BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026870
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LCC|A Chain A, Structure Of A Sam-Dependent Halide Methyltransferase From
Arabidopsis Thaliana
Length = 235
Score = 243 bits (620), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 116/186 (62%), Positives = 140/186 (75%), Gaps = 4/186 (2%)
Query: 46 KNREEVENDNVIKSHPRVNKLQQLMH-IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS 104
+N ++ NVI P ++ +H GGWEKCWEE +TPWD G+ P+IVHL +
Sbjct: 6 QNSDQSNGGNVI---PTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLVDT 62
Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
+LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E S P A++ SF+K
Sbjct: 63 SSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKE 122
Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGPP
Sbjct: 123 DVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP 182
Query: 225 YKVSVS 230
YKV VS
Sbjct: 183 YKVDVS 188
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 101 LHQSGALPKG-RALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAK 157
LH P G + L GCG G V +A +P+ + ++IS +++KA E ++ K
Sbjct: 29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE-NTEKNGIK 87
Query: 158 FVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRA--AWAQKIKDFLKPDGELITL 212
V FL+A+ F+ P E D FD+ F C + +++ + +K LKP G + +
Sbjct: 88 NVKFLQANIFSL-PFE--DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 89 WDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE 148
WD G + II Q + L GCG GY ++ VG++IS++ I+K +E
Sbjct: 35 WDSGSRSTIIPFFEQY-VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVXIQKGKE 93
Query: 149 LSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG 207
P+ +SF+K D + E F+ I E +RA +IK LK DG
Sbjct: 94 RGEG-PD---LSFIKGDLSSLPFENEQFEAIXAINSLEWTEEPLRA--LNEIKRVLKSDG 147
>pdb|1PJZ|A Chain A, Solution Structure Of Thiopurine Methyltransferase From
Pseudomonas Syringae
Length = 203
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Query: 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN----AKFVSFL 162
+P R LVP CG D+ ++ +VVG E+S+ A+++ P+ F +
Sbjct: 21 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYA 80
Query: 163 KADFFTWCPTELFDL----------IFDYTFFCAIEPEMRAAWAQKIKDFL--KPDGELI 210
WC + F L +D A+ +MR + Q ++ + G LI
Sbjct: 81 APGIEIWC-GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139
Query: 211 TLMFPISDHVGGPPYKV 227
TL + + + GPP+ V
Sbjct: 140 TLEYDQA-LLEGPPFSV 155
>pdb|2H11|A Chain A, Amino-Terminal Truncated Thiopurine S-Methyltransferase
Complexed With S-Adenosyl-L-Homocysteine
pdb|2H11|B Chain B, Amino-Terminal Truncated Thiopurine S-Methyltransferase
Complexed With S-Adenosyl-L-Homocysteine
Length = 232
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 23/176 (13%)
Query: 78 WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVG 135
W+ W G T + Q ++ HL G R P CG ++ A VVG
Sbjct: 16 WQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVG 75
Query: 136 LEISDIAIKK---------AEELSSSLPNAKFVSFLKADFFTWCPTEL---------FDL 177
+EIS++ I++ +EE + +P K + +C + FD+
Sbjct: 76 VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDM 135
Query: 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSE 231
I+D AI P R +A + L + L L + + H GPP+ V +E
Sbjct: 136 IWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH-PGPPFYVPHAE 190
>pdb|2P35|A Chain A, Crystal Structure Of Trans-Aconitate Methyltransferase
From Agrobacterium Tumefaciens
pdb|2P35|B Chain B, Crystal Structure Of Trans-Aconitate Methyltransferase
From Agrobacterium Tumefaciens
Length = 259
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 116 GCGTGYDVVAMASPERY----VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171
GCG G + +RY + G++ D ++KA + LPN +F KAD TW P
Sbjct: 41 GCGPGNSTELLT--DRYGVNVITGIDSDDDXLEKA---ADRLPN---TNFGKADLATWKP 92
Query: 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
+ DL++ F + P+ A +Q + D L+ G L
Sbjct: 93 AQKADLLYANAVFQWV-PDHLAVLSQ-LXDQLESGGVL 128
>pdb|2BZG|A Chain A, Crystal Structure Of Thiopurine S-Methyltransferase
Length = 232
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 23/176 (13%)
Query: 78 WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVG 135
W+ W G T + Q ++ HL G R P CG + A VVG
Sbjct: 16 WQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEXKWFADRGHSVVG 75
Query: 136 LEISDIAIKK---------AEELSSSLPNAKFVSFLKADFFTWCPTEL---------FDL 177
+EIS++ I++ +EE + +P K + +C + FD
Sbjct: 76 VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDX 135
Query: 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSE 231
I+D AI P R +A L + L L + + H GPP+ V +E
Sbjct: 136 IWDRGALVAINPGDRKCYADTXFSLLGKKFQYLLCVLSYDPTKHP-GPPFYVPHAE 190
>pdb|3BGD|A Chain A, Thiopurine S-Methyltransferase
pdb|3BGD|B Chain B, Thiopurine S-Methyltransferase
pdb|3BGI|A Chain A, Thiopurine S-Methyltransferase
pdb|3BGI|B Chain B, Thiopurine S-Methyltransferase
Length = 260
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 21/141 (14%)
Query: 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKK---------AEELSSSLPNAKFVSF 161
R P CG ++ A VVG+EIS+I I++ EE + + AK
Sbjct: 79 RVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKS 138
Query: 162 LKADFFTWCPTEL---------FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI-- 210
+C + FD I+D AI P +A I L+ + + +
Sbjct: 139 SSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 198
Query: 211 TLMFPISDHVGGPPYKVSVSE 231
L + + H GPP+ V +E
Sbjct: 199 VLSYDPTKH-AGPPFYVPSAE 218
>pdb|2GB4|A Chain A, Crystal Structure Of Thiopurine Methyltransferase
(18204406) From Mus Musculus At 1.35 A Resolution
pdb|2GB4|B Chain B, Crystal Structure Of Thiopurine Methyltransferase
(18204406) From Mus Musculus At 1.35 A Resolution
Length = 252
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 21/141 (14%)
Query: 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKK---------AEELSSSLPNAKFVSF 161
R P CG ++ A VVG+EIS+I I++ EE + + AK
Sbjct: 71 RVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKS 130
Query: 162 LKADFFTWCPTEL---------FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI-- 210
+C + FD I+D AI P +A I L+ + + +
Sbjct: 131 SSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190
Query: 211 TLMFPISDHVGGPPYKVSVSE 231
L + + H GPP+ V +E
Sbjct: 191 VLSYDPTKH-AGPPFYVPSAE 210
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 111 RALVPGCGTGYDVVAMASPERYVVGLEISD----IAIKKAEELSSSLPNAKFVSFLKADF 166
R L CGTG + +A VVGL++ + +A +KA+E N K + FL+ D
Sbjct: 44 RVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE-----RNLK-IEFLQGDV 97
Query: 167 FTWCPTELFDLIFDYTFFCAI----EPEMRAAWAQKIKDFLKPDGELIT 211
FD + FF I E ++R ++ K+ + LKP G IT
Sbjct: 98 LEIAFKNEFDAV--TMFFSTIMYFDEEDLRKLFS-KVAEALKPGGVFIT 143
>pdb|3OU2|A Chain A, Dhpi-Sah Complex Structure
pdb|3OU6|A Chain A, Dhpi-Sam Complex
pdb|3OU6|B Chain B, Dhpi-Sam Complex
pdb|3OU6|C Chain C, Dhpi-Sam Complex
pdb|3OU6|D Chain D, Dhpi-Sam Complex
pdb|3OU7|A Chain A, Dhpi-Sam-Hep Complex
pdb|3OU7|B Chain B, Dhpi-Sam-Hep Complex
pdb|3OU7|C Chain C, Dhpi-Sam-Hep Complex
pdb|3OU7|D Chain D, Dhpi-Sam-Hep Complex
Length = 218
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP 154
AP + ++G + +G L GTGY ++ V L+ S I AE L
Sbjct: 34 APAALERLRAGNI-RGDVLELASGTGYWTRHLSGLADRVTALDGSAEMI--AEAGRHGLD 90
Query: 155 NAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214
N V F + D F W P +D +F + + + A+ + ++ + P G +
Sbjct: 91 N---VEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGG--VVEFV 145
Query: 215 PISDH 219
++DH
Sbjct: 146 DVTDH 150
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168
+G+ L CG G + VVG++IS+ I+KA E + S + V F+ D
Sbjct: 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDXIRKAREYAKSRESN--VEFIVGD--- 93
Query: 169 WCPTELFDLIFDYTFF----CAIEPEMRAAWAQKIKDFLKPDGELI 210
D FDY F EP ++++ LKP G+ I
Sbjct: 94 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139
>pdb|3MER|A Chain A, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|3MER|B Chain B, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|2KW5|A Chain A, Solution Nmr Structure Of The Slr1183 Protein From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
Length = 202
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 20/127 (15%)
Query: 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166
+P+G+ L G G + +AS V ++ S + + KA++L+ K
Sbjct: 28 IPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQE----------KGVK 77
Query: 167 FTWCPTEL--FDLIFD-----YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP---I 216
T + L FD++ D + FC + +R K+ LKP G I F +
Sbjct: 78 ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL 137
Query: 217 SDHVGGP 223
+ GGP
Sbjct: 138 QYNTGGP 144
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 116 GCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL- 174
GCG+G + +AS V G++I+ AI+ AE + S P + KA+F + L
Sbjct: 38 GCGSGKISLELASKGYSVTGIDINSEAIRLAETAARS-PGLNQKTGGKAEFKVENASSLS 96
Query: 175 -----FDLIFDYTFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMF 214
FD F ++ +P+ R+ +++ LKP L + F
Sbjct: 97 FHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 29/138 (21%)
Query: 108 PKGRALVPGCGTGYDVVAMA-------SPERYVVGLE-ISDIAIKKAEELSSSLPNAKFV 159
P RA+ G G+GY V MA + YV+GLE + D+ E + P
Sbjct: 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKP----- 134
Query: 160 SFLKADFFTWCPTELFDL---------IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
LK D F ++ + +FD A E+ D L +G+LI
Sbjct: 135 ELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILV----DLLAENGKLI 190
Query: 211 TLMFPISDHVGGPPYKVS 228
PI + Y+++
Sbjct: 191 ---IPIEEDYTQVLYEIT 205
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKA 146
GCG GY A A PE GL++S +AIK A
Sbjct: 93 GCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 125
>pdb|3I9F|A Chain A, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
pdb|3I9F|B Chain B, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
Length = 170
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168
KG + GCG G+ + + ++I+ IA+K+ +E KF S +
Sbjct: 18 KGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKE--------KFDSVITLS--- 66
Query: 169 WCPTELFDLIFDYTFFCAIEPEM--RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK 226
P E+ D D+ F +M + ++K LK DG +I + + + GPP
Sbjct: 67 -DPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLS 125
Query: 227 VSVSE 231
+ + E
Sbjct: 126 IRMDE 130
>pdb|2IBS|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
The Target Position
pdb|2IBS|D Chain D, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
The Target Position
pdb|2IBT|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 2- Aminopurine At
The Target Position And An Abasic Site Analog At The
Target Base Partner Position
pdb|2IBT|D Chain D, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 2- Aminopurine At
The Target Position And An Abasic Site Analog At The
Target Base Partner Position
pdb|2JG3|A Chain A, Mtaqi With Baz
pdb|2JG3|D Chain D, Mtaqi With Baz
pdb|2IH2|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 5-
Methylpyrimidin-2(1h)-One At The Target Base Partner
Position
pdb|2IH2|D Chain D, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 5-
Methylpyrimidin-2(1h)-One At The Target Base Partner
Position
pdb|2IH4|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The
Target Base Partner Position
pdb|2IH4|D Chain D, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The
Target Base Partner Position
pdb|2IH5|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing An Abasic Site
Analog At The Target Base Partner Position
pdb|2NP6|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing An Abasic Site
Analog At The Target Position
pdb|2NP6|D Chain D, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing An Abasic Site
Analog At The Target Position
pdb|2NP7|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing An Abasic Site
Analog At The Target Position And Pyrrolo-Dc At The
Target Base Partner Position
Length = 421
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 110 GRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165
GR L P C G + A + R+V G+EI A+ LP + + AD
Sbjct: 41 GRVLEPACAHGPFLRAFREAHGTAYRFV-GVEIDPKAL--------DLP--PWAEGILAD 89
Query: 166 FFTWCPTELFDLIF 179
F W P E FDLI
Sbjct: 90 FLLWEPGEAFDLIL 103
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 114 VPGCGTGYDV--VAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW- 169
V CG G D+ +++ + Y G+EISD+ +KKAE S N ++ K D
Sbjct: 27 VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRE--NNFKLNISKGDIRKLP 84
Query: 170 CPTELFDLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDG 207
E ++ Y T F + +++ A + IK LKP G
Sbjct: 85 FKDESXSFVYSYGTIFHXRKNDVKEAIDE-IKRVLKPGG 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,211,769
Number of Sequences: 62578
Number of extensions: 307937
Number of successful extensions: 899
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 21
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)