Query 026867
Match_columns 231
No_of_seqs 119 out of 1540
Neff 8.7
Searched_HMMs 13730
Date Tue Mar 26 00:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026867.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026867hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 75.9 15 0.0011 28.4 12.1 31 128-158 347-377 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 70.2 21 0.0015 27.5 15.1 19 71-89 69-87 (447)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 28.8 27 0.002 16.0 2.8 17 62-78 3-19 (27)
4 d1iwga8 f.35.1.1 (A:513-566,A: 16.2 1.7E+02 0.013 20.5 9.4 27 167-193 95-121 (222)
5 d1pv7a_ f.38.1.2 (A:) Lactose 8.1 3.4E+02 0.025 19.1 12.1 28 129-156 317-344 (417)
6 d2axte1 f.23.38.1 (E:3-84) Cyt 6.3 1.5E+02 0.011 17.4 2.2 44 180-223 24-67 (82)
7 d1v54m_ f.23.7.1 (M:) Mitochon 5.5 2.3E+02 0.017 14.6 2.5 20 7-26 7-27 (43)
8 d1rh5c_ f.23.29.1 (C:) Sec-bet 4.4 2.2E+02 0.016 13.0 1.9 24 5-28 3-26 (32)
9 d1q90a3 f.23.23.1 (A:248-292) 3.6 3.4E+02 0.025 13.9 3.8 29 59-87 3-31 (45)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 3.6 1.8E+02 0.013 17.2 1.2 11 193-203 32-42 (91)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=75.88 E-value=15 Score=28.38 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCceee
Q 026867 128 LVSVVLSGFFGSSFSTLVHTWGLHLKGPVYI 158 (231)
Q Consensus 128 ~~~l~~lgv~~~~i~~~~~~~~l~~~~~~~~ 158 (231)
+..++..|..........+.+..+..+....
T Consensus 347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~ 377 (447)
T d1pw4a_ 347 MICMIVIGFLIYGPVMLIGLHALELAPKKAA 377 (447)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3334444444444445556666666665543
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=70.20 E-value=21 Score=27.49 Aligned_cols=19 Identities=0% Similarity=-0.068 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 026867 71 CLLNSIWYILQAHIIKIYP 89 (231)
Q Consensus 71 a~~~a~~~v~~~~~~~~~~ 89 (231)
.+.+++......++.++..
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3444555566666666665
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.83 E-value=27 Score=15.98 Aligned_cols=17 Identities=12% Similarity=0.086 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 026867 62 TGGFLLIAQCLLNSIWY 78 (231)
Q Consensus 62 ~G~l~~l~aa~~~a~~~ 78 (231)
+|.++.-++.++||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57788888888888664
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=16.24 E-value=1.7e+02 Score=20.46 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCchhhhHHHHHHHH
Q 026867 167 AIAAIMGVVFLGDTLHLGSVIGAIIIC 193 (231)
Q Consensus 167 ~~a~i~~~~~~gE~~~~~~ilG~~lii 193 (231)
+.+.+++..+.+.+++....+|.++.+
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchh
Confidence 345556777889999998888877654
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=8.12 E-value=3.4e+02 Score=19.07 Aligned_cols=28 Identities=7% Similarity=-0.222 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCce
Q 026867 129 VSVVLSGFFGSSFSTLVHTWGLHLKGPV 156 (231)
Q Consensus 129 ~~l~~lgv~~~~i~~~~~~~~l~~~~~~ 156 (231)
...+..|+......-..+.+..+..++.
T Consensus 317 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 344 (417)
T d1pv7a_ 317 ILKTLHMFEVPFLLVGCFKYITSQFEVR 344 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHh
Confidence 3334444443444444455555555553
No 6
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.33 E-value=1.5e+02 Score=17.43 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=26.0
Q ss_pred CchhhhHHHHHHHHHHhhhheecCccccCccCCCCCCCcccccc
Q 026867 180 TLHLGSVIGAIIICIGFYAVLWGKANEEGTTYSSDSKTPLLQSL 223 (231)
Q Consensus 180 ~~~~~~ilG~~lii~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (231)
++....+.|.+++-.|+..-..+.++..+--.++.++.|+..+.
T Consensus 24 TIPslFiaGwlFVstGLAYdvFGtPrPneYft~~rq~~pli~~R 67 (82)
T d2axte1 24 TIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDR 67 (82)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTCCCTTCSSCSSCCSCCCCCCS
T ss_pred cccHHHHhhhhheecccchhhcCCCCcccccccccccCcccccc
Confidence 45556677888888888776666654433323444555555443
No 7
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.51 E-value=2.3e+02 Score=14.58 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=12.2
Q ss_pred cccccch-hhhHHHHHHHHHH
Q 026867 7 RSRITQA-KIIGAIVSISGAL 26 (231)
Q Consensus 7 kek~~~~-~~~g~~i~~~G~~ 26 (231)
||+++.. +.+|+.+.|++.+
T Consensus 7 ~~~ls~~E~aigLt~~f~~~L 27 (43)
T d1v54m_ 7 KTPTSPKEQAIGLSVTFLSFL 27 (43)
T ss_dssp SSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 3444444 6777777777653
No 8
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.40 E-value=2.2e+02 Score=13.03 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=17.0
Q ss_pred cccccccchhhhHHHHHHHHHHHH
Q 026867 5 TLRSRITQAKIIGAIVSISGALLV 28 (231)
Q Consensus 5 ~lkek~~~~~~~g~~i~~~G~~li 28 (231)
|-|-|...-..+|+.++|+=+-.+
T Consensus 3 fskirvkpehvigvtvafviieai 26 (32)
T d1rh5c_ 3 FSKIRVKPEHVIGVTVAFVIIEAI 26 (32)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccceeeccceEEEEEEehhhHHHH
Confidence 446677778889998888755444
No 9
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.57 E-value=3.4e+02 Score=13.91 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=19.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026867 59 NWVTGGFLLIAQCLLNSIWYILQAHIIKI 87 (231)
Q Consensus 59 ~~~~G~l~~l~aa~~~a~~~v~~~~~~~~ 87 (231)
....|.++.+.+.+..-+..++-||-..+
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLKKKQfEK 31 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLKKKQFEK 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777665544
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.56 E-value=1.8e+02 Score=17.25 Aligned_cols=11 Identities=18% Similarity=-0.182 Sum_probs=4.5
Q ss_pred HHHhhhheecC
Q 026867 193 CIGFYAVLWGK 203 (231)
Q Consensus 193 i~Gv~l~~~~~ 203 (231)
+.|+++....|
T Consensus 32 V~~~~~~~~~r 42 (91)
T d1fftb2 32 AILMAVGFAWK 42 (91)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHhhhee
Confidence 34444443333
Done!