Query 026868
Match_columns 231
No_of_seqs 170 out of 554
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 13:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02810 carbon-monoxide oxyge 100.0 4.7E-68 1E-72 456.8 23.9 229 1-230 1-231 (231)
2 PLN02680 carbon-monoxide oxyge 100.0 8.3E-65 1.8E-69 438.9 24.1 227 1-228 1-231 (232)
3 PLN02351 cytochromes b561 fami 100.0 1.1E-62 2.3E-67 426.6 23.1 218 5-225 7-228 (242)
4 KOG1619 Cytochrome b [Energy p 100.0 5.9E-60 1.3E-64 406.3 19.1 216 8-225 17-233 (245)
5 cd08764 Cyt_b561_CG1275_like N 100.0 1.4E-59 3E-64 403.5 17.2 200 23-226 2-204 (214)
6 cd08762 Cyt_b561_CYBASC3 Verte 100.0 5E-52 1.1E-56 346.6 18.0 171 13-185 3-176 (179)
7 cd08765 Cyt_b561_CYBRD1 Verteb 100.0 2.9E-47 6.3E-52 311.9 14.9 149 34-184 1-152 (153)
8 cd08766 Cyt_b561_ACYB-1_like P 100.0 3.3E-46 7E-51 303.6 14.3 144 40-183 1-144 (144)
9 cd08763 Cyt_b561_CYB561 Verteb 100.0 1.1E-43 2.3E-48 288.5 14.2 137 45-181 5-142 (143)
10 cd08761 Cyt_b561_CYB561D2_like 100.0 2.3E-32 4.9E-37 230.0 14.8 137 42-178 16-158 (183)
11 cd08554 Cyt_b561 Eukaryotic cy 100.0 3E-32 6.5E-37 217.3 12.7 130 46-175 1-131 (131)
12 PF03188 Cytochrom_B561: Eukar 100.0 3.1E-31 6.7E-36 212.1 13.9 133 49-181 1-136 (137)
13 smart00665 B561 Cytochrome b-5 100.0 5.6E-30 1.2E-34 204.0 12.2 127 49-175 1-129 (129)
14 cd08760 Cyt_b561_FRRS1_like Eu 99.9 4E-23 8.6E-28 174.6 16.8 132 43-178 32-163 (191)
15 PF10348 DUF2427: Domain of un 98.6 3.3E-07 7.1E-12 71.1 9.2 89 42-137 13-101 (105)
16 KOG4293 Predicted membrane pro 97.7 2E-06 4.3E-11 81.0 -4.1 125 49-177 214-341 (403)
17 PF13301 DUF4079: Protein of u 97.5 0.0016 3.4E-08 55.0 11.1 88 80-177 80-171 (175)
18 PF03188 Cytochrom_B561: Eukar 97.1 0.011 2.3E-07 46.8 11.5 125 82-214 1-127 (137)
19 smart00665 B561 Cytochrome b-5 96.9 0.015 3.3E-07 45.9 10.6 125 82-214 1-126 (129)
20 cd08554 Cyt_b561 Eukaryotic cy 96.8 0.035 7.6E-07 43.8 11.7 125 81-214 3-128 (131)
21 cd08760 Cyt_b561_FRRS1_like Eu 96.2 0.14 3.1E-06 43.0 12.6 96 43-138 65-162 (191)
22 cd08761 Cyt_b561_CYB561D2_like 96.0 0.23 5E-06 41.5 12.9 133 79-219 20-157 (183)
23 cd08763 Cyt_b561_CYB561 Verteb 96.0 0.19 4.1E-06 41.0 11.8 128 79-216 6-135 (143)
24 PF00033 Cytochrom_B_N: Cytoch 96.0 0.049 1.1E-06 44.5 8.6 100 78-177 7-127 (188)
25 cd08764 Cyt_b561_CG1275_like N 94.0 0.91 2E-05 39.5 10.9 131 80-219 24-157 (214)
26 PF13706 PepSY_TM_3: PepSY-ass 92.9 0.061 1.3E-06 33.8 1.5 31 112-142 3-33 (37)
27 cd08766 Cyt_b561_ACYB-1_like P 91.5 4.3 9.3E-05 33.1 11.0 93 79-177 7-99 (144)
28 PLN02680 carbon-monoxide oxyge 91.3 7 0.00015 34.5 12.9 129 45-173 78-215 (232)
29 cd08762 Cyt_b561_CYBASC3 Verte 90.9 3.1 6.7E-05 35.3 10.0 115 22-138 47-168 (179)
30 PF08507 COPI_assoc: COPI asso 89.8 8.7 0.00019 30.6 11.5 116 80-229 4-119 (136)
31 PLN02351 cytochromes b561 fami 89.1 16 0.00034 32.5 14.7 128 45-176 82-221 (242)
32 PF13172 PepSY_TM_1: PepSY-ass 88.8 0.55 1.2E-05 28.7 2.9 28 149-176 2-29 (34)
33 PRK11513 cytochrome b561; Prov 87.6 3.3 7.2E-05 34.6 7.9 97 78-177 8-104 (176)
34 PF01292 Ni_hydr_CYTB: Prokary 87.2 8.9 0.00019 31.1 10.1 99 79-178 6-123 (182)
35 PF00033 Cytochrom_B_N: Cytoch 86.9 10 0.00022 30.7 10.3 70 109-178 98-175 (188)
36 PF13706 PepSY_TM_3: PepSY-ass 86.2 0.94 2E-05 28.3 2.9 29 149-177 1-29 (37)
37 COG3038 CybB Cytochrome B561 [ 86.2 5.1 0.00011 34.0 8.2 93 79-176 12-108 (181)
38 PF10348 DUF2427: Domain of un 85.9 14 0.0003 28.4 10.9 92 74-178 12-103 (105)
39 PF04238 DUF420: Protein of un 84.1 2.4 5.2E-05 34.2 5.1 89 81-178 6-103 (133)
40 cd08765 Cyt_b561_CYBRD1 Verteb 84.0 8.2 0.00018 31.9 8.3 93 80-177 12-106 (153)
41 PF01292 Ni_hydr_CYTB: Prokary 81.0 28 0.0006 28.1 12.8 64 115-178 99-169 (182)
42 PF13703 PepSY_TM_2: PepSY-ass 78.4 8.8 0.00019 28.1 6.1 25 152-176 60-84 (88)
43 TIGR02125 CytB-hydogenase Ni/F 77.5 38 0.00083 28.2 10.6 98 79-177 7-137 (211)
44 PF04238 DUF420: Protein of un 76.5 38 0.00083 27.2 9.9 86 78-176 29-127 (133)
45 PF13703 PepSY_TM_2: PepSY-ass 75.9 12 0.00027 27.3 6.3 59 79-137 16-84 (88)
46 PF03929 PepSY_TM: PepSY-assoc 73.9 3.9 8.5E-05 23.9 2.5 25 113-137 1-25 (27)
47 PF01794 Ferric_reduct: Ferric 73.5 19 0.00041 27.1 7.0 53 120-173 1-54 (125)
48 PF10067 DUF2306: Predicted me 68.2 17 0.00038 27.5 5.7 29 149-177 2-30 (103)
49 COG3038 CybB Cytochrome B561 [ 67.5 10 0.00022 32.2 4.5 53 124-177 19-71 (181)
50 PLN02810 carbon-monoxide oxyge 62.2 1.1E+02 0.0024 27.0 13.0 127 79-218 46-176 (231)
51 PF13172 PepSY_TM_1: PepSY-ass 57.6 8.5 0.00018 23.3 1.8 25 113-137 5-29 (34)
52 PF13301 DUF4079: Protein of u 55.3 1.3E+02 0.0027 25.4 11.0 105 83-204 55-159 (175)
53 PF05393 Hum_adeno_E3A: Human 53.3 14 0.00031 27.8 2.7 30 201-230 37-69 (94)
54 PF10856 DUF2678: Protein of u 52.6 58 0.0013 25.8 6.1 53 115-176 29-81 (118)
55 PRK10639 formate dehydrogenase 51.3 1.5E+02 0.0033 25.1 11.3 68 109-177 103-174 (211)
56 KOG2234 Predicted UDP-galactos 49.6 2.2E+02 0.0047 26.7 10.4 57 86-144 147-205 (345)
57 PF14358 DUF4405: Domain of un 49.5 43 0.00093 22.9 4.6 49 121-169 6-58 (64)
58 PF12794 MscS_TM: Mechanosensi 49.3 2.1E+02 0.0047 26.2 15.8 102 72-178 115-222 (340)
59 PF10215 Ost4: Oligosaccaryltr 49.2 29 0.00064 21.6 3.2 25 195-221 8-32 (35)
60 PRK10263 DNA translocase FtsK; 48.9 1.3E+02 0.0029 33.0 10.0 61 83-143 20-88 (1355)
61 TIGR01583 formate-DH-gamm form 47.5 1.7E+02 0.0037 24.6 9.2 28 150-177 102-129 (204)
62 PF03189 Otopetrin: Otopetrin; 45.7 1.5E+02 0.0033 28.4 9.1 97 118-217 238-336 (441)
63 MTH00026 COX1 cytochrome c oxi 44.3 3.3E+02 0.0071 27.0 14.7 160 6-178 302-478 (534)
64 PRK11513 cytochrome b561; Prov 43.6 96 0.0021 25.7 6.6 66 78-143 82-163 (176)
65 PF02628 COX15-CtaA: Cytochrom 42.9 2.4E+02 0.0053 25.1 10.0 41 88-131 108-148 (302)
66 PF09990 DUF2231: Predicted me 41.5 1.5E+02 0.0032 22.1 8.3 44 87-130 13-56 (104)
67 PRK05419 putative sulfite oxid 41.4 2.3E+02 0.0049 24.3 11.5 55 111-171 38-92 (205)
68 PHA03049 IMV membrane protein; 37.9 40 0.00087 24.0 2.9 28 204-231 10-43 (68)
69 PF04531 Phage_holin_1: Bacter 37.6 1.6E+02 0.0036 21.5 6.8 61 148-219 4-64 (84)
70 PF06645 SPC12: Microsomal sig 35.0 1.7E+02 0.0037 21.0 7.2 52 159-229 13-68 (76)
71 PF11177 DUF2964: Protein of u 34.1 1.7E+02 0.0036 20.6 5.8 59 149-223 3-61 (62)
72 PF03653 UPF0093: Uncharacteri 32.5 2.7E+02 0.0058 22.4 12.8 126 85-219 10-146 (147)
73 cd01661 cbb3_Oxidase_I Cytochr 32.4 3.7E+02 0.008 26.2 9.6 24 121-144 94-117 (493)
74 CHL00070 petB cytochrome b6 30.6 81 0.0018 27.4 4.3 58 113-178 82-139 (215)
75 PRK03735 cytochrome b6; Provis 30.3 3.3E+02 0.0072 23.7 8.0 74 114-202 91-164 (223)
76 PLN02631 ferric-chelate reduct 29.8 1.6E+02 0.0035 30.1 6.8 24 150-173 186-209 (699)
77 PF11158 DUF2938: Protein of u 29.7 3.1E+02 0.0068 22.4 9.3 140 17-168 3-148 (150)
78 PRK10171 hydrogenase 1 b-type 29.4 3.7E+02 0.0081 23.2 9.0 59 79-137 18-83 (235)
79 PF01654 Bac_Ubq_Cox: Bacteria 29.4 5.2E+02 0.011 24.8 10.0 75 152-231 176-251 (436)
80 PF14358 DUF4405: Domain of un 28.7 1.9E+02 0.0041 19.6 5.5 41 53-93 8-55 (64)
81 PF13630 SdpI: SdpI/YhfL prote 28.4 56 0.0012 22.7 2.4 29 149-177 20-48 (76)
82 PRK10171 hydrogenase 1 b-type 27.9 4E+02 0.0086 23.0 9.3 47 53-99 24-79 (235)
83 PF02628 COX15-CtaA: Cytochrom 27.7 4.4E+02 0.0095 23.4 12.9 46 115-165 254-299 (302)
84 TIGR00351 narI respiratory nit 27.0 4.2E+02 0.0091 23.0 9.7 51 87-139 93-143 (224)
85 cd00284 Cytochrome_b_N Cytochr 26.9 1.6E+02 0.0036 25.1 5.5 62 112-183 70-131 (200)
86 PF10160 Tmemb_40: Predicted m 26.5 4.8E+02 0.01 23.5 14.7 159 4-167 39-204 (261)
87 PRK03735 cytochrome b6; Provis 26.5 99 0.0022 27.0 4.1 24 119-145 127-150 (223)
88 PF07857 DUF1632: CEO family ( 26.3 2E+02 0.0042 25.7 6.0 59 158-221 80-139 (254)
89 PF05961 Chordopox_A13L: Chord 25.8 1.1E+02 0.0024 21.9 3.4 28 204-231 10-43 (68)
90 PF10225 DUF2215: Uncharacteri 25.4 2.6E+02 0.0056 24.7 6.6 28 67-94 114-142 (249)
91 MTH00167 COX1 cytochrome c oxi 25.2 6.6E+02 0.014 24.7 12.2 148 7-168 302-463 (512)
92 PF10856 DUF2678: Protein of u 24.9 85 0.0019 24.8 3.0 61 76-143 24-84 (118)
93 COG2322 Predicted membrane pro 23.9 3.5E+02 0.0075 22.9 6.6 27 152-178 118-144 (177)
94 MTH00033 CYTB cytochrome b; Pr 22.8 2.7E+02 0.0059 26.3 6.6 81 88-178 36-131 (383)
95 PF02322 Cyto_ox_2: Cytochrome 22.0 6.2E+02 0.013 23.2 11.1 62 114-178 156-217 (328)
96 PF12270 Cyt_c_ox_IV: Cytochro 21.8 4.3E+02 0.0093 21.4 6.7 22 157-178 6-27 (137)
97 PRK15006 thiosulfate reductase 21.8 5.6E+02 0.012 22.6 10.3 26 151-176 175-201 (261)
98 cd00284 Cytochrome_b_N Cytochr 21.6 5.1E+02 0.011 22.1 8.6 59 119-177 24-96 (200)
99 KOG2290 Rhomboid family protei 21.5 4.6E+02 0.01 25.9 7.8 42 63-104 580-621 (652)
100 PF13903 Claudin_2: PMP-22/EMP 21.5 3.9E+02 0.0085 20.7 7.6 18 83-100 104-121 (172)
101 CHL00070 petB cytochrome b6 21.3 5.4E+02 0.012 22.3 8.7 62 117-178 33-108 (215)
102 MTH00116 COX1 cytochrome c oxi 20.9 8.1E+02 0.018 24.1 10.6 153 7-173 302-468 (515)
103 KOG4026 Uncharacterized conser 20.8 2.6E+02 0.0057 24.3 5.5 15 84-98 114-128 (207)
104 PF03729 DUF308: Short repeat 20.8 2.6E+02 0.0057 18.4 6.3 37 131-173 6-42 (72)
105 PF06609 TRI12: Fungal trichot 20.4 7.1E+02 0.015 25.0 9.2 57 118-176 196-259 (599)
106 TIGR01583 formate-DH-gamm form 20.4 5.2E+02 0.011 21.6 11.6 67 110-176 101-171 (204)
107 COG4097 Predicted ferric reduc 20.1 1.4E+02 0.0031 28.5 4.0 18 152-169 75-92 (438)
108 PLN02292 ferric-chelate reduct 20.0 1.3E+02 0.0028 30.8 4.0 22 151-172 204-225 (702)
No 1
>PLN02810 carbon-monoxide oxygenase
Probab=100.00 E-value=4.7e-68 Score=456.78 Aligned_cols=229 Identities=46% Similarity=0.891 Sum_probs=219.4
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHheeccCCCcchhH
Q 026868 1 MAVPVVRFPIFLVIRVIGVIISTLVLTWTVQYRGGLSLASDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVSGTKKLRK 80 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~lgi~~~~lv~~W~~~~~gG~~w~~~~~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~~~k~~~~ 80 (231)
|+.++.+.|++.++|++|+++++++++|+.+||||++|+++|++.+|||||+||++||+++++|||++||..|.+|+.+|
T Consensus 1 ~~~~~~~~~~~~~a~~lg~~~~vlvl~W~~~~rgG~aw~~~~~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K 80 (231)
T PLN02810 1 MAVGINALPLTFVAHALAVIGAIMVLVWSIYYRGGLAWEATNKNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKK 80 (231)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCceeeehHHHHHHHHHHHhhHHHHHhhccccccchHH
Confidence 56788899999999999999999999999999999999987778899999999999999999999999999887889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHH
Q 026868 81 LVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLG 160 (231)
Q Consensus 81 ~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G 160 (231)
.+|+.+|.+|++++++|++++|+|||++++|||||+|||+|++|++++.+||+.|+..|++|+.+++.|+.++|+|+++|
T Consensus 81 ~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~G 160 (231)
T PLN02810 81 LIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFG 160 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCCcccCC
Q 026868 161 VYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPEN--GKSEVLRAS 230 (231)
Q Consensus 161 ~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~--~~~~~~~~~ 230 (231)
..+|+++++|+.+|+.||++|.++++| ++|++|+.++|++|+++++||++|++.++++++ |+++.|.++
T Consensus 161 l~if~LAiata~lGi~EKl~Fl~~~~~-~~~~~Ea~lvN~~Glliv~fg~~V~~~~~~~~~~~~~~~~~~~~ 231 (231)
T PLN02810 161 LFVYILAVGNAALGFLEKLTFLESGGL-DKYGSEALLVNFTAIITILYGAFVVLTALAQSPSDEDDYSYSAI 231 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc-CCCCchhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccC
Confidence 999999999999999999999888788 999999999999999999999999999999887 677777764
No 2
>PLN02680 carbon-monoxide oxygenase
Probab=100.00 E-value=8.3e-65 Score=438.93 Aligned_cols=227 Identities=82% Similarity=1.368 Sum_probs=214.6
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHheeccCCCcchhH
Q 026868 1 MAVPVVRFPIFLVIRVIGVIISTLVLTWTVQYRGGLSLASDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVSGTKKLRK 80 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~lgi~~~~lv~~W~~~~~gG~~w~~~~~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~~~k~~~~ 80 (231)
|+.++.+.|...++|++|+++++++++|+.+||||++|++||++.+|||||++|++||+++++|||++||..|.+|+.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~g~~~~~lv~~W~~~~rgG~aw~~~~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K 80 (232)
T PLN02680 1 MAVPVIRFPIFMLVRLLGVIVAALVLTWTVHYRGGLALSSDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKK 80 (232)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCcceEechHHHHHHHHHHHHHHHHhccccccccchhHH
Confidence 56778889999999999999999999999999999999977788899999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHH
Q 026868 81 LVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLG 160 (231)
Q Consensus 81 ~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G 160 (231)
.+|+.+|.+|++|+++|+++++++||+++++||||+|||+|++|++++.+|++.|+.+|++|+.+++.|+.++|+|+++|
T Consensus 81 ~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G 160 (232)
T PLN02680 81 LVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFG 160 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhcc-ccccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCC---CCccc
Q 026868 161 VYIYALAVATAATGILEKVTFLQTN-HVISRYSTEALLVNSLGILIVVLGGFVILALITPENGK---SEVLR 228 (231)
Q Consensus 161 ~~~~~l~~~t~~lGl~ek~~f~~~~-~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~~~---~~~~~ 228 (231)
+++|+++++|+.+|+.||++|.+++ ++ ++|++|+.++|++|+++++||++|++.++.|.+.+ |.+|.
T Consensus 161 ~~if~LaiaT~~lG~~Ek~~f~~~~~~~-~~~~~e~~lvN~~gl~~~~fg~~V~~~v~~p~~~~~~~~~~~~ 231 (232)
T PLN02680 161 IYIYALAVATATTGILEKATFLQSNKVI-SRYSTEAMLVNSLGILIVVLGGFVILAIVTPLNGKGDVLRGST 231 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcc-CCCCchhhhHhHHHHHHHHHHHHHHHhhccccccccccccccC
Confidence 9999999999999999999998754 56 99999999999999999999999999999998733 44453
No 3
>PLN02351 cytochromes b561 family protein
Probab=100.00 E-value=1.1e-62 Score=426.56 Aligned_cols=218 Identities=46% Similarity=0.912 Sum_probs=201.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhcCcccccC-CCCCccc-chhHHHHHHHHHHHHHHHHHheeccCCCcchhHHH
Q 026868 5 VVRFPIFLVIRVIGVIISTLVLTWTVQYRGGLSLAS-DNKDLIF-NVHPVLMVIGLVLLNGEAMLAYKTVSGTKKLRKLV 82 (231)
Q Consensus 5 ~~~~~~~~~~~~lgi~~~~lv~~W~~~~~gG~~w~~-~~~~~~F-~~HP~lM~~gfv~l~~~ail~~r~~~~~k~~~~~i 82 (231)
.+-.|++.++|++|+++++++++|+.+||||++|++ ++++.+| ||||+||++||+++++|||++||..|.+|+.+|.+
T Consensus 7 ~~~~~~~~~a~~lGl~~~~lvl~W~~~~rgG~aw~~~~~~~~iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~l 86 (242)
T PLN02351 7 SSLLPLLLFARLSGLVVAVLVLYWALFFKSSFLPQSTSQEDLVYAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSV 86 (242)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCccceeecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHH
Confidence 344588999999999999999999999999999996 4455567 79999999999999999999999988788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCC-CCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHH
Q 026868 83 HLSLQFIAFLLSLIGVWAALKFHNDKG-IDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGV 161 (231)
Q Consensus 83 H~~Lq~la~~~~~iG~~ai~~~k~~~~-~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~ 161 (231)
|+.+|.+|++++++|+++ ++|++++ ++||||+|||+|++|++++.+||+.|+.+|++|+.+++.|+.++|+|+++|+
T Consensus 87 H~~Lh~~Ali~~vvGl~a--~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl 164 (242)
T PLN02351 87 HLWLQGLALASGVFGIWT--KFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGL 164 (242)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHH
Confidence 999999999999999999 5565554 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhcc-ccccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 026868 162 YIYALAVATAATGILEKVTFLQTN-HVISRYSTEALLVNSLGILIVVLGGFVILALITPENGKSE 225 (231)
Q Consensus 162 ~~~~l~~~t~~lGl~ek~~f~~~~-~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~~~~~ 225 (231)
.+|+++++|+.+|+.||++|.+++ +| +++++|+.++|++|+++++||++|++.+++|+|+||+
T Consensus 165 ~if~LaiaTa~lGl~EKl~F~~~~~~y-~~~~~Ea~lvN~~Glliv~fG~~Vv~~~~~p~~kr~~ 228 (242)
T PLN02351 165 YTYGLAVATAETGLLEKLTFLQTKRNV-SKHGSESMVVNGLGLGLALLSGIVILAAVLPKYQSHS 228 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc-ccCCchhhhHHHHHHHHHHHHHHHHHhhcCccccCCC
Confidence 999999999999999999999854 66 9999999999999999999999999999999996654
No 4
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=100.00 E-value=5.9e-60 Score=406.30 Aligned_cols=216 Identities=47% Similarity=0.851 Sum_probs=206.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHheeccC-CCcchhHHHHHHH
Q 026868 8 FPIFLVIRVIGVIISTLVLTWTVQYRGGLSLASDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVS-GTKKLRKLVHLSL 86 (231)
Q Consensus 8 ~~~~~~~~~lgi~~~~lv~~W~~~~~gG~~w~~~~~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~-~~k~~~~~iH~~L 86 (231)
--.+.++|++|..+++++++|+++||||++|++|+ ++.||+||++|.+||+++.+||+++||.+| .+|+.+|.+|..+
T Consensus 17 ~~~~~~s~l~G~i~v~lvl~W~~~yr~Glaw~~~~-~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~L 95 (245)
T KOG1619|consen 17 LIIVVVSHLLGFITVVLVLYWVNTYRGGLAWSSSP-NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGL 95 (245)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCCc-chhcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHHH
Confidence 34677899999999999999999999999999754 899999999999999999999999999977 7999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHH
Q 026868 87 QFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYAL 166 (231)
Q Consensus 87 q~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l 166 (231)
|..|++++++|++++|++||+++++||||+|||+|+.+++++.+||+.||.+|++|+.+++.|++++|+|+++|+.+|.+
T Consensus 96 H~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~l 175 (245)
T KOG1619|consen 96 HIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFIL 175 (245)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 026868 167 AVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPENGKSE 225 (231)
Q Consensus 167 ~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~~~~~ 225 (231)
+++|+.+|+.||.+|.+.+++ +++++|+.++|++|+.++++|++|++.+++|+|+||.
T Consensus 176 ai~ta~~Gl~ek~~f~~~~~~-s~~~~e~~l~n~~gv~~il~g~~Vl~~v~~~~~kr~s 233 (245)
T KOG1619|consen 176 AIVTALTGLLEKLTFLCFGDL-STKNPEGYLVNFLGVFIILFGVLVLTLVTPPPWKRPS 233 (245)
T ss_pred HHHHHHHHHHHHHHHhhcCcc-cccCHHHHHHHHHHHHHHHHHHHheEEEecCCCCCCC
Confidence 999999999999999988777 9999999999999999999999999999999986654
No 5
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.4e-59 Score=403.47 Aligned_cols=200 Identities=44% Similarity=0.797 Sum_probs=188.8
Q ss_pred HHHHHHHHhhcCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHheeccC-CCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 026868 23 TLVLTWTVQYRGGLSLASDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVS-GTKKLRKLVHLSLQFIAFLLSLIGVWAA 101 (231)
Q Consensus 23 ~lv~~W~~~~~gG~~w~~~~~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~-~~k~~~~~iH~~Lq~la~~~~~iG~~ai 101 (231)
+++++|+.+||||++|++ ++.+|||||++|++||+++++||+++||..| .+|+.+|.+|+.+|.+|++++++|++++
T Consensus 2 ~l~~~W~~~~rgG~~~~~--~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~av 79 (214)
T cd08764 2 VLVGIWLGKFRGGFSWTG--PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAV 79 (214)
T ss_pred EEEeehHHHcCCccccCC--CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999984 6679999999999999999999999999887 5677789999999999999999999999
Q ss_pred HhhcccC--CCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHHH
Q 026868 102 LKFHNDK--GIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKV 179 (231)
Q Consensus 102 ~~~k~~~--~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek~ 179 (231)
|++||++ +++||||+|||+|+++++++.+|++.|+.+|++|+.+++.|+.++|+|+++|+++|+++++|+.+|+.||.
T Consensus 80 f~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~ 159 (214)
T cd08764 80 FDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKA 159 (214)
T ss_pred HHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 99999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HhhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 026868 180 TFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPENGKSEV 226 (231)
Q Consensus 180 ~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~~~~~~ 226 (231)
+|.+++ | +++++|+.++|++|+++++||++|++.+++|+|+|||.
T Consensus 160 ~f~~~~-~-~~~~~e~~l~N~~gl~~~~fg~~V~~~~~~~~~kr~~~ 204 (214)
T cd08764 160 FFSLNK-Y-SNLPAEGVLGNFIGIVLVIFGGLVVYLVTEPDYKRIEL 204 (214)
T ss_pred Hhcccc-c-ccCChhHHHHHHHHHHHHHHHHHHHHhccCcccCCCCC
Confidence 999864 6 99999999999999999999999999999999977653
No 6
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=5e-52 Score=346.64 Aligned_cols=171 Identities=42% Similarity=0.736 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHheeccC---CCcchhHHHHHHHHHH
Q 026868 13 VIRVIGVIISTLVLTWTVQYRGGLSLASDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVS---GTKKLRKLVHLSLQFI 89 (231)
Q Consensus 13 ~~~~lgi~~~~lv~~W~~~~~gG~~w~~~~~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~---~~k~~~~~iH~~Lq~l 89 (231)
+.-++|+++++++++|+.+||||++||+++ ++|||||+||++||+++++|||++||..+ .+|+.+|.+|+.+|.+
T Consensus 3 ~~~~lg~~~~~lv~~W~~~~rgG~~w~~~~--~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~ 80 (179)
T cd08762 3 LLGILGIACVVLVVHWNQMWRGGFAWDGSS--KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLL 80 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCCC--CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHH
Confidence 446799999999999999999999999643 48999999999999999999999999755 3788899999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHH
Q 026868 90 AFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVA 169 (231)
Q Consensus 90 a~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~ 169 (231)
|++++++|++++|++||+++++|+||+|||+|++|++++.+|++.|+.+|++|+.+++.|++++|+|+++|+.+|+++++
T Consensus 81 Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laia 160 (179)
T cd08762 81 AFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIA 160 (179)
T ss_pred HHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHhhhcc
Q 026868 170 TAATGILEKVTFLQTN 185 (231)
Q Consensus 170 t~~lGl~ek~~f~~~~ 185 (231)
|+.+|+.||++|..++
T Consensus 161 t~~lGl~ek~~f~~~~ 176 (179)
T cd08762 161 SCISGINEKLFFSLKN 176 (179)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999998753
No 7
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=100.00 E-value=2.9e-47 Score=311.91 Aligned_cols=149 Identities=42% Similarity=0.734 Sum_probs=141.0
Q ss_pred CcccccCCCCCcccchhHHHHHHHHHHHHHHHHHheeccC---CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 026868 34 GGLSLASDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVS---GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGI 110 (231)
Q Consensus 34 gG~~w~~~~~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~---~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~ 110 (231)
|||+||+ +..+|||||+||++||+++++|||++||..+ .+|+.+|++|+.+|.+|++|+++|++++|+|||++++
T Consensus 1 ~g~~w~~--~~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~ 78 (153)
T cd08765 1 EGLGWDG--GAAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNI 78 (153)
T ss_pred CCCCCCC--CCCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 7999974 4469999999999999999999999999643 4689999999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHHHHhhhc
Q 026868 111 DNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQT 184 (231)
Q Consensus 111 ~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~ 184 (231)
+||||+|||+|++|++++.+|++.|+.+|++|+.+.+.|++++|+|+++|+++|+++++|+.+|+.||++|..+
T Consensus 79 ~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek~~f~~~ 152 (153)
T cd08765 79 PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEKLIFSLK 152 (153)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999763
No 8
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=3.3e-46 Score=303.59 Aligned_cols=144 Identities=65% Similarity=1.206 Sum_probs=139.1
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHHheeccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchh
Q 026868 40 SDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSW 119 (231)
Q Consensus 40 ~~~~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~ 119 (231)
||||.++|||||++|++||+++|+|||++||..|.+|+.+|.+|+++|.+|++|+++|++++|+|||+++++||||+|||
T Consensus 1 ~~~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSw 80 (144)
T cd08766 1 SDNKGLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSW 80 (144)
T ss_pred CCCCcceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHH
Confidence 36789999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 026868 120 LGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQ 183 (231)
Q Consensus 120 lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek~~f~~ 183 (231)
+|++|++++.+|++.|+.+|++|+.++++|++++|+|+++|+++|+++++|+.+|+.||.+|.|
T Consensus 81 lGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek~~f~~ 144 (144)
T cd08766 81 LGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEKLTFLQ 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999888999999999999999999999999999999998864
No 9
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.1e-43 Score=288.50 Aligned_cols=137 Identities=41% Similarity=0.774 Sum_probs=132.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHheeccC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHH
Q 026868 45 LIFNVHPVLMVIGLVLLNGEAMLAYKTVS-GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLA 123 (231)
Q Consensus 45 ~~F~~HP~lM~~gfv~l~~~ail~~r~~~-~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~ 123 (231)
++|||||++|++||+++++||+++||..| .+|+.+|++|+++|.+|++++++|+.++++|||+++++||||+|||+|++
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~ 84 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGIL 84 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHH
Confidence 49999999999999999999999999877 68889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHHHHh
Q 026868 124 CVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTF 181 (231)
Q Consensus 124 ~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek~~f 181 (231)
+++++.+|++.|+..|++|+.+++.|+.++|+||++|+++|+++++|+.+|+.||.+|
T Consensus 85 t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek~~f 142 (143)
T cd08763 85 TFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEKLLF 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998888999999999999999999999999999999876
No 10
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2.3e-32 Score=229.97 Aligned_cols=137 Identities=31% Similarity=0.454 Sum_probs=126.2
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHheeccC----CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 026868 42 NKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVS----GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLH 117 (231)
Q Consensus 42 ~~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~----~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~H 117 (231)
+.++.|+|||++|++||+++|+||++.+|... .+|+.++++|+.+|.++++++++|+.+++.||++++++||+|+|
T Consensus 16 ~~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H 95 (183)
T cd08761 16 PGTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWH 95 (183)
T ss_pred CccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchh
Confidence 45689999999999999999999999887532 27888899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhcccCCCc--ccccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 118 SWLGLACVFLFGIQWAAGFTTFWYPGGSK--NGRASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 118 s~lGl~~~il~~lQ~~~G~~~~~~p~~~~--~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
||+|+++++++.+|++.|+..++.|...+ +.|+.++++||++|+++++++++|+.+|++|+
T Consensus 96 ~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 158 (183)
T cd08761 96 GILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLETR 158 (183)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999999999999999888776554 66788999999999999999999999999983
No 11
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.98 E-value=3e-32 Score=217.28 Aligned_cols=130 Identities=52% Similarity=0.852 Sum_probs=122.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHheeccC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHH
Q 026868 46 IFNVHPVLMVIGLVLLNGEAMLAYKTVS-GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLAC 124 (231)
Q Consensus 46 ~F~~HP~lM~~gfv~l~~~ail~~r~~~-~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~ 124 (231)
.|+|||++|++||+++++||++.+|..+ .+|+.++++|+.+|.++++++++|+.+++++|++++++||+|+|||+|+++
T Consensus 1 ~f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~ 80 (131)
T cd08554 1 EFNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLAT 80 (131)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHH
Confidence 3799999999999999999999999876 578889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhh
Q 026868 125 VFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGI 175 (231)
Q Consensus 125 ~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl 175 (231)
++++.+|++.|+..++.|..+++.|+..+++||++|+++++++++|+.+|+
T Consensus 81 ~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 81 VLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999888876667889999999999999999999999984
No 12
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.97 E-value=3.1e-31 Score=212.07 Aligned_cols=133 Identities=38% Similarity=0.565 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHHHHHHHHHheec--cC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHH
Q 026868 49 VHPVLMVIGLVLLNGEAMLAYKT--VS-GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACV 125 (231)
Q Consensus 49 ~HP~lM~~gfv~l~~~ail~~r~--~~-~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~ 125 (231)
|||++|++||++++|||++++|. .+ .+|+.++++|+.+|.++++++++|+.+++.+|++++++||+|+|+|+|++++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~ 80 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF 80 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence 79999999999999999999986 32 4778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHHHHh
Q 026868 126 FLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTF 181 (231)
Q Consensus 126 il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek~~f 181 (231)
+++.+|.+.|+..++.|+.+++.|+.+.++|+++|+++++++++|+.+|+.|+..|
T Consensus 81 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~~~f 136 (137)
T PF03188_consen 81 VLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEKAWF 136 (137)
T ss_pred HHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888877778888999999999999999999999999998766
No 13
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.97 E-value=5.6e-30 Score=203.96 Aligned_cols=127 Identities=43% Similarity=0.747 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHHHHHHHHheec-cC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHH
Q 026868 49 VHPVLMVIGLVLLNGEAMLAYKT-VS-GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVF 126 (231)
Q Consensus 49 ~HP~lM~~gfv~l~~~ail~~r~-~~-~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~i 126 (231)
|||++|++||++++|||++.+|. .+ .+|+.++++|+.+|.++++++++|+++++++|++++++||+|+|||+|+++++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~ 80 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFV 80 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHH
Confidence 79999999999999999999995 33 57888999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhh
Q 026868 127 LFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGI 175 (231)
Q Consensus 127 l~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl 175 (231)
++.+|++.|+..+..|+.+.+.|+.++++|+++|+++++++++|+.+|+
T Consensus 81 l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 81 LAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999987776655666788999999999999999999999985
No 14
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.91 E-value=4e-23 Score=174.57 Aligned_cols=132 Identities=23% Similarity=0.230 Sum_probs=119.4
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHheeccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHH
Q 026868 43 KDLIFNVHPVLMVIGLVLLNGEAMLAYKTVSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGL 122 (231)
Q Consensus 43 ~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl 122 (231)
++..+++|+++|+++|.+++|+|++.+|.++.+++.+.++|+.+|+++++++++|+..++.++ ..+.+|+++.|+|+|+
T Consensus 32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~-~~~~~~~~~~H~~lGl 110 (191)
T cd08760 32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV-QGGGGSLNNAHAILGI 110 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcCcchhhhH
Confidence 567899999999999999999999999975555677888999999999999999999999987 5678999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 123 ACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 123 ~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
++++++.+|.+.|++ .|...++.|+.+++.|++.|+++++++++|+.+|+.+.
T Consensus 111 ~~~~l~~lQ~~~G~~---~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~ 163 (191)
T cd08760 111 IVLALAILQPLLGLL---RPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLA 163 (191)
T ss_pred HHHHHHHHHHHHHHh---cCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999996 45555557777899999999999999999999999875
No 15
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=98.61 E-value=3.3e-07 Score=71.05 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=72.6
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHheeccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhH
Q 026868 42 NKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLG 121 (231)
Q Consensus 42 ~~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lG 121 (231)
+.+....+|..+|+++++++.|-+++.-+ .+ .+.|...|++++++.++|+......++..+.--..+.|+.+|
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~-~~------sr~~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~H~k~g 85 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVLGN-AR------SRWHLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNAHGKMG 85 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH-cc------chHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 35678899999999999999999987433 32 236999999999999999998766555432222378999999
Q ss_pred HHHHHHHHHHHhhhhh
Q 026868 122 LACVFLFGIQWAAGFT 137 (231)
Q Consensus 122 l~~~il~~lQ~~~G~~ 137 (231)
.+.+++..+|.++|+.
T Consensus 86 ~il~~l~~~q~~~gv~ 101 (105)
T PF10348_consen 86 WILFVLMIVQVILGVI 101 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999996
No 16
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=97.70 E-value=2e-06 Score=80.97 Aligned_cols=125 Identities=21% Similarity=0.227 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHHHHHHheeccCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHH
Q 026868 49 VHPVLMVIGLVLLNGEAMLAYKTVSGT---KKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACV 125 (231)
Q Consensus 49 ~HP~lM~~gfv~l~~~ail~~r~~~~~---k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~ 125 (231)
-|+++|..+..+++|-+++..|.++.. ...+..+|..+|..++.+...|+...-..-++ ....-++.|..+|+...
T Consensus 214 ~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~-s~~~~~~~h~~~G~~~~ 292 (403)
T KOG4293|consen 214 THGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNE-SDGTVYSAHTDLGIILL 292 (403)
T ss_pred cHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccC-CCceeeeecccchhHHH
Confidence 399999999999999999999887632 56678899999999988877777754433222 34566899999999999
Q ss_pred HHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHH
Q 026868 126 FLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILE 177 (231)
Q Consensus 126 il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~e 177 (231)
++.++|++..+. -|....+.|+....+|+..|+...+++.+++..|+..
T Consensus 293 ~l~~lQ~~~~l~---Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l 341 (403)
T KOG4293|consen 293 VLAFLQPLALLL---RPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLEL 341 (403)
T ss_pred HHHHHHHHHHHh---cCCcccCceeccceeeeecCcceeeehhhHHhhhHhh
Confidence 999999998885 5776777788888999999999999999999999873
No 17
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=97.50 E-value=0.0016 Score=54.95 Aligned_cols=88 Identities=25% Similarity=0.252 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchh
Q 026868 80 KLVHLSLQFIAFLLSLIGVW----AALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPW 155 (231)
Q Consensus 80 ~~iH~~Lq~la~~~~~iG~~----ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~ 155 (231)
+..|.-+-...+..+..|.. ..+.+. .+-|.|.|-|.|+..+.++..+....-. .+++ .++..++.
T Consensus 80 r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~----~~lf~spH~~~Gl~~~~L~~~s~al~~~--i~~g----~~~~~R~l 149 (175)
T PF13301_consen 80 RDRHYRLGFALLAFMGLGALGGQLGTYRQN----GKLFWSPHLWAGLAVVGLMAFSAALVPQ--IQKG----NRPWARRL 149 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHcC----CCCccCchHHHHHHHHHHHHHHHHHHHH--HccC----CchhHHHH
Confidence 55676665544444333333 333332 3478999999999999999998776553 2332 24567789
Q ss_pred hHHHHHHHHHHHHHHHHHhhHH
Q 026868 156 HVFLGVYIYALAVATAATGILE 177 (231)
Q Consensus 156 H~~~G~~~~~l~~~t~~lGl~e 177 (231)
|...+..++++-..-..+|...
T Consensus 150 Hi~lN~~~l~Lf~~q~itG~~i 171 (175)
T PF13301_consen 150 HIYLNSLALLLFAWQAITGWRI 171 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999763
No 18
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=97.12 E-value=0.011 Score=46.82 Aligned_cols=125 Identities=25% Similarity=0.320 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhhc-ccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHH
Q 026868 82 VHLSLQFIAFLLSL-IGVWAALKFH-NDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFL 159 (231)
Q Consensus 82 iH~~Lq~la~~~~~-iG~~ai~~~k-~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~ 159 (231)
+|.+++.+|+.+.. .|+.+...++ +..+++.....|..+-.+.+++.++-....+. .+ ..+.++...-.|.+.
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~----~~-~~~~~~h~~s~H~~l 75 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFI----NK-NRNGKPHFKSWHSIL 75 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHH----hc-cccCCCCCCCchhhh
Confidence 48999999998755 5555544322 23356777889999988777776654444442 11 222234567799999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHHHHHHHHHHHH
Q 026868 160 GVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVIL 214 (231)
Q Consensus 160 G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~ 214 (231)
|.+++++.....+.|+... +..+.+. +..+.-...=..+|.++.+.+...++
T Consensus 76 G~~~~~l~~~Q~~~G~~~~--~~~~~~~-~~r~~~~~~H~~~G~~~~~l~~~~i~ 127 (137)
T PF03188_consen 76 GLATFVLALLQPLLGFFRF--FMPGLPR-KRRPIWNKWHRWLGYLIYVLAIATIF 127 (137)
T ss_pred hHHHHHHHHHHHHHHHHHH--ccCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 3221111 11111111234677776666665544
No 19
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.92 E-value=0.015 Score=45.91 Aligned_cols=125 Identities=19% Similarity=0.186 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHH
Q 026868 82 VHLSLQFIAFLLS-LIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLG 160 (231)
Q Consensus 82 iH~~Lq~la~~~~-~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G 160 (231)
+|..+..+|+... -.|....-...+..+++....+|-++..++.++.+.-...++... + +..++...-.|.++|
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~---~--~~~~~~~~s~H~~lG 75 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISH---N--ESGIANFYSLHSWLG 75 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc---c--ccCCCCccchhHHHH
Confidence 4889999999654 444444322123335566778899999998888777666665421 1 112345778999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHHHHHHHHHHHH
Q 026868 161 VYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVIL 214 (231)
Q Consensus 161 ~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~ 214 (231)
.+++++.......|+... +....+. +....-...=..+|.++.+.++..++
T Consensus 76 l~~~~l~~~Q~~~G~~~~--~~~~~~~-~~r~~~~~~H~~~G~~~~~la~~~~~ 126 (129)
T smart00665 76 LAAFVLAGLQWLSGFLRP--LPPGLPS-KYRSYLNPYHRFVGLAAFILAIVTIF 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHh--cCCccch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999852 2211000 11111112223678887777766543
No 20
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=96.78 E-value=0.035 Score=43.81 Aligned_cols=125 Identities=22% Similarity=0.187 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHH
Q 026868 81 LVHLSLQFIAFLL-SLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFL 159 (231)
Q Consensus 81 ~iH~~Lq~la~~~-~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~ 159 (231)
..|..+..+|+.. ...|+. +++.-+..+++...-+|..+..++.++..+-...++. . + ..+.++.....|.++
T Consensus 3 ~~H~~lm~~g~~~l~~~~il-~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~---~-~-~~~~~~h~~s~Hs~l 76 (131)
T cd08554 3 NWHPLLMVIGFVFLMGEALL-VYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFL---F-H-NAGGIANLYSLHSWL 76 (131)
T ss_pred CccHHHHHHHHHHHHHHHHH-HhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH---h-c-cccCcccchhHHHHH
Confidence 3699999999875 444443 3333222344555678999999888877765555543 1 1 122234567899999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHHHHHHHHHHHH
Q 026868 160 GVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVIL 214 (231)
Q Consensus 160 G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~ 214 (231)
|++++++..+....|+... +..++.. ++-..-...=...|.++.+.++...+
T Consensus 77 Gl~~~~l~~~q~~~G~~~~--~~~~~~~-~~r~~~~~~H~~~G~~~~~la~~t~~ 128 (131)
T cd08554 77 GLATVLLFLLQFLSGFVLF--LLPLLRL-SYRSSLLPFHRFFGLAIFVLAIATIL 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH--Hhccccc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 3222110 10111222233678877776666543
No 21
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.20 E-value=0.14 Score=42.96 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=66.8
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHheeccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCCCccccchhh
Q 026868 43 KDLIFNVHPVLMVIGLVLLNGEAMLAYKTVSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDK--GIDNFYSLHSWL 120 (231)
Q Consensus 43 ~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~--~~~hf~S~Hs~l 120 (231)
.+..|.+|-.+|.+++++-..-.++.+..-..++......|..+-.+.+++.++=....+..++.. ..+-+...|.++
T Consensus 65 ~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~ 144 (191)
T cd08760 65 DPVWFYLHAGLQLLAVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWL 144 (191)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHH
Confidence 457899999999998887544434444321223344566899988887777665444433333322 355667889999
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 026868 121 GLACVFLFGIQWAAGFTT 138 (231)
Q Consensus 121 Gl~~~il~~lQ~~~G~~~ 138 (231)
|.++.++-..|...|+-.
T Consensus 145 G~~~~~l~~v~i~~G~~~ 162 (191)
T cd08760 145 GRAALILAIVNIFLGLDL 162 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999974
No 22
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.01 E-value=0.23 Score=41.54 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchh
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALKFHND---KGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPW 155 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~~k~~---~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~ 155 (231)
....|..++.+++.+..-.....++..+. .+++.-...|.++..++..+.++-....+ ..+ .+..++-+.-.
T Consensus 20 ~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~----~~~-~~~~~~hf~s~ 94 (183)
T cd08761 20 LFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIY----YNK-ERNGKPHFTSW 94 (183)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----Hhc-ccCCCCCccch
Confidence 45689999999999755555544442211 24556678899999988877665333222 222 22234567789
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHhhhc-cc-cccCCchhHHHHHHHHHHHHHHHHHHHHHhccC
Q 026868 156 HVFLGVYIYALAVATAATGILEKVTFLQT-NH-VISRYSTEALLVNSLGILIVVLGGFVILALITP 219 (231)
Q Consensus 156 H~~~G~~~~~l~~~t~~lGl~ek~~f~~~-~~-~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~ 219 (231)
|.++|..++++...+...|+... +... .+ . ++...-...=...|.++.+.+......=...
T Consensus 95 H~~lGl~~~~l~~~Q~~~G~~~~--~~~~~~~~~-~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 95 HGILGLVTVILIVLQALGGLALL--YPPGLRRGE-SKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHH--hhHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999754 2111 00 0 1111111122267888777777766655544
No 23
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.98 E-value=0.19 Score=41.00 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHH
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVF 158 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~ 158 (231)
.-..|-.++.+++++...--..++...+..+++.-+..|.+++++++++..+ |+..-+.-+ .+...+.+.-.|.+
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~----Gl~av~~~h-~~~~~~hf~SlHsw 80 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLV----GLVAVFDYH-QANGYPDMYSLHSW 80 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHH----HHHHHHHHc-cccCCCccccHHHH
Confidence 4458999999999986655556665433334555677999999988877664 554322211 22234577889999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhccccccCCchhHHH--HHHHHHHHHHHHHHHHHHh
Q 026868 159 LGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALL--VNSLGILIVVLGGFVILAL 216 (231)
Q Consensus 159 ~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~--~n~~gl~~~~~~~~v~~~~ 216 (231)
+|+.++++-......|+.. |... +...+. ++.+. =-+.|+++.+.++.....=
T Consensus 81 lGl~t~~L~~lQ~~~G~~~---f~~P-~~~~~~-r~~~~p~H~~~G~~~f~la~~t~~lG 135 (143)
T cd08763 81 CGILTFVLYFLQWLIGFSF---FLFP-GASFTL-RSQYKPLHEFFGRALFLSSVGTSLLG 135 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHcC-CCchHH-HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999865 3211 110111 11111 1257777777666655443
No 24
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=95.97 E-value=0.049 Score=44.55 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh----hcccCCCCCccccchhhHHHHHHHHHHHHhhhhhh---------------
Q 026868 78 LRKLVHLSLQFIAFLLSLIGVWAALK----FHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTT--------------- 138 (231)
Q Consensus 78 ~~~~iH~~Lq~la~~~~~iG~~ai~~----~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~--------------- 138 (231)
..+..||..-++-+++.+.|+...+. .......+....+|.++|++..++.++..+.++..
T Consensus 7 ~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 7 FTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 34678999998888888999987632 22233456678999999999999999999999875
Q ss_pred --hcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHH
Q 026868 139 --FWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILE 177 (231)
Q Consensus 139 --~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~e 177 (231)
...+..+...+++..+..+..-.+++.+..+..++|+.-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111222334677888999999999999999999875
No 25
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=93.97 E-value=0.91 Score=39.50 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhh-hcccCCCcccccccchhhHH
Q 026868 80 KLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTT-FWYPGGSKNGRASLLPWHVF 158 (231)
Q Consensus 80 ~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~-~~~p~~~~~~r~~~~~~H~~ 158 (231)
-..|-.++.+++++...=-..+++.-+..++..-+..|..+..+++++... |+.. |-.....+...+.+.-.|.+
T Consensus 24 Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~iv----Gl~avf~~hn~~~~~~~hfySlHSw 99 (214)
T cd08764 24 FNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVI----GLKAVFDSHNLAKPPIPNMYSLHSW 99 (214)
T ss_pred EeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhcccCCCCcccchHHH
Confidence 568999999999764433333444222223344466899999988877765 4332 22233222234567789999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhh-ccc-cccCCchhHHHHHHHHHHHHHHHHHHHHHhccC
Q 026868 159 LGVYIYALAVATAATGILEKVTFLQ-TNH-VISRYSTEALLVNSLGILIVVLGGFVILALITP 219 (231)
Q Consensus 159 ~G~~~~~l~~~t~~lGl~ek~~f~~-~~~-~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~ 219 (231)
+|+.++++-......|+..= +.. .++ .+..+-| ... +.|+++.+.+++....=..+
T Consensus 100 lGl~t~~L~~lQ~~~Gf~~f--l~P~~~~~~r~~~~p--~H~-~~Gl~~fvLaiaT~~lGl~e 157 (214)
T cd08764 100 LGLTAVILFSLQWVGGFVSF--LFPGLPETLRAAYLP--LHV-FFGLFIFVLAVATALLGITE 157 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhcccchHHHHHHhH--HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998651 121 111 1111112 222 56777777666665544443
No 26
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=92.94 E-value=0.061 Score=33.80 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=25.2
Q ss_pred CccccchhhHHHHHHHHHHHHhhhhhhhccc
Q 026868 112 NFYSLHSWLGLACVFLFGIQWAAGFTTFWYP 142 (231)
Q Consensus 112 hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p 142 (231)
.+..+|.|+|+++..++.+-.+.|.++.+.|
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567899999999999988888888876654
No 27
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=91.45 E-value=4.3 Score=33.12 Aligned_cols=93 Identities=20% Similarity=0.128 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHH
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVF 158 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~ 158 (231)
.-..|-.++.+++++...=-..+|+.-+ ..++.-+..|.++=.+++++.+. |+..-+.-+ .....+.+.-+|.+
T Consensus 7 ~Fn~HP~lM~~gfi~l~~eAiL~~r~~~-~~k~~~k~iH~~l~~la~~~~vv----Gl~avf~~~-~~~~~~~~~SlHSw 80 (144)
T cd08766 7 IFNVHPVLMVIGFIFLAGEAILAYKTVP-GSREVQKAVHLTLHLVALVLGIV----GIYAAFKFH-NEVGIPNLYSLHSW 80 (144)
T ss_pred eeeccHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHHHHHHHH----HHHHHHHHh-cccCccccccHHHH
Confidence 3457999999998765544444555322 22334466899887777666554 544332211 22224567789999
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 026868 159 LGVYIYALAVATAATGILE 177 (231)
Q Consensus 159 ~G~~~~~l~~~t~~lGl~e 177 (231)
+|+.++++-......|+..
T Consensus 81 lGl~t~~L~~lQ~~~G~~~ 99 (144)
T cd08766 81 LGIGTISLFGLQWLFGFVT 99 (144)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875
No 28
>PLN02680 carbon-monoxide oxygenase
Probab=91.28 E-value=7 Score=34.46 Aligned_cols=129 Identities=15% Similarity=0.004 Sum_probs=80.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHheeccC-CCcchhHHHHHHHHHHHHHHH----HHHHHHHHhhccc-CCCCCccccch
Q 026868 45 LIFNVHPVLMVIGLVLLNGEAMLAYKTVS-GTKKLRKLVHLSLQFIAFLLS----LIGVWAALKFHND-KGIDNFYSLHS 118 (231)
Q Consensus 45 ~~F~~HP~lM~~gfv~l~~~ail~~r~~~-~~k~~~~~iH~~Lq~la~~~~----~iG~~ai~~~k~~-~~~~hf~S~Hs 118 (231)
..-..|-.++.+++++...--+.+++.=. ..+..-..+|..+.+..+++. +.|+..-+..+.. +..+.+.-+|-
T Consensus 78 ~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~ 157 (232)
T PLN02680 78 LKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHV 157 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 34568999999999986433333444211 234456778999988887764 5677663333211 12244667999
Q ss_pred hhHHHHHHHHHHHHhhhhhhhcc---cCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 026868 119 WLGLACVFLFGIQWAAGFTTFWY---PGGSKNGRASLLPWHVFLGVYIYALAVATAAT 173 (231)
Q Consensus 119 ~lGl~~~il~~lQ~~~G~~~~~~---p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~l 173 (231)
+.|..+..+...+...|+.--.. .....+..+.=-..=.+.|+.+.+.|..-...
T Consensus 158 ~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN~~gl~~~~fg~~V~~~ 215 (232)
T PLN02680 158 FFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLVNSLGILIVVLGGFVILA 215 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999964221 11011111122235567788777777766655
No 29
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=90.91 E-value=3.1 Score=35.28 Aligned_cols=115 Identities=13% Similarity=0.043 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhcCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHheeccC-CCcchhHHHHHHHHHHHHHHH----HH
Q 026868 22 STLVLTWTVQYRGGLSLASDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVS-GTKKLRKLVHLSLQFIAFLLS----LI 96 (231)
Q Consensus 22 ~~lv~~W~~~~~gG~~w~~~~~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~-~~k~~~~~iH~~Lq~la~~~~----~i 96 (231)
+.+.+-=...||..-.|+. +++.....|..+..+++++-..--..+|+.=. ....+...+|..+.+..+.+. +.
T Consensus 47 i~L~geAiL~Yr~~~~~~~-~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~ 125 (179)
T cd08762 47 VVLYGNAALVYRIPLTWGG-PKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVM 125 (179)
T ss_pred HHHHHHHHHhhcccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444556775555542 24445689999999999885332233344211 244556778999988877764 56
Q ss_pred HHHHHHhhcc--cCCCCCccccchhhHHHHHHHHHHHHhhhhhh
Q 026868 97 GVWAALKFHN--DKGIDNFYSLHSWLGLACVFLFGIQWAAGFTT 138 (231)
Q Consensus 97 G~~ai~~~k~--~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~ 138 (231)
|+.. |..+. +...+.+.-+|-..|+.+.++...+...|+..
T Consensus 126 Gf~~-f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~e 168 (179)
T cd08762 126 GFTS-FLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINE 168 (179)
T ss_pred HHHH-HhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766 44221 22345667899999999999999999999964
No 30
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=89.84 E-value=8.7 Score=30.58 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHH
Q 026868 80 KLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFL 159 (231)
Q Consensus 80 ~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~ 159 (231)
+......-..|.++.+.|+.-.+.. .+.| ..++-+-..++|++.....-..+..++..+-...+.
T Consensus 4 ~~~r~~~~~~~~~~i~~gi~~l~~~---------~~~~------~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~ 68 (136)
T PF08507_consen 4 NIFRILNIIAGILLILAGILSLFNS---------FSFS------SFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYI 68 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---------hhHH------HHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHH
Confidence 3444555555666666665544432 1222 334444445667765555443333566777888999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccC
Q 026868 160 GVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPENGKSEVLRA 229 (231)
Q Consensus 160 G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~~~~~~~~~ 229 (231)
|+..+.+-+++..++.. + ..-..|+++.+.|++.+..-..+..+.|+.+|+
T Consensus 69 GRGlfyif~G~l~~~~~----~---------------~~~i~g~~~~~~G~~~i~l~~~~~~~~~~~~r~ 119 (136)
T PF08507_consen 69 GRGLFYIFLGTLCLGQS----I---------------LSIIIGLLLFLVGVIYIILGFFCPIKEPESMRE 119 (136)
T ss_pred HHHHHHHHHHHHHHhhH----H---------------HHHHHHHHHHHHHHHHHHHHHHcCCCCchhcCc
Confidence 99999887777777651 1 112467777777776655544444445554443
No 31
>PLN02351 cytochromes b561 family protein
Probab=89.13 E-value=16 Score=32.51 Aligned_cols=128 Identities=16% Similarity=0.014 Sum_probs=84.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHheeccC-C--CcchhHHHHHHHHHHHHHHH----HHHHHHHHhhcccC--CCCCccc
Q 026868 45 LIFNVHPVLMVIGLVLLNGEAMLAYKTVS-G--TKKLRKLVHLSLQFIAFLLS----LIGVWAALKFHNDK--GIDNFYS 115 (231)
Q Consensus 45 ~~F~~HP~lM~~gfv~l~~~ail~~r~~~-~--~k~~~~~iH~~Lq~la~~~~----~iG~~ai~~~k~~~--~~~hf~S 115 (231)
.....|-.+..+++++. .-|+.. .+. . .+.+...+|..+.+..+.+. +.|+.. |...... ....+.-
T Consensus 82 ~~K~lH~~Lh~~Ali~~-vvGl~a--~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~-F~~P~~~~~~Ra~~~P 157 (242)
T PLN02351 82 TKKSVHLWLQGLALASG-VFGIWT--KFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMS-FWHRGEMRTTRTTVLP 157 (242)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH--HHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCchhhHHHHhH
Confidence 47889999999999884 455544 222 1 23556778999988887764 567766 4444322 2345556
Q ss_pred cchhhHHHHHHHHHHHHhhhhhhhcc---cCCCcccccccchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 116 LHSWLGLACVFLFGIQWAAGFTTFWY---PGGSKNGRASLLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 116 ~Hs~lGl~~~il~~lQ~~~G~~~~~~---p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
+|-..|+.+..+.......|+.--.. .....+..+.=-..=.+.|+.+.+.|..-+..-..
T Consensus 158 ~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~Vv~~~~~ 221 (242)
T PLN02351 158 WHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIVILAAVL 221 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999974322 11111112222346678888888887766665443
No 32
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=88.83 E-value=0.55 Score=28.71 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=24.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 149 RASLLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 149 r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
|+..+.+|++.|....+..+.-+++|..
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999876
No 33
>PRK11513 cytochrome b561; Provisional
Probab=87.60 E-value=3.3 Score=34.57 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhH
Q 026868 78 LRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHV 157 (231)
Q Consensus 78 ~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~ 157 (231)
..+.+||..-++-......|.......+ ...+.++++|-.+|++++.+.+.-.+..+. .-.|..+.+.++.....=+
T Consensus 8 ~~~~lHWl~a~li~~~~~~~~~~~~~~~--~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~-~~~P~~~~~~~~~~~~~A~ 84 (176)
T PRK11513 8 LQIGIHWLVFLLVIVAYCAMEFRGFFPR--SDRPLINMIHVSCGISILVLMVVRLLLRLK-YPTPPIVPKPKPMMTGLAH 84 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCCCHHHHHHHH
Confidence 3577899654333333333322211111 123456789999999999999999999986 2233322221111111111
Q ss_pred HHHHHHHHHHHHHHHHhhHH
Q 026868 158 FLGVYIYALAVATAATGILE 177 (231)
Q Consensus 158 ~~G~~~~~l~~~t~~lGl~e 177 (231)
..-...|++-++..++|+..
T Consensus 85 ~~H~~LY~lli~~plsG~~~ 104 (176)
T PRK11513 85 LGHLVIYLLFIALPVIGLVM 104 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22256777777777888764
No 34
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=87.18 E-value=8.9 Score=31.08 Aligned_cols=99 Identities=17% Similarity=0.128 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc--cccchhhHHHHHHHHHHHHhhhhhhhcccC-------------
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNF--YSLHSWLGLACVFLFGIQWAAGFTTFWYPG------------- 143 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf--~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~------------- 143 (231)
.+..||..=+.-+.+...|+..-...+........ ..+|-++|++...+.+.-..... ....|.
T Consensus 6 ~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 84 (182)
T PF01292_consen 6 TRILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRW-RRLFPWSDDVFFQVKNYLY 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHH-HhhcccchhhHHHHHHHHH
Confidence 46689999988888888998875555443322222 68899999999888766655550 001111
Q ss_pred ----CCcccccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 144 ----GSKNGRASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 144 ----~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
.+........+.-+..-.+.+++..+..++|+...
T Consensus 85 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~ 123 (182)
T PF01292_consen 85 FLLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLW 123 (182)
T ss_pred HHhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111123444555566777777788888887753
No 35
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=86.88 E-value=10 Score=30.66 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=44.9
Q ss_pred CCCCccccchhhHHHHHHHHHHHHhhhhhh---hcccCC-----CcccccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 109 GIDNFYSLHSWLGLACVFLFGIQWAAGFTT---FWYPGG-----SKNGRASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 109 ~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~---~~~p~~-----~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
+.+.+.....+.-.+......++.+.|+.. ...+.. +...+.....+|.+.+.......++=+.+.+..+
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~Hi~~a~~~~ 175 (188)
T PF00033_consen 98 PSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIHIYAAIFHH 175 (188)
T ss_dssp ---SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHBT
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556777777788888889999999986 111111 1112346789999999998888777777766543
No 36
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=86.18 E-value=0.94 Score=28.34 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=25.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhHH
Q 026868 149 RASLLPWHVFLGVYIYALAVATAATGILE 177 (231)
Q Consensus 149 r~~~~~~H~~~G~~~~~l~~~t~~lGl~e 177 (231)
|+.+...|++.|+.+-++-.+.+.+|...
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45678999999999999999999999764
No 37
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=86.17 E-value=5.1 Score=33.98 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcc----cccccch
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKN----GRASLLP 154 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~----~r~~~~~ 154 (231)
...+||..-++-+...+.|.......+.+..+..++.+|-.+|+.+..+.++-.+..+. .-.|....+ .|..-+-
T Consensus 12 ~i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~-~~~p~~~~~~~~~~~~aA~~ 90 (181)
T COG3038 12 QIALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLR-NPAPPIVPGPPPWQRKAAKL 90 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCChHHHHHHHH
Confidence 46689999888888888888887777765556688999999999999999999888875 222322221 1223344
Q ss_pred hhHHHHHHHHHHHHHHHHHhhH
Q 026868 155 WHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 155 ~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
.|- ++|++-++-=++|+.
T Consensus 91 ~Hl----~LY~l~lalPlsG~l 108 (181)
T COG3038 91 GHL----ALYLLMLALPLSGYL 108 (181)
T ss_pred HHH----HHHHHHHHHHHHHHH
Confidence 453 445555555555543
No 38
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=85.91 E-value=14 Score=28.43 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=61.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccc
Q 026868 74 GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLL 153 (231)
Q Consensus 74 ~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~ 153 (231)
.+++..-..|..++.+++.. +.-++.+..+-+ .+||--.=.+..++..+-+..|.. +.+...+. .-.
T Consensus 12 ~~~~~~l~~Hi~lm~la~~i-l~Pi~lvL~~~~-------sr~~~~~q~~~~~l~~~g~~~g~~---~~~~~p~l--yp~ 78 (105)
T PF10348_consen 12 SPHRSALYAHIVLMTLAWVI-LYPIGLVLGNAR-------SRWHLPVQTVFLVLMILGLFLGSV---YNGSTPDL--YPN 78 (105)
T ss_pred CCchHHHHHHHHHHHHHHHH-HHHHHHHHHHcc-------chHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCC--CCC
Confidence 45667788999999998876 445555555443 246766655555555665666654 22221111 124
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 154 PWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 154 ~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
-.|..+|.+++++.++..++|+..|
T Consensus 79 n~H~k~g~il~~l~~~q~~~gv~~~ 103 (105)
T PF10348_consen 79 NAHGKMGWILFVLMIVQVILGVILK 103 (105)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999866
No 39
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=84.14 E-value=2.4 Score=34.17 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhh---HHHHHHHHHHHHhhhhhhhc---ccCCCccccc---c
Q 026868 81 LVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWL---GLACVFLFGIQWAAGFTTFW---YPGGSKNGRA---S 151 (231)
Q Consensus 81 ~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~l---Gl~~~il~~lQ~~~G~~~~~---~p~~~~~~r~---~ 151 (231)
.+.+.++.++.++..+|..++-+.+. ..|... +.+...++++.++..-...- +++ +...|. .
T Consensus 6 ~l~a~~~~~s~~ll~~g~~~Ir~~~~--------~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g-~~~ir~~Y~~ 76 (133)
T PF04238_consen 6 DLNAVLNAISAVLLLIGWYFIRRGRI--------KLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGG-PGWIRPVYLF 76 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-CccHHHHHHH
Confidence 45677788888888888887753332 234433 22222333333333222100 111 223443 3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 152 LLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 152 ~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
+.-.|..+-.++..+...|...|+.++
T Consensus 77 iL~~Hi~LA~~~~pL~l~tl~~a~~~~ 103 (133)
T PF04238_consen 77 ILISHIILAIVALPLVLYTLYRALRGR 103 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 457899999999999999999998875
No 40
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=83.99 E-value=8.2 Score=31.86 Aligned_cols=93 Identities=13% Similarity=0.043 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhH
Q 026868 80 KLVHLSLQFIAFLLSLIGVWAALKFHN--DKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHV 157 (231)
Q Consensus 80 ~~iH~~Lq~la~~~~~iG~~ai~~~k~--~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~ 157 (231)
-..|=.++.+++++.-.=...+|+.-. ...++.-+..|.++=.+++++.+ .|+..-+.-+ .+...+.+.-+|.
T Consensus 12 Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i----~Gl~avf~~h-n~~~~~~fySlHS 86 (153)
T cd08765 12 FNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAI----ISVVAVFVFH-NAKNIPNMYSLHS 86 (153)
T ss_pred eechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHH----HHHHHHHHHc-cccCCCccccHHH
Confidence 458999999998883333334443211 11244457788887666655544 4555322211 2223467888999
Q ss_pred HHHHHHHHHHHHHHHHhhHH
Q 026868 158 FLGVYIYALAVATAATGILE 177 (231)
Q Consensus 158 ~~G~~~~~l~~~t~~lGl~e 177 (231)
++|+.++++-......|+..
T Consensus 87 wlGl~t~~l~~lQ~~~Gf~~ 106 (153)
T cd08765 87 WVGLAAVILYPLQLVLGISV 106 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 41
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=80.96 E-value=28 Score=28.12 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=43.2
Q ss_pred ccchhhHHHHHHHHHHHHhhhhhhhcc-cC------CCcccccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 115 SLHSWLGLACVFLFGIQWAAGFTTFWY-PG------GSKNGRASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 115 S~Hs~lGl~~~il~~lQ~~~G~~~~~~-p~------~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
..-.....+..++..++.+.|+..+.. +. .+.........+|.+.+........+=+.+.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~~a~~~~ 169 (182)
T PF01292_consen 99 PGQKIVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVYAALFHH 169 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344666778888889999987652 11 12333456789999999999887777777666554
No 42
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=78.38 E-value=8.8 Score=28.14 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 152 LLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 152 ~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
...+|+..|........+-+.+|..
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999888888875
No 43
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=77.54 E-value=38 Score=28.25 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccC-C------CCCccccchhhHHHHHHHHHHHHhhhhhhhcccCC-------
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALKFHNDK-G------IDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG------- 144 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~-~------~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~------- 144 (231)
.+..||+.-..-+++.+.|+.......... + ......+|-++|.+..++.+.=.+.++.. -.|..
T Consensus 7 ~R~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~rl~~~~~~-~~~~~~r~~~~~ 85 (211)
T TIGR02125 7 VRLFHWVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLLFRVYLAFVG-KDSRYERFSFRD 85 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcchhhHHhhcC
Confidence 355788766666666667765532211100 0 11245678888887777776655555432 00100
Q ss_pred Ccc---c----------------ccccchhhHHHHHHHHHHHHHHHHHhhHH
Q 026868 145 SKN---G----------------RASLLPWHVFLGVYIYALAVATAATGILE 177 (231)
Q Consensus 145 ~~~---~----------------r~~~~~~H~~~G~~~~~l~~~t~~lGl~e 177 (231)
+.+ + .....+.-+..-..++++..+..++|+.-
T Consensus 86 ~~~~~~~~~~~~~y~~~~~~~~~~~~~n~~~k~~~~~l~~~~~~~~lTG~~~ 137 (211)
T TIGR02125 86 PLNPKAWIKQLRWYLFLGKHPHKKGGYNPLQFVAYFGFIVLILFMILTGLAL 137 (211)
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 01224566677777888888888999764
No 44
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=76.48 E-value=38 Score=27.21 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccc-------------cchhhHHHHHHHHHHHHhhhhhhhcccCC
Q 026868 78 LRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYS-------------LHSWLGLACVFLFGIQWAAGFTTFWYPGG 144 (231)
Q Consensus 78 ~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S-------------~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~ 144 (231)
.+...|.-.|..|+.+..+=++.=...+...+..+|.. .|..+-.++..+.......|+-
T Consensus 29 ~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~------- 101 (133)
T PF04238_consen 29 GRIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALR------- 101 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 35678999999888886655544333443344444433 2555555555555555554442
Q ss_pred CcccccccchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 145 SKNGRASLLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 145 ~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
.-..-||-.|..++..=..+..+|..
T Consensus 102 ------~~~~~Hrki~r~t~piWlyvsvTGvv 127 (133)
T PF04238_consen 102 ------GRFTRHRKIGRWTFPIWLYVSVTGVV 127 (133)
T ss_pred ------cChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13457999999999988888888864
No 45
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=75.91 E-value=12 Score=27.31 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--hc------ccC--CCCCccccchhhHHHHHHHHHHHHhhhhh
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALK--FH------NDK--GIDNFYSLHSWLGLACVFLFGIQWAAGFT 137 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~--~k------~~~--~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~ 137 (231)
.+.+=...-++.+++.+.|++.-.. .| ... +....+.+|..+|+.+....++-.+.|..
T Consensus 16 G~~iv~~~al~~l~~~isGl~l~~p~~~~~~~~~r~~~~~~~r~~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 16 GRWIVGILALLLLLLLISGLYLWWPRRWRWFFSLRPKRSKSKRRWFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCcccccccCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666777788876542 11 111 12226779999999999999999999986
No 46
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=73.88 E-value=3.9 Score=23.94 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=17.6
Q ss_pred ccccchhhHHHHHHHHHHHHhhhhh
Q 026868 113 FYSLHSWLGLACVFLFGIQWAAGFT 137 (231)
Q Consensus 113 f~S~Hs~lGl~~~il~~lQ~~~G~~ 137 (231)
|+.+|.|++.++..++.+-.+.|+.
T Consensus 1 ~~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778777777777777777764
No 47
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=73.50 E-value=19 Score=27.06 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhhhhhh-hcccCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 026868 120 LGLACVFLFGIQWAAGFTT-FWYPGGSKNGRASLLPWHVFLGVYIYALAVATAAT 173 (231)
Q Consensus 120 lGl~~~il~~lQ~~~G~~~-~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~l 173 (231)
.|.+.++++.++.+.|.=. .+.+....+ .++...+||+.|+.+++++++=...
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~-~~~~~~~Hr~lg~~~~~~~~~H~~~ 54 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGIS-FDRLLRFHRWLGRLAFFLALLHGVL 54 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777788888888766100 000111111 2244559999999999988876544
No 48
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=68.20 E-value=17 Score=27.50 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=24.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhHH
Q 026868 149 RASLLPWHVFLGVYIYALAVATAATGILE 177 (231)
Q Consensus 149 r~~~~~~H~~~G~~~~~l~~~t~~lGl~e 177 (231)
|++....||..|++-..+...++..|+.-
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i 30 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFI 30 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHH
Confidence 55667899999999999888888888763
No 49
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=67.49 E-value=10 Score=32.24 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHH
Q 026868 124 CVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILE 177 (231)
Q Consensus 124 ~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~e 177 (231)
+.+++..|+..|...-..|+.+. .+.....+|+.+|+.++.+.+.=++..+.+
T Consensus 19 ~allv~~~~~~g~~~~~~~~~~~-~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~ 71 (181)
T COG3038 19 MALLVIGAFALGELMGFLPRGPG-LYFLLYELHKSIGILVLALMVLRLLWRLRN 71 (181)
T ss_pred HHHHHHHHHHHHHHHHHcccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56777888888988777777432 456788999999999999999888876653
No 50
>PLN02810 carbon-monoxide oxygenase
Probab=62.18 E-value=1.1e+02 Score=26.96 Aligned_cols=127 Identities=17% Similarity=0.093 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhc-ccCCCcccccccchhhH
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFW-YPGGSKNGRASLLPWHV 157 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~-~p~~~~~~r~~~~~~H~ 157 (231)
.-.+|=.+..+++++.-.=-..+|+.-.. .++.-+..|..+=.+++++-.+ |+...+ ++. ++..+-+.-+|-
T Consensus 46 ~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~-~k~~~K~iH~~lh~~Al~l~vv----Gl~Avf~~Hn--~~~i~nlySLHS 118 (231)
T PLN02810 46 IFNLHPVLMLIGLIIIGGEAIMSYKSLPL-KKEVKKLIHLVLHAIALILGIF----GICAAFKNHN--ESGIANLYSLHS 118 (231)
T ss_pred eeeehHHHHHHHHHHHhhHHHHHhhcccc-ccchHHHHHHHHHHHHHHHHHH----HHHHHHHhcc--ccCCCceeeHHH
Confidence 45689999999988755544555543221 2344477898887666655443 444322 332 222367888999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhccccccCCchh---HHHHHHHHHHHHHHHHHHHHHhcc
Q 026868 158 FLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTE---ALLVNSLGILIVVLGGFVILALIT 218 (231)
Q Consensus 158 ~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e---~~~~n~~gl~~~~~~~~v~~~~~~ 218 (231)
|.|+.++.+-...-..|+.. |... +...++ ++ ...+ +.|+.+.+.++.....=..
T Consensus 119 WlGl~tv~Lf~lQw~~Gf~~---Fl~P-~~~~~~-R~~~lP~Hv-~~Gl~if~LAiata~lGi~ 176 (231)
T PLN02810 119 WLGIGIISLYGIQWIYGFIV---FFFP-GGSTNL-RSGSLPWHV-LFGLFVYILAVGNAALGFL 176 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcC-CCchhH-HHHHhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999964 3221 110111 11 1222 5677766666665544433
No 51
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=57.64 E-value=8.5 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=22.1
Q ss_pred ccccchhhHHHHHHHHHHHHhhhhh
Q 026868 113 FYSLHSWLGLACVFLFGIQWAAGFT 137 (231)
Q Consensus 113 f~S~Hs~lGl~~~il~~lQ~~~G~~ 137 (231)
+..+|-|+|+.+.+..++..+.|..
T Consensus 5 ~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 5 WRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999986
No 52
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=55.34 E-value=1.3e+02 Score=25.36 Aligned_cols=105 Identities=19% Similarity=0.148 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHH
Q 026868 83 HLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVY 162 (231)
Q Consensus 83 H~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~ 162 (231)
|.+.+....+....|-..... +......|-.+|...++++.+-.+.|....+... .+.+.--|-+.|..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~l~------~~~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~-----~~lf~spH~~~Gl~ 123 (175)
T PF13301_consen 55 YSIARAIFLILALTGTRKELV------KLKARDRHYRLGFALLAFMGLGALGGQLGTYRQN-----GKLFWSPHLWAGLA 123 (175)
T ss_pred chhhHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcC-----CCCccCchHHHHHH
Confidence 444455555666666555444 2234577999999999999999999987654432 12455569999999
Q ss_pred HHHHHHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHH
Q 026868 163 IYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGIL 204 (231)
Q Consensus 163 ~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~ 204 (231)
+..+-..+..+.-. ++..+++ +.-+-.+..|.+.++
T Consensus 124 ~~~L~~~s~al~~~---i~~g~~~---~~R~lHi~lN~~~l~ 159 (175)
T PF13301_consen 124 VVGLMAFSAALVPQ---IQKGNRP---WARRLHIYLNSLALL 159 (175)
T ss_pred HHHHHHHHHHHHHH---HccCCch---hHHHHHHHHHHHHHH
Confidence 98888777766322 1221110 112345667777666
No 53
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=53.33 E-value=14 Score=27.78 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhcc---CCCCCCCcccCC
Q 026868 201 LGILIVVLGGFVILALIT---PENGKSEVLRAS 230 (231)
Q Consensus 201 ~gl~~~~~~~~v~~~~~~---~~~~~~~~~~~~ 230 (231)
+.+++.+|-++|++.++. .+..|||-|||+
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrPIYrPv 69 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRPIYRPV 69 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence 566666666666655553 233889999996
No 54
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=52.55 E-value=58 Score=25.79 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=38.9
Q ss_pred ccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 115 SLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 115 S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
=.|=.+|..|.++.....+.++. +|.. .-+|.|.+++..+.+..+.++++=.+
T Consensus 29 iinliiG~vT~l~VLvtii~afv---f~~~------~p~p~~iffavcI~l~~~s~~lLI~W 81 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFV---FPQD------PPKPLHIFFAVCILLICISAILLIFW 81 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEE---ecCC------CCCceEEehHHHHHHHHHHHHhheee
Confidence 35678888888888888777775 5542 34578999998888888777777433
No 55
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=51.32 E-value=1.5e+02 Score=25.13 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=44.8
Q ss_pred CCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCC----CcccccccchhhHHHHHHHHHHHHHHHHHhhHH
Q 026868 109 GIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG----SKNGRASLLPWHVFLGVYIYALAVATAATGILE 177 (231)
Q Consensus 109 ~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~----~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~e 177 (231)
+...++......-....+...++.+.|+..+ .|.. +.........+|.+...++.+..++=+.+.+.+
T Consensus 103 ~~~kyN~~qk~~y~~~~~~~~~~~iTGl~l~-~p~~~~~~~~~~~~~~~~~H~~~a~~~i~~iivHiy~a~~~ 174 (211)
T PRK10639 103 DTGRYNFGQKCVFWAAIIFLVLLLVSGVIIW-RPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIYAALWV 174 (211)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444566666666667777788999999854 3321 222234567899999888888777766665543
No 56
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=49.64 E-value=2.2e+02 Score=26.72 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCC--CccccchhhHHHHHHHHHHHHhhhhhhhcccCC
Q 026868 86 LQFIAFLLSLIGVWAALKFHNDKGID--NFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG 144 (231)
Q Consensus 86 Lq~la~~~~~iG~~ai~~~k~~~~~~--hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~ 144 (231)
.|..|..+..+|...+=.....+..+ ....--.++|+..++..+ +..|+...++.+.
T Consensus 147 ~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c--~~SgfAgvYfEki 205 (345)
T KOG2234|consen 147 LQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVAC--FLSGFAGVYFEKI 205 (345)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHH--HHHHHHHHHHHHH
Confidence 56788888888988765222222112 233445788887776554 4666666555543
No 57
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=49.45 E-value=43 Score=22.89 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCC----cccccccchhhHHHHHHHHHHHHH
Q 026868 121 GLACVFLFGIQWAAGFTTFWYPGGS----KNGRASLLPWHVFLGVYIYALAVA 169 (231)
Q Consensus 121 Gl~~~il~~lQ~~~G~~~~~~p~~~----~~~r~~~~~~H~~~G~~~~~l~~~ 169 (231)
=+..++.+....+.|++.+..|... ...|...+..|.+.|...+++...
T Consensus 6 ~~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 6 NLLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888898877665432 122456789999999988887654
No 58
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=49.29 E-value=2.1e+02 Score=26.25 Aligned_cols=102 Identities=11% Similarity=0.037 Sum_probs=51.1
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccc--
Q 026868 72 VSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGR-- 149 (231)
Q Consensus 72 ~~~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r-- 149 (231)
++.+++..+..+--+.-+..++...-+...+.++.+. . ..-..+|-++++...+-...=....+.|+.+....
T Consensus 115 F~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~--~---~~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~~~ 189 (340)
T PF12794_consen 115 FGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPD--G---LARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQPKP 189 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch--h---hhhhhHHHHHHHHHHHHHHHHHHHHHccccccccCCC
Confidence 5567777788887787777777766666666655432 2 22455665444433321111111112333221111
Q ss_pred -cccchhhHH---HHHHHHHHHHHHHHHhhHHH
Q 026868 150 -ASLLPWHVF---LGVYIYALAVATAATGILEK 178 (231)
Q Consensus 150 -~~~~~~H~~---~G~~~~~l~~~t~~lGl~ek 178 (231)
+.....+.. .-..+-+..++-+.+|++-.
T Consensus 190 ~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yT 222 (340)
T PF12794_consen 190 DSWIHRLRYLWWPLLILAPLALIVLALLGYYYT 222 (340)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 122333333 33444446667777887743
No 59
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=49.24 E-value=29 Score=21.60 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Q 026868 195 ALLVNSLGILIVVLGGFVILALITPEN 221 (231)
Q Consensus 195 ~~~~n~~gl~~~~~~~~v~~~~~~~~~ 221 (231)
..++|++|++ .+..+|+|-.+..+.
T Consensus 8 ~~lan~lG~~--~~~LIVlYH~v~~n~ 32 (35)
T PF10215_consen 8 YTLANFLGVA--AMVLIVLYHFVEVNA 32 (35)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHCCH-
T ss_pred HHHHHHHHHH--HHHHHHHHHHhhccc
Confidence 4689999998 677777777765544
No 60
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.95 E-value=1.3e+02 Score=33.01 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHH--HHh--hcccCCCCC---ccccchhhHHHHHHHH-HHHHhhhhhhhcccC
Q 026868 83 HLSLQFIAFLLSLIGVWA--ALK--FHNDKGIDN---FYSLHSWLGLACVFLF-GIQWAAGFTTFWYPG 143 (231)
Q Consensus 83 H~~Lq~la~~~~~iG~~a--i~~--~k~~~~~~h---f~S~Hs~lGl~~~il~-~lQ~~~G~~~~~~p~ 143 (231)
|...++.++++.++++.. .+. +-++.+..+ -...|.|.|.+-..+- ++-.++|+.+|++|-
T Consensus 20 rrL~E~~gIlLlllAlfL~lALiSYsPsDPSwS~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~ 88 (1355)
T PRK10263 20 RRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPV 88 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccCCcccccCcccccccccchHHHHHHHHHHHHHhHHHHHHHH
Confidence 455566666666666543 222 222221111 1225777777655332 344477887776663
No 61
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=47.52 E-value=1.7e+02 Score=24.60 Aligned_cols=28 Identities=11% Similarity=-0.128 Sum_probs=23.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhHH
Q 026868 150 ASLLPWHVFLGVYIYALAVATAATGILE 177 (231)
Q Consensus 150 ~~~~~~H~~~G~~~~~l~~~t~~lGl~e 177 (231)
.++.+..+..-..++++..+.+++|+.-
T Consensus 102 ~kyN~~Qk~~y~~i~~~~~~~~~TGl~m 129 (204)
T TIGR01583 102 GKYNAGQKSWYWILVLGGFLMIITGIFM 129 (204)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888998888888888999999874
No 62
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=45.67 E-value=1.5e+02 Score=28.40 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHH--HHHhhhccccccCCchhH
Q 026868 118 SWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILE--KVTFLQTNHVISRYSTEA 195 (231)
Q Consensus 118 s~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~e--k~~f~~~~~~~~~~~~e~ 195 (231)
+-.|+..-+++.+-.+.-+..|+.-...++.+..-...--..-.+++.+++++++.|+.. +..+...++- +..+..-
T Consensus 238 a~~Glf~Gil~lv~tii~lilf~v~~~~~~~~~~A~~~~~i~~~~l~~l~~~a~i~g~~~~r~l~~~~~~~~-~~LD~iL 316 (441)
T PF03189_consen 238 ASKGLFLGILVLVATIIVLILFFVLINDPEYSELAILLVYIFELVLYSLSILAVIIGIYRMRKLKFSSKNPG-RSLDVIL 316 (441)
T ss_pred cchhHHHHHHHHHHHHHHhehhhheecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcc-ccHhHHH
Confidence 444666555554444433333332222222222222233466678899999999999875 2233111111 2333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 026868 196 LLVNSLGILIVVLGGFVILALI 217 (231)
Q Consensus 196 ~~~n~~gl~~~~~~~~v~~~~~ 217 (231)
+++-..|.. +++...+.+.+
T Consensus 317 L~va~~G~~--ly~~fsIia~~ 336 (441)
T PF03189_consen 317 LVVAAFGEF--LYSYFSIIAGI 336 (441)
T ss_pred HHHHHHHHH--HHHHHHHHHHH
Confidence 445556665 44444333333
No 63
>MTH00026 COX1 cytochrome c oxidase subunit I; Provisional
Probab=44.33 E-value=3.3e+02 Score=26.97 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=90.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCc---ccccCCCCCcccchhHHHHHHHHHHHHHHH----HH-heecc----C
Q 026868 6 VRFPIFLVIRVIGVIISTLVLTWTVQYRGG---LSLASDNKDLIFNVHPVLMVIGLVLLNGEA----ML-AYKTV----S 73 (231)
Q Consensus 6 ~~~~~~~~~~~lgi~~~~lv~~W~~~~~gG---~~w~~~~~~~~F~~HP~lM~~gfv~l~~~a----il-~~r~~----~ 73 (231)
.|..+...+++.++-+.+-+.-|.....++ +.|+. |.+.++++++....| ++ .-+.. .
T Consensus 302 ~~~~f~~~T~~IavPtgikvF~wl~Tl~g~~~~l~~~~----------p~~~~l~fi~~F~~GG~tGv~la~~~~d~~lH 371 (534)
T MTH00026 302 TRAYFTAATMIIAVPTGIKIFSWLATVSGSGRNLIFTT----------PMAWALGFIFLFTIGGLTGIVLSNSSLDILLH 371 (534)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCcCCCCCc----------hHHHHHHHHHHHHHhccchhhhcchhhHHHhc
Confidence 455666778888888888888999876654 33431 456666775555443 22 22221 1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhh--cccCCCCCccccchhhHHHH-HHHHHHHHhhhhhhhcccCCCccccc
Q 026868 74 GTKKLRKLVHLSLQFIAFLLSLIGVWAALKF--HNDKGIDNFYSLHSWLGLAC-VFLFGIQWAAGFTTFWYPGGSKNGRA 150 (231)
Q Consensus 74 ~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~--k~~~~~~hf~S~Hs~lGl~~-~il~~lQ~~~G~~~~~~p~~~~~~r~ 150 (231)
++.-.--..|..+..-+......|++--+-. ++ .-.+.+..+|-|+=.+- .+.+.-|...|+. -.|++-.+...
T Consensus 372 dT~~VVaHFH~vl~~g~vf~~~a~~yy~~P~~tGr-~~~~~l~~~hfwl~~iG~~l~f~p~h~~G~~--GmPRR~~~Yp~ 448 (534)
T MTH00026 372 DTYYVVAHFHFVLSMGAVFAIFGGFYLWFGKITGY-AYKDIYGLIHFWLMFIGVNITFFPQHFLGLA--GLPRRYADYPD 448 (534)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CcCcccccccc
Confidence 2332334467777766666666666643321 11 11244566787776443 4566778888874 45665444444
Q ss_pred ccchhhHHHHHHHHHHHHHH--HHHhhHHH
Q 026868 151 SLLPWHVFLGVYIYALAVAT--AATGILEK 178 (231)
Q Consensus 151 ~~~~~H~~~G~~~~~l~~~t--~~lGl~ek 178 (231)
.+..+|...-...++.++.. -..-+.|.
T Consensus 449 ~~~~~N~vsSiGs~i~~i~~llFl~~l~eS 478 (534)
T MTH00026 449 NFEDFNQISSFGSIISIIAVIWFIVVIFDA 478 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667776655555544433 33334443
No 64
>PRK11513 cytochrome b561; Provisional
Probab=43.64 E-value=96 Score=25.73 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccC-----CC-----------CCccccchhhHHHHHHHHHHHHhhhhhhhcc
Q 026868 78 LRKLVHLSLQFIAFLLSLIGVWAALKFHNDK-----GI-----------DNFYSLHSWLGLACVFLFGIQWAAGFTTFWY 141 (231)
Q Consensus 78 ~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~-----~~-----------~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~ 141 (231)
..+..|+.+=.+-++.-+.|......+.+.- +. +.+.++|.+++-+..++.++-....+...+.
T Consensus 82 ~A~~~H~~LY~lli~~plsG~~~~~~~G~~~~~fg~~lp~~~~~~~~~~~~~~~~H~~~a~~l~~li~lHvaaAL~H~~i 161 (176)
T PRK11513 82 LAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYF 161 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCceeccccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466899999988888899998765422100 01 1245688888887778888777766665544
Q ss_pred cC
Q 026868 142 PG 143 (231)
Q Consensus 142 p~ 143 (231)
.+
T Consensus 162 ~k 163 (176)
T PRK11513 162 WK 163 (176)
T ss_pred cc
Confidence 33
No 65
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=42.89 E-value=2.4e+02 Score=25.07 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHH
Q 026868 88 FIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQ 131 (231)
Q Consensus 88 ~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ 131 (231)
.+...-+..|-..+..+- ..+-..+.|-..+++.+.+....
T Consensus 108 ~l~~~Q~~lG~~~V~~~l---~~~~~~~~Hl~~a~~~~~~l~~~ 148 (302)
T PF02628_consen 108 VLVILQGLLGAWTVLSGL---VSPYVVTLHLLLALLIFALLVWL 148 (302)
T ss_pred HHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHHHHHH
Confidence 333334555555554331 12334666777666655555443
No 66
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=41.51 E-value=1.5e+02 Score=22.11 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHH
Q 026868 87 QFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGI 130 (231)
Q Consensus 87 q~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~l 130 (231)
-+.+++.++.|+.....-+++.+..+--..|.++|+.+..++..
T Consensus 13 ~l~~~~A~~~G~~d~~~~~~~~~~~~~~~~H~~~~~~~~~l~~~ 56 (104)
T PF09990_consen 13 LLGAIVAVLTGFVDLLTVERGPPAHRVAWLHAILGLVALGLFLL 56 (104)
T ss_pred HHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666665555533344445566788888888877776
No 67
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=41.42 E-value=2.3e+02 Score=24.28 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=30.1
Q ss_pred CCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHH
Q 026868 111 DNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATA 171 (231)
Q Consensus 111 ~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~ 171 (231)
+-..+.--..|..++.++.++...+-+.-..+ ..++.++||..|...+..+.+=.
T Consensus 38 ~p~~~~~~~tG~~Al~llll~l~l~pL~~l~~------~~~l~~~RR~LGl~af~~a~lH~ 92 (205)
T PRK05419 38 DPVKDIEHFTGLWALVFLLATLAVTPLRRLTG------QPLLIRTRRLLGLWAFFYATLHL 92 (205)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666666666554321111 12456677777777666655544
No 68
>PHA03049 IMV membrane protein; Provisional
Probab=37.93 E-value=40 Score=24.04 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhccCC------CCCCCcccCCC
Q 026868 204 LIVVLGGFVILALITPE------NGKSEVLRASE 231 (231)
Q Consensus 204 ~~~~~~~~v~~~~~~~~------~~~~~~~~~~~ 231 (231)
+|++.-++.+|++.+.. +++||.|.+.|
T Consensus 10 ICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~e 43 (68)
T PHA03049 10 ICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKME 43 (68)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCChhhccCch
Confidence 34444455578887642 24567786554
No 69
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.58 E-value=1.6e+02 Score=21.54 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=35.2
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHhccC
Q 026868 148 GRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITP 219 (231)
Q Consensus 148 ~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~ 219 (231)
|+.+++-..-+.+++..++..+....|+.. |. ...+...-+....+..+++++++++++..
T Consensus 4 wKvR~kN~~~w~ali~~i~l~vq~~~~~fg---~~--------~~~~~~~~~i~~~v~~vl~iL~~~Gii~D 64 (84)
T PF04531_consen 4 WKVRFKNKAFWVALISAILLLVQQVGGLFG---WG--------ADFDVLLDQISNIVNAVLTILVILGIIND 64 (84)
T ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhc---cc--------ccHHHHHHHHHHHHHHHHHHHHHheeeeC
Confidence 334455555566666666666666666321 11 12233444455666667888888888763
No 70
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=34.96 E-value=1.7e+02 Score=21.03 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCC----CCCCcccC
Q 026868 159 LGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPEN----GKSEVLRA 229 (231)
Q Consensus 159 ~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~----~~~~~~~~ 229 (231)
.=..+.+.++++...|+..... ...+.+...|+++..+++-|+| ++|.+..|
T Consensus 13 ~~~il~~~~iisfi~Gy~~q~~-------------------~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~~ 68 (76)
T PF06645_consen 13 MQYILIISAIISFIVGYITQSF-------------------SYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKWLP 68 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhheeCCcHhhcCCcccCCC
Confidence 3345566677777888765311 1335555777888888888986 55555554
No 71
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=34.11 E-value=1.7e+02 Score=20.61 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=36.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 026868 149 RASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPENGK 223 (231)
Q Consensus 149 r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~~~ 223 (231)
|+.++-.=...+.++-+.|+..++-|+. |...+.. . -|++.+..|++..-...+|.+++
T Consensus 3 r~~~RivlAtiavFiaLagl~~~I~GlL----fD~~~~~--~----------yg~~al~~Gv~~fV~~Lnp~~~~ 61 (62)
T PF11177_consen 3 RSEYRIVLATIAVFIALAGLAAVIHGLL----FDEERVF--R----------YGVIALVVGVAGFVVMLNPAPTD 61 (62)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhh----ccccchh--H----------HHHHHHHHHHHHHHHhCCCCCCC
Confidence 3344445556777777888888888876 3322111 2 35666677777666777776643
No 72
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=32.48 E-value=2.7e+02 Score=22.44 Aligned_cols=126 Identities=20% Similarity=0.260 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHH---HHhhcccC--CC-CCccc----cchhhHHHHHHHHHHHHhhhhhh-hcccCCCcccccccc
Q 026868 85 SLQFIAFLLSLIGVWA---ALKFHNDK--GI-DNFYS----LHSWLGLACVFLFGIQWAAGFTT-FWYPGGSKNGRASLL 153 (231)
Q Consensus 85 ~Lq~la~~~~~iG~~a---i~~~k~~~--~~-~hf~S----~Hs~lGl~~~il~~lQ~~~G~~~-~~~p~~~~~~r~~~~ 153 (231)
.+|++++++-.+|+.. .+.+|.+. +. +.-.. -+-+.=.++.-...+-++.|... +..++.. .....
T Consensus 10 alHIiavi~W~aGl~yLprl~v~~~~~~~~~~~~~~~l~~m~rrl~~~I~~PAmilt~~~G~~ll~~~~~~~---~~~~~ 86 (147)
T PF03653_consen 10 ALHIIAVISWMAGLFYLPRLFVYHAEASDGSEEFYERLAIMERRLYRIIMTPAMILTWISGLLLLFLNPGLG---WFSSP 86 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh---hhcCc
Confidence 4677788888888773 24333322 22 22222 23344455666677788899443 3334210 01233
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHhccC
Q 026868 154 PWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITP 219 (231)
Q Consensus 154 ~~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~ 219 (231)
..|.-...++.+.+.=- ..|-.-|. +.++ +. ++-++.-...|-.-.+ +..+.|...+++|
T Consensus 87 Wl~vKL~~V~~L~~~H~-~~~~~~k~-~~~~-~~-~~s~~~~r~~nei~~l--l~i~Iv~lvv~KP 146 (147)
T PF03653_consen 87 WLHVKLVLVLLLVAYHG-WCGRYLKR-LARG-EN-KKSAKFFRIFNEIPTL--LLIAIVILVVVKP 146 (147)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHH-HhCC-CC-CCChHHHHHHhHHHHH--HHHHHHHHheeCC
Confidence 57777766665555433 23333221 2221 11 2233456777765555 4445666666666
No 73
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=32.43 E-value=3.7e+02 Score=26.17 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCC
Q 026868 121 GLACVFLFGIQWAAGFTTFWYPGG 144 (231)
Q Consensus 121 Gl~~~il~~lQ~~~G~~~~~~p~~ 144 (231)
|.+.+..+......|+..|..|..
T Consensus 94 ~~~~if~w~~~~~~g~~~ylvp~~ 117 (493)
T cd01661 94 TNAVIFGFGGNALIATSFYVVQRT 117 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777776777764
No 74
>CHL00070 petB cytochrome b6
Probab=30.62 E-value=81 Score=27.42 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=41.0
Q ss_pred ccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 113 FYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 113 f~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
+.+.|.|-.=..+++..+...-|+.. +.-++. +..-...|..++++.++++.+|+.-.
T Consensus 82 ~R~~H~~gas~~~~~~~lH~~r~~~~----gsYk~p----re~~W~~Gv~l~~l~m~~af~GY~Lp 139 (215)
T CHL00070 82 IRSVHRWSASMMVLMMILHVFRVYLT----GGFKKP----RELTWVTGVVLAVLTVSFGVTGYSLP 139 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hhhcCC----cccCcHHHHHHHHHHHHHHHccccCC
Confidence 46788888888888888888888751 211111 23447889999999999999998654
No 75
>PRK03735 cytochrome b6; Provisional
Probab=30.29 E-value=3.3e+02 Score=23.73 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=41.7
Q ss_pred cccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHHHHhhhccccccCCch
Q 026868 114 YSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYST 193 (231)
Q Consensus 114 ~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~ 193 (231)
.+.|.|-.=..+++..++..-|+..=-+ ++. +..-...|..++++.++++.+|+.-. |.| ..|-.
T Consensus 91 R~~H~~gas~~~~~~~lH~~r~~~~gsY----k~p----re~~W~~Gv~l~~l~~~~af~GY~Lp--w~q-----~s~wa 155 (223)
T PRK03735 91 RGMHHWGASLVIVMMFLHTLRVFFTGGY----KKP----RELNWVVGVLIFFVTVGLGFTGYLLP--WDQ-----KAYFA 155 (223)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH----cCC----CCceeHHHHHHHHHHHHHHhccccCC--ccc-----chhhH
Confidence 5566666666666666666666641111 111 12336677777777777777777654 544 23334
Q ss_pred hHHHHHHHH
Q 026868 194 EALLVNSLG 202 (231)
Q Consensus 194 e~~~~n~~g 202 (231)
..+..|.+.
T Consensus 156 ~~V~t~l~~ 164 (223)
T PRK03735 156 TKVGSQIAE 164 (223)
T ss_pred HHHHhhhhc
Confidence 455555554
No 76
>PLN02631 ferric-chelate reductase
Probab=29.82 E-value=1.6e+02 Score=30.13 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=19.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHH
Q 026868 150 ASLLPWHVFLGVYIYALAVATAAT 173 (231)
Q Consensus 150 ~~~~~~H~~~G~~~~~l~~~t~~l 173 (231)
.+...+||+.|+.+++++++=.+.
T Consensus 186 e~~i~yHRWlGri~~~la~iH~i~ 209 (699)
T PLN02631 186 ESSIKYHIWLGHVSNFLFLVHTVV 209 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467799999999999988776554
No 77
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=29.69 E-value=3.1e+02 Score=22.40 Aligned_cols=140 Identities=13% Similarity=0.032 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHhhcCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHheeccC--CCcchhHHHHHHHHHHHHHHH
Q 026868 17 IGVIISTLVLTWTVQYRGGLSLASDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVS--GTKKLRKLVHLSLQFIAFLLS 94 (231)
Q Consensus 17 lgi~~~~lv~~W~~~~~gG~~w~~~~~~~~F~~HP~lM~~gfv~l~~~ail~~r~~~--~~k~~~~~iH~~Lq~la~~~~ 94 (231)
.|+..++.+-.|..-.+.=++-+.. ||.. .-=++.-++++-...++.. .+.+..+.+=|..|-+-.+..
T Consensus 3 iGigAT~vMDlw~~l~~~~~~i~~~------~~~~---vGRw~~~~~~G~~~h~~i~~~~~v~~E~~~GW~~HY~iGi~f 73 (150)
T PF11158_consen 3 IGIGATLVMDLWALLLKRLFGIPSL------NYAL---VGRWLGHLRRGRFFHQSIAQAPPVPGERILGWLAHYAIGIAF 73 (150)
T ss_pred ehHHHHHHHHHHHHHHHHHcCCCCC------Cchh---hhhHhhhccCCcEeccchhhCCCCcchHHHHHHHHHHHHHHH
Confidence 4777888888888755432222211 2211 1112222334433332211 112223344445554333333
Q ss_pred HHHHHHHHhhcccCCCCCccccchhhHHHHH--HHHHHHHhhhhhhhcccCCCcccc--cccchhhHHHHHHHHHHHH
Q 026868 95 LIGVWAALKFHNDKGIDNFYSLHSWLGLACV--FLFGIQWAAGFTTFWYPGGSKNGR--ASLLPWHVFLGVYIYALAV 168 (231)
Q Consensus 95 ~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~--il~~lQ~~~G~~~~~~p~~~~~~r--~~~~~~H~~~G~~~~~l~~ 168 (231)
..-+..+...+ -..+|.+.+ ==..|+++. -++..|..+|+- +.-.+.++..+ -.-.-.|..+|..+|+.+.
T Consensus 74 a~~~~~l~g~~-wl~~Pt~~~-ali~G~~tvl~p~~imqP~lG~G-~aas~tP~p~~~r~~sl~aH~vfG~gLyl~~~ 148 (150)
T PF11158_consen 74 AVLYALLWGPG-WLSRPTLLP-ALIFGLVTVLAPFFIMQPALGAG-IAASKTPNPWKARLRSLIAHLVFGLGLYLSAL 148 (150)
T ss_pred HHHHHHHHhhc-cccCCchHH-HHHHHHHHHHHHHHHHHHHHhcc-hhhccCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333222 222343322 123566665 467889999985 22333343333 3345789999999988664
No 78
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=29.45 E-value=3.7e+02 Score=23.18 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCc------cccchhhHHHHHHHHHHHHhhhhh
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGI-DNF------YSLHSWLGLACVFLFGIQWAAGFT 137 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~-~hf------~S~Hs~lGl~~~il~~lQ~~~G~~ 137 (231)
.+..||+.=++-+.+.+.|+......-..++. +.. ..+|-++|.+.+.+.+.-.+.|+.
T Consensus 18 ~Ri~HW~~Al~i~~l~~tG~~i~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~w~~~ 83 (235)
T PRK10171 18 VRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFV 83 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35689999888888888888752111111111 111 347999999999999998888885
No 79
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=29.41 E-value=5.2e+02 Score=24.82 Aligned_cols=75 Identities=15% Similarity=0.072 Sum_probs=36.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhHHHHHhhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCcccCC
Q 026868 152 LLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPEN-GKSEVLRAS 230 (231)
Q Consensus 152 ~~~~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~-~~~~~~~~~ 230 (231)
.+..|+..|..+.....+.....+.- ..++.. +.+.....+.+..|++..+....+-...-+.-. ..|+++.+.
T Consensus 176 ~~~~H~~~aa~~~g~f~v~~v~A~~l----lr~~~~-~~~~~~~~~~~~~~~i~~~~~~~~G~~~g~~v~~~QP~K~AA~ 250 (436)
T PF01654_consen 176 PRFLHMLLAAYLTGGFVVAGVSAYYL----LRGRDR-EYFRKSLKIGLVIGLIAAILQPFSGDWQGREVAEYQPMKLAAM 250 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccch-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCChHHHhh
Confidence 35689999988877666666655431 111111 222234445555565544444433332222111 455555554
Q ss_pred C
Q 026868 231 E 231 (231)
Q Consensus 231 ~ 231 (231)
|
T Consensus 251 E 251 (436)
T PF01654_consen 251 E 251 (436)
T ss_pred h
Confidence 4
No 80
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=28.66 E-value=1.9e+02 Score=19.56 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHheeccC-------CCcchhHHHHHHHHHHHHHH
Q 026868 53 LMVIGLVLLNGEAMLAYKTVS-------GTKKLRKLVHLSLQFIAFLL 93 (231)
Q Consensus 53 lM~~gfv~l~~~ail~~r~~~-------~~k~~~~~iH~~Lq~la~~~ 93 (231)
.+.+.++.++-.|++.++..+ .+|...+.+|...-...+++
T Consensus 8 ~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l 55 (64)
T PF14358_consen 8 LLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLIL 55 (64)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHH
Confidence 455566666777777765421 23455666776665544443
No 81
>PF13630 SdpI: SdpI/YhfL protein family
Probab=28.35 E-value=56 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=25.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhHH
Q 026868 149 RASLLPWHVFLGVYIYALAVATAATGILE 177 (231)
Q Consensus 149 r~~~~~~H~~~G~~~~~l~~~t~~lGl~e 177 (231)
.+.++..||+.|...+..|++....|+.-
T Consensus 20 ~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~ 48 (76)
T PF13630_consen 20 DENWKKAHRFAGKIFIIGGIVLLIIGIII 48 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998888764
No 82
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=27.95 E-value=4e+02 Score=23.01 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHheeccC-CC--cch------hHHHHHHHHHHHHHHHHHHHH
Q 026868 53 LMVIGLVLLNGEAMLAYKTVS-GT--KKL------RKLVHLSLQFIAFLLSLIGVW 99 (231)
Q Consensus 53 lM~~gfv~l~~~ail~~r~~~-~~--k~~------~~~iH~~Lq~la~~~~~iG~~ 99 (231)
++++.++.+...|.....+.+ .+ ... ...+|.....+-++..+.=++
T Consensus 24 ~~Al~i~~l~~tG~~i~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~ 79 (235)
T PRK10171 24 LTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIY 79 (235)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666676666665553332 11 111 245788777655555444444
No 83
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=27.73 E-value=4.4e+02 Score=23.43 Aligned_cols=46 Identities=17% Similarity=0.010 Sum_probs=33.9
Q ss_pred ccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHH
Q 026868 115 SLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYA 165 (231)
Q Consensus 115 S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~ 165 (231)
......+.....+..+|.+.|..+++..- + ......|...+..++.
T Consensus 254 ~~~~~~~~~~~~ll~~Qv~lGi~~v~~~~-p----~~l~~~H~~~a~ll~~ 299 (302)
T PF02628_consen 254 RALRRLAVLLLALLLLQVLLGILTVLTGL-P----VWLALLHQAGAALLLA 299 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c----HHHHHHHHHHHHHHHH
Confidence 45677778888999999999998776522 2 3566788888877665
No 84
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=26.96 E-value=4.2e+02 Score=22.97 Aligned_cols=51 Identities=24% Similarity=0.011 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 026868 87 QFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTF 139 (231)
Q Consensus 87 q~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~ 139 (231)
..++.+..++|+.....++-.++.....| +.--.....+..+|.+.|+..-
T Consensus 93 G~~aGi~~liGl~~Ll~RRl~~~~vr~~s--~~~D~~~L~lLl~i~~tGl~~~ 143 (224)
T TIGR00351 93 GGASGVLCLIGGVLLLKRRLFSPRVRATS--TGADILILSLLLIQCLLGLLTI 143 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777776555554333222222 2234457788888888888753
No 85
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=26.93 E-value=1.6e+02 Score=25.07 Aligned_cols=62 Identities=21% Similarity=0.160 Sum_probs=43.9
Q ss_pred CccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 026868 112 NFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQ 183 (231)
Q Consensus 112 hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek~~f~~ 183 (231)
-..+.|.|-.=..+++..+...-|+..=-+ | +-+..-...|.+++++.++++.+|+.-. |.|
T Consensus 70 liR~~H~~gas~~~~~~~lH~~r~~~~gsY-------~-~pre~~W~~G~~l~~l~~~~af~GY~Lp--w~q 131 (200)
T cd00284 70 LIRSLHANGASMFFLMLYLHIFRGLYYGSY-------K-KPRELTWVIGVILLLLTMATAFMGYVLP--WGQ 131 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------c-chhHHHHHHHHHHHHHHHHHHHcccccC--chh
Confidence 346788888777777888888877752111 1 1124558899999999999999998765 444
No 86
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=26.53 E-value=4.8e+02 Score=23.50 Aligned_cols=159 Identities=13% Similarity=0.108 Sum_probs=78.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCcccchhHHHHHHHHHHHHHH-HHHheec--cC-CCcchh
Q 026868 4 PVVRFPIFLVIRVIGVIISTLVLTWTVQYRGGLSLASDNKDLIFNVHPVLMVIGLVLLNGE-AMLAYKT--VS-GTKKLR 79 (231)
Q Consensus 4 ~~~~~~~~~~~~~lgi~~~~lv~~W~~~~~gG~~w~~~~~~~~F~~HP~lM~~gfv~l~~~-ail~~r~--~~-~~k~~~ 79 (231)
..+++|....--.+.....++-..|+..- .|.+++.+..-..--+-..+-|..+..| +++++=. -. ++|+.-
T Consensus 39 ~~~~SpI~~tyY~llw~v~llnl~rc~vs----m~~~~~~~~~~~d~~lW~ilrfflL~lEvSvvvFgL~fghlds~~Si 114 (261)
T PF10160_consen 39 RHTRSPIFITYYALLWVVALLNLARCFVS----MWVCSPGKGGIADKVLWNILRFFLLSLEVSVVVFGLQFGHLDSRSSI 114 (261)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHHHHHH----HHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 45677866666677777788888898752 2554333222222333345555666666 3444421 11 355554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhh
Q 026868 80 KLVHLSLQFIAFLLSLIGVWAALKFHNDK---GIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWH 156 (231)
Q Consensus 80 ~~iH~~Lq~la~~~~~iG~~ai~~~k~~~---~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H 156 (231)
|+.=.+--.++.+-.+.=.+..+...+.. +..+.+ -|+..|+-..--.+.-.+-|++..+.|.+.++.-+..+-..
T Consensus 115 ~r~l~iT~~is~~~s~~Q~ilef~~~d~~l~~~~~~~~-~hgg~~fW~~~s~~f~~vY~~I~~L~~~r~r~~LPar~SFY 193 (261)
T PF10160_consen 115 KRTLLITGLISLADSLTQAILEFGFGDVPLFIENFDLF-GHGGWGFWFISSLVFALVYGFILILTPLRWRDRLPARPSFY 193 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeecCcccccCCCCCcC-CcCCeehHHHHHHHHHHHHHHHHHHHhccccccCCCCccHH
Confidence 54444444444444433333333333200 112222 46666666665555556666665554433222223444566
Q ss_pred HHHHHHHHHHH
Q 026868 157 VFLGVYIYALA 167 (231)
Q Consensus 157 ~~~G~~~~~l~ 167 (231)
++.|....+=+
T Consensus 194 ~Y~~~L~~LN~ 204 (261)
T PF10160_consen 194 RYVGILFLLNL 204 (261)
T ss_pred HHHHHHHHHHH
Confidence 66666555433
No 87
>PRK03735 cytochrome b6; Provisional
Probab=26.48 E-value=99 Score=27.00 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhcccCCC
Q 026868 119 WLGLACVFLFGIQWAAGFTTFWYPGGS 145 (231)
Q Consensus 119 ~lGl~~~il~~lQ~~~G~~~~~~p~~~ 145 (231)
+.|++..++.......|. ..|+..
T Consensus 127 ~~Gv~l~~l~~~~af~GY---~Lpw~q 150 (223)
T PRK03735 127 VVGVLIFFVTVGLGFTGY---LLPWDQ 150 (223)
T ss_pred HHHHHHHHHHHHHHhccc---cCCccc
Confidence 567777776666655555 477743
No 88
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=26.32 E-value=2e+02 Score=25.70 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH-hhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 026868 158 FLGVYIYALAVATAATGILEKVT-FLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPEN 221 (231)
Q Consensus 158 ~~G~~~~~l~~~t~~lGl~ek~~-f~~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~ 221 (231)
=.|+...+=+..++++|....-. +... +.-.+..-..|.+|+.+.+.+.. ++.-++|..
T Consensus 80 GLglg~liW~s~n~l~Gw~~grfGlFg~----~~~~~~~~~Ln~~G~~l~~~~~~-~f~fik~~~ 139 (254)
T PF07857_consen 80 GLGLGMLIWGSVNCLTGWASGRFGLFGL----DPQVPSSPWLNYIGVALVLVSGI-IFSFIKSEE 139 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhceeccc----cccccchhHHHHHHHHHHHHHHH-heeeecCCC
Confidence 34555566677889999775421 2211 22245677889999999888877 467777654
No 89
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=25.80 E-value=1.1e+02 Score=21.90 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhccCC------CCCCCcccCCC
Q 026868 204 LIVVLGGFVILALITPE------NGKSEVLRASE 231 (231)
Q Consensus 204 ~~~~~~~~v~~~~~~~~------~~~~~~~~~~~ 231 (231)
+|++.-++.+|++.+.. ++++|.|.|.|
T Consensus 10 ICVaii~lIlY~iYnr~~~~q~~~~~~e~y~~~~ 43 (68)
T PF05961_consen 10 ICVAIIGLILYGIYNRKKTTQNTNPSTENYEKME 43 (68)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCchhhcCCcc
Confidence 34444455578887642 23446665544
No 90
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=25.44 E-value=2.6e+02 Score=24.71 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=18.8
Q ss_pred HheeccC-CCcchhHHHHHHHHHHHHHHH
Q 026868 67 LAYKTVS-GTKKLRKLVHLSLQFIAFLLS 94 (231)
Q Consensus 67 l~~r~~~-~~k~~~~~iH~~Lq~la~~~~ 94 (231)
..||.-| ...+.+..+.|.+|++|..++
T Consensus 114 vcy~~gp~~~~rs~~~v~W~Lqligl~lI 142 (249)
T PF10225_consen 114 VCYRYGPPVDPRSRNFVKWALQLIGLVLI 142 (249)
T ss_pred hhcccCCCccHhHHHHHHHHHHHHHHHHH
Confidence 4455544 456677888999997766553
No 91
>MTH00167 COX1 cytochrome c oxidase subunit I; Provisional
Probab=25.22 E-value=6.6e+02 Score=24.69 Aligned_cols=148 Identities=17% Similarity=0.168 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHh-hcCcccccCCCCCcccchhHHHHHHHHHHHHHHHHH---heecc------CCCc
Q 026868 7 RFPIFLVIRVIGVIISTLVLTWTVQ-YRGGLSLASDNKDLIFNVHPVLMVIGLVLLNGEAML---AYKTV------SGTK 76 (231)
Q Consensus 7 ~~~~~~~~~~lgi~~~~lv~~W~~~-~~gG~~w~~~~~~~~F~~HP~lM~~gfv~l~~~ail---~~r~~------~~~k 76 (231)
+..+...+++.++-+.+-+.-|... ++|...|+. |.+-+++|++....|-+ ..... .++.
T Consensus 302 ~~~f~~~T~~iavPtgv~vf~w~~tl~~g~~~~~~----------p~~~~~~fi~~F~~GG~tGi~la~~~~d~~~HdTy 371 (512)
T MTH00167 302 RAYFTSATMIIAVPTGIKVFSWLATLHGGKIKWET----------PMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTY 371 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc----------HHHHHHHHHHHHHhhccchhhhcchHhhhhhccce
Confidence 4455556666666666666677754 344445541 55666666555544321 11111 1222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CCCccccchhhHHHH-HHHHHHHHhhhhhhhcccCCCccccccc
Q 026868 77 KLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKG---IDNFYSLHSWLGLAC-VFLFGIQWAAGFTTFWYPGGSKNGRASL 152 (231)
Q Consensus 77 ~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~---~~hf~S~Hs~lGl~~-~il~~lQ~~~G~~~~~~p~~~~~~r~~~ 152 (231)
-.--..|..+..-+......|+.-= ..|. .+ .+.+..+|-|+=.+- .+.+.-|...|+. -.|++-.+....+
T Consensus 372 ~VvaHFH~~l~~g~v~~~f~g~~yw-~P~~-~G~~~~~~l~~~~f~~~~iG~~~~f~p~~~~Gl~--GmPRR~~~Yp~~~ 447 (512)
T MTH00167 372 YVVAHFHYVLSMGAVFAIMAGFTHW-FPLF-TGLTLNETWTKIHFFVMFIGVNLTFFPQHFLGLA--GMPRRYSDYPDAY 447 (512)
T ss_pred eeccchhhhhehhHHHHHHHHHHHH-HHhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccceecccccHH
Confidence 2223356666554444445554421 1111 11 122344555554322 2444556666664 3444332333334
Q ss_pred chhhHHHHHHHHHHHH
Q 026868 153 LPWHVFLGVYIYALAV 168 (231)
Q Consensus 153 ~~~H~~~G~~~~~l~~ 168 (231)
.++|.......+++++
T Consensus 448 ~~~n~issiGa~i~~~ 463 (512)
T MTH00167 448 TLWNVVSSIGSLISLV 463 (512)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566655554444333
No 92
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=24.85 E-value=85 Score=24.85 Aligned_cols=61 Identities=21% Similarity=0.411 Sum_probs=39.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccC
Q 026868 76 KKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPG 143 (231)
Q Consensus 76 k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~ 143 (231)
++.-+.+|++.+.+..++.+++++..+..-..+++| .|=.++.. +.+......++.+++..
T Consensus 24 ~~r~riinliiG~vT~l~VLvtii~afvf~~~~p~p----~~iffavc---I~l~~~s~~lLI~WYR~ 84 (118)
T PF10856_consen 24 SARDRIINLIIGAVTSLFVLVTIISAFVFPQDPPKP----LHIFFAVC---ILLICISAILLIFWYRQ 84 (118)
T ss_pred CcccEEEEeehHHHHHHHHHHHHhheEEecCCCCCc----eEEehHHH---HHHHHHHHHhheeehhc
Confidence 333457899999999999999998777665544443 45555443 33333344566677754
No 93
>COG2322 Predicted membrane protein [Function unknown]
Probab=23.92 E-value=3.5e+02 Score=22.90 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=22.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 152 LLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 152 ~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
+...|..+.....-++.-+..+|...+
T Consensus 118 iL~~Hi~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 118 ILITHIILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcch
Confidence 457899999999999999999988765
No 94
>MTH00033 CYTB cytochrome b; Provisional
Probab=22.76 E-value=2.7e+02 Score=26.31 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCCC-----------CC----ccccchhhHHHHHHHHHHHHhhhhhhhcccCCCccccccc
Q 026868 88 FIAFLLSLIGVWAALKFHNDKGI-----------DN----FYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASL 152 (231)
Q Consensus 88 ~la~~~~~iG~~ai~~~k~~~~~-----------~h----f~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~ 152 (231)
..-.+..+.|+...+.+..+... .+ ..+.|.|=.=..+++..+...-|+. + +.- |
T Consensus 36 ~~~~~qiiTGi~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gAs~~f~~~ylHi~R~~~---~-gsY---~--- 105 (383)
T MTH00033 36 LCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLY---Y-GGY---S--- 105 (383)
T ss_pred HHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---c-ccc---c---
Confidence 33334578888877666643321 11 1456777665566666677666663 1 211 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 153 LPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 153 ~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
++.=...|..++++.++++.+|+.-.
T Consensus 106 r~~~W~~Gv~ll~l~m~~aF~GYvLp 131 (383)
T MTH00033 106 RVLTWIVGVLIFFIMMLTAFIGYVLP 131 (383)
T ss_pred ChHHHHHhHHHHHHHHHHHHhhhccc
Confidence 23347889999999999999998754
No 95
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=21.99 E-value=6.2e+02 Score=23.15 Aligned_cols=62 Identities=24% Similarity=0.146 Sum_probs=39.0
Q ss_pred cccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 114 YSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 114 ~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
-|+-+.++-++.+....+ .|.. |+.-+...+.+++.++.-+..+....++..+.......++
T Consensus 156 l~pf~ll~Gl~~v~~~~~--~GA~-~l~~kt~g~l~~rar~~a~~~~~~~~~~~~~~~~~~~~~~ 217 (328)
T PF02322_consen 156 LSPFSLLGGLAVVALFAL--HGAV-FLALKTEGELRERARRWALRLGLAALVLFLAFALWTPFEA 217 (328)
T ss_pred ccHHHHHHHHHHHHHHHH--HHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456666666555544443 3443 4454555567778888888888888777776665544433
No 96
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=21.80 E-value=4.3e+02 Score=21.43 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH
Q 026868 157 VFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 157 ~~~G~~~~~l~~~t~~lGl~ek 178 (231)
+.+..+...+..++++.|+.++
T Consensus 6 ~lF~~l~~Ff~~~~~vY~~~t~ 27 (137)
T PF12270_consen 6 KLFYGLAVFFLVVAVVYGFWTK 27 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666777888888776
No 97
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=21.78 E-value=5.6e+02 Score=22.63 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=16.2
Q ss_pred ccchhhHHHHHHH-HHHHHHHHHHhhH
Q 026868 151 SLLPWHVFLGVYI-YALAVATAATGIL 176 (231)
Q Consensus 151 ~~~~~H~~~G~~~-~~l~~~t~~lGl~ 176 (231)
+..|..+..-..+ +.+..+.+++|+.
T Consensus 175 k~Npgqkl~y~~v~~~~~~~livTGl~ 201 (261)
T PRK15006 175 KFNPLQQLAYLGVMYGLVPLLLLTGLL 201 (261)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666653 3455577888876
No 98
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=21.63 E-value=5.1e+02 Score=22.05 Aligned_cols=59 Identities=12% Similarity=-0.023 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhcc--cCCCc----------cc--ccccchhhHHHHHHHHHHHHHHHHHhhHH
Q 026868 119 WLGLACVFLFGIQWAAGFTTFWY--PGGSK----------NG--RASLLPWHVFLGVYIYALAVATAATGILE 177 (231)
Q Consensus 119 ~lGl~~~il~~lQ~~~G~~~~~~--p~~~~----------~~--r~~~~~~H~~~G~~~~~l~~~t~~lGl~e 177 (231)
.+|.++...+..|.+.|++.-++ |.... +. ...++..|++..-..+++...=+.=|+..
T Consensus 24 ~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~ 96 (200)
T cd00284 24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYY 96 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999875443 44211 11 12467899999998888877777777654
No 99
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=21.54 E-value=4.6e+02 Score=25.89 Aligned_cols=42 Identities=17% Similarity=0.061 Sum_probs=22.2
Q ss_pred HHHHHheeccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026868 63 GEAMLAYKTVSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKF 104 (231)
Q Consensus 63 ~~ail~~r~~~~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~ 104 (231)
..+++-|-.+......+|+.-.++-.+.+...+.+++.+|+|
T Consensus 580 s~~~~PYi~Fg~~d~yrKr~~ilIs~ivf~~Lla~Lvv~fy~ 621 (652)
T KOG2290|consen 580 SIIFLPYIDFGDFDLYRKRFYILISQIVFSGLLAILVVVFYN 621 (652)
T ss_pred HHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHheee
Confidence 333344433332234556655555556666666777776663
No 100
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=21.50 E-value=3.9e+02 Score=20.71 Aligned_cols=18 Identities=28% Similarity=0.089 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026868 83 HLSLQFIAFLLSLIGVWA 100 (231)
Q Consensus 83 H~~Lq~la~~~~~iG~~a 100 (231)
=.++..+|.++.++++..
T Consensus 104 ~~~~~~~ag~~~l~~l~~ 121 (172)
T PF13903_consen 104 AGILFILAGLCILIALIV 121 (172)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677777777777663
No 101
>CHL00070 petB cytochrome b6
Probab=21.27 E-value=5.4e+02 Score=22.27 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=45.6
Q ss_pred chhhHHHHHHHHHHHHhhhhhhhcc--cCCCc----------cc--ccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 117 HSWLGLACVFLFGIQWAAGFTTFWY--PGGSK----------NG--RASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 117 Hs~lGl~~~il~~lQ~~~G~~~~~~--p~~~~----------~~--r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
==++|-++..++..|.+.|++..++ |..+. +. .-.++..|++..-..+++..+=+.=|+...
T Consensus 33 ~~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~g 108 (215)
T CHL00070 33 FYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTG 108 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468999999999999999875443 44211 11 124678999999999999888888887654
No 102
>MTH00116 COX1 cytochrome c oxidase subunit I; Provisional
Probab=20.87 E-value=8.1e+02 Score=24.12 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHh-hcCcccccCCCCCcccchhHHHHHHHHHHHHHHH----HHhee-cc----CCCc
Q 026868 7 RFPIFLVIRVIGVIISTLVLTWTVQ-YRGGLSLASDNKDLIFNVHPVLMVIGLVLLNGEA----MLAYK-TV----SGTK 76 (231)
Q Consensus 7 ~~~~~~~~~~lgi~~~~lv~~W~~~-~~gG~~w~~~~~~~~F~~HP~lM~~gfv~l~~~a----il~~r-~~----~~~k 76 (231)
+..+...+++.++-+.+-+.-|... +++...|+. |.+.+++|+++...| +..-. .. .++.
T Consensus 302 ~~~f~~~T~~iaiPt~vkvf~w~~tl~~g~~~~~~----------p~l~~~~fi~~F~~GG~tGv~la~~~~d~~~HdTy 371 (515)
T MTH00116 302 RAYFTSATMIIAIPTGIKVFSWLATLHGGTIKWDP----------PMLWALGFIFLFTIGGLTGIVLANSSLDIVLHDTY 371 (515)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCc----------HHHHHHHHHHHHHhcccchhhhcchhhhhhhccch
Confidence 4455566677777777777788864 345555541 666777776665543 21111 11 1222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH---hhcccCCCCCccccchhhHHHHH-HHHHHHHhhhhhhhcccCCCccccccc
Q 026868 77 KLRKLVHLSLQFIAFLLSLIGVWAAL---KFHNDKGIDNFYSLHSWLGLACV-FLFGIQWAAGFTTFWYPGGSKNGRASL 152 (231)
Q Consensus 77 ~~~~~iH~~Lq~la~~~~~iG~~ai~---~~k~~~~~~hf~S~Hs~lGl~~~-il~~lQ~~~G~~~~~~p~~~~~~r~~~ 152 (231)
-.--..|..+..-+......|+.-=+ ..++. .+.+..+|-|+=.+-. +.+.-|-..|+. -.|++-.+....+
T Consensus 372 ~VvaHFH~vl~~g~v~~~~~g~~yw~P~~~Gr~~--~~~l~~~~fw~~~iG~~~~f~pmh~~Gl~--GmPRR~~~Yp~~~ 447 (515)
T MTH00116 372 YVVAHFHYVLSMGAVFAIMAGFTHWFPLFTGYTL--HQTWTKAQFGVMFTGVNLTFFPQHFLGLA--GMPRRYSDYPDAY 447 (515)
T ss_pred hhhcchheeeehhHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccceeccccchH
Confidence 22233566665444434444544211 11111 2234556666543333 444556677764 3555433333345
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 026868 153 LPWHVFLGVYIYALAVATAAT 173 (231)
Q Consensus 153 ~~~H~~~G~~~~~l~~~t~~l 173 (231)
.++|.......+++++..+..
T Consensus 448 ~~~n~~ssiGs~i~~ig~llF 468 (515)
T MTH00116 448 TLWNTISSIGSLISMTAVIML 468 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777666655555554433
No 103
>KOG4026 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.84 E-value=2.6e+02 Score=24.28 Aligned_cols=15 Identities=33% Similarity=0.160 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 026868 84 LSLQFIAFLLSLIGV 98 (231)
Q Consensus 84 ~~Lq~la~~~~~iG~ 98 (231)
..+|..|.++.++|.
T Consensus 114 g~~q~~a~l~milGc 128 (207)
T KOG4026|consen 114 GWMQGIAGLCMILGC 128 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444443333333
No 104
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=20.77 E-value=2.6e+02 Score=18.45 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=16.8
Q ss_pred HHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 026868 131 QWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAAT 173 (231)
Q Consensus 131 Q~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~l 173 (231)
..+.|+..+..|.. ...-.-...|....+-|+.....
T Consensus 6 ~iv~Gi~~l~~p~~------~~~~~~~i~g~~~i~~Gi~~l~~ 42 (72)
T PF03729_consen 6 FIVLGILLLFNPDA------SLAALAIILGIWLIISGIFQLIS 42 (72)
T ss_pred HHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665555542 22223344444444444444443
No 105
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=20.39 E-value=7.1e+02 Score=25.04 Aligned_cols=57 Identities=18% Similarity=0.369 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhcccCCCccc-------ccccchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 118 SWLGLACVFLFGIQWAAGFTTFWYPGGSKNG-------RASLLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 118 s~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~-------r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
-|...+..++..+- +.+...|++|...++. |..+++ =-+.|.+++..|++..++|++
T Consensus 196 Rw~~~~~~i~~~i~-~vl~~~fY~PP~~~~~~~~~~s~~~~l~~-lD~IG~~L~~~Gl~LfLlgl~ 259 (599)
T PF06609_consen 196 RWIFYIFIIWSGIA-LVLIFFFYFPPPRAQLHGRKLSKREQLKE-LDWIGIFLFIAGLALFLLGLS 259 (599)
T ss_pred chHHHHHHHHHHHH-HHHHHHHhCCCchhhhccccCcHHHHHHH-hhHHHHHHHHHHHHHHHHHHh
Confidence 34444444444443 3455545565432111 112333 246899999999999999998
No 106
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=20.37 E-value=5.2e+02 Score=21.64 Aligned_cols=67 Identities=9% Similarity=0.004 Sum_probs=46.2
Q ss_pred CCCccccchhhHHHHHHHHHHHHhhhhhhhc--ccCC--CcccccccchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 110 IDNFYSLHSWLGLACVFLFGIQWAAGFTTFW--YPGG--SKNGRASLLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 110 ~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~--~p~~--~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
..+++......-....++..+|.+.|+..+. +|.. +.........+|...+....++.++=+.+.+.
T Consensus 101 ~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~~~~~~~~~~~~~~~~~~~~~H~~~a~l~~~~vi~Hiy~a~~ 171 (204)
T TIGR01583 101 AGKYNAGQKSWYWILVLGGFLMIITGIFMWFLDFPSTAFSIELLRISALIHNFSAIILAVGFIVHIYMAVF 171 (204)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557777777777777778899999999763 2432 22222345679999999877777766666654
No 107
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=20.05 E-value=1.4e+02 Score=28.51 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=8.5
Q ss_pred cchhhHHHHHHHHHHHHH
Q 026868 152 LLPWHVFLGVYIYALAVA 169 (231)
Q Consensus 152 ~~~~H~~~G~~~~~l~~~ 169 (231)
...+|++.|++.++++++
T Consensus 75 ~Y~~HK~~sIlailL~l~ 92 (438)
T COG4097 75 IYRFHKYTSILAILLLLA 92 (438)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 344555555444444443
No 108
>PLN02292 ferric-chelate reductase
Probab=20.01 E-value=1.3e+02 Score=30.80 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=18.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q 026868 151 SLLPWHVFLGVYIYALAVATAA 172 (231)
Q Consensus 151 ~~~~~H~~~G~~~~~l~~~t~~ 172 (231)
...++||+.|+.+++++++=.+
T Consensus 204 ~f~~yHRWlGrii~ll~~lH~i 225 (702)
T PLN02292 204 SSIKYHIWLGHLVMTLFTSHGL 225 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999998876443
Done!