Query 026868
Match_columns 231
No_of_seqs 170 out of 554
Neff 6.4
Searched_HMMs 13730
Date Tue Mar 26 00:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026868.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026868hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfc_ f.21.1.1 (C:) Formate 59.5 19 0.0014 27.0 8.2 98 79-176 13-132 (216)
2 d1kqfc_ f.21.1.1 (C:) Formate 32.1 89 0.0065 22.9 11.2 68 108-176 103-174 (216)
3 d1q90b_ f.21.1.2 (B:) Cytochro 21.5 46 0.0034 25.6 4.3 58 113-178 79-136 (212)
4 d3cx5c2 f.21.1.2 (C:1-261) Mit 19.2 2E+02 0.014 22.4 10.0 57 120-176 32-102 (261)
5 d1xmec1 f.23.9.1 (C:2-34) Bact 17.9 71 0.0052 17.0 3.2 20 12-32 7-26 (33)
6 d1v54a_ f.24.1.1 (A:) Mitochon 16.1 3.1E+02 0.023 23.4 9.6 172 51-231 303-493 (514)
7 d1q90b_ f.21.1.2 (B:) Cytochro 15.7 2.2E+02 0.016 21.4 9.7 62 115-176 28-103 (212)
8 d3cx5c2 f.21.1.2 (C:1-261) Mit 15.2 97 0.0071 24.4 5.0 57 114-178 79-135 (261)
9 d2axtj1 f.23.32.1 (J:7-40) Pho 14.4 81 0.0059 17.1 2.9 23 7-29 1-23 (34)
10 d1xmea1 f.24.1.1 (A:14-562) Ba 9.9 4.3E+02 0.031 22.5 8.1 26 115-143 57-82 (549)
No 1
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=59.55 E-value=19 Score=27.01 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccC-----CCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCCC--------
Q 026868 79 RKLVHLSLQFIAFLLSLIGVWAALKFHNDK-----GIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGS-------- 145 (231)
Q Consensus 79 ~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~-----~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~-------- 145 (231)
-+..||..-++-+++.+.|+..-+..-... .......+|-++|.+.....+.-....+-....+...
T Consensus 13 ~Rl~HW~~a~~~i~L~~TGl~l~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (216)
T d1kqfc_ 13 DRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIV 92 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCCGGGHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcchhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 455788888887888888877643221110 1112245688877766655555443333211111100
Q ss_pred ---------cccccccchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 146 ---------KNGRASLLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 146 ---------~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
.....++.+..+......+++...-+.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~n~~qkl~~~~~~~~~~~~~~TGl~ 132 (216)
T d1kqfc_ 93 EVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVI 132 (216)
T ss_dssp HHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCccHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001245688888888888888888889876
No 2
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=32.06 E-value=89 Score=22.89 Aligned_cols=68 Identities=7% Similarity=0.025 Sum_probs=49.0
Q ss_pred CCCCCccccchhhHHHHHHHHHHHHhhhhhhhcccCC----CcccccccchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 108 KGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG----SKNGRASLLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 108 ~~~~hf~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~----~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
.+...++....+......+...++.+.|+..+. |.. +.........+|.+...++..+.++=+.+.+.
T Consensus 103 ~~~~~~n~~qkl~~~~~~~~~~~~~~TGl~l~~-~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi~Hvy~a~~ 174 (216)
T d1kqfc_ 103 ADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWR-PYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174 (216)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCT-TTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345677788889999999999999999998653 332 12222345579999988888887777766653
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=21.47 E-value=46 Score=25.59 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=43.7
Q ss_pred ccccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 113 FYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 113 f~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
..+.|.|-.=..+++..++..-++. + +.-+ +-+..-...|..++++.++++.+|+.-+
T Consensus 79 iR~lH~~gAs~~~~~~~lHm~r~~~---~-gsyk----~pre~~W~~Gv~l~~l~m~~aftGY~Lp 136 (212)
T d1q90b_ 79 IRSIHRWSASMMVLMMVLHVFRVYL---T-GGFK----RPRELTWVTGVIMAVCTVSFGVTGYSLP 136 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---T-TTTS----SSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcccccccchHHHHHHHHHHHHHHH---c-Cccc----CcccceehHhHHHHHHHHHHHHhhhhcc
Confidence 4678988888888888888887764 1 2111 2235778899999999999999998754
No 4
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.24 E-value=2e+02 Score=22.41 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhcc--cCCCcc----------c--ccccchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 120 LGLACVFLFGIQWAAGFTTFWY--PGGSKN----------G--RASLLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 120 lGl~~~il~~lQ~~~G~~~~~~--p~~~~~----------~--r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
+|-++...++.|.+.|++.-.+ |..... . .-.++..|++..-..+++...=+.-|+.
T Consensus 32 ~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~ 102 (261)
T d3cx5c2 32 MGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLY 102 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHH
Confidence 5777777777777777654433 322111 0 1134566766666666666665555554
No 5
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=17.88 E-value=71 Score=16.96 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026868 12 LVIRVIGVIISTLVLTWTVQY 32 (231)
Q Consensus 12 ~~~~~lgi~~~~lv~~W~~~~ 32 (231)
.++-++-++.++++ +|...|
T Consensus 7 al~vi~il~l~ilv-fw~gv~ 26 (33)
T d1xmec1 7 ALAVILVLTLTILV-FWLGVY 26 (33)
T ss_dssp HHHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHHHH
Confidence 34333444444444 788754
No 6
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.12 E-value=3.1e+02 Score=23.38 Aligned_cols=172 Identities=9% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHheeccC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccC-----CCCCccccchhhHHH
Q 026868 51 PVLMVIGLVLLNGEAMLAYKTVS--GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDK-----GIDNFYSLHSWLGLA 123 (231)
Q Consensus 51 P~lM~~gfv~l~~~ail~~r~~~--~~k~~~~~iH~~Lq~la~~~~~iG~~ai~~~k~~~-----~~~hf~S~Hs~lGl~ 123 (231)
..+++.-+..-.|.++-++...- ...+.++..-...........++|-.-...+-+.. +...|.--|==.
T Consensus 303 ~~f~~~T~~IaiPt~vkvfnwi~T~~~g~~~~~~~~l~~l~fi~~F~~GG~tGi~la~~~~D~~lHdTy~VVaHFH~--- 379 (514)
T d1v54a_ 303 AYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHY--- 379 (514)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTBHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHhhhhheecccchhheeeccceeEEeeeee---
Q ss_pred HHHHHHHHHhhhhhhhcccCC-CcccccccchhhHHHHHHHHHHHHHHH-HHhhHHHHHhhhccccccCCchhHHHHH--
Q 026868 124 CVFLFGIQWAAGFTTFWYPGG-SKNGRASLLPWHVFLGVYIYALAVATA-ATGILEKVTFLQTNHVISRYSTEALLVN-- 199 (231)
Q Consensus 124 ~~il~~lQ~~~G~~~~~~p~~-~~~~r~~~~~~H~~~G~~~~~l~~~t~-~lGl~ek~~f~~~~~~~~~~~~e~~~~n-- 199 (231)
++..-.+=.++|-..|++|+. .+...+++.++|-+.-.+.+.+..... .+|+. -..+.+ .+|+++-..-|
T Consensus 380 vl~~g~v~~~~a~~y~w~Pk~~Gr~~~e~l~~~~f~~~fiG~~~~f~pmh~lGl~-----GmpRR~-~~Y~~~~~~~n~~ 453 (514)
T d1v54a_ 380 VLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLS-----GMPRRY-SDYPDAYTMWNTI 453 (514)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTHHHHHHHT-----TCBTTC-SSCCGGGHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCcc-cCCcHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHHHHHHhccCCCCCCCcccCCC
Q 026868 200 --------SLGILIVVLGGFVILALITPENGKSEVLRASE 231 (231)
Q Consensus 200 --------~~gl~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 231 (231)
.++.++.++-+...+.--++...+|.+-+-+|
T Consensus 454 ~siG~~i~~~~~~~f~~~~~~s~~~~~~~~~~pw~~~tlE 493 (514)
T d1v54a_ 454 SSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLE 493 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCBBCCCTTGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChh
No 7
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=15.73 E-value=2.2e+02 Score=21.42 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=42.5
Q ss_pred ccchhhHHHHHHHHHHHHhhhhhhhcc--cCCCccc-------c-----cccchhhHHHHHHHHHHHHHHHHHhhH
Q 026868 115 SLHSWLGLACVFLFGIQWAAGFTTFWY--PGGSKNG-------R-----ASLLPWHVFLGVYIYALAVATAATGIL 176 (231)
Q Consensus 115 S~Hs~lGl~~~il~~lQ~~~G~~~~~~--p~~~~~~-------r-----~~~~~~H~~~G~~~~~l~~~t~~lGl~ 176 (231)
|+-=.+|-++...+..|.+.|++..++ |..+... | ..++..|++..-..+++..+=+.=++.
T Consensus 28 ~~~~~~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~ 103 (212)
T d1q90b_ 28 NIFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYL 103 (212)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHH
Confidence 344558999999999999999975554 3322111 1 145688999888888877766665543
No 8
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.19 E-value=97 Score=24.35 Aligned_cols=57 Identities=25% Similarity=0.161 Sum_probs=43.4
Q ss_pred cccchhhHHHHHHHHHHHHhhhhhhhcccCCCcccccccchhhHHHHHHHHHHHHHHHHHhhHHH
Q 026868 114 YSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEK 178 (231)
Q Consensus 114 ~S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ek 178 (231)
.+.|.|-.=..+++..++..-|+.. +.-+ .-+..-...|..++++.++++.+|+.-.
T Consensus 79 R~~H~~ga~~~~~~~~lH~~r~~~~----gsy~----~pre~~W~~Gv~l~~l~~~~af~GY~Lp 135 (261)
T d3cx5c2 79 RYLHANGASFFFMVMFMHMAKGLYY----GSYR----SPRVTLWNVGVIIFILTIATAFLGYCCV 135 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----TTTS----TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHHHHh----cccc----CccchhHHhhHHHHHHHHHHHHhhhhcC
Confidence 6788888888888888888888751 2111 1234667899999999999999998764
No 9
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.36 E-value=81 Score=17.08 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 026868 7 RFPIFLVIRVIGVIISTLVLTWT 29 (231)
Q Consensus 7 ~~~~~~~~~~lgi~~~~lv~~W~ 29 (231)
|.|+-+++.+-|++.+.++++.+
T Consensus 1 riPLWlv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 1 RIPLWIVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeeehhhhhhHhheeeee
Confidence 46888899999999999888755
No 10
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=9.86 E-value=4.3e+02 Score=22.45 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=18.5
Q ss_pred ccchhhHHHHHHHHHHHHhhhhhhhcccC
Q 026868 115 SLHSWLGLACVFLFGIQWAAGFTTFWYPG 143 (231)
Q Consensus 115 S~Hs~lGl~~~il~~lQ~~~G~~~~~~p~ 143 (231)
|.|+ .+.+..+..+...|+..+..|+
T Consensus 57 T~Hg---~~mif~f~~~~~~g~~~y~vp~ 82 (549)
T d1xmea1 57 TLHG---VLNAIVFTQLFAQAIMVYLPAR 82 (549)
T ss_dssp HHHH---HHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 4466667778888998888776
Done!