999999999999999999999999998876654443
No 59
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.94 E-value=6.9e-05 Score=62.43 Aligned_cols=184 Identities=15% Similarity=0.134 Sum_probs=122.0
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 026867 4 LTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQAH 83 (231)
Q Consensus 4 ~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~~ 83 (231)
-+++.+++.+||+|+....+|++++-..+ ..... .| . ....+.+.|+++.+.+-+.-|+-++.-.|
T Consensus 132 ~~Ln~ti~~~qWl~i~fv~lGlviVg~~d---~~~~~-~p--------~--~d~s~iitGdllIiiaqiivaiQ~v~Eek 197 (372)
T KOG3912|consen 132 MFLNRTITGRQWLGILFVSLGLVIVGSLD---VHLVT-DP--------Y--TDYSSIITGDLLIIIAQIIVAIQMVCEEK 197 (372)
T ss_pred HHHhcccchhhHHHHHHHHhhhheeeeee---ccccc-CC--------c--cccccchhhhHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999998875211 11000 00 0 11245678999999999999998888888
Q ss_pred HHhhcC-hhHHHHHHHHHHHHHHHHHHHHhhcC-----CcccccccchhHHHH---------HHHHHhHHHHHHHHHHH-
Q 026867 84 IIKIYP-AELVVVSLYLLCASIISVPACLMAEQ-----DLSAWRLKTDVALVS---------VVLSGFFGSSFSTLVHT- 147 (231)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------l~~lgv~~~~i~~~~~~- 147 (231)
..++.+ +|.....|.-++|.+++..++..... .++.-+......|.. .+++...+..++-.++|
T Consensus 198 ~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNf 277 (372)
T KOG3912|consen 198 QLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNF 277 (372)
T ss_pred hhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeee
Confidence 776653 58999999999887766655554322 111000000022322 12233333344444443
Q ss_pred ---HHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhee
Q 026867 148 ---WGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 148 ---~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~ 201 (231)
+.-|..++++-++.-.+-..+-=+++.....|.++..|+.|.++.+.|.++.+.
T Consensus 278 aGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 278 AGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred hhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234556777777777777777777788788899999999999999999988753
No 60
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.91 E-value=8.2e-05 Score=63.69 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=92.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCh-hHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHh
Q 026867 58 SNWVTGGFLLIAQCLLNSIWYILQAHIIKIYPA-ELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGF 136 (231)
Q Consensus 58 ~~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv 136 (231)
.++..|.++++.++++.+....++|+..++.+. ...-. .+..+.++. ..|+. |.
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~------------------~~~~~~l~~---~~W~~----G~ 57 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG------------------SGGRSYLRR---PLWWI----GL 57 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc------------------chhhHHHhh---HHHHH----HH
Confidence 467889999999999999999999997655431 00000 000011111 12332 33
Q ss_pred HHHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCcccc
Q 026867 137 FGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEE 207 (231)
Q Consensus 137 ~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~ 207 (231)
...+++..+-+.++...+++.++++..+.-++..+++.++++|+++...++|+++++.|..++....++++
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~ 128 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEE 128 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCC
Confidence 34556777888899999999999999999999999999999999999999999999999887665554433
No 61
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.87 E-value=0.00016 Score=52.11 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhhcCCceeeeehhc-hHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhee
Q 026867 137 FGSSFSTLVHTWGLHLKGPVYIAIFKP-LSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 137 ~~~~i~~~~~~~~l~~~~~~~~s~~~~-~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~ 201 (231)
.+..+++++...++|+.+...+-.+-. +.-+...+.|+++|||++|+.+++|..+++.|++..+.
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 346788999999999998877755544 77777889999999999999999999999999998754
No 62
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=1.5e-05 Score=66.08 Aligned_cols=185 Identities=14% Similarity=0.142 Sum_probs=128.4
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQ 81 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~ 81 (231)
..+++|+|-+..-..+.++.+.|--+ | .++. +..+.-.+.|.+++..|.++-|+..+..
T Consensus 146 tyvllkqkTs~~~~~~C~lIi~GF~l-----G--vdqE--------------~~~~~ls~~GvifGVlaSl~vAlnaiyt 204 (347)
T KOG1442|consen 146 TYVLLKQKTSFFALGCCLLIILGFGL-----G--VDQE--------------GSTGTLSWIGVIFGVLASLAVALNAIYT 204 (347)
T ss_pred HHhhcccccccccceeehhheehhee-----c--cccc--------------cccCccchhhhHHHHHHHHHHHHHHHhh
Confidence 34688999998888887777776211 1 2211 0112334689999999999999999999
Q ss_pred HHHHhhcCh-hHHHHHHHHHHHHHHHHHHHHhhcC--Cccccccc-chhHHHHHHHHHhHHHHHHHHHHHHHhhcCCcee
Q 026867 82 AHIIKIYPA-ELVVVSLYLLCASIISVPACLMAEQ--DLSAWRLK-TDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVY 157 (231)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~-~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~ 157 (231)
||......+ -+..+++..+.+.+...|...+-.. ....++.. ....|..+...|+++-.++|.. .+=+|-.+|.+
T Consensus 205 kk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT-g~QIK~TSplT 283 (347)
T KOG1442|consen 205 KKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT-GWQIKVTSPLT 283 (347)
T ss_pred heecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhee-eEEEEecccce
Confidence 876544432 5788888899998888887776322 11111121 2246777778888776666543 23456677777
Q ss_pred eeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccccC
Q 026867 158 IAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEEG 208 (231)
Q Consensus 158 ~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~~ 208 (231)
=.+-..--...=.++++.+++|.-+..-|-|-++++.|-.+..+.|+.+++
T Consensus 284 hnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~ 334 (347)
T KOG1442|consen 284 HNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMR 334 (347)
T ss_pred eeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHH
Confidence 777777777777889999999999999999999999887777665554444
No 63
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.83 E-value=1.2e-05 Score=66.53 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=97.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHH
Q 026867 59 NWVTGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFG 138 (231)
Q Consensus 59 ~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~ 138 (231)
....|.++..++ ..+...+++.++..... |......++++-..+..+......... +-.. ..-.+++.=|+.
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~~v--~gp~--g~R~~LiLRg~m- 106 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQPV--IGPE--GKRKWLILRGFM- 106 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEeeee--ecCC--CcEEEEEeehhh-
Confidence 456788888888 77788888888876554 455555554444443333332211110 1010 112233344543
Q ss_pred HHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 139 SSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 139 ~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
+..+....+|++++.+-+.+.++.++.|+++.++++.+++|+.+....+|..+.+.|++++.+..-
T Consensus 107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 446778899999999999999999999999999999999999999999999999999999876654
No 64
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.79 E-value=0.00036 Score=50.63 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhcCCceeeeehhc-hHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhe
Q 026867 138 GSSFSTLVHTWGLHLKGPVYIAIFKP-LSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 138 ~~~i~~~~~~~~l~~~~~~~~s~~~~-~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~ 200 (231)
...++|++...++|+.+...+-.+.. +.-+...+.+++++||++++.+++|..+|+.|++..+
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 46688999999999999887755544 6667778899999999999999999999999998864
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.77 E-value=0.00024 Score=61.73 Aligned_cols=140 Identities=11% Similarity=0.087 Sum_probs=92.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHH----HhhcCCc-ccccccchhHHHHHHH
Q 026867 59 NWVTGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPAC----LMAEQDL-SAWRLKTDVALVSVVL 133 (231)
Q Consensus 59 ~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~-~~~~~~~~~~~~~l~~ 133 (231)
+...|+++++++++||+.+++-.|+ .++.+ +... |- ..+.+..+... .+..++. ......+...+..-+.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 4568999999999999999999998 55554 3322 32 11111111111 1111111 1222222245555566
Q ss_pred HHhHHHHHHHHHHHHHhhcCCceeeeehhc-hHHHHHHHHHHHHhCCCc---h----hhhHHHHHHHHHHhhhheecCc
Q 026867 134 SGFFGSSFSTLVHTWGLHLKGPVYIAIFKP-LSIAIAAIMGVVFLGDTL---H----LGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 134 lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~-~~P~~a~i~~~~~~gE~~---~----~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
.|++ =.+++..+..++|+.+.+.+..+.. ++-+.+.+++.+++||=. + ....+|.+++++|+.+..+..+
T Consensus 79 ~G~~-W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 79 FGAL-WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHH-HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6664 5689999999999999988877654 677888899999999633 2 3458899999999999987443
No 66
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.0002 Score=51.29 Aligned_cols=66 Identities=23% Similarity=0.357 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhhcCCceeee-ehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecC
Q 026867 138 GSSFSTLVHTWGLHLKGPVYIA-IFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGK 203 (231)
Q Consensus 138 ~~~i~~~~~~~~l~~~~~~~~s-~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~ 203 (231)
+..++|++...++|+++...+- ...-.-.+...+.|+++|||++++.+++|..++++|++..+..+
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 4567888888889988876653 33445566678899999999999999999999999999876543
No 67
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.62 E-value=0.0093 Score=51.94 Aligned_cols=175 Identities=16% Similarity=0.170 Sum_probs=98.3
Q ss_pred chhhhHHHHHHHHHHHHHHH---hCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHH-------HHH
Q 026867 12 QAKIIGAIVSISGALLVVLY---KGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWY-------ILQ 81 (231)
Q Consensus 12 ~~~~~g~~i~~~G~~li~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~-------v~~ 81 (231)
..-.+|+++.++|+++.... ++++.+. ....+.+.-.|.++++++.+.+++|+ ...
T Consensus 135 ~~~~~gv~liliGi~l~s~Ag~~k~~~~~~--------------~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~ 200 (345)
T PRK13499 135 RMTLLGVLVALIGVAIVGRAGQLKERKMGI--------------KKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMH 200 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccc--------------ccccccchHhHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 44678889999999888731 2111100 00113456789999999999999999 544
Q ss_pred HHHHhhcChhHHHHHHHHH---HHHHHHH-HHHHhh---cCCccccccc--chhHHHHH----HHHHhHHHHHHHHHHHH
Q 026867 82 AHIIKIYPAELVVVSLYLL---CASIISV-PACLMA---EQDLSAWRLK--TDVALVSV----VLSGFFGSSFSTLVHTW 148 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~---~~~i~~~-~~~~~~---~~~~~~~~~~--~~~~~~~l----~~lgv~~~~i~~~~~~~ 148 (231)
+.......++......++. .+..+.- ++..+. ++........ +...+.-- +.-|+ .=.+++.+|..
T Consensus 201 ~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~ 279 (345)
T PRK13499 201 EAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAM 279 (345)
T ss_pred hhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4322222223333333332 3433322 222221 1111111110 00111222 22222 34566778888
Q ss_pred HhhcCCceeeee---hh-chHHHHHHHHHHHHhCCCch------hhhHHHHHHHHHHhhhheec
Q 026867 149 GLHLKGPVYIAI---FK-PLSIAIAAIMGVVFLGDTLH------LGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 149 ~l~~~~~~~~s~---~~-~~~P~~a~i~~~~~~gE~~~------~~~ilG~~lii~Gv~l~~~~ 202 (231)
+-++.+...... +. .+..+++.++|.+ ++|.=+ ...++|.++++.|..++...
T Consensus 280 ~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 280 GHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 888886655544 44 6666999999994 999766 56688999999998887554
No 68
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.61 E-value=0.0017 Score=49.24 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHH
Q 026867 63 GGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFS 142 (231)
Q Consensus 63 G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~ 142 (231)
..++++.+..+-++-..+..++.++..+++..+++.+..|.+.+..+..+.... +.+......|+.. +|-+.+++.
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~--lGG~lG~~~ 77 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAY--LGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHh--ccHHHHHHH
Confidence 356777888888888888888877776689999999999999888777775542 2221111223332 243345677
Q ss_pred HHHHHHHhhcCCceeeeehhc-hHHHHHHHHHHH----HhCCCchhhhHHHHHHHHHHhhh
Q 026867 143 TLVHTWGLHLKGPVYIAIFKP-LSIAIAAIMGVV----FLGDTLHLGSVIGAIIICIGFYA 198 (231)
Q Consensus 143 ~~~~~~~l~~~~~~~~s~~~~-~~P~~a~i~~~~----~~gE~~~~~~ilG~~lii~Gv~l 198 (231)
-.+..+..++.+++.+..... -|-+.+++++.+ .-++++++..++|.+++++|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 778888899999887766554 466667777775 34578999999999999999864
No 69
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.55 E-value=0.00054 Score=48.28 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhcCCceeeeehh-chHHHHHHHHHHHHhCCCchhhhHHHHHHH
Q 026867 138 GSSFSTLVHTWGLHLKGPVYIAIFK-PLSIAIAAIMGVVFLGDTLHLGSVIGAIII 192 (231)
Q Consensus 138 ~~~i~~~~~~~~l~~~~~~~~s~~~-~~~P~~a~i~~~~~~gE~~~~~~ilG~~li 192 (231)
+.+++++++.+++|+.+.+.+-.+. -+..+...+.|++++||++|+.+++|..+|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 5678999999999999999986654 488899999999999999999999999875
No 70
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.0051 Score=47.00 Aligned_cols=140 Identities=10% Similarity=0.100 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHH
Q 026867 61 VTGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSS 140 (231)
Q Consensus 61 ~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~ 140 (231)
.+..++.+.+..+-.+-..+..++.+...+|..-.++.+..|++.+..+.++.++. .++.......|+. ..-|+++ +
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~-~~~a~~~~~pwW~-~~GG~lG-a 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGH-PGLAAVASAPWWA-WIGGLLG-A 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhccCCchHH-HHccchh-h
Confidence 35677888888888888888888877777799999999999999998888885432 2222111112322 1223322 2
Q ss_pred HHHHHHHHHhhcCCce-eeeehhchHHHHHHHHHHHHhC----CCchhhhHHHHHHHHHHhhhheecC
Q 026867 141 FSTLVHTWGLHLKGPV-YIAIFKPLSIAIAAIMGVVFLG----DTLHLGSVIGAIIICIGFYAVLWGK 203 (231)
Q Consensus 141 i~~~~~~~~l~~~~~~-~~s~~~~~~P~~a~i~~~~~~g----E~~~~~~ilG~~lii~Gv~l~~~~~ 203 (231)
+--..-....++.+++ +......-|-+.+++++-+=+. .+++...++|++++++|+++..+++
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 2223334455666544 4445555667777777776554 6889999999999999966665443
No 71
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.27 E-value=0.0064 Score=51.05 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhc-hHHHHHHHHHHHHhCCCchhhh----HHHHHHHHHHhhhhe
Q 026867 126 VALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKP-LSIAIAAIMGVVFLGDTLHLGS----VIGAIIICIGFYAVL 200 (231)
Q Consensus 126 ~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~-~~P~~a~i~~~~~~gE~~~~~~----ilG~~lii~Gv~l~~ 200 (231)
..+..-+..|++ =.+++...+++.++.+.+++.+++. ++-+.+.++++++|||--+..+ .++.+++++|+++..
T Consensus 43 ~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 43 TSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 456666666764 5789999999999999999999985 6666688899999999666444 457788889999998
Q ss_pred ecCccccC
Q 026867 201 WGKANEEG 208 (231)
Q Consensus 201 ~~~~~~~~ 208 (231)
++++++++
T Consensus 122 ~~~~~~~~ 129 (269)
T PF06800_consen 122 YQDKKSDK 129 (269)
T ss_pred cccccccc
Confidence 87776554
No 72
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.06 E-value=0.0023 Score=53.21 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccc
Q 026867 138 GSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANE 206 (231)
Q Consensus 138 ~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~ 206 (231)
.-.+...+.+.++++.+|....++..+..+++.++++++++++++..||++..++++|+.++.......
T Consensus 26 lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 26 LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 356788899999999999999999999999999999999999999999999999999999987666544
No 73
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.0005 Score=56.33 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHH
Q 026867 63 GGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFS 142 (231)
Q Consensus 63 G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~ 142 (231)
..+++++=++.|+.......|... .|...+.-+ .+++++..+..+++. ++. .....+..-+..|.+ =.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGt-T~GALifaiiv~~~~-~p~----~T~~~~iv~~isG~~-Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGT-TLGALIFAIIVFLFV-SPE----LTLTIFIVGFISGAF-WSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhc-cHHHHHHHHHHheee-cCc----cchhhHHHHHHhhhH-hhhh
Confidence 567889999999988777766422 244444433 334444333333321 111 111234444444543 4589
Q ss_pred HHHHHHHhhcCCceeeeehhc-hHHHHHHHHHHHHhCCCchhhh----HHHHHHHHHHhhhheecCcc
Q 026867 143 TLVHTWGLHLKGPVYIAIFKP-LSIAIAAIMGVVFLGDTLHLGS----VIGAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 143 ~~~~~~~l~~~~~~~~s~~~~-~~P~~a~i~~~~~~gE~~~~~~----ilG~~lii~Gv~l~~~~~~~ 205 (231)
+...+++++..+.+++++++. ++-+-+.++|++.|+|=.++.+ .+..++++.|+++..+++|.
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~ 140 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN 140 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence 999999999999999998876 6777788999999999777666 34567778899998877663
No 74
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.70 E-value=0.008 Score=43.76 Aligned_cols=109 Identities=11% Similarity=0.028 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHH
Q 026867 69 AQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTW 148 (231)
Q Consensus 69 ~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~ 148 (231)
+-+++|++.+.+.||..+...+.-.- . +..-.... .+ ..|-+.+ +......+-..|++
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~~-----Ll-------------~n~~y~i--pf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIKF-----LL-------------LNPKYII--PFLLNQSGSVLFFL 60 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHHH-----HH-------------HhHHHHH--HHHHHHHHHHHHHH
Confidence 34688999999999988766522221 1 21111111 11 0111111 22224456788999
Q ss_pred HhhcCCceeeeeh-hchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhh
Q 026867 149 GLHLKGPVYIAIF-KPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAV 199 (231)
Q Consensus 149 ~l~~~~~~~~s~~-~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~ 199 (231)
.+.+.+-+.+..+ +.+.=+++++.++++.+|..+...++|+.+++.|+.++
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 9999999999999 58999999999998888888889999999999998764
No 75
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.12 Score=44.80 Aligned_cols=145 Identities=14% Similarity=0.011 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC---hhHHHHHHHHHHHHHHHHHHHHhhcCC-ccccc--cc--chhHH--HHH
Q 026867 62 TGGFLLIAQCLLNSIWYILQAHIIKIYP---AELVVVSLYLLCASIISVPACLMAEQD-LSAWR--LK--TDVAL--VSV 131 (231)
Q Consensus 62 ~G~l~~l~aa~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~--~~--~~~~~--~~l 131 (231)
.-.+.++...+.++......|+..+... .+.+..+..=++-.+++....+...+. ...+. .. ....+ ...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 3445555666677777777776544331 255666666555556665555554211 00000 00 00112 111
Q ss_pred HHHHhHHHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccc
Q 026867 132 VLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANE 206 (231)
Q Consensus 132 ~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~ 206 (231)
..+-.+...+...+++.++.+.+|++......+-.+.+.++.+++++++.+..||...++.++|+.++.......
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~ 169 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP 169 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 222222345667799999999999999999999999999999999999999999999999999999988544433
No 76
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0018 Score=55.13 Aligned_cols=76 Identities=11% Similarity=0.155 Sum_probs=53.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhchH-HHHHHHHHHHHhCC--Cchh----hhHHHHHHHHHHhhhh
Q 026867 127 ALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLS-IAIAAIMGVVFLGD--TLHL----GSVIGAIIICIGFYAV 199 (231)
Q Consensus 127 ~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~-P~~a~i~~~~~~gE--~~~~----~~ilG~~lii~Gv~l~ 199 (231)
.|..++.+.. +........+++++..++..++.+.|.. ..++++-+.++|+| ..+. ....|+..++.|+++.
T Consensus 226 ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL 304 (335)
T KOG2922|consen 226 TWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLL 304 (335)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEe
Confidence 4555554444 4566777789999999999998887764 45566677777886 4443 4467888899998887
Q ss_pred eecC
Q 026867 200 LWGK 203 (231)
Q Consensus 200 ~~~~ 203 (231)
...|
T Consensus 305 ~~~k 308 (335)
T KOG2922|consen 305 HRTK 308 (335)
T ss_pred eeec
Confidence 5433
No 77
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.0035 Score=53.37 Aligned_cols=128 Identities=17% Similarity=0.254 Sum_probs=96.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHh
Q 026867 57 LSNWVTGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGF 136 (231)
Q Consensus 57 ~~~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv 136 (231)
..++..|.++++.+.+.-+...++.||..++.. . ...+. .++...... .+.|+ .|+
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~ra-------------~~gg~~yl~---~~~Ww----~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGLRA-------------GEGGYGYLK---EPLWW----AGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hcccc-------------cCCCcchhh---hHHHH----HHH
Confidence 356778999999999999999999988665532 1 00000 011112221 12233 466
Q ss_pred HHHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccccC
Q 026867 137 FGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEEG 208 (231)
Q Consensus 137 ~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~~ 208 (231)
+...+|-..-+-+....+++.++.+..+..+.+.+++..+++|++++...+|+++.++|-.....+.+++++
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence 777788888888889999999999999999999999999999999999999999999997777666665544
No 78
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.81 E-value=0.019 Score=47.96 Aligned_cols=132 Identities=9% Similarity=-0.013 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHH
Q 026867 63 GGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFS 142 (231)
Q Consensus 63 G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~ 142 (231)
|.+.+++|+++++...+=.|+.... |++.+..+++....+...+...+.+ .+++ .+..-....+ =+.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~--~p~f--~p~amlgG~l------W~~g 68 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILG--FPPF--YPWAMLGGAL------WATG 68 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcC--CCcc--eeHHHhhhhh------hhcC
Confidence 5678899999999988888875433 3666666665544444444444322 1111 1101111111 1223
Q ss_pred HHHHHHHhhcCCceeeeehhch-HHHHHHHHHHH-HhCCCc-----hhhhHHHHHHHHHHhhhheecCccc
Q 026867 143 TLVHTWGLHLKGPVYIAIFKPL-SIAIAAIMGVV-FLGDTL-----HLGSVIGAIIICIGFYAVLWGKANE 206 (231)
Q Consensus 143 ~~~~~~~l~~~~~~~~s~~~~~-~P~~a~i~~~~-~~gE~~-----~~~~ilG~~lii~Gv~l~~~~~~~~ 206 (231)
..+-.-.+|.+|-...-.+-.. .-+.+-.+|-+ +||++. ++..++|++++++|..+...-|.+.
T Consensus 69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 3333344444443333222222 22333333322 455433 2567999999998888776555443
No 79
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.74 E-value=0.013 Score=50.94 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccc
Q 026867 139 SSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANE 206 (231)
Q Consensus 139 ~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~ 206 (231)
=..+.+.++.++.+.+++..++++.+.-+++..++.++-+|++++...++.++-+.|++++..+..++
T Consensus 169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 45788999999999999999999999999999999999999999999999999999999999887655
No 80
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.72 E-value=0.0085 Score=51.57 Aligned_cols=123 Identities=16% Similarity=0.239 Sum_probs=88.4
Q ss_pred HHHHHHHHHh--hcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Q 026867 77 WYILQAHIIK--IYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKG 154 (231)
Q Consensus 77 ~~v~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~ 154 (231)
+.+..|+..+ ..+.|...+..++..+.......-.+-.....+ .++...|..++-+|++ ..++..+-+.++++.+
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~--~~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK--ISSKLPLRTLLPLGLV-FCISHVLGNVSLSYVP 108 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc--cccccchHHHHHHHHH-HHHHHHhcchhhhccc
Confidence 3445566556 455577777776666666554444432211111 1122457788888885 6789999999999999
Q ss_pred ceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 155 PVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 155 ~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
.+..-..-.++|++.+++++++.+|+.+...++-...++.|+.+....
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~ 156 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVT 156 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeec
Confidence 999999999999999999999999999987777666666676666553
No 81
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.54 E-value=0.015 Score=47.88 Aligned_cols=131 Identities=16% Similarity=0.194 Sum_probs=87.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHH
Q 026867 59 NWVTGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFG 138 (231)
Q Consensus 59 ~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~ 138 (231)
+.-.|....+.+.+.|-.|.+..+...-+.-+.+.-.+.-|..+++.+ -.... ... . ....+..+.-|++
T Consensus 149 n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~----~~~~~--~~~-~--~K~t~~nii~G~~- 218 (288)
T COG4975 149 NLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALIL----GFFKM--EKR-F--NKYTWLNIIPGLI- 218 (288)
T ss_pred hhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHH----hhccc--ccc-h--HHHHHHHHhhHHH-
Confidence 455688999999999999999988764222123333333344443332 22111 111 1 1223333444443
Q ss_pred HHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhh----HHHHHHHHHHhhhh
Q 026867 139 SSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGS----VIGAIIICIGFYAV 199 (231)
Q Consensus 139 ~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~----ilG~~lii~Gv~l~ 199 (231)
=.++...++.+.++.+.++.=.++-+..+.+.+-|.++++|+=+..+ ++|.++++.|..+.
T Consensus 219 Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 219 WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 46788999999999999998888999999999999999999988765 56888888776654
No 82
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.03 E-value=0.033 Score=44.46 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccc
Q 026867 141 FSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANE 206 (231)
Q Consensus 141 i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~ 206 (231)
.+.+.|..++++++|+.++.+......+..+++++.+|+++....++.+++-+.|++++.+.....
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 356889999999999999999999999999999999999999999999999999998887655433
No 83
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.56 E-value=0.23 Score=40.87 Aligned_cols=131 Identities=13% Similarity=0.136 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHhh-cC----------hhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHH
Q 026867 71 CLLNSIWYILQAHIIKI-YP----------AELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGS 139 (231)
Q Consensus 71 a~~~a~~~v~~~~~~~~-~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~ 139 (231)
-+||-.|.+.+.|..|. +. -.+...+.+|..-.+..=++..+..... ......|.+..... +.
T Consensus 22 fvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~----~D~t~~~~YaAcs~--sY 95 (337)
T KOG1580|consen 22 FVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTE----IDNTPTKMYAACSA--SY 95 (337)
T ss_pred hheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccccc----ccCCcchHHHHHHH--HH
Confidence 45788899999888653 21 1345566666666555444333322211 11123444443332 34
Q ss_pred HHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCcccc
Q 026867 140 SFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEE 207 (231)
Q Consensus 140 ~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~ 207 (231)
..++..-+.+++..+=-+.-+--+.-|+=.+++|+++.+.+.+|..+.=..+|+.|+.+..++++|..
T Consensus 96 LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~ 163 (337)
T KOG1580|consen 96 LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG 163 (337)
T ss_pred HHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC
Confidence 56667778889988866666667788888999999999999999999999999999999988766543
No 84
>PRK02237 hypothetical protein; Provisional
Probab=92.12 E-value=0.77 Score=32.96 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=37.5
Q ss_pred ehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 160 IFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 160 ~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
.+.=...+.++++++++-|++++..-++|+.+.++|+.++....|
T Consensus 64 AYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 64 AYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 334445677899999999999999999999999999988766554
No 85
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.05 E-value=1.4 Score=38.20 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=83.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhh--cCCcc-cccccchhHHHHHHHHH
Q 026867 59 NWVTGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMA--EQDLS-AWRLKTDVALVSVVLSG 135 (231)
Q Consensus 59 ~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~-~~~~~~~~~~~~l~~lg 135 (231)
....|+++..+++++-+.+++=.|| .|+.+ =..+-..+.+++-+ ..|...-. -++.. .....+...+....+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kk-vk~Ws-WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKK-VKGWS-WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhh-cCCcc-HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 4578999999999999999999988 46664 22333333333322 22333321 22211 12222223455555555
Q ss_pred hHHHHHHHHHHHHHhhcCCceeeeeh-hchHHHHHHHHHHHHhCC-------CchhhhHHHHHHHHHHhhhheecCcccc
Q 026867 136 FFGSSFSTLVHTWGLHLKGPVYIAIF-KPLSIAIAAIMGVVFLGD-------TLHLGSVIGAIIICIGFYAVLWGKANEE 207 (231)
Q Consensus 136 v~~~~i~~~~~~~~l~~~~~~~~s~~-~~~~P~~a~i~~~~~~gE-------~~~~~~ilG~~lii~Gv~l~~~~~~~~~ 207 (231)
++ =.++-..|-.++|+++.+....+ .=+.-+++.++.-++.|+ +-....++|.++.++|+.++-+....|+
T Consensus 81 ~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 81 VL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred HH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 54 45677788888999886544322 223333344443333332 2234678899999999999876654443
Q ss_pred C
Q 026867 208 G 208 (231)
Q Consensus 208 ~ 208 (231)
+
T Consensus 160 ~ 160 (344)
T PF06379_consen 160 K 160 (344)
T ss_pred h
Confidence 3
No 86
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=89.90 E-value=0.17 Score=36.77 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=25.7
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVV 29 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~ 29 (231)
+.++|||+++..|++|+.+.++|++.+-
T Consensus 75 g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 75 SWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999998885
No 87
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=89.36 E-value=0.18 Score=37.17 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=25.4
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVV 29 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~ 29 (231)
+.++|+|+++..|++|+.+.++|++.+-
T Consensus 75 g~~~f~E~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 75 SVLLFDESLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999998874
No 88
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=89.26 E-value=0.84 Score=32.68 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 164 LSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 164 ~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
...+.+.++++.+-|++++..-++|+.+.+.|+.++....|
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 34567899999999999999999999999999998877655
No 89
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=89.14 E-value=12 Score=34.68 Aligned_cols=39 Identities=8% Similarity=-0.048 Sum_probs=19.5
Q ss_pred ehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhh
Q 026867 160 IFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYA 198 (231)
Q Consensus 160 ~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l 198 (231)
...-..|+-+.++|.+.-.-.++....++++.++++..+
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 334446777777777654334444444444444444333
No 90
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=88.60 E-value=9 Score=32.09 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccc-cchhHHHHHHHHHhHHHHH
Q 026867 63 GGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRL-KTDVALVSVVLSGFFGSSF 141 (231)
Q Consensus 63 G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~lgv~~~~i 141 (231)
-.++.+.+.++--...-+-|.+..... +...+.++..+++.++..+.=. |+. .+..+|..+...|+ +...
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~RP-------wr~r~~~~~~~~~~~yGv-sLg~ 83 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVG-AAGVTALRLAIAALILLALFRP-------WRRRLSKPQRLALLAYGV-SLGG 83 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccC-hhhHHHHHHHHHHHHHHHHhhH-------HHhccChhhhHHHHHHHH-HHHH
Confidence 456667777766666677777666666 8888999988888876543321 221 12257888888898 5677
Q ss_pred HHHHHHHHhhcCCceeeeehhchHHHHHHHH
Q 026867 142 STLVHTWGLHLKGPVYIAIFKPLSIAIAAIM 172 (231)
Q Consensus 142 ~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~ 172 (231)
-+.+++.++++++-..+-.+.++.|+.-.++
T Consensus 84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~~ 114 (292)
T COG5006 84 MNLLFYLSIERIPLGIAVAIEFTGPLAVALL 114 (292)
T ss_pred HHHHHHHHHHhccchhhhhhhhccHHHHHHH
Confidence 7888999999999999999999999876553
No 91
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=87.68 E-value=0.11 Score=43.32 Aligned_cols=136 Identities=14% Similarity=0.120 Sum_probs=93.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhH
Q 026867 59 NWVTGGFLLIAQCLLNSIWYILQAHIIKIY-PAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFF 137 (231)
Q Consensus 59 ~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~ 137 (231)
..++|..++-.-.+|-......+..+.++. +.|...++..+..-+++-.+.+.+.-. .. ...|...+.++.+
T Consensus 15 k~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~---~~----~~~~~hYilla~~ 87 (336)
T KOG2766|consen 15 KTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK---YI----KAKWRHYILLAFV 87 (336)
T ss_pred hhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH---HH----HHHHHHhhheeEE
Confidence 344555555444444455555555655553 336666666666556666666665321 11 1234455555553
Q ss_pred HHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 138 GSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 138 ~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
-+=+.++..++.|+.+-+.+.++-.-..+..++++|++++-+..++++.|.++.+.|+.++...
T Consensus 88 -DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 88 -DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred -eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 4567777888899999888888888888889999999999999999999999999998887643
No 92
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=87.51 E-value=4.6 Score=34.67 Aligned_cols=122 Identities=14% Similarity=0.211 Sum_probs=80.1
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCccc-c-cccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeee
Q 026867 82 AHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSA-W-RLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIA 159 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s 159 (231)
+...+.++-|+-.+..++..=...............+. . +..+......+.-.|+ +++.=-.+-++++++.+.+.-+
T Consensus 36 ~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtlSlYT 114 (349)
T KOG1443|consen 36 KWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTLSLYT 114 (349)
T ss_pred hhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeeeeeee
Confidence 33344454466666666554433333332222221111 1 1111112222233444 5667778889999999999999
Q ss_pred ehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 160 IFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 160 ~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
+.-+..+++-.+++.++-=|++++....-..+|-+|+++..+++-
T Consensus 115 M~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT 159 (349)
T KOG1443|consen 115 MTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST 159 (349)
T ss_pred eccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence 999999999999999988899999999999999999999877654
No 93
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.50 E-value=1 Score=38.04 Aligned_cols=110 Identities=13% Similarity=0.144 Sum_probs=77.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcC-----CcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhc
Q 026867 89 PAELVVVSLYLLCASIISVPACLMAEQ-----DLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKP 163 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~ 163 (231)
+.|.-++.++|+....++..+...... .++..+... ....-+.=+.+ .-...-..-++.+++.+.+.--.--.
T Consensus 59 d~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl-~t~r~vlplsv-Vfi~mI~fnnlcL~yVgVaFYyvgRs 136 (347)
T KOG1442|consen 59 DAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDL-ATARQVLPLSV-VFILMISFNNLCLKYVGVAFYYVGRS 136 (347)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccH-HHHHhhcchhh-eeeeehhccceehhhcceEEEEeccc
Confidence 348888999999888888777765422 111221111 11111111111 11223355688899999999999999
Q ss_pred hHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhe
Q 026867 164 LSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 164 ~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~ 200 (231)
+..++.+++.|++++++-+..-..++.+|+.|..+-.
T Consensus 137 LttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 137 LTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred hhhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence 9999999999999999999999999999999988754
No 94
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=86.28 E-value=0.82 Score=38.69 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhee
Q 026867 138 GSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 138 ~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~ 201 (231)
+-..+-.+++.++....++..-+.--...++..+++.-+++.++...+|+|...+.+|+.++-.
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 3445556777777777777666666667889999999999999999999999999999888754
No 95
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=86.04 E-value=23 Score=31.03 Aligned_cols=24 Identities=13% Similarity=-0.067 Sum_probs=10.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Q 026867 128 LVSVVLSGFFGSSFSTLVHTWGLH 151 (231)
Q Consensus 128 ~~~l~~lgv~~~~i~~~~~~~~l~ 151 (231)
++.+...+.+...+++.+....-+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~ 85 (385)
T PF03547_consen 62 LWFIPVFAFIIFILGLLLGFLLSR 85 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433444444445555544444433
No 96
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.88 E-value=20 Score=30.95 Aligned_cols=117 Identities=19% Similarity=0.282 Sum_probs=76.2
Q ss_pred HHHHHHHHhhc--ChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHH--HHHHHHhHHHHHHHHHHHHHhhcC
Q 026867 78 YILQAHIIKIY--PAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALV--SVVLSGFFGSSFSTLVHTWGLHLK 153 (231)
Q Consensus 78 ~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~lgv~~~~i~~~~~~~~l~~~ 153 (231)
.+..|.....+ +..+.....|.+.+.+.....-...--+.++........|. .+++.+- .+.=.+++|++
T Consensus 28 ~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~------i~t~~~slk~l 101 (314)
T KOG1444|consen 28 TVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGM------LFTGSKSLKYL 101 (314)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHH------HHHcccccccc
Confidence 34444444444 33455566888877776665554422122222111112232 2333322 23335788999
Q ss_pred CceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhe
Q 026867 154 GPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 154 ~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~ 200 (231)
+.....++-...|+..++...+++|.+++...+.....+++|..+..
T Consensus 102 nVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 102 NVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred CchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999888866654
No 97
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=82.88 E-value=1.8 Score=30.95 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCchhhhHHHHHHHHHHhhhhe
Q 026867 170 AIMGVVFLGDTLHLGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 170 ~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~ 200 (231)
+.++++.++|++.+....|.++++.+++.+.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 3467789999999999999999998887653
No 98
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=82.17 E-value=0.89 Score=38.81 Aligned_cols=129 Identities=7% Similarity=-0.007 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcc-----------cccccchhHHHHHHHHHh
Q 026867 68 IAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLS-----------AWRLKTDVALVSVVLSGF 136 (231)
Q Consensus 68 l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~lgv 136 (231)
+++.+||+.+...+|...|+...+ ....|=+.++.+...++..+..++.. +..+.....+..-+.-|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 567899999999999887765422 22444445554444444444332111 111222123333333344
Q ss_pred HHHHHHHHHHHHHhhcCCceeeeehhc-hHHHHHHHHHHHHhCCCchh--hhHHHHHHHHHHhhhh
Q 026867 137 FGSSFSTLVHTWGLHLKGPVYIAIFKP-LSIAIAAIMGVVFLGDTLHL--GSVIGAIIICIGFYAV 199 (231)
Q Consensus 137 ~~~~i~~~~~~~~l~~~~~~~~s~~~~-~~P~~a~i~~~~~~gE~~~~--~~ilG~~lii~Gv~l~ 199 (231)
.--++..+..+++...+-+.+-.+.. +.-+.++++.|+ +..+.+. ..+.|..++++++++-
T Consensus 81 -vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lg 144 (336)
T PF07168_consen 81 -VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILG 144 (336)
T ss_pred -hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHH
Confidence 45678888888888888766655442 233345566664 4555553 4456888887776664
No 99
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=79.54 E-value=7.2 Score=27.84 Aligned_cols=45 Identities=24% Similarity=0.183 Sum_probs=37.9
Q ss_pred ehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 160 IFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 160 ~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
.+.=.....+.++.+++=|.+++..-++|.++.++|+.++....|
T Consensus 63 AYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 63 AYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 445566778999999999999999999999999999887776654
No 100
>PF15102 TMEM154: TMEM154 protein family
Probab=77.80 E-value=2.9 Score=31.76 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhheecCccccCc
Q 026867 186 VIGAIIICIGFYAVLWGKANEEGT 209 (231)
Q Consensus 186 ilG~~lii~Gv~l~~~~~~~~~~~ 209 (231)
+++++++++.++++.+.|||+.+.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCC
Confidence 445555566666666666655544
No 101
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=77.80 E-value=6.1 Score=28.37 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCceeeeehh-chHHHHHHHHHHHHhCCCc-hhhhHHHHHHHHHHhhhhe
Q 026867 141 FSTLVHTWGLHLKGPVYIAIFK-PLSIAIAAIMGVVFLGDTL-HLGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 141 i~~~~~~~~l~~~~~~~~s~~~-~~~P~~a~i~~~~~~gE~~-~~~~ilG~~lii~Gv~l~~ 200 (231)
.+-.+|+..+++.+-+.+..+. .+.-.+..+.|+. +||.. ....++|..++++|++++.
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~-LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKA-LGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHH-hccccccceeehhhhHHhhhhhhee
Confidence 4557888999999988877665 4566778888885 66655 4567899999999998864
No 102
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=77.65 E-value=4.2 Score=30.48 Aligned_cols=10 Identities=20% Similarity=0.653 Sum_probs=4.2
Q ss_pred HHHHHHHHhh
Q 026867 188 GAIIICIGFY 197 (231)
Q Consensus 188 G~~lii~Gv~ 197 (231)
|..+++.|++
T Consensus 92 g~~~~~~G~~ 101 (136)
T PF08507_consen 92 GLLLFLVGVI 101 (136)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 103
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=76.06 E-value=39 Score=27.09 Aligned_cols=35 Identities=11% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCchhhhHHHHHHHH--HHhhhheecCc
Q 026867 170 AIMGVVFLGDTLHLGSVIGAIIIC--IGFYAVLWGKA 204 (231)
Q Consensus 170 ~i~~~~~~gE~~~~~~ilG~~lii--~Gv~l~~~~~~ 204 (231)
-.+|..++++-.=+..+.|..+.+ .|.+...++++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~~~ 169 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARRER 169 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 445888888887788888888775 46555554443
No 104
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=74.69 E-value=41 Score=26.74 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=38.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCch----hhhHHHHHHHHHHhhhhe
Q 026867 129 VSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLH----LGSVIGAIIICIGFYAVL 200 (231)
Q Consensus 129 ~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~----~~~ilG~~lii~Gv~l~~ 200 (231)
.+++..-...+.+....-....+..+ --......=+.+++.|++++.++.. ...++|+-+++.|.....
T Consensus 104 ~~lia~~~i~~GI~ri~~~~~~~~~~---G~~w~ii~Gvl~ii~g~ill~~P~~~~~~l~~llGI~li~~G~~~i~ 176 (185)
T COG3247 104 TYLIAIWFIASGILRIVVAFRLRSLP---GWWWMIISGVLGIIAGLILLFNPVASAWILGLLLGIELIFQGIALIA 176 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccC---CcHHHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444333333 3444666667788888888777443 244668888887766553
No 105
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=74.64 E-value=3.6 Score=25.34 Aligned_cols=20 Identities=20% Similarity=-0.011 Sum_probs=11.3
Q ss_pred HHHhhhheecCccccCccCC
Q 026867 193 CIGFYAVLWGKANEEGTTYS 212 (231)
Q Consensus 193 i~Gv~l~~~~~~~~~~~~~~ 212 (231)
+.|+.++...|++..+.+.+
T Consensus 15 lLg~~I~~~~K~ygYkht~d 34 (50)
T PF12606_consen 15 LLGLSICTTLKAYGYKHTVD 34 (50)
T ss_pred HHHHHHHHHhhccccccccC
Confidence 35666666666666555433
No 106
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=74.47 E-value=56 Score=28.18 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhchHHHHH
Q 026867 90 AELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIA 169 (231)
Q Consensus 90 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a 169 (231)
++.-..+.+-+.+.++.....-..... .....-|+...++++ ...++-.+-+.++|+.+=-+-.+--..--+-.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~-----~~~~apl~~y~~is~-tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPV 123 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKE-----LSGVAPLYKYSLISF-TNTLSSWCGYEALKYVSYPTQTLAKSCKMIPV 123 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccc-----CCCCCchhHHhHHHH-HhhcchHHHHHHHHhccchHHHHHHHhhhhHH
Confidence 466677777666666553333221111 111123555556665 56688889999999997444444444444445
Q ss_pred HHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccc
Q 026867 170 AIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANE 206 (231)
Q Consensus 170 ~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~ 206 (231)
++++.++++.+.++..++-+++|-.|+-+....+...
T Consensus 124 mlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 124 MLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 7899999999999999999999999998887665543
No 107
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.56 E-value=29 Score=24.55 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCchhhhHHHHHHHHHHhhhhee
Q 026867 170 AIMGVVFLGDTLHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 170 ~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~ 201 (231)
+.++++.++|++.+..+.|..++..|++.+.+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 34788999999999999999999999887653
No 108
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=70.56 E-value=3.2 Score=33.54 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=28.8
Q ss_pred ceeeeehhchHHHHHHHHHHHHhCCCch-hhhHHHHHHH-HHHhhhhe
Q 026867 155 PVYIAIFKPLSIAIAAIMGVVFLGDTLH-LGSVIGAIII-CIGFYAVL 200 (231)
Q Consensus 155 ~~~~s~~~~~~P~~a~i~~~~~~gE~~~-~~~ilG~~li-i~Gv~l~~ 200 (231)
+...+.++.+.|..+..+|..+-+--.. ..+|+|+++. +.|+.+..
T Consensus 33 ~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 33 NLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 3445555667888888888875543323 3567765554 47887764
No 109
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=69.67 E-value=20 Score=32.75 Aligned_cols=47 Identities=4% Similarity=0.041 Sum_probs=30.5
Q ss_pred eeehhchHHHHHHHHHHHHhCC-----CchhhhHHHHHHHHHHhhhheecCc
Q 026867 158 IAIFKPLSIAIAAIMGVVFLGD-----TLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 158 ~s~~~~~~P~~a~i~~~~~~gE-----~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
..++..+.-+.-.++.++=-++ .++..|++..+++++|+++..+.+|
T Consensus 226 f~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 226 FGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555556665542222 2788999999999999877755433
No 110
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=68.57 E-value=6.3 Score=30.64 Aligned_cols=11 Identities=36% Similarity=0.431 Sum_probs=5.3
Q ss_pred Ccccccccccc
Q 026867 217 TPLLQSLKVED 227 (231)
Q Consensus 217 ~~~~~~~~~~~ 227 (231)
+||.++++|||
T Consensus 142 ~pL~~ddedeD 152 (163)
T PF06679_consen 142 APLEEDDEDED 152 (163)
T ss_pred cccCCCccccc
Confidence 57744433333
No 111
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=68.16 E-value=7.3 Score=33.05 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=53.3
Q ss_pred HHHHHHHhhcC-CceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccccCc
Q 026867 143 TLVHTWGLHLK-GPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEEGT 209 (231)
Q Consensus 143 ~~~~~~~l~~~-~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~~~ 209 (231)
..+-+++++.- +--.--++-.-.++..+++++++.|.+.+..|+...+++-+|+++....+.++-+.
T Consensus 78 nv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 78 NVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34556666643 44555667778899999999999999999999999999999999998777665443
No 112
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=67.33 E-value=4 Score=30.98 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=32.3
Q ss_pred hcCCceeeeehhchHHHHHHHHHHHH-----hCCCchhhhHHHHHHH-HHHhhhheecCccccC
Q 026867 151 HLKGPVYIAIFKPLSIAIAAIMGVVF-----LGDTLHLGSVIGAIII-CIGFYAVLWGKANEEG 208 (231)
Q Consensus 151 ~~~~~~~~s~~~~~~P~~a~i~~~~~-----~gE~~~~~~ilG~~li-i~Gv~l~~~~~~~~~~ 208 (231)
.--+..+.+.+.|+.|+++++++.++ ++|. ...+|+++- ..|.++..+..||.++
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~---~~~~~~~lg~~l~fl~~r~ysRkl~~ 130 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSEL---IVIFGAFLGLALGFLLARRYSRKLAK 130 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455566778888898888877665 4442 333344333 4566666555555443
No 113
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=65.43 E-value=30 Score=21.51 Aligned_cols=46 Identities=9% Similarity=0.305 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026867 13 AKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQAHIIKI 87 (231)
Q Consensus 13 ~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~~~~~~ 87 (231)
..++|..+.++|++++. +.| .|.+..+++...+|.+...-|+..+.
T Consensus 4 v~v~G~~lv~~Gii~~~-lPG----------------------------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLP-LPG----------------------------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhhHHHHHHHHHHHhhc-CCC----------------------------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45788999999988885 322 26677778888888888877776543
No 114
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=64.44 E-value=98 Score=27.00 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=12.7
Q ss_pred chhhhHHHHHHHHHHhhhhee
Q 026867 181 LHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 181 ~~~~~ilG~~lii~Gv~l~~~ 201 (231)
......+++++.+.++++..+
T Consensus 368 ~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 368 WPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777666533
No 115
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=63.98 E-value=97 Score=26.80 Aligned_cols=37 Identities=11% Similarity=-0.063 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 168 IAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 168 ~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
...+.|++.-.-..+...++++++.++++.+....++
T Consensus 354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344555443223444555555555556555443333
No 116
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=60.54 E-value=80 Score=28.33 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=4.6
Q ss_pred HHHHhhcCCce
Q 026867 146 HTWGLHLKGPV 156 (231)
Q Consensus 146 ~~~~l~~~~~~ 156 (231)
+....+..++.
T Consensus 355 ~~~~~~~~~~~ 365 (455)
T TIGR00892 355 FEVLMDLVGAQ 365 (455)
T ss_pred HHHHHHHhhHH
Confidence 33334444443
No 117
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=58.82 E-value=99 Score=25.20 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=40.9
Q ss_pred cchhHHHHHHHHHhHH--HHHHHHHHHHHhhcCCc----------eeeeehhchHHHHHHHHHH---HHhCCC----ch-
Q 026867 123 KTDVALVSVVLSGFFG--SSFSTLVHTWGLHLKGP----------VYIAIFKPLSIAIAAIMGV---VFLGDT----LH- 182 (231)
Q Consensus 123 ~~~~~~~~l~~lgv~~--~~i~~~~~~~~l~~~~~----------~~~s~~~~~~P~~a~i~~~---~~~gE~----~~- 182 (231)
.+..+|..+..+.++. -..|+..+. ....+. ...+...+..-+.++..|+ ..+.+. .+
T Consensus 94 ySlHSwlGl~t~~L~~lQ~~~Gf~~fl--~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~ 171 (214)
T cd08764 94 YSLHSWLGLTAVILFSLQWVGGFVSFL--FPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNLPA 171 (214)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCh
Confidence 3446787766665543 223332222 222221 1234555566666666665 233332 11
Q ss_pred ---hhhHHHHHHHHHHhhhheecCc
Q 026867 183 ---LGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 183 ---~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
..-.+|..+++.|++++..-.+
T Consensus 172 e~~l~N~~gl~~~~fg~~V~~~~~~ 196 (214)
T cd08764 172 EGVLGNFIGIVLVIFGGLVVYLVTE 196 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2447899999988776544333
No 118
>PRK10489 enterobactin exporter EntS; Provisional
Probab=58.78 E-value=1.3e+02 Score=26.39 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHhhhheecC
Q 026867 185 SVIGAIIICIGFYAVLWGK 203 (231)
Q Consensus 185 ~ilG~~lii~Gv~l~~~~~ 203 (231)
.+.|+...+.+++.....+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 382 SASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3445555555655544433
No 119
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=57.15 E-value=1.4e+02 Score=26.28 Aligned_cols=180 Identities=15% Similarity=0.117 Sum_probs=94.7
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 026867 8 SRITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQAHII-- 85 (231)
Q Consensus 8 ek~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~~~~-- 85 (231)
++-...-++|+.++++|+++.. ..|. .....++ ....+.+.-.|.++++++.++=|++..-...-.
T Consensus 131 ~~~g~~vL~Gv~v~LiGIai~g-~AG~-~Ke~~~~----------~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi 198 (344)
T PF06379_consen 131 TPSGQIVLLGVAVCLIGIAICG-KAGS-MKEKELG----------EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPI 198 (344)
T ss_pred CCCchhhhhHHHHHHHHHHHHh-HHHH-hhhhhhc----------cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 4445678899999999999886 3221 1100000 012234567899999999888777665543211
Q ss_pred -----hhcChhH----HHHHHHHHHHHHHHHHHHHhhc---CCcc---cccc--c-chhHHHHHHHHHhHHHHHHHHHHH
Q 026867 86 -----KIYPAEL----VVVSLYLLCASIISVPACLMAE---QDLS---AWRL--K-TDVALVSVVLSGFFGSSFSTLVHT 147 (231)
Q Consensus 86 -----~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~---~~~~---~~~~--~-~~~~~~~l~~lgv~~~~i~~~~~~ 147 (231)
+...+++ ......+.-|.+.-...+++.. ++.+ +... + .......-...|+ -=..++++|-
T Consensus 199 ~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg 277 (344)
T PF06379_consen 199 HEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYG 277 (344)
T ss_pred HHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 1111111 1222223444445555554431 2221 1111 0 0112222222222 2234556666
Q ss_pred HHhhcCCce----eeeehhchHHHHHHHHHHHHhCC------CchhhhHHHHHHHHHHhhhhee
Q 026867 148 WGLHLKGPV----YIAIFKPLSIAIAAIMGVVFLGD------TLHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 148 ~~l~~~~~~----~~s~~~~~~P~~a~i~~~~~~gE------~~~~~~ilG~~lii~Gv~l~~~ 201 (231)
.+-.+.++. --.+.+.+..+++-++|++ ++| +.-...++|.++++.++.++=+
T Consensus 278 ~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 278 MGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 666666643 3345667788888999986 555 2234557898888888776643
No 120
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=57.03 E-value=1.4e+02 Score=26.73 Aligned_cols=52 Identities=4% Similarity=-0.088 Sum_probs=25.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCC-ceeeeehhchHHHHHHHHHHHHhC
Q 026867 127 ALVSVVLSGFFGSSFSTLVHTWGLHLKG-PVYIAIFKPLSIAIAAIMGVVFLG 178 (231)
Q Consensus 127 ~~~~l~~lgv~~~~i~~~~~~~~l~~~~-~~~~s~~~~~~P~~a~i~~~~~~g 178 (231)
....+.-++.....+.|.+...+.-|.+ +..-.......+..+.++..+.+.
T Consensus 350 ~~~~l~~~~~~~~l~~y~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (435)
T PRK10435 350 LFGELTGIAVLLTMLPYFYSCVDLIRFEGVNIRNFVSLICSVLGCVFCFIALM 402 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666566666666555543332 221122234555566666555544
No 121
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=55.05 E-value=93 Score=26.08 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=20.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026867 59 NWVTGGFLLIAQCLLNSIWYILQAHIIKI 87 (231)
Q Consensus 59 ~~~~G~l~~l~aa~~~a~~~v~~~~~~~~ 87 (231)
..+.|.++++++.+.++...+=..+..++
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 46788888888888888766555554333
No 122
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=54.67 E-value=93 Score=23.66 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCccccCc
Q 026867 141 FSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKANEEGT 209 (231)
Q Consensus 141 i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~~~~~ 209 (231)
.......+.+++.+..+.++-.. .-...+++.+--.+++.++.|..++..=+.++...++.++|+
T Consensus 60 ~T~G~~~~lm~~kgi~rm~lG~~----vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~QRS 124 (144)
T PF01350_consen 60 MTLGVFWFLMRRKGIGRMSLGML----VMAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPEPGKQRS 124 (144)
T ss_pred HHHHHHHhhhcCCCcchhhHHHH----HHHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccCCCCcCC
Confidence 34455556667777777665443 334456667777889999999999998888888777766665
No 123
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=54.63 E-value=1.7e+02 Score=26.60 Aligned_cols=119 Identities=9% Similarity=-0.022 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHH
Q 026867 63 GGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFS 142 (231)
Q Consensus 63 G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~ 142 (231)
|.++..+.-+++-+.-++.|+ +. +|+.+....+..+...++.+++- |+ ... .+.+++..+... .-
T Consensus 301 giLFI~LTF~~fflfE~~~~~---~i-HpiQY~LVGlAl~lFYlLLLSlS-Eh----i~F----~~AYliAa~a~i--~L 365 (430)
T PF06123_consen 301 GILFIGLTFLAFFLFELLSKL---RI-HPIQYLLVGLALVLFYLLLLSLS-EH----IGF----NLAYLIAALACI--GL 365 (430)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---cc-cHHHHHHHHHHHHHHHHHHHHHH-hh----hch----HHHHHHHHHHHH--HH
Confidence 556655555555555555543 33 36777766655555555444432 32 111 244444443323 33
Q ss_pred HHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhh
Q 026867 143 TLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAV 199 (231)
Q Consensus 143 ~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~ 199 (231)
..+|..++-+-.-.-......+.-+++.+.+.+ --|... ..+|.++.++-+.++
T Consensus 366 i~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lL-q~EdyA--LL~GSl~LF~iLa~v 419 (430)
T PF06123_consen 366 ISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLL-QSEDYA--LLMGSLLLFIILALV 419 (430)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HhhhHH--HHHHHHHHHHHHHHH
Confidence 344444444444444445556666777777764 345443 344555554433333
No 124
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=53.77 E-value=23 Score=19.27 Aligned_cols=19 Identities=16% Similarity=0.273 Sum_probs=10.2
Q ss_pred chhhhHHHHHHHHHHhhhh
Q 026867 181 LHLGSVIGAIIICIGFYAV 199 (231)
Q Consensus 181 ~~~~~ilG~~lii~Gv~l~ 199 (231)
-++..++|.+++..+.++.
T Consensus 10 ~~~~~~~G~~l~~~~~~~~ 28 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGLLL 28 (34)
T ss_pred cHHHHHHHHHHHHHHHHHh
Confidence 3456677775555544443
No 125
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=53.33 E-value=1.2e+02 Score=27.53 Aligned_cols=45 Identities=11% Similarity=0.038 Sum_probs=25.5
Q ss_pred ehhchHHHHHHHHHHHH-hCCCchhhhHHHHHHHHHHhhhheecCcc
Q 026867 160 IFKPLSIAIAAIMGVVF-LGDTLHLGSVIGAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 160 ~~~~~~P~~a~i~~~~~-~gE~~~~~~ilG~~lii~Gv~l~~~~~~~ 205 (231)
......|+++.++..++ +... ......|.+++..|+.+....+|+
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 393 RKALIVGVIACVYSIWLLYAAG-LKYLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666555443 3332 234566888888887665554443
No 126
>PRK10263 DNA translocase FtsK; Provisional
Probab=53.08 E-value=2.9e+02 Score=28.94 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=9.3
Q ss_pred hhhhHHHHHHHHHHHH
Q 026867 13 AKIIGAIVSISGALLV 28 (231)
Q Consensus 13 ~~~~g~~i~~~G~~li 28 (231)
....++++.++++.++
T Consensus 23 ~E~~gIlLlllAlfL~ 38 (1355)
T PRK10263 23 LEALLILIVLFAVWLM 38 (1355)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666665554
No 127
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=52.52 E-value=8.3 Score=28.47 Aligned_cols=17 Identities=18% Similarity=0.040 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhheecCc
Q 026867 188 GAIIICIGFYAVLWGKA 204 (231)
Q Consensus 188 G~~lii~Gv~l~~~~~~ 204 (231)
|++++++.+..+.++++
T Consensus 76 GvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444443333333333
No 128
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=52.51 E-value=22 Score=25.00 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHhhhheec
Q 026867 184 GSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 184 ~~ilG~~lii~Gv~l~~~~ 202 (231)
+.++|+.+++-..+.+.|+
T Consensus 48 MIf~Gi~lMlPAav~ivWR 66 (96)
T PF07214_consen 48 MIFVGIGLMLPAAVNIVWR 66 (96)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456777776554444444
No 129
>PRK11469 hypothetical protein; Provisional
Probab=51.67 E-value=8.2 Score=30.75 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=29.2
Q ss_pred eehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHH-HHhhhhe
Q 026867 159 AIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIIC-IGFYAVL 200 (231)
Q Consensus 159 s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii-~Gv~l~~ 200 (231)
+.++.+.|..+...|..+-+-....-.|+|..+.+ .|..++.
T Consensus 44 g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 44 GAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557888888888887655444455688776654 7888775
No 130
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=51.42 E-value=84 Score=28.24 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=11.9
Q ss_pred ccccchhhhHHHHHHHHHHHHH
Q 026867 8 SRITQAKIIGAIVSISGALLVV 29 (231)
Q Consensus 8 ek~~~~~~~g~~i~~~G~~li~ 29 (231)
-+...|-++..++..+|.+++.
T Consensus 86 v~y~~Ri~~~~~l~~~g~l~va 107 (402)
T PF02487_consen 86 VPYWIRILICVALSAAGMLLVA 107 (402)
T ss_pred ccchHHHHHHHHHHHHHHhhee
Confidence 3444555555566666655554
No 131
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=50.92 E-value=1.9e+02 Score=27.25 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHH
Q 026867 60 WVTGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASI 104 (231)
Q Consensus 60 ~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i 104 (231)
+..=.++.++++++.-.|.+..|+ .++.|.+.......+++|.+
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~lP~s~llil~GlllG~i 51 (559)
T TIGR00840 8 PYEFILWILLASLAKIGFHLTHKV-IRAVPESVLLIVYGLLVGGI 51 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh-cccCCHHHHHHHHHHHHHHH
Confidence 344567888888888888877776 45566555555555555543
No 132
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=49.68 E-value=2.1e+02 Score=26.15 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhCCCchhhh-HHHHHHHHHHhhhheecCc
Q 026867 164 LSIAIAAIMGVVFLGDTLHLGS-VIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 164 ~~P~~a~i~~~~~~gE~~~~~~-ilG~~lii~Gv~l~~~~~~ 204 (231)
+.|+++.+ +++.++-...... .-|++.+++|+++....|-
T Consensus 168 l~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 168 LAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred hHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44555444 6655554333333 4477777788877665444
No 133
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=49.49 E-value=7.4 Score=29.01 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=27.8
Q ss_pred ceeeeehhchHHHHHHHHHHHHhCCCc---hhhhHHHHHHHH-HHhhhheecCc
Q 026867 155 PVYIAIFKPLSIAIAAIMGVVFLGDTL---HLGSVIGAIIIC-IGFYAVLWGKA 204 (231)
Q Consensus 155 ~~~~s~~~~~~P~~a~i~~~~~~gE~~---~~~~ilG~~lii-~Gv~l~~~~~~ 204 (231)
..+++.+.|+.|+.+++.+.++-. .+ .+..++++++.+ .|..++.+..+
T Consensus 67 ~~~aa~l~Y~lPll~li~g~~l~~-~~~~~e~~~~l~~l~~l~~~~~~~~~~~~ 119 (135)
T PF04246_consen 67 LLKAAFLVYLLPLLALIAGAVLGS-YLGGSELWAILGGLLGLALGFLILRLFDR 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788889998888876532 22 444444444444 44444443333
No 134
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=48.47 E-value=5.7 Score=33.67 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCceeeeehhchH
Q 026867 139 SSFSTLVHTWGLHLKGPVYIAIFKPLS 165 (231)
Q Consensus 139 ~~i~~~~~~~~l~~~~~~~~s~~~~~~ 165 (231)
-+++-++|.+.+++.+++.-.++.+.-
T Consensus 118 LaL~vW~Ym~lLr~~GAs~WtiLaFcL 144 (381)
T PF05297_consen 118 LALGVWFYMWLLRELGASFWTILAFCL 144 (381)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345667777788999998877766543
No 135
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=48.45 E-value=1.6e+02 Score=24.61 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 026867 72 LLNSIWYILQAHIIKIYP 89 (231)
Q Consensus 72 ~~~a~~~v~~~~~~~~~~ 89 (231)
+.+.+..+...+..++..
T Consensus 41 ~~~~~~~~~~g~l~dr~g 58 (379)
T TIGR00881 41 IAYGISKFVMGSVSDRSN 58 (379)
T ss_pred HHHHhhhhhhhHHHHhhC
Confidence 334444444444444443
No 136
>PRK11010 ampG muropeptide transporter; Validated
Probab=47.53 E-value=2.2e+02 Score=25.88 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=24.1
Q ss_pred hhcCCceeeeehhchHHHHHHHH----HHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 150 LHLKGPVYIAIFKPLSIAIAAIM----GVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 150 l~~~~~~~~s~~~~~~P~~a~i~----~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
-++.+++..+.++....+-..+. |++.-.-..+....+..++.+.|+++..+-
T Consensus 346 ~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 346 NKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555443333322 333221123344555666666666665433
No 137
>COG1971 Predicted membrane protein [Function unknown]
Probab=47.23 E-value=17 Score=28.99 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=29.2
Q ss_pred eehhchHHHHHHHHHHHHhCCCchhhhHHHHHHH-HHHhhhhe
Q 026867 159 AIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIII-CIGFYAVL 200 (231)
Q Consensus 159 s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~li-i~Gv~l~~ 200 (231)
+.++...|+.+...+.++=+-.-.+..|+|.++. +.|+.++.
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~ 86 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMII 86 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888765444457777776655 48988764
No 138
>COG4854 Predicted membrane protein [Function unknown]
Probab=47.03 E-value=51 Score=23.90 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=36.0
Q ss_pred cccccch--hhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026867 7 RSRITQA--KIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQAHI 84 (231)
Q Consensus 7 kek~~~~--~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~~~ 84 (231)
.||-|++ |++.+..++.|++++. +++|. ....+..+-+..+..-.+|..+..+.
T Consensus 65 se~aSr~TiqV~~is~Al~gavl~a-~knP~-----------------------~~~a~~al~~A~ca~ivLy~~fY~YY 120 (126)
T COG4854 65 SERASRRTIQVFSISAALGGAVLLA-LKNPL-----------------------HTNAAFALEFAVCAVIVLYLAFYMYY 120 (126)
T ss_pred HHhhhheeEEEEEehHHHHHHHHHH-hcCcc-----------------------ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555554 7888999999999997 44321 12245556665565666666666665
Q ss_pred Hhh
Q 026867 85 IKI 87 (231)
Q Consensus 85 ~~~ 87 (231)
.++
T Consensus 121 srr 123 (126)
T COG4854 121 SRR 123 (126)
T ss_pred HHH
Confidence 554
No 139
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=45.08 E-value=3.1e+02 Score=26.84 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHH
Q 026867 70 QCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVP 108 (231)
Q Consensus 70 aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 108 (231)
..+......++...+..+.. .-......++.+++.+++
T Consensus 604 ~~l~~i~G~il~g~L~Dr~G-Rr~~l~~~~~lsai~~ll 641 (742)
T TIGR01299 604 GTLAVLPGNIVSALLMDKIG-RLRMLAGSMVLSCISCFF 641 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444 222333334444444433
No 140
>PRK11715 inner membrane protein; Provisional
Probab=43.70 E-value=2.6e+02 Score=25.52 Aligned_cols=119 Identities=8% Similarity=0.012 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHH
Q 026867 63 GGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFS 142 (231)
Q Consensus 63 G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~ 142 (231)
|.++..+.-+++-++-++.|+ +. +|+.+....+..+...++.+++- |+ ... .+.+++..+.....++
T Consensus 307 giLFI~LTF~~fFlfE~~~~~---~i-HpiQYlLVGlAl~lFYLLLLSlS-EH----igF----~~AYliAa~a~v~li~ 373 (436)
T PRK11715 307 AILFIALTFAAFFLFELLKKL---RI-HPVQYLLVGLALVLFYLLLLSLS-EH----IGF----TLAYLIAALACVLLIG 373 (436)
T ss_pred HHHHHHHHHHHHHHHHHhcCc---ee-cHHHHHHHHHHHHHHHHHHHHHH-hh----hch----HHHHHHHHHHHHHHHH
Confidence 555555555555555555443 33 37777776666555555554442 32 111 2334444333333333
Q ss_pred HHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhh
Q 026867 143 TLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAV 199 (231)
Q Consensus 143 ~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~ 199 (231)
+|..++-+-.-.-......+.-+++++.+.+ --|... ..+|.++.++.+.++
T Consensus 374 --~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~lL-q~EDyA--LL~GSllLF~~La~v 425 (436)
T PRK11715 374 --FYLSAVLRSWKRGLLFAAALAALYGVLYGLL-QSEDYA--LLLGSLLLFAVLALV 425 (436)
T ss_pred --HHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HHhHHH--HHHHHHHHHHHHHHH
Confidence 3333333333333334445556667776664 335433 344555555433333
No 141
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=42.57 E-value=24 Score=20.62 Aligned_cols=18 Identities=33% Similarity=0.831 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhheecCcc
Q 026867 188 GAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 188 G~~lii~Gv~l~~~~~~~ 205 (231)
|.++++.++++..+++|+
T Consensus 22 ~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHHHHHhheEEecc
Confidence 455556666666555553
No 142
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=40.26 E-value=2.8e+02 Score=25.03 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=22.3
Q ss_pred hHHHHHHHHHH-HHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 164 LSIAIAAIMGV-VFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 164 ~~P~~a~i~~~-~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
..+..+.+... .++.-.. ....+|.++++.|+.+..+.+|
T Consensus 392 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 392 LIGLVALLYAVWLIYAAGL-KYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333 3333332 3567788888889877755444
No 143
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.93 E-value=13 Score=27.48 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhheecC
Q 026867 186 VIGAIIICIGFYAVLWGK 203 (231)
Q Consensus 186 ilG~~lii~Gv~l~~~~~ 203 (231)
++|++.-++|+++....-
T Consensus 70 i~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444455555444333
No 144
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=38.05 E-value=1.1e+02 Score=23.91 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 026867 61 VTGGFLLIAQCLLNSIWYIL 80 (231)
Q Consensus 61 ~~G~l~~l~aa~~~a~~~v~ 80 (231)
.+|+.+-++..=|.-....+
T Consensus 102 ~LGIfLPLITTNCaVLgvaL 121 (193)
T COG4657 102 LLGIFLPLITTNCAVLGVAL 121 (193)
T ss_pred HHHHhhhhHhhchHHHHHHH
Confidence 44554444444333333333
No 145
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.66 E-value=27 Score=22.38 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhheecCccccC
Q 026867 186 VIGAIIICIGFYAVLWGKANEEG 208 (231)
Q Consensus 186 ilG~~lii~Gv~l~~~~~~~~~~ 208 (231)
.+-..+++.|++...++++++.+
T Consensus 15 t~~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHHHhcccchhh
Confidence 34445555666665555554443
No 146
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=37.48 E-value=3.7e+02 Score=25.60 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=20.4
Q ss_pred ccccccchhhhHHHHHHHHHHHHHH
Q 026867 6 LRSRITQAKIIGAIVSISGALLVVL 30 (231)
Q Consensus 6 lkek~~~~~~~g~~i~~~G~~li~~ 30 (231)
.||++...+++|.++...|..++.+
T Consensus 232 ~~~~l~~lD~IG~~L~~~Gl~LfLl 256 (599)
T PF06609_consen 232 KREQLKELDWIGIFLFIAGLALFLL 256 (599)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3566777789999999999998863
No 147
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=37.43 E-value=3e+02 Score=24.47 Aligned_cols=120 Identities=17% Similarity=0.073 Sum_probs=54.7
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhCCcccccCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHHH--Hhh
Q 026867 10 ITQAKIIGAIVSISGALLVVLYKGPAMFLTSPSTHSKPLLQWPLCISLSNWVTGGFLLIAQCLLNSIWYILQAHI--IKI 87 (231)
Q Consensus 10 ~~~~~~~g~~i~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~~~~--~~~ 87 (231)
.++++--..++.++..+++... +.. . ...........+++.+.|+...+...-- .++
T Consensus 9 ~~~~~~~~~~~~~~a~~~~~~~-~~~-~-------------------~~~~~~~~~~~~~~~i~~~~~~~v~hAe~lA~~ 67 (366)
T PRK10599 9 KTRHKETSLIFPVLALVVLFLW-GSS-Q-------------------SLPVVIAINLLALIGILSSAFSVVRHADVLAHR 67 (366)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH-hcc-C-------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777666422 211 0 1222233344444556666665554321 234
Q ss_pred cChhHHHHHHHHHHHHHHHH-HHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcC
Q 026867 88 YPAELVVVSLYLLCASIISV-PACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLK 153 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~ 153 (231)
..+|+.........-.+=.. +.+....+. ..... .++-..-...-+..+.+|..++.=++||-
T Consensus 68 ~GeP~GtliLtlsv~~iEv~li~~~Ml~g~-~~~tl--aRDtvfa~vMi~~nGilGl~ll~GGlr~~ 131 (366)
T PRK10599 68 LGEPYGSLILSLSVVILEVSLISALMATGD-AAPTL--MRDTLYSIIMIVTGGLVGFSLLLGGRKFA 131 (366)
T ss_pred HCCChHHHHHHHHHHHHHHHHHHHHHcCCC-CCchH--HHHHHHHHHHHHhccHHHHHHHHhccccC
Confidence 44577666665554444222 222222121 11110 12222222223335566677777777664
No 148
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=37.31 E-value=37 Score=19.66 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhh
Q 026867 166 IAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYA 198 (231)
Q Consensus 166 P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l 198 (231)
|+.+.+.|.+++--+==...++|.-+|+.|+.-
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lg 33 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLG 33 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777766544444567788888887653
No 149
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=37.30 E-value=8.9 Score=29.50 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=13.9
Q ss_pred eeeeehhchHHHHHHHHHHHH
Q 026867 156 VYIAIFKPLSIAIAAIMGVVF 176 (231)
Q Consensus 156 ~~~s~~~~~~P~~a~i~~~~~ 176 (231)
.+.+.+.|+.|+++++.+..+
T Consensus 75 lkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 75 LRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666777888877766543
No 150
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=37.06 E-value=1.8e+02 Score=21.86 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHH-HHHhhhheecCc
Q 026867 126 VALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIII-CIGFYAVLWGKA 204 (231)
Q Consensus 126 ~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~li-i~Gv~l~~~~~~ 204 (231)
..+.....+.+.+.+.-|..=.++.||.+.++.+.. .-..+.+.+.++.. .+|.++- +.|.++....++
T Consensus 31 ~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~---ga~iG~IvG~f~~~-------p~G~iiG~~~Ga~l~El~~~ 100 (140)
T PF04306_consen 31 WFLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIW---GAIIGGIVGFFVLP-------PLGLIIGPFLGAFLGELLRG 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHhC
Confidence 345566667777788888888999999998888776 34456666766544 1143333 356666554444
Q ss_pred cc
Q 026867 205 NE 206 (231)
Q Consensus 205 ~~ 206 (231)
|+
T Consensus 101 ~~ 102 (140)
T PF04306_consen 101 KD 102 (140)
T ss_pred CC
Confidence 33
No 151
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=35.44 E-value=1.1e+02 Score=19.11 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHH
Q 026867 16 IGAIVSISGALLVV 29 (231)
Q Consensus 16 ~g~~i~~~G~~li~ 29 (231)
.|++..++|+.++.
T Consensus 2 ~Gil~iv~Gi~~l~ 15 (72)
T PF03729_consen 2 SGILFIVLGILLLF 15 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 46667777777765
No 152
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=35.42 E-value=2.2e+02 Score=22.46 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCchhhhHHHHHHHH--HHhhhheecCc
Q 026867 170 AIMGVVFLGDTLHLGSVIGAIIIC--IGFYAVLWGKA 204 (231)
Q Consensus 170 ~i~~~~~~gE~~~~~~ilG~~lii--~Gv~l~~~~~~ 204 (231)
-.+|..++.|-.-+....|..+.+ .|.+...++++
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~~~~ 168 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTHDLI 168 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 446888888888888888888876 46555554443
No 153
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=34.94 E-value=52 Score=24.51 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhhee
Q 026867 166 IAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 166 P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~ 201 (231)
..+..+.|.+ ...+|.+.++.+......
T Consensus 85 ~~~~~i~g~~--------~~~~G~~~i~l~~~~~~~ 112 (136)
T PF08507_consen 85 SILSIIIGLL--------LFLVGVIYIILGFFCPIK 112 (136)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHcCCC
Confidence 4555555553 346688877777665543
No 154
>PF15345 TMEM51: Transmembrane protein 51
Probab=34.31 E-value=23 Score=29.12 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhheecCccc
Q 026867 188 GAIIICIGFYAVLWGKANE 206 (231)
Q Consensus 188 G~~lii~Gv~l~~~~~~~~ 206 (231)
|+++.++.+-+..+.|||+
T Consensus 68 Gv~LLLLSICL~IR~KRr~ 86 (233)
T PF15345_consen 68 GVALLLLSICLSIRDKRRR 86 (233)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666655555544
No 155
>PF14851 FAM176: FAM176 family
Probab=33.39 E-value=1e+02 Score=23.76 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=11.9
Q ss_pred HHHHHHHhhcCCceeeeehhchHHHHH
Q 026867 143 TLVHTWGLHLKGPVYIAIFKPLSIAIA 169 (231)
Q Consensus 143 ~~~~~~~l~~~~~~~~s~~~~~~P~~a 169 (231)
.++-.|+.-+-.|-.+++++.+...++
T Consensus 7 nsLaaya~I~~~PE~~aLYFv~gVC~G 33 (153)
T PF14851_consen 7 NSLAAYAHIRDNPERFALYFVSGVCAG 33 (153)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 333444444444555554444433333
No 156
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=32.58 E-value=1.9e+02 Score=21.31 Aligned_cols=24 Identities=8% Similarity=0.267 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 026867 63 GGFLLIAQCLLNSIWYILQAHIIK 86 (231)
Q Consensus 63 G~l~~l~aa~~~a~~~v~~~~~~~ 86 (231)
|.+..+++...+|..+..-++..+
T Consensus 49 G~l~i~iGl~iLatEf~WA~r~L~ 72 (121)
T TIGR02611 49 GWLTIFIGLAILSLEFVWAQRLLR 72 (121)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHH
Confidence 667777788888887777766653
No 157
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=32.21 E-value=4.1e+02 Score=24.58 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=35.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChh--HHHHHHHHHHHHHHHHHHHHh
Q 026867 57 LSNWVTGGFLLIAQCLLNSIWYILQAHIIKIYPAE--LVVVSLYLLCASIISVPACLM 112 (231)
Q Consensus 57 ~~~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 112 (231)
..+.++|.+.+..+.+.-.+..++.++..+..++. .......+..++...+++...
T Consensus 283 ~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~ 340 (493)
T KOG1330|consen 283 NATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL 340 (493)
T ss_pred ccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH
Confidence 34567788888888888888889998877766532 333333344455555444444
No 158
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=32.08 E-value=3.8e+02 Score=24.07 Aligned_cols=79 Identities=19% Similarity=0.103 Sum_probs=41.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCC--ce-----eeeehhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheec
Q 026867 130 SVVLSGFFGSSFSTLVHTWGLHLKG--PV-----YIAIFKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 130 ~l~~lgv~~~~i~~~~~~~~l~~~~--~~-----~~s~~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
.++..|.......+....+..+..+ +. ..+.++.=.-.=+.+-|.++-+-......+.|+++.+.++.+....
T Consensus 306 ~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 306 LLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555555221 11 2222333333333444444444455567799999999988887665
Q ss_pred CccccC
Q 026867 203 KANEEG 208 (231)
Q Consensus 203 ~~~~~~ 208 (231)
++++++
T Consensus 386 ~~~~~~ 391 (394)
T COG2814 386 ARKDRR 391 (394)
T ss_pred Hhcccc
Confidence 554443
No 159
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=31.83 E-value=1.8e+02 Score=24.42 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=31.1
Q ss_pred eeeehhchHHHHHHHHHHHHhCC-----CchhhhHHHHHHHHHHhhhheec
Q 026867 157 YIAIFKPLSIAIAAIMGVVFLGD-----TLHLGSVIGAIIICIGFYAVLWG 202 (231)
Q Consensus 157 ~~s~~~~~~P~~a~i~~~~~~gE-----~~~~~~ilG~~lii~Gv~l~~~~ 202 (231)
..+.+.....+.-.++.++=-++ .+|..|+++..+++.|+++..+.
T Consensus 206 ~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~ 256 (269)
T PRK12437 206 VFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYR 256 (269)
T ss_pred hHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666676542111 36789999999999998776433
No 160
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=30.55 E-value=33 Score=23.59 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=19.2
Q ss_pred CchhhhHHHHHHHHHHhhhheecCc
Q 026867 180 TLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 180 ~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
..++..++|..+++.|+.+...+..
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~ 28 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFF 28 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999988777654433
No 161
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=30.36 E-value=2.9e+02 Score=22.19 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCC--ceeeeehhchH
Q 026867 128 LVSVVLSGFFGSSFSTLVHTWGLHLKG--PVYIAIFKPLS 165 (231)
Q Consensus 128 ~~~l~~lgv~~~~i~~~~~~~~l~~~~--~~~~s~~~~~~ 165 (231)
.+.++..|++++...|.+|.+..++.+ ..+.+..-++.
T Consensus 127 lItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~l 166 (226)
T COG4858 127 LITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLL 166 (226)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHH
Confidence 444455555555555555555555554 44444444433
No 162
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=30.30 E-value=1.4e+02 Score=25.21 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=29.5
Q ss_pred eeehhchHHHHHHHHHHHHhCC---------CchhhhHHHHHHHHHHhhhhee
Q 026867 158 IAIFKPLSIAIAAIMGVVFLGD---------TLHLGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 158 ~s~~~~~~P~~a~i~~~~~~gE---------~~~~~~ilG~~lii~Gv~l~~~ 201 (231)
...+.....+.-.++..+=-++ .++..|++...+++.|+++..+
T Consensus 214 ~~~yli~Y~~~Rf~iEf~R~~~~~~~~~~~~~lt~~Q~~sl~~i~~g~~~~~~ 266 (278)
T TIGR00544 214 FGVYLIGYGIFRFIIEGLREPDLMLTEFSFLNISMGQILSLLMIAGILIIMLL 266 (278)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhccccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666542222 2688999999999999887654
No 163
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=29.74 E-value=4.7e+02 Score=24.47 Aligned_cols=29 Identities=14% Similarity=0.065 Sum_probs=23.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCcee
Q 026867 129 VSVVLSGFFGSSFSTLVHTWGLHLKGPVY 157 (231)
Q Consensus 129 ~~l~~lgv~~~~i~~~~~~~~l~~~~~~~ 157 (231)
.+++.+|++-.++-|+.+.+.+++.+..+
T Consensus 385 ~~~i~iGi~~~~iYy~vF~f~I~kfnlkT 413 (524)
T TIGR02005 385 VTQIIIGLCFTAIYFLVFRFLILKFNIPT 413 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34478899888999999999999987644
No 164
>PF12832 MFS_1_like: MFS_1 like family
Probab=29.07 E-value=1e+02 Score=20.42 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHH
Q 026867 127 ALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGV 174 (231)
Q Consensus 127 ~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~ 174 (231)
.+.+.++.+..+....|.-.+.-..-.++..++.+..+.|....+..-
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~p 53 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPP 53 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666777777777777776665544
No 165
>PRK15049 L-asparagine permease; Provisional
Probab=28.94 E-value=4.6e+02 Score=24.04 Aligned_cols=9 Identities=11% Similarity=0.397 Sum_probs=3.7
Q ss_pred chHHHHHHH
Q 026867 163 PLSIAIAAI 171 (231)
Q Consensus 163 ~~~P~~a~i 171 (231)
...+.++++
T Consensus 423 p~~~~~~l~ 431 (499)
T PRK15049 423 PFTSWLTLL 431 (499)
T ss_pred cHHHHHHHH
Confidence 444444443
No 166
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=27.99 E-value=4.3e+02 Score=23.42 Aligned_cols=17 Identities=0% Similarity=-0.005 Sum_probs=7.7
Q ss_pred cchhhhHHHHHHHHHHH
Q 026867 11 TQAKIIGAIVSISGALL 27 (231)
Q Consensus 11 ~~~~~~g~~i~~~G~~l 27 (231)
...++.-+.+.+++..+
T Consensus 14 ~~~r~~i~~~~~~~~~~ 30 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVI 30 (465)
T ss_pred cCcHHHHHHHHHHHHHH
Confidence 33444444444555443
No 167
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=27.86 E-value=4.4e+02 Score=23.52 Aligned_cols=47 Identities=11% Similarity=-0.196 Sum_probs=22.5
Q ss_pred HHHHHhHHHHHHHHHHHHHh---hcCCceeeeehhchHHHHHHHHHHHHh
Q 026867 131 VVLSGFFGSSFSTLVHTWGL---HLKGPVYIAIFKPLSIAIAAIMGVVFL 177 (231)
Q Consensus 131 l~~lgv~~~~i~~~~~~~~l---~~~~~~~~s~~~~~~P~~a~i~~~~~~ 177 (231)
+.-++.+...+.|.+-..+. ++-++..-.......|+.+++...++.
T Consensus 353 l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~ 402 (445)
T PRK10644 353 VSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTLIAFVYCIWAV 402 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccchhHHHHHHHHHHHHHH
Confidence 33444444445555444332 222232222344567777777765553
No 168
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=27.26 E-value=40 Score=20.26 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=8.6
Q ss_pred HHHHHHHhhhheecCcc
Q 026867 189 AIIICIGFYAVLWGKAN 205 (231)
Q Consensus 189 ~~lii~Gv~l~~~~~~~ 205 (231)
..++++|+++-.+.+++
T Consensus 18 ~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHcccc
Confidence 33445566665554443
No 169
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.18 E-value=2.2e+02 Score=20.68 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=19.9
Q ss_pred cccccchhhhHHHHHHHHHHHHH
Q 026867 7 RSRITQAKIIGAIVSISGALLVV 29 (231)
Q Consensus 7 kek~~~~~~~g~~i~~~G~~li~ 29 (231)
+.|++..+-.++.+.++|.+++.
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy 27 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMY 27 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 56888899999999999988874
No 170
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.10 E-value=1.1e+02 Score=22.17 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhC-CCchhhhHHHHHHH-H-HHhhhhe
Q 026867 165 SIAIAAIMGVVFLG-DTLHLGSVIGAIII-C-IGFYAVL 200 (231)
Q Consensus 165 ~P~~a~i~~~~~~g-E~~~~~~ilG~~li-i-~Gv~l~~ 200 (231)
..++++.+||++=+ -.-+|+.++...++ + +|+..+.
T Consensus 55 GilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 55 GILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34567777776522 12334444444444 3 4555444
No 171
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=27.10 E-value=3.6e+02 Score=25.25 Aligned_cols=34 Identities=3% Similarity=-0.148 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeee
Q 026867 126 VALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIA 159 (231)
Q Consensus 126 ~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s 159 (231)
..|++++.+|++-.++-|..+.+.+++.+..+-+
T Consensus 395 ~~~~~~~~~g~~~~~iyy~vF~f~I~kfnlkTpG 428 (530)
T PRK10110 395 TKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPG 428 (530)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3588888999988888888899999998755533
No 172
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=26.93 E-value=41 Score=22.33 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=15.1
Q ss_pred HHHHhCCCchhhhH-HHHHHHHHHhhhhe
Q 026867 173 GVVFLGDTLHLGSV-IGAIIICIGFYAVL 200 (231)
Q Consensus 173 ~~~~~gE~~~~~~i-lG~~lii~Gv~l~~ 200 (231)
.|-++|.++...++ +|.+-.++|+....
T Consensus 4 ~Y~I~Gr~V~~H~LAi~tLg~~~~~~~~~ 32 (71)
T PF11022_consen 4 AYTIFGRQVQSHYLAIATLGTVFGGVYLA 32 (71)
T ss_pred eeeecccccccchhHHHHHHHHHHHheec
Confidence 35577877766553 35554554444433
No 173
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=25.96 E-value=18 Score=26.71 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=9.9
Q ss_pred HHHHHHhHHHHHHHHH
Q 026867 130 SVVLSGFFGSSFSTLV 145 (231)
Q Consensus 130 ~l~~lgv~~~~i~~~~ 145 (231)
.++..|+..|+++|.+
T Consensus 58 vili~GvvvT~vays~ 73 (129)
T PF15099_consen 58 VILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHhhHhheeeEee
Confidence 3455667677776655
No 174
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=25.39 E-value=5.3e+02 Score=23.67 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHH
Q 026867 91 ELVVVSLYLLCASI 104 (231)
Q Consensus 91 ~~~~~~~~~~~~~i 104 (231)
|......+..+..+
T Consensus 331 P~~a~~~~~~i~~l 344 (507)
T TIGR00910 331 PVPLVIIQGIITSI 344 (507)
T ss_pred cHHHHHHHHHHHHH
Confidence 55555555555444
No 175
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=25.29 E-value=4.3e+02 Score=22.58 Aligned_cols=19 Identities=5% Similarity=-0.059 Sum_probs=9.9
Q ss_pred chhhhHHHHHHHHHHhhhh
Q 026867 181 LHLGSVIGAIIICIGFYAV 199 (231)
Q Consensus 181 ~~~~~ilG~~lii~Gv~l~ 199 (231)
.....++.+++.+.+..+.
T Consensus 376 ~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 376 FRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443
No 176
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=24.24 E-value=5.3e+02 Score=23.20 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhhhe
Q 026867 186 VIGAIIICIGFYAVL 200 (231)
Q Consensus 186 ilG~~lii~Gv~l~~ 200 (231)
+.|++.++.++....
T Consensus 417 ~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 417 LMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555544433
No 177
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=24.18 E-value=1.5e+02 Score=16.85 Aligned_cols=23 Identities=4% Similarity=-0.179 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 026867 61 VTGGFLLIAQCLLNSIWYILQAH 83 (231)
Q Consensus 61 ~~G~l~~l~aa~~~a~~~v~~~~ 83 (231)
.+=+++-++.+.+||.|++...-
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~~A 27 (36)
T CHL00196 5 LLVIAAPVLAAASWALFNIGRLA 27 (36)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 34567778899999999987543
No 178
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=23.28 E-value=5e+02 Score=22.61 Aligned_cols=122 Identities=8% Similarity=-0.041 Sum_probs=53.5
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHH
Q 026867 55 ISLSNWVTGGFLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLS 134 (231)
Q Consensus 55 ~~~~~~~~G~l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 134 (231)
+..++...|.++.-.-..+.-...+..|...++.+....++.+.+.+....+..........+.+- . +..........
T Consensus 277 pn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~ke-s-~~~s~i~F~~~ 354 (454)
T KOG4332|consen 277 PNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKE-S-PSESLIGFCLF 354 (454)
T ss_pred CCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcC-C-chHHHHHHHHH
Confidence 333444567665443333333334444554444443445555555444443333333222222221 1 11222222222
Q ss_pred HhHHHHHHHHHHHHHhhcC-CceeeeehhchHHHHHHHHHHHHhC
Q 026867 135 GFFGSSFSTLVHTWGLHLK-GPVYIAIFKPLSIAIAAIMGVVFLG 178 (231)
Q Consensus 135 gv~~~~i~~~~~~~~l~~~-~~~~~s~~~~~~P~~a~i~~~~~~g 178 (231)
-..++..--.+...=-|++ .-.+.++++....+.-++.-..+++
T Consensus 355 E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLyn 399 (454)
T KOG4332|consen 355 EACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN 399 (454)
T ss_pred HHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee
Confidence 2212222222222223334 3567788888877777777666666
No 179
>PF09534 Trp_oprn_chp: Tryptophan-associated transmembrane protein (Trp_oprn_chp); InterPro: IPR019051 Members of this family are predicted transmembrane proteins with four membrane-spanning helices. Members are found in the Actinobacteria (Mycobacterium, Corynebacterium, Streptomyces), always associated with genes for tryptophan biosynthesis.
Probab=23.03 E-value=1.2e+02 Score=24.28 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHH
Q 026867 16 IGAIVSISGALLVV 29 (231)
Q Consensus 16 ~g~~i~~~G~~li~ 29 (231)
+++++..+|..++.
T Consensus 2 ~A~ll~~lgA~~~~ 15 (189)
T PF09534_consen 2 LAVLLLALGAALLW 15 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666777776664
No 180
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=22.86 E-value=5e+02 Score=23.92 Aligned_cols=31 Identities=6% Similarity=0.052 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Q 026867 126 VALVSVVLSGFFGSSFSTLVHTWGLHLKGPV 156 (231)
Q Consensus 126 ~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~ 156 (231)
..|++++.+|+.-.++-|..+.+.+++.+..
T Consensus 348 ~~~~~~~~iG~~~~~iyy~~F~~~I~k~~l~ 378 (476)
T TIGR01998 348 NQPLMLLVQGLVFFALYYVVFRFAIRRFNLK 378 (476)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4688889999988999999999999998753
No 181
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=22.69 E-value=51 Score=26.88 Aligned_cols=27 Identities=4% Similarity=-0.109 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHhhhheecCccccCc
Q 026867 183 LGSVIGAIIICIGFYAVLWGKANEEGT 209 (231)
Q Consensus 183 ~~~ilG~~lii~Gv~l~~~~~~~~~~~ 209 (231)
..+-+|+...-++|+.-+++.+.++++
T Consensus 200 lA~~lgmteSqvkVWFQNRRTKWRKkh 226 (288)
T KOG0847|consen 200 LAQELNMTESQVKVWFQNRRTKWRKKH 226 (288)
T ss_pred hhccccccHHHHHHHHhcchhhhhhhh
Confidence 445568888889999988776655544
No 182
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=21.79 E-value=1.1e+02 Score=28.25 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhcCCceeeeehhchHHHHHHHHHHHHh------------CCCchhhhHHHHHHHHHHhhhheecCcc
Q 026867 140 SFSTLVHTWGLHLKGPVYIAIFKPLSIAIAAIMGVVFL------------GDTLHLGSVIGAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 140 ~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~i~~~~~~------------gE~~~~~~ilG~~lii~Gv~l~~~~~~~ 205 (231)
++=+.+|-+-.++.++...+......-+.-++.+-.++ +-+++..+.+|+.+=+.+.++++.-.+.
T Consensus 433 vivlglfWKr~n~~GAi~G~~~GL~~tlv~i~l~~~i~~~~~~~~~~~~~~~~~~~~g~~sipv~F~~~~ivSllt~~ 510 (529)
T COG4147 433 VIVLGLFWKRLNTAGAIAGMLLGLIVTLVLIILSPTIWVVILGHPGFGWAGFPYEGPGLFSIPVGFLGAWIVSLLTKP 510 (529)
T ss_pred hhhHHHHHhhccHHhHHHHHHHHHHHHHHHHHhCccccccccCccccccccCCCCCcchhhhhHHHHHhHheeccCCC
Confidence 34456666666666666666666666666666555444 2344556778888888888887665443
No 183
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=21.68 E-value=1.7e+02 Score=16.62 Aligned_cols=23 Identities=17% Similarity=-0.010 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 026867 61 VTGGFLLIAQCLLNSIWYILQAH 83 (231)
Q Consensus 61 ~~G~l~~l~aa~~~a~~~v~~~~ 83 (231)
.+-++.-++.+.+|+.|++...-
T Consensus 5 ~liVl~Pil~A~gWa~fNIg~~A 27 (36)
T PF06298_consen 5 LLIVLLPILPAAGWALFNIGRAA 27 (36)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHH
Confidence 34567778889999999988654
No 184
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=21.52 E-value=79 Score=23.37 Aligned_cols=12 Identities=17% Similarity=0.672 Sum_probs=5.4
Q ss_pred HHHHHHHHhhhh
Q 026867 188 GAIIICIGFYAV 199 (231)
Q Consensus 188 G~~lii~Gv~l~ 199 (231)
.++++++|+++.
T Consensus 43 s~vvlvi~~~LL 54 (125)
T PF15048_consen 43 SFVVLVISFFLL 54 (125)
T ss_pred HHHHHHHHHHHH
Confidence 334444555543
No 185
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=21.40 E-value=4.8e+02 Score=24.31 Aligned_cols=35 Identities=6% Similarity=-0.218 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeee
Q 026867 126 VALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAI 160 (231)
Q Consensus 126 ~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~ 160 (231)
..|++++.+|++..++-|+.+.+.+++.+..+-+-
T Consensus 386 ~~~~~~~~vGi~~~~iyy~vF~~~I~kfnlkTpGR 420 (517)
T TIGR02004 386 TKWYLVPIVAAIWFVVYYFVFKTAITTFDLKTPGR 420 (517)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 45888899999888899999999999987555433
No 186
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=21.32 E-value=6.9e+02 Score=23.50 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHHHhhcCC-----ceeeeehhchHHHHHHHHHHHH-hC
Q 026867 135 GFFGSSFSTLVHTWGLHLKG-----PVYIAIFKPLSIAIAAIMGVVF-LG 178 (231)
Q Consensus 135 gv~~~~i~~~~~~~~l~~~~-----~~~~s~~~~~~P~~a~i~~~~~-~g 178 (231)
..++.+++|+-+-+++++-+ --.-+.+....|.+++++-.++ ++
T Consensus 414 ~W~~I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~ 463 (541)
T COG0833 414 AWGSICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIG 463 (541)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHH
Confidence 33445677788878877665 3456777788888887765544 44
No 187
>PHA03049 IMV membrane protein; Provisional
Probab=21.15 E-value=1.2e+02 Score=19.73 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhhhheecCccc
Q 026867 185 SVIGAIIICIGFYAVLWGKANE 206 (231)
Q Consensus 185 ~ilG~~lii~Gv~l~~~~~~~~ 206 (231)
..+++++.+.|+++.-..+|++
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3556666677777765444443
No 188
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=21.08 E-value=6.4e+02 Score=22.98 Aligned_cols=33 Identities=12% Similarity=-0.114 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHHHHHhhcCCceeeeehhchH
Q 026867 133 LSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLS 165 (231)
Q Consensus 133 ~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~ 165 (231)
..++....+.-..+.+..++.++...+.++-..
T Consensus 391 l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~ 423 (500)
T PRK09584 391 LQSIGELMISGLGLAMVAQLVPQRLMGFIMGSW 423 (500)
T ss_pred HHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 344444444445556677778877777666544
No 189
>PF15471 TMEM171: Transmembrane protein family 171
Probab=20.79 E-value=1.1e+02 Score=25.81 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHhhhhee
Q 026867 183 LGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 183 ~~~ilG~~lii~Gv~l~~~ 201 (231)
..|++|-++++.|+-....
T Consensus 161 slQImGPlIVl~GLCFFVV 179 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVV 179 (319)
T ss_pred ehhhhhhHHHHHhhhhhhe
Confidence 3688899999988654433
No 190
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=20.71 E-value=91 Score=19.02 Aligned_cols=19 Identities=21% Similarity=0.045 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHhhhhee
Q 026867 183 LGSVIGAIIICIGFYAVLW 201 (231)
Q Consensus 183 ~~~ilG~~lii~Gv~l~~~ 201 (231)
+...+|..+++.|.+.-.+
T Consensus 27 P~~~~Gi~Lii~g~v~r~~ 45 (49)
T PF11384_consen 27 PAILIGIGLIISGGVGRRR 45 (49)
T ss_pred HHHHHhHHHHhhhhhhhhh
Confidence 4456788888877665443
No 191
>PRK11246 hypothetical protein; Provisional
Probab=20.69 E-value=1.6e+02 Score=24.08 Aligned_cols=20 Identities=0% Similarity=0.081 Sum_probs=10.0
Q ss_pred cccchhhhHHHHHHHHHHHH
Q 026867 9 RITQAKIIGAIVSISGALLV 28 (231)
Q Consensus 9 k~~~~~~~g~~i~~~G~~li 28 (231)
|++..+..=+++|++-++++
T Consensus 7 ~fRl~r~~iiliclallv~l 26 (218)
T PRK11246 7 KFRLHRTAIVLICLALLVAL 26 (218)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 44444555555555554444
No 192
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.44 E-value=2.1e+02 Score=22.30 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHH
Q 026867 15 IIGAIVSISGALLVV 29 (231)
Q Consensus 15 ~~g~~i~~~G~~li~ 29 (231)
++|+++...|++.++
T Consensus 13 ilgilli~~gI~~Lv 27 (191)
T PF04156_consen 13 ILGILLIASGIAALV 27 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555554
No 193
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=20.09 E-value=2.9e+02 Score=23.02 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026867 64 GFLLIAQCLLNSIWYIL 80 (231)
Q Consensus 64 ~l~~l~aa~~~a~~~v~ 80 (231)
.+..++++.+|--|...
T Consensus 45 fl~~ll~~~lWl~YG~~ 61 (243)
T KOG1623|consen 45 FLMGLLSCSLWLYYGLL 61 (243)
T ss_pred cHHHHHHHHHHHHhhhh
Confidence 46666666666655544
No 194
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=20.01 E-value=5.2e+02 Score=21.55 Aligned_cols=107 Identities=15% Similarity=0.234 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeeehhchHHHHHH
Q 026867 91 ELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTLVHTWGLHLKGPVYIAIFKPLSIAIAA 170 (231)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~s~~~~~~P~~a~ 170 (231)
.+...+.+.+.+.+.+.++-.... ..++......|...-++-+ +-.+.--+++++.+...-+++-.+..+.-.
T Consensus 37 nflll~vQSlvcvv~l~iLk~l~~---~~fR~t~aK~WfpiSfLLv----~MIyt~SKsLqyL~vpiYTiFKNltII~iA 109 (309)
T COG5070 37 NFLLLAVQSLVCVVGLLILKFLRL---VEFRLTKAKKWFPISFLLV----VMIYTSSKSLQYLAVPIYTIFKNLTIILIA 109 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhH---hheehhhhhhhcCHHHHHH----HHHHhcccceeeeeeeHHHHhccceeehhH
Confidence 455566666555555444433311 1222222233443322211 112334577888888888888888888888
Q ss_pred HHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 171 IMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 171 i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
.....+||.+++-.......+++..-+...+...
T Consensus 110 ygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~ 143 (309)
T COG5070 110 YGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ 143 (309)
T ss_pred hhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence 8999999999999999999999887777666544
Done!