Query 026867
Match_columns 231
No_of_seqs 119 out of 1540
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 00:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.3 2.7E-12 9.2E-17 96.0 5.3 72 133-204 34-106 (137)
2 3b5d_A Multidrug transporter E 98.9 3.2E-09 1.1E-13 76.4 7.8 71 133-203 34-105 (110)
3 3b5d_A Multidrug transporter E 92.5 0.039 1.3E-06 38.9 1.3 28 2-29 75-102 (110)
4 2i68_A Protein EMRE; transmemb 90.3 0.067 2.3E-06 39.3 0.6 28 2-29 75-102 (137)
5 2l2t_A Receptor tyrosine-prote 55.4 8.7 0.0003 22.1 2.3 16 193-208 27-42 (44)
6 3l1l_A Arginine/agmatine antip 50.5 72 0.0025 26.9 8.6 45 161-205 386-430 (445)
7 4aps_A DI-OR tripeptide H+ sym 49.9 85 0.0029 26.5 9.0 13 144-156 406-418 (491)
8 1pw4_A Glycerol-3-phosphate tr 49.7 1.1E+02 0.0037 25.3 11.1 25 132-156 354-378 (451)
9 3rko_J NADH-quinone oxidoreduc 47.9 89 0.003 23.7 14.8 33 170-202 127-161 (184)
10 2ks1_B Epidermal growth factor 44.8 15 0.00051 21.1 2.2 10 195-204 30-39 (44)
11 4aps_A DI-OR tripeptide H+ sym 36.6 1.9E+02 0.0065 24.2 13.2 20 70-89 63-83 (491)
12 2zxe_G FXYD10, phospholemman-l 22.1 47 0.0016 21.2 1.8 18 186-203 25-42 (74)
13 3o7q_A L-fucose-proton symport 20.2 3.5E+02 0.012 21.9 12.5 133 65-208 299-438 (438)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.29 E-value=2.7e-12 Score=96.05 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=54.9
Q ss_pred HHHhHHHHHHHHHHHHHhhcCCceeeeeh-hchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCc
Q 026867 133 LSGFFGSSFSTLVHTWGLHLKGPVYIAIF-KPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKA 204 (231)
Q Consensus 133 ~lgv~~~~i~~~~~~~~l~~~~~~~~s~~-~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~ 204 (231)
.+++++++++|++|++++++.+++++..+ ..+.|+++.++|++++||++++.+++|+++|++|++++...++
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 36777899999999999999999999999 8999999999999999999999999999999999999876543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.92 E-value=3.2e-09 Score=76.43 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=65.2
Q ss_pred HHHhHHHHHHHHHHHHHhhcCCceeeeeh-hchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecC
Q 026867 133 LSGFFGSSFSTLVHTWGLHLKGPVYIAIF-KPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGK 203 (231)
Q Consensus 133 ~lgv~~~~i~~~~~~~~l~~~~~~~~s~~-~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~ 203 (231)
.+++++..++|+++.+++|+.+.+.+..+ ..+.|+.+.+++++++||++++.+++|..+|+.|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35666788999999999999999999888 799999999999999999999999999999999999987544
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=92.54 E-value=0.039 Score=38.94 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=25.6
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVV 29 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~ 29 (231)
+.++||||++..|++|+.+.++|++++.
T Consensus 75 ~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 75 SWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999998885
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=90.28 E-value=0.067 Score=39.35 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=19.7
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHH
Q 026867 2 EKLTLRSRITQAKIIGAIVSISGALLVV 29 (231)
Q Consensus 2 ~~~~lkek~~~~~~~g~~i~~~G~~li~ 29 (231)
+.++|+|+++..|++|+.+.++|++++.
T Consensus 75 g~l~lgE~ls~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 75 SWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999886
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=55.42 E-value=8.7 Score=22.10 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=6.5
Q ss_pred HHHhhhheecCccccC
Q 026867 193 CIGFYAVLWGKANEEG 208 (231)
Q Consensus 193 i~Gv~l~~~~~~~~~~ 208 (231)
..+.++..++++++++
T Consensus 27 ~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 27 GLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHTTCSSCC
T ss_pred HHHHHHHhhhhhhhhc
Confidence 3334444444443433
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=50.51 E-value=72 Score=26.85 Aligned_cols=45 Identities=4% Similarity=-0.174 Sum_probs=23.2
Q ss_pred hhchHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhhhheecCcc
Q 026867 161 FKPLSIAIAAIMGVVFLGDTLHLGSVIGAIIICIGFYAVLWGKAN 205 (231)
Q Consensus 161 ~~~~~P~~a~i~~~~~~gE~~~~~~ilG~~lii~Gv~l~~~~~~~ 205 (231)
.....++.+.+...+..-..-....+.|..+++.|+.+....+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555554444422222234455777777787666544433
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=49.88 E-value=85 Score=26.49 Aligned_cols=13 Identities=8% Similarity=-0.120 Sum_probs=6.6
Q ss_pred HHHHHHhhcCCce
Q 026867 144 LVHTWGLHLKGPV 156 (231)
Q Consensus 144 ~~~~~~l~~~~~~ 156 (231)
..+.+..+..++.
T Consensus 406 ~~~~~~~~~~p~~ 418 (491)
T 4aps_A 406 VGLSVTTKLAPKA 418 (491)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCHH
Confidence 3455555555544
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=49.71 E-value=1.1e+02 Score=25.25 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=11.9
Q ss_pred HHHHhHHHHHHHHHHHHHhhcCCce
Q 026867 132 VLSGFFGSSFSTLVHTWGLHLKGPV 156 (231)
Q Consensus 132 ~~lgv~~~~i~~~~~~~~l~~~~~~ 156 (231)
+..|.......-..+.+..+..++.
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (451)
T 1pw4_A 354 IVIGFLIYGPVMLIGLHALELAPKK 378 (451)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHhchHHHHHHHHHHHhchh
Confidence 3344333333333445666666654
No 9
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=47.86 E-value=89 Score=23.70 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCchhhhHHHHHHHH--HHhhhheec
Q 026867 170 AIMGVVFLGDTLHLGSVIGAIIIC--IGFYAVLWG 202 (231)
Q Consensus 170 ~i~~~~~~gE~~~~~~ilG~~lii--~Gv~l~~~~ 202 (231)
--+|..++++-+=+....+..+.+ .|.+...++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357888999999999999988875 455544433
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=44.80 E-value=15 Score=21.09 Aligned_cols=10 Identities=10% Similarity=0.156 Sum_probs=3.9
Q ss_pred HhhhheecCc
Q 026867 195 GFYAVLWGKA 204 (231)
Q Consensus 195 Gv~l~~~~~~ 204 (231)
++++..++++
T Consensus 30 ~~~~~~RRr~ 39 (44)
T 2ks1_B 30 GIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHhhhhH
Confidence 3334433333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=36.58 E-value=1.9e+02 Score=24.24 Aligned_cols=20 Identities=0% Similarity=-0.154 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhh-cC
Q 026867 70 QCLLNSIWYILQAHIIKI-YP 89 (231)
Q Consensus 70 aa~~~a~~~v~~~~~~~~-~~ 89 (231)
..++.++..+...++.++ ..
T Consensus 63 ~~~~~~~~~~~~g~l~dr~~g 83 (491)
T 4aps_A 63 YASMVYLSGTIGGFVADRIIG 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 344455555666666666 45
No 12
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=22.06 E-value=47 Score=21.18 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhheecC
Q 026867 186 VIGAIIICIGFYAVLWGK 203 (231)
Q Consensus 186 ilG~~lii~Gv~l~~~~~ 203 (231)
++++++.+.|++++..+|
T Consensus 25 ifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 456666677877776554
No 13
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=20.20 E-value=3.5e+02 Score=21.92 Aligned_cols=133 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhHHHHHHHH
Q 026867 65 FLLIAQCLLNSIWYILQAHIIKIYPAELVVVSLYLLCASIISVPACLMAEQDLSAWRLKTDVALVSVVLSGFFGSSFSTL 144 (231)
Q Consensus 65 l~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~i~~~ 144 (231)
.+.....++..+..+...+..++.. ...........+++.+......... .....++..|.......-.
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~~~ 367 (438)
T 3o7q_A 299 NYLTGTMVCFFIGRFTGTWLISRFA-PHKVLAAYALIAMALCLISAFAGGH----------VGLIALTLCSAFMSIQYPT 367 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhcCCce------eeeehhchHHHHHHHHHHHHhCCC-chhhhHHHHHHHHHHhhhheecCccccC
Q 026867 145 VHTWGLHLKGPV------YIAIFKPLSIAIAAIMGVVFLGDT-LHLGSVIGAIIICIGFYAVLWGKANEEG 208 (231)
Q Consensus 145 ~~~~~l~~~~~~------~~s~~~~~~P~~a~i~~~~~~gE~-~~~~~ilG~~lii~Gv~l~~~~~~~~~~ 208 (231)
.+.+..+..++. .......-..+...+.+++.-.-. .....++.+++.+..+++..+.++++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T 3o7q_A 368 IFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFRSQTATN 438 (438)
T ss_dssp HHHHHHSSCGGGHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTCCCC---
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhccCC
Done!