Query 026868
Match_columns 231
No_of_seqs 170 out of 554
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 00:11:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kqf_C FDH-N gamma, formate de 79.3 8.5 0.00029 31.3 8.3 96 79-176 14-133 (217)
2 4gd3_A NI/Fe-hydrogenase 1 B-t 74.2 7.7 0.00026 32.2 6.7 59 79-137 18-83 (235)
3 2lat_A Dolichyl-diphosphooligo 48.8 14 0.00048 22.5 2.6 25 195-221 8-32 (37)
4 1rkl_A Dolichyl-diphosphooligo 43.1 45 0.0015 20.0 4.3 24 195-220 8-31 (36)
5 2i68_A Protein EMRE; transmemb 22.2 1.4E+02 0.0046 22.8 5.0 15 200-214 88-102 (137)
6 1kqf_C FDH-N gamma, formate de 11.6 5.5E+02 0.019 20.1 11.8 61 115-175 111-174 (217)
7 1pp9_C Cytochrome B; cytochrom 11.0 3.2E+02 0.011 24.5 5.2 55 114-178 80-134 (379)
8 4gd3_A NI/Fe-hydrogenase 1 B-t 10.4 6.4E+02 0.022 20.1 13.5 57 122-178 134-206 (235)
9 3ldc_A Calcium-gated potassium 8.1 5E+02 0.017 17.2 6.1 27 186-213 44-70 (82)
10 1q16_C Cytochrome B-NR, respir 7.4 5.9E+02 0.02 20.2 5.1 12 154-165 185-196 (225)
No 1
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=79.33 E-value=8.5 Score=31.31 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc----ccC-CCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcc------
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALKFH----NDK-GIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKN------ 147 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~~k----~~~-~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~------ 147 (231)
.+..||+.=++-+.+.+.|+...+-.. +.. +......+|-++|.+.+.+.+.-.+ .......|. +.+
T Consensus 14 ~R~~HW~~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r~~-r~~r~~~p~-~~~~~~~~~ 91 (217)
T 1kqf_C 14 DRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFV-RFVHHNIPD-KKDIPWLLN 91 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGSCCC-GGGHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHchhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCC-hhHHHHHHH
Confidence 466899888777777788876542110 000 1112467899999998887776332 222222333 211
Q ss_pred -------------cccccchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 148 -------------GRASLLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 148 -------------~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
......+..+..=..++++..+..++|+.
T Consensus 92 ~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~ 133 (217)
T 1kqf_C 92 IVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVI 133 (217)
T ss_dssp HHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234566666667778888888888875
No 2
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=74.17 E-value=7.7 Score=32.18 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC--C-----ccccchhhHHHHHHHHHHHHhhhhh
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGID--N-----FYSLHSWLGLACVFLFGIQWAAGFT 137 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~~~~--h-----f~S~Hs~lGl~~~il~~lQ~~~G~~ 137 (231)
.+..||+.=++-+.+.+.|...........+.+ + ...+|-++|.+.+++.++-.+.++.
T Consensus 18 ~R~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 18 VRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899887777777777877543221101111 2 1258999999999999998888875
No 3
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=48.84 E-value=14 Score=22.46 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Q 026868 195 ALLVNSLGILIVVLGGFVILALITPEN 221 (231)
Q Consensus 195 ~~~~n~~gl~~~~~~~~v~~~~~~~~~ 221 (231)
..++|++|+. .+..+|+|-.+....
T Consensus 8 ~~lan~lG~~--~~~LIVlYH~v~~n~ 32 (37)
T 2lat_A 8 AIFANMLGVS--LFLLVVLYHYVAVNN 32 (37)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhcCc
Confidence 4689999998 566666666555444
No 4
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=43.06 E-value=45 Score=20.04 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q 026868 195 ALLVNSLGILIVVLGGFVILALITPE 220 (231)
Q Consensus 195 ~~~~n~~gl~~~~~~~~v~~~~~~~~ 220 (231)
..++|++|+. .+..+|+|-.+...
T Consensus 8 ~~lan~lG~~--~~~LIvlYH~v~~n 31 (36)
T 1rkl_A 8 NSLAITFGIV--MMTLIVIYHAVDST 31 (36)
T ss_dssp GHHHHHHHHH--HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhcc
Confidence 5789999998 66666777665543
No 5
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=22.24 E-value=1.4e+02 Score=22.77 Aligned_cols=15 Identities=20% Similarity=0.600 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHH
Q 026868 200 SLGILIVVLGGFVIL 214 (231)
Q Consensus 200 ~~gl~~~~~~~~v~~ 214 (231)
.+|+.+++.|+..+-
T Consensus 88 ~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 88 IIGMMLICAGVLIIN 102 (137)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 478888888877553
No 6
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=11.64 E-value=5.5e+02 Score=20.08 Aligned_cols=61 Identities=7% Similarity=-0.065 Sum_probs=38.1
Q ss_pred ccchhhHHHHHHHHHHHHhhhhhhhcc--c-CCCcccccccchhhHHHHHHHHHHHHHHHHHhh
Q 026868 115 SLHSWLGLACVFLFGIQWAAGFTTFWY--P-GGSKNGRASLLPWHVFLGVYIYALAVATAATGI 175 (231)
Q Consensus 115 S~Hs~lGl~~~il~~lQ~~~G~~~~~~--p-~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl 175 (231)
......=.....+..+|.+.|++.... + ..+.........+|.+.+.++.++.++=+...+
T Consensus 111 ~~~~~~~~~l~~l~~~~~~TG~~~~~~~~~~~~~~~~~~~~~~iH~~~a~~l~~~v~~Hv~~al 174 (217)
T 1kqf_C 111 AGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAF 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444466677788999999986531 1 112223345678999999888777665444443
No 7
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=11.00 E-value=3.2e+02 Score=24.49 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=35.1
Q ss_pred cccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 114 YSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 114 ~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
.+.|.+-.-.-+++..+...-|+. + +.- .++-=...|..++++.++++.+|+.-.
T Consensus 80 R~~H~~gAs~ffi~~ylHi~Rgly---y-gsy------~~~~~W~~Gv~l~ll~m~~aF~GYvLP 134 (379)
T 1pp9_C 80 RYMHANGASMFFICLYMHVGRGLY---Y-GSY------TFLETWNIGVILLLTVMATAFMGYVLP 134 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---H-TGG------GSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---H-hee------cCcceehhhHHHHHHHHHHHheeeecc
Confidence 455666555555555555555553 1 111 112257789999999999999999754
No 8
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=10.37 E-value=6.4e+02 Score=20.09 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhhhhhccc-CCC---------------cccccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 122 LACVFLFGIQWAAGFTTFWYP-GGS---------------KNGRASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 122 l~~~il~~lQ~~~G~~~~~~p-~~~---------------~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
.+..++..+|.+.|++..... +.+ .........+|.+.+.++..+.++=+...+...
T Consensus 134 ~~l~~ll~~~~ltG~~~~~~~~~~~~f~~~~~~~~~f~~~~~~~~~~~~iH~~~a~~l~~~v~lHv~aal~h~ 206 (235)
T 4gd3_A 134 FGYFLMSVFMIITGFALYSEHSQYAIFAPFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALRED 206 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCSSCGGGHHHHHHHHHHTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCcccchhhHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888754220 111 011234567888888888777776666666543
No 9
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=8.13 E-value=5e+02 Score=17.21 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=14.8
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHH
Q 026868 186 HVISRYSTEALLVNSLGILIVVLGGFVI 213 (231)
Q Consensus 186 ~~~~~~~~e~~~~n~~gl~~~~~~~~v~ 213 (231)
+| .+..|..........+..++|+.+.
T Consensus 44 Gy-Gdi~P~t~~~r~~~~~~~~~G~~~~ 70 (82)
T 3ldc_A 44 GY-GDYSPHTPLGMYFTCTLIVLGIGTF 70 (82)
T ss_dssp CC-CSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCCCCCccHHHHHHHHHHHHHHHH
Confidence 44 4555555555555666566665543
No 10
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=7.43 E-value=5.9e+02 Score=20.25 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHH
Q 026868 154 PWHVFLGVYIYA 165 (231)
Q Consensus 154 ~~H~~~G~~~~~ 165 (231)
..|...+...++
T Consensus 185 ~~Hi~~~~~~l~ 196 (225)
T 1q16_C 185 RLHLVLGMTLFL 196 (225)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667776665543
Done!