Query 026870
Match_columns 231
No_of_seqs 178 out of 2765
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 13:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13256 thiopurine S-methyltr 99.9 9.7E-26 2.1E-30 176.4 14.8 159 73-231 7-181 (226)
2 TIGR03840 TMPT_Se_Te thiopurin 99.9 3.9E-25 8.5E-30 173.0 16.0 156 76-231 1-171 (213)
3 PRK13255 thiopurine S-methyltr 99.9 3.8E-24 8.3E-29 168.0 15.9 157 75-231 3-174 (218)
4 PF05724 TPMT: Thiopurine S-me 99.9 8E-25 1.7E-29 171.5 9.4 156 75-231 3-174 (218)
5 PRK11207 tellurite resistance 99.9 1.2E-21 2.6E-26 152.2 14.4 138 91-231 15-155 (197)
6 PF12847 Methyltransf_18: Meth 99.8 2.4E-20 5.2E-25 131.9 12.7 106 108-213 1-111 (112)
7 PF03848 TehB: Tellurite resis 99.8 6.4E-20 1.4E-24 139.9 13.2 132 75-217 6-137 (192)
8 TIGR00477 tehB tellurite resis 99.8 1.6E-19 3.6E-24 140.0 15.2 117 95-215 19-135 (195)
9 COG2226 UbiE Methylase involve 99.8 9.6E-20 2.1E-24 143.3 12.9 108 108-218 51-161 (238)
10 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.3E-20 5.1E-25 144.5 7.9 150 55-216 9-164 (243)
11 PLN02244 tocopherol O-methyltr 99.8 2.4E-18 5.1E-23 144.2 18.1 107 108-216 118-226 (340)
12 PF01209 Ubie_methyltran: ubiE 99.8 1.2E-19 2.6E-24 143.9 9.7 110 106-218 45-158 (233)
13 PRK11036 putative S-adenosyl-L 99.8 6.4E-19 1.4E-23 142.3 11.6 117 98-216 34-152 (255)
14 PF08241 Methyltransf_11: Meth 99.8 8.6E-19 1.9E-23 119.8 10.4 93 113-211 1-95 (95)
15 PLN02396 hexaprenyldihydroxybe 99.8 5.2E-19 1.1E-23 146.1 10.7 107 108-216 131-238 (322)
16 PRK12335 tellurite resistance 99.8 4.7E-18 1E-22 139.5 15.6 116 95-214 109-224 (287)
17 PTZ00098 phosphoethanolamine N 99.8 6.7E-18 1.4E-22 136.7 15.3 137 75-217 21-160 (263)
18 PF05401 NodS: Nodulation prot 99.8 2.6E-18 5.7E-23 129.7 11.5 128 85-215 15-148 (201)
19 KOG1270 Methyltransferases [Co 99.8 1.2E-18 2.5E-23 136.1 9.7 103 110-216 91-198 (282)
20 PRK15451 tRNA cmo(5)U34 methyl 99.8 5.4E-18 1.2E-22 136.2 13.6 113 101-214 49-165 (247)
21 PF13847 Methyltransf_31: Meth 99.8 3.9E-18 8.5E-23 127.2 11.6 105 108-215 3-112 (152)
22 PLN02233 ubiquinone biosynthes 99.8 1.3E-17 2.9E-22 134.9 13.0 110 107-218 72-187 (261)
23 TIGR00740 methyltransferase, p 99.8 2.6E-17 5.5E-22 131.8 14.2 109 107-216 52-164 (239)
24 PF13649 Methyltransf_25: Meth 99.7 6.1E-18 1.3E-22 117.4 7.5 94 112-207 1-101 (101)
25 PLN02336 phosphoethanolamine N 99.7 7.3E-17 1.6E-21 141.4 15.2 158 53-217 208-373 (475)
26 PF02353 CMAS: Mycolic acid cy 99.7 3.3E-17 7.1E-22 132.8 11.9 117 98-216 51-169 (273)
27 TIGR03587 Pse_Me-ase pseudamin 99.7 6E-17 1.3E-21 126.2 12.4 101 108-216 43-145 (204)
28 TIGR00452 methyltransferase, p 99.7 3.2E-16 6.9E-21 129.1 15.7 117 100-218 112-230 (314)
29 COG2230 Cfa Cyclopropane fatty 99.7 1.4E-16 3E-21 127.7 12.9 144 72-218 36-181 (283)
30 PRK14103 trans-aconitate 2-met 99.7 6.4E-17 1.4E-21 130.7 10.8 106 99-214 19-127 (255)
31 PRK15068 tRNA mo(5)U34 methylt 99.7 2.1E-16 4.5E-21 131.4 12.9 110 106-217 120-230 (322)
32 PRK10258 biotin biosynthesis p 99.7 2.3E-16 4.9E-21 127.2 12.6 102 108-217 42-144 (251)
33 TIGR02752 MenG_heptapren 2-hep 99.7 6.3E-16 1.4E-20 123.1 13.9 115 99-216 35-154 (231)
34 PRK01683 trans-aconitate 2-met 99.7 3E-16 6.6E-21 127.0 12.0 107 99-213 21-130 (258)
35 PF05175 MTS: Methyltransferas 99.7 8.8E-16 1.9E-20 116.5 13.0 106 108-214 31-141 (170)
36 smart00828 PKS_MT Methyltransf 99.7 3E-16 6.5E-21 124.4 10.7 105 110-216 1-107 (224)
37 COG4106 Tam Trans-aconitate me 99.7 1.1E-16 2.3E-21 121.6 7.6 99 107-213 29-129 (257)
38 PF08003 Methyltransf_9: Prote 99.7 6.3E-16 1.4E-20 124.1 11.2 110 106-219 113-225 (315)
39 TIGR00138 gidB 16S rRNA methyl 99.7 9E-16 2E-20 117.4 11.6 100 107-213 41-142 (181)
40 PF08242 Methyltransf_12: Meth 99.7 5.5E-18 1.2E-22 117.2 -0.7 95 113-209 1-99 (99)
41 smart00138 MeTrc Methyltransfe 99.7 3.8E-16 8.3E-21 126.4 9.8 104 109-212 100-241 (264)
42 KOG1540 Ubiquinone biosynthesi 99.7 1.7E-15 3.7E-20 117.8 12.9 110 107-218 99-219 (296)
43 PF13489 Methyltransf_23: Meth 99.7 7.6E-16 1.6E-20 115.5 10.5 97 107-216 21-118 (161)
44 TIGR02716 C20_methyl_CrtF C-20 99.7 2.5E-15 5.5E-20 124.5 14.2 110 108-219 149-260 (306)
45 PRK00107 gidB 16S rRNA methylt 99.7 1.3E-15 2.8E-20 116.8 11.4 101 109-216 46-148 (187)
46 PLN03075 nicotianamine synthas 99.7 1.1E-15 2.5E-20 123.7 11.6 138 75-213 79-233 (296)
47 PRK11873 arsM arsenite S-adeno 99.6 2.1E-15 4.5E-20 123.0 12.3 108 107-217 76-187 (272)
48 TIGR02021 BchM-ChlM magnesium 99.6 3.2E-15 7E-20 118.1 13.0 102 108-211 55-156 (219)
49 PRK11705 cyclopropane fatty ac 99.6 3.9E-15 8.4E-20 126.4 14.3 111 101-217 159-271 (383)
50 PLN02585 magnesium protoporphy 99.6 6.7E-15 1.5E-19 121.4 14.6 101 107-210 143-247 (315)
51 KOG2361 Predicted methyltransf 99.6 1.3E-15 2.9E-20 117.6 9.6 143 72-218 33-188 (264)
52 PRK11088 rrmA 23S rRNA methylt 99.6 7.6E-15 1.7E-19 119.6 14.4 158 28-216 17-184 (272)
53 PRK15001 SAM-dependent 23S rib 99.6 1.2E-14 2.6E-19 122.4 15.5 105 109-213 229-340 (378)
54 PRK07580 Mg-protoporphyrin IX 99.6 7.4E-15 1.6E-19 116.8 13.5 144 64-209 11-162 (230)
55 PLN02490 MPBQ/MSBQ methyltrans 99.6 4.4E-15 9.4E-20 123.3 12.1 100 108-213 113-215 (340)
56 PLN02336 phosphoethanolamine N 99.6 6.1E-15 1.3E-19 129.2 13.6 106 108-216 37-145 (475)
57 TIGR00537 hemK_rel_arch HemK-r 99.6 9.8E-15 2.1E-19 111.8 12.7 108 107-217 18-144 (179)
58 PF13659 Methyltransf_26: Meth 99.6 2.6E-15 5.7E-20 106.8 8.7 104 110-213 2-115 (117)
59 TIGR02072 BioC biotin biosynth 99.6 7.2E-15 1.6E-19 117.2 12.1 102 108-216 34-138 (240)
60 TIGR00406 prmA ribosomal prote 99.6 1.2E-14 2.6E-19 119.3 13.0 111 100-216 151-262 (288)
61 PRK13944 protein-L-isoaspartat 99.6 1.7E-14 3.7E-19 112.8 13.2 107 99-213 62-173 (205)
62 PRK00121 trmB tRNA (guanine-N( 99.6 5.1E-15 1.1E-19 115.4 10.2 105 108-213 40-156 (202)
63 PRK05785 hypothetical protein; 99.6 8.5E-15 1.9E-19 116.0 11.5 95 108-215 51-147 (226)
64 PRK06922 hypothetical protein; 99.6 9.7E-15 2.1E-19 128.6 12.8 107 107-215 417-539 (677)
65 TIGR03533 L3_gln_methyl protei 99.6 2.7E-14 5.9E-19 116.8 14.5 105 109-213 122-251 (284)
66 KOG1271 Methyltransferases [Ge 99.6 4.3E-15 9.4E-20 110.0 8.6 139 75-213 18-181 (227)
67 PRK00216 ubiE ubiquinone/menaq 99.6 1.7E-14 3.7E-19 115.1 12.0 108 108-217 51-162 (239)
68 PRK05134 bifunctional 3-demeth 99.6 2.3E-14 5E-19 114.2 12.1 105 107-215 47-153 (233)
69 PRK06202 hypothetical protein; 99.6 2.2E-14 4.9E-19 114.3 11.4 104 108-217 60-170 (232)
70 TIGR02469 CbiT precorrin-6Y C5 99.6 6.9E-14 1.5E-18 100.3 12.8 101 108-214 19-123 (124)
71 TIGR00536 hemK_fam HemK family 99.6 6.3E-14 1.4E-18 114.9 14.0 104 110-213 116-244 (284)
72 COG2264 PrmA Ribosomal protein 99.6 2.2E-14 4.7E-19 116.0 10.9 112 98-214 152-264 (300)
73 PRK08317 hypothetical protein; 99.6 6.1E-14 1.3E-18 111.8 13.3 105 107-215 18-126 (241)
74 PF06325 PrmA: Ribosomal prote 99.6 2.2E-14 4.7E-19 117.0 10.1 111 98-216 151-262 (295)
75 COG2518 Pcm Protein-L-isoaspar 99.6 5.8E-14 1.2E-18 107.6 11.7 108 98-214 61-170 (209)
76 PRK14967 putative methyltransf 99.6 1.1E-13 2.3E-18 109.7 13.7 115 97-213 24-159 (223)
77 TIGR00080 pimt protein-L-isoas 99.6 5.6E-14 1.2E-18 110.7 12.0 106 99-213 67-177 (215)
78 PRK00517 prmA ribosomal protei 99.6 4.2E-14 9E-19 113.9 11.4 104 101-216 112-216 (250)
79 PRK11805 N5-glutamine S-adenos 99.6 1.9E-13 4.1E-18 112.9 15.5 103 110-212 135-262 (307)
80 PRK00312 pcm protein-L-isoaspa 99.6 1.2E-13 2.6E-18 108.6 13.7 129 77-214 43-176 (212)
81 PRK13942 protein-L-isoaspartat 99.6 1E-13 2.3E-18 108.8 13.2 106 99-213 66-176 (212)
82 PRK01544 bifunctional N5-gluta 99.6 8.1E-14 1.8E-18 122.3 13.8 165 47-212 39-268 (506)
83 KOG4300 Predicted methyltransf 99.6 3E-14 6.5E-19 107.6 9.5 106 110-218 78-187 (252)
84 PRK09489 rsmC 16S ribosomal RN 99.5 1.8E-13 3.9E-18 114.5 14.9 103 109-214 197-304 (342)
85 PRK14968 putative methyltransf 99.5 1.4E-13 2.9E-18 106.0 13.2 109 107-215 22-150 (188)
86 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 8.6E-14 1.9E-18 109.9 12.3 104 108-216 39-146 (223)
87 TIGR00091 tRNA (guanine-N(7)-) 99.5 3.4E-14 7.4E-19 110.1 9.6 104 109-213 17-132 (194)
88 COG4123 Predicted O-methyltran 99.5 4.8E-14 1E-18 111.2 10.3 107 109-215 45-172 (248)
89 PRK08287 cobalt-precorrin-6Y C 99.5 8.5E-14 1.8E-18 107.3 11.5 100 107-213 30-131 (187)
90 PRK14966 unknown domain/N5-glu 99.5 3E-13 6.5E-18 114.3 15.3 163 46-211 177-379 (423)
91 TIGR03534 RF_mod_PrmC protein- 99.5 2.5E-13 5.4E-18 109.3 14.1 115 98-213 77-217 (251)
92 PRK09328 N5-glutamine S-adenos 99.5 5.7E-13 1.2E-17 108.8 16.2 105 107-212 107-237 (275)
93 TIGR03438 probable methyltrans 99.5 1.7E-13 3.7E-18 113.1 13.1 106 108-213 63-177 (301)
94 PF00891 Methyltransf_2: O-met 99.5 8.4E-14 1.8E-18 111.6 10.8 105 110-224 102-210 (241)
95 PRK00377 cbiT cobalt-precorrin 99.5 7.9E-13 1.7E-17 102.8 12.9 101 107-212 39-144 (198)
96 COG2813 RsmC 16S RNA G1207 met 99.5 1.2E-12 2.7E-17 105.4 13.9 121 92-214 141-267 (300)
97 TIGR01983 UbiG ubiquinone bios 99.5 4E-13 8.6E-18 106.4 10.9 105 108-215 45-151 (224)
98 PRK14121 tRNA (guanine-N(7)-)- 99.5 8.2E-13 1.8E-17 111.0 12.9 105 108-213 122-235 (390)
99 TIGR01177 conserved hypothetic 99.5 1.2E-12 2.5E-17 109.6 13.5 106 107-213 181-294 (329)
100 PRK11188 rrmJ 23S rRNA methylt 99.5 7.7E-13 1.7E-17 103.6 11.1 99 107-217 50-169 (209)
101 PRK04266 fibrillarin; Provisio 99.5 1.2E-12 2.6E-17 103.4 12.2 99 107-212 71-175 (226)
102 cd02440 AdoMet_MTases S-adenos 99.4 2.5E-12 5.5E-17 88.3 12.1 100 111-212 1-103 (107)
103 PF05891 Methyltransf_PK: AdoM 99.4 9.9E-13 2.1E-17 101.3 10.9 106 110-216 57-164 (218)
104 PF01739 CheR: CheR methyltran 99.4 3.2E-13 7E-18 104.1 7.3 104 108-211 31-173 (196)
105 PHA03411 putative methyltransf 99.4 1.8E-12 3.8E-17 103.9 11.6 112 94-212 51-182 (279)
106 PF07021 MetW: Methionine bios 99.4 7.4E-13 1.6E-17 100.1 8.9 97 106-216 11-111 (193)
107 PLN02781 Probable caffeoyl-CoA 99.4 1.3E-12 2.9E-17 104.0 10.9 102 107-213 67-178 (234)
108 PRK04457 spermidine synthase; 99.4 1.8E-12 3.8E-17 104.9 11.7 109 108-216 66-180 (262)
109 PF03291 Pox_MCEL: mRNA cappin 99.4 1.3E-12 2.8E-17 108.6 10.9 110 108-217 62-190 (331)
110 PF01135 PCMT: Protein-L-isoas 99.4 7.5E-13 1.6E-17 103.2 8.4 108 98-214 61-173 (209)
111 KOG1541 Predicted protein carb 99.4 2.4E-12 5.3E-17 98.3 10.9 105 109-219 51-166 (270)
112 COG2242 CobL Precorrin-6B meth 99.4 5.7E-12 1.2E-16 94.7 12.6 101 106-213 32-135 (187)
113 PRK07402 precorrin-6B methylas 99.4 2.7E-12 5.9E-17 99.6 10.8 102 108-216 40-145 (196)
114 COG2890 HemK Methylase of poly 99.4 5.9E-12 1.3E-16 102.6 12.8 157 53-212 43-237 (280)
115 PTZ00146 fibrillarin; Provisio 99.4 6.9E-12 1.5E-16 101.5 12.3 99 107-212 131-236 (293)
116 TIGR03704 PrmC_rel_meth putati 99.4 6E-12 1.3E-16 101.2 11.9 100 110-213 88-216 (251)
117 PRK00811 spermidine synthase; 99.4 7.7E-12 1.7E-16 102.3 12.4 106 107-212 75-190 (283)
118 PRK15128 23S rRNA m(5)C1962 me 99.4 6.3E-12 1.4E-16 107.1 11.5 107 108-214 220-340 (396)
119 TIGR02081 metW methionine bios 99.4 4.1E-12 8.8E-17 98.5 9.3 88 108-205 13-104 (194)
120 PLN02476 O-methyltransferase 99.3 2.5E-11 5.4E-16 98.1 13.2 103 107-214 117-229 (278)
121 KOG3010 Methyltransferase [Gen 99.3 4.2E-12 9.1E-17 98.4 8.0 118 94-215 20-139 (261)
122 PRK13943 protein-L-isoaspartat 99.3 1.5E-11 3.2E-16 101.9 11.9 106 99-213 70-180 (322)
123 PRK10611 chemotaxis methyltran 99.3 4.4E-12 9.6E-17 103.1 8.6 107 109-216 116-264 (287)
124 COG4122 Predicted O-methyltran 99.3 2.5E-11 5.4E-16 94.5 11.7 107 107-218 58-171 (219)
125 TIGR00438 rrmJ cell division p 99.3 1.5E-11 3.2E-16 94.9 10.3 107 98-216 20-149 (188)
126 smart00650 rADc Ribosomal RNA 99.3 2.4E-11 5.2E-16 92.1 11.2 106 100-211 4-111 (169)
127 PRK11783 rlmL 23S rRNA m(2)G24 99.3 7.7E-12 1.7E-16 114.1 10.1 107 108-214 538-657 (702)
128 PF01596 Methyltransf_3: O-met 99.3 9.3E-12 2E-16 96.8 8.8 103 107-214 44-156 (205)
129 PRK14904 16S rRNA methyltransf 99.3 2.8E-11 6.1E-16 105.1 12.8 110 107-217 249-381 (445)
130 PF02390 Methyltransf_4: Putat 99.3 1.8E-11 3.8E-16 94.7 9.6 103 110-213 19-133 (195)
131 PRK10909 rsmD 16S rRNA m(2)G96 99.3 4.4E-11 9.6E-16 92.6 11.8 106 107-216 52-162 (199)
132 COG1352 CheR Methylase of chem 99.3 4.1E-11 9E-16 96.3 11.0 103 109-211 97-239 (268)
133 PRK10901 16S rRNA methyltransf 99.3 7.8E-11 1.7E-15 101.9 13.2 108 106-215 242-374 (427)
134 KOG2899 Predicted methyltransf 99.3 5.7E-11 1.2E-15 92.1 10.8 131 76-211 30-207 (288)
135 TIGR00563 rsmB ribosomal RNA s 99.3 6.4E-11 1.4E-15 102.4 12.4 112 106-217 236-372 (426)
136 KOG1975 mRNA cap methyltransfe 99.3 2E-11 4.3E-16 98.3 8.1 120 94-213 102-237 (389)
137 PHA03412 putative methyltransf 99.3 1.2E-10 2.6E-15 91.4 12.1 97 108-211 49-160 (241)
138 PLN02232 ubiquinone biosynthes 99.3 3.5E-11 7.5E-16 90.4 8.8 82 134-217 1-85 (160)
139 PRK03522 rumB 23S rRNA methylu 99.3 7.8E-11 1.7E-15 98.0 11.7 105 107-217 172-278 (315)
140 PLN02589 caffeoyl-CoA O-methyl 99.3 5.1E-11 1.1E-15 95.1 10.1 101 107-212 78-189 (247)
141 PLN02366 spermidine synthase 99.2 1.3E-10 2.9E-15 95.7 12.7 105 107-211 90-204 (308)
142 COG2519 GCD14 tRNA(1-methylade 99.2 1.1E-10 2.3E-15 91.7 11.2 100 106-212 92-194 (256)
143 PRK14903 16S rRNA methyltransf 99.2 1.2E-10 2.7E-15 100.5 12.3 111 106-217 235-370 (431)
144 PF10294 Methyltransf_16: Puta 99.2 5.8E-11 1.3E-15 90.3 9.1 105 106-213 43-156 (173)
145 PLN02672 methionine S-methyltr 99.2 9.5E-11 2.1E-15 109.5 12.3 123 90-212 94-277 (1082)
146 TIGR00417 speE spermidine synt 99.2 1.3E-10 2.9E-15 94.5 11.5 105 108-212 72-185 (270)
147 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.8E-10 3.9E-15 93.5 11.4 111 106-217 69-203 (264)
148 PRK14901 16S rRNA methyltransf 99.2 2.1E-10 4.6E-15 99.4 12.3 109 107-216 251-387 (434)
149 PRK01581 speE spermidine synth 99.2 2.4E-10 5.2E-15 95.1 11.9 107 106-212 148-267 (374)
150 COG0220 Predicted S-adenosylme 99.2 1.2E-10 2.6E-15 91.7 9.6 103 110-213 50-164 (227)
151 PRK13168 rumA 23S rRNA m(5)U19 99.2 2E-10 4.3E-15 99.9 11.8 102 108-216 297-403 (443)
152 KOG1499 Protein arginine N-met 99.2 7.2E-11 1.6E-15 96.5 8.4 104 106-210 58-164 (346)
153 PRK14902 16S rRNA methyltransf 99.2 2.7E-10 5.8E-15 99.1 12.3 108 107-215 249-381 (444)
154 TIGR00095 RNA methyltransferas 99.2 4.6E-10 9.9E-15 86.5 12.0 106 107-216 48-161 (189)
155 TIGR02085 meth_trns_rumB 23S r 99.2 1.5E-10 3.3E-15 98.3 10.2 103 107-215 232-336 (374)
156 PF06080 DUF938: Protein of un 99.2 2.6E-10 5.7E-15 87.5 10.3 103 111-213 28-141 (204)
157 KOG2904 Predicted methyltransf 99.2 1.3E-09 2.9E-14 86.1 14.1 106 107-212 147-284 (328)
158 COG4976 Predicted methyltransf 99.2 9.3E-12 2E-16 95.7 1.6 113 97-217 113-229 (287)
159 PF05185 PRMT5: PRMT5 arginine 99.1 2.2E-10 4.7E-15 99.0 9.4 102 109-210 187-294 (448)
160 COG2263 Predicted RNA methylas 99.1 4.5E-10 9.8E-15 84.3 9.8 77 105-185 42-119 (198)
161 COG1041 Predicted DNA modifica 99.1 9.8E-10 2.1E-14 90.4 12.5 122 92-214 179-311 (347)
162 PRK03612 spermidine synthase; 99.1 3.3E-10 7.1E-15 100.2 10.2 106 108-213 297-415 (521)
163 COG3963 Phospholipid N-methylt 99.1 2E-09 4.4E-14 79.0 12.3 115 98-218 37-161 (194)
164 PF02475 Met_10: Met-10+ like- 99.1 4E-10 8.6E-15 87.1 9.0 106 98-210 92-199 (200)
165 PRK11727 23S rRNA mA1618 methy 99.1 9.3E-10 2E-14 90.9 10.7 79 109-187 115-202 (321)
166 PF03602 Cons_hypoth95: Conser 99.1 3E-10 6.4E-15 86.9 7.1 108 107-216 41-156 (183)
167 COG1092 Predicted SAM-dependen 99.1 7.8E-10 1.7E-14 93.4 10.1 107 108-214 217-337 (393)
168 PF08704 GCD14: tRNA methyltra 99.1 4.1E-10 8.9E-15 89.7 8.0 108 98-212 29-145 (247)
169 KOG1500 Protein arginine N-met 99.1 1.1E-09 2.4E-14 88.8 10.4 103 106-210 175-279 (517)
170 PRK04148 hypothetical protein; 99.1 5.4E-09 1.2E-13 75.1 12.2 96 108-218 16-114 (134)
171 KOG3178 Hydroxyindole-O-methyl 99.1 1.5E-09 3.3E-14 88.9 10.3 100 110-216 179-278 (342)
172 PF12147 Methyltransf_20: Puta 99.0 4.4E-09 9.5E-14 84.2 12.2 110 108-217 135-255 (311)
173 TIGR00479 rumA 23S rRNA (uraci 99.0 2.2E-09 4.7E-14 93.2 10.8 101 108-214 292-397 (431)
174 PF10672 Methyltrans_SAM: S-ad 99.0 7.9E-10 1.7E-14 89.9 7.3 110 107-216 122-241 (286)
175 COG2520 Predicted methyltransf 99.0 3.7E-09 8.1E-14 87.5 10.5 114 99-219 180-295 (341)
176 PF05148 Methyltransf_8: Hypot 99.0 1.2E-09 2.6E-14 83.6 6.7 116 79-216 45-161 (219)
177 PF09445 Methyltransf_15: RNA 99.0 4.6E-10 1E-14 83.6 4.3 72 111-182 2-77 (163)
178 KOG1663 O-methyltransferase [S 99.0 4.2E-08 9E-13 76.0 14.5 111 96-213 63-183 (237)
179 TIGR02143 trmA_only tRNA (urac 99.0 1.2E-09 2.7E-14 92.1 6.7 100 109-216 198-314 (353)
180 PTZ00338 dimethyladenosine tra 99.0 4.5E-09 9.9E-14 86.3 9.6 90 95-185 22-112 (294)
181 PF01170 UPF0020: Putative RNA 99.0 1.2E-08 2.5E-13 78.1 11.2 117 94-210 12-148 (179)
182 TIGR00755 ksgA dimethyladenosi 98.9 2.2E-08 4.7E-13 80.9 12.9 110 95-215 15-128 (253)
183 PLN02823 spermine synthase 98.9 1.3E-08 2.8E-13 84.9 11.7 104 108-211 103-218 (336)
184 PRK05031 tRNA (uracil-5-)-meth 98.9 2.6E-09 5.6E-14 90.5 7.5 98 110-215 208-322 (362)
185 KOG3045 Predicted RNA methylas 98.9 4E-09 8.7E-14 82.7 7.8 113 80-216 154-267 (325)
186 PRK14896 ksgA 16S ribosomal RN 98.9 9.7E-09 2.1E-13 83.1 10.4 87 95-185 15-102 (258)
187 KOG2730 Methylase [General fun 98.9 8.6E-10 1.9E-14 84.4 3.8 120 86-207 70-196 (263)
188 PF05219 DREV: DREV methyltran 98.9 7.4E-09 1.6E-13 81.9 8.8 94 109-213 95-188 (265)
189 PRK00274 ksgA 16S ribosomal RN 98.9 2.5E-08 5.4E-13 81.3 12.1 86 95-184 28-115 (272)
190 KOG3191 Predicted N6-DNA-methy 98.9 1.6E-08 3.5E-13 75.3 9.8 108 109-218 44-173 (209)
191 KOG1661 Protein-L-isoaspartate 98.9 1.1E-08 2.5E-13 77.9 9.0 106 100-213 74-193 (237)
192 COG0742 N6-adenine-specific me 98.9 4.9E-08 1.1E-12 74.0 11.5 107 107-213 42-154 (187)
193 PRK01544 bifunctional N5-gluta 98.8 1.4E-08 3E-13 89.6 9.2 104 109-213 348-462 (506)
194 PRK00050 16S rRNA m(4)C1402 me 98.8 3.6E-08 7.8E-13 80.6 10.6 81 98-181 8-97 (296)
195 COG2521 Predicted archaeal met 98.8 9E-09 1.9E-13 79.7 6.6 109 108-216 134-248 (287)
196 KOG2940 Predicted methyltransf 98.8 2.6E-09 5.7E-14 82.4 3.0 103 110-217 74-178 (325)
197 PF07942 N2227: N2227-like pro 98.8 4.2E-08 9.1E-13 78.9 9.1 100 109-210 57-199 (270)
198 PRK04338 N(2),N(2)-dimethylgua 98.8 1.8E-08 4E-13 85.6 7.4 97 109-212 58-157 (382)
199 COG2265 TrmA SAM-dependent met 98.8 3.8E-08 8.2E-13 84.7 9.4 103 108-216 293-399 (432)
200 KOG3420 Predicted RNA methylas 98.8 1.5E-08 3.3E-13 72.7 5.2 78 106-185 46-125 (185)
201 PRK00536 speE spermidine synth 98.7 7.2E-08 1.6E-12 77.5 9.4 97 106-211 70-169 (262)
202 PF01564 Spermine_synth: Sperm 98.7 5.6E-08 1.2E-12 78.0 8.2 109 107-215 75-193 (246)
203 COG0421 SpeE Spermidine syntha 98.7 1.4E-07 3E-12 76.8 10.5 102 110-212 78-189 (282)
204 PF02527 GidB: rRNA small subu 98.7 5E-08 1.1E-12 74.6 7.3 95 111-212 51-147 (184)
205 TIGR00478 tly hemolysin TlyA f 98.7 1.3E-07 2.8E-12 74.7 9.8 100 96-213 61-171 (228)
206 COG0030 KsgA Dimethyladenosine 98.7 2.4E-07 5.3E-12 74.0 11.0 93 95-191 16-111 (259)
207 KOG0820 Ribosomal RNA adenine 98.6 2.9E-07 6.3E-12 73.0 10.0 87 96-183 45-132 (315)
208 KOG1331 Predicted methyltransf 98.6 8.6E-08 1.9E-12 76.6 6.5 114 95-218 33-148 (293)
209 TIGR03439 methyl_EasF probable 98.6 5.3E-07 1.1E-11 74.7 11.5 103 108-211 76-195 (319)
210 KOG2915 tRNA(1-methyladenosine 98.6 3.4E-07 7.4E-12 72.6 9.7 110 98-215 94-210 (314)
211 TIGR00308 TRM1 tRNA(guanine-26 98.6 9.9E-08 2.1E-12 80.8 6.7 97 110-213 46-147 (374)
212 PF09243 Rsm22: Mitochondrial 98.6 5.4E-07 1.2E-11 73.5 10.3 107 107-215 32-141 (274)
213 PF03141 Methyltransf_29: Puta 98.6 7.2E-08 1.6E-12 82.7 4.5 102 110-217 119-223 (506)
214 PRK11783 rlmL 23S rRNA m(2)G24 98.6 8.4E-07 1.8E-11 81.4 11.8 107 108-214 190-348 (702)
215 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 3.8E-07 8.2E-12 73.0 8.4 110 106-215 54-201 (256)
216 PF01728 FtsJ: FtsJ-like methy 98.5 2.6E-07 5.6E-12 70.7 6.9 108 98-217 9-143 (181)
217 PF06962 rRNA_methylase: Putat 98.5 3.4E-07 7.3E-12 66.3 7.0 83 132-216 1-95 (140)
218 COG0116 Predicted N6-adenine-s 98.5 1.3E-06 2.9E-11 73.1 11.3 109 106-214 189-345 (381)
219 PF08123 DOT1: Histone methyla 98.5 4.9E-07 1.1E-11 70.4 8.1 114 95-211 28-156 (205)
220 COG3897 Predicted methyltransf 98.5 6.8E-07 1.5E-11 67.6 8.4 119 76-211 55-176 (218)
221 PF05958 tRNA_U5-meth_tr: tRNA 98.5 4E-07 8.6E-12 76.9 8.1 62 106-168 194-255 (352)
222 KOG1269 SAM-dependent methyltr 98.5 1.2E-07 2.5E-12 79.8 4.7 110 106-217 108-219 (364)
223 PF02384 N6_Mtase: N-6 DNA Met 98.5 5.7E-07 1.2E-11 74.8 8.8 106 108-213 46-183 (311)
224 COG0500 SmtA SAM-dependent met 98.5 5.3E-06 1.1E-10 60.9 12.9 103 112-218 52-160 (257)
225 COG0357 GidB Predicted S-adeno 98.5 4.9E-07 1.1E-11 70.4 7.3 97 109-212 68-167 (215)
226 PRK11933 yebU rRNA (cytosine-C 98.5 2E-06 4.3E-11 75.0 11.4 109 106-215 111-244 (470)
227 PF13679 Methyltransf_32: Meth 98.4 1.4E-06 3.1E-11 63.9 8.3 91 107-201 24-122 (141)
228 PF03059 NAS: Nicotianamine sy 98.4 7.5E-07 1.6E-11 72.0 6.8 103 109-212 121-229 (276)
229 COG0293 FtsJ 23S rRNA methylas 98.4 3.7E-06 8.1E-11 64.7 9.9 110 97-218 32-164 (205)
230 PF11968 DUF3321: Putative met 98.4 2E-06 4.4E-11 66.4 8.3 102 95-213 32-149 (219)
231 KOG2352 Predicted spermine/spe 98.4 2E-06 4.2E-11 73.7 8.8 106 107-214 46-162 (482)
232 TIGR02987 met_A_Alw26 type II 98.3 3.7E-06 8E-11 74.9 10.0 76 109-185 32-123 (524)
233 PF04672 Methyltransf_19: S-ad 98.3 4.3E-06 9.3E-11 67.0 9.3 107 110-217 70-194 (267)
234 COG4076 Predicted RNA methylas 98.3 1.2E-06 2.5E-11 65.9 5.5 99 110-210 34-132 (252)
235 KOG1709 Guanidinoacetate methy 98.3 6.3E-06 1.4E-10 63.4 9.6 113 95-211 88-204 (271)
236 PF04816 DUF633: Family of unk 98.3 8E-06 1.7E-10 63.6 10.0 71 112-182 1-74 (205)
237 PF13578 Methyltransf_24: Meth 98.3 4.7E-07 1E-11 63.0 2.1 98 113-214 1-106 (106)
238 PF00398 RrnaAD: Ribosomal RNA 98.2 6.7E-06 1.5E-10 66.7 8.9 103 95-205 16-123 (262)
239 PF05971 Methyltransf_10: Prot 98.2 9.3E-06 2E-10 66.3 8.6 91 98-188 89-191 (299)
240 COG4262 Predicted spermidine s 98.2 2.7E-05 5.8E-10 64.5 10.6 104 110-213 291-407 (508)
241 TIGR00006 S-adenosyl-methyltra 98.2 3.5E-05 7.5E-10 63.4 11.2 81 98-180 9-98 (305)
242 PRK11760 putative 23S rRNA C24 98.1 9.3E-06 2E-10 67.2 7.5 69 107-183 210-279 (357)
243 COG0144 Sun tRNA and rRNA cyto 98.1 6.2E-05 1.3E-09 63.7 12.4 108 106-214 154-289 (355)
244 KOG3115 Methyltransferase-like 98.1 1.7E-05 3.6E-10 60.5 7.7 104 110-213 62-183 (249)
245 KOG4058 Uncharacterized conser 98.1 3E-05 6.5E-10 56.2 8.6 116 95-217 58-176 (199)
246 KOG3987 Uncharacterized conser 98.0 2.6E-06 5.6E-11 65.1 2.3 104 97-212 97-206 (288)
247 PF01269 Fibrillarin: Fibrilla 98.0 6E-05 1.3E-09 58.7 9.1 110 108-224 73-189 (229)
248 COG1189 Predicted rRNA methyla 98.0 4.1E-05 8.9E-10 60.0 8.0 108 95-213 64-178 (245)
249 PF07091 FmrO: Ribosomal RNA m 97.9 7.6E-05 1.6E-09 59.2 8.9 105 108-217 105-211 (251)
250 TIGR01444 fkbM_fam methyltrans 97.9 2.8E-05 6.2E-10 56.9 6.1 57 111-168 1-59 (143)
251 KOG2187 tRNA uracil-5-methyltr 97.9 5.1E-05 1.1E-09 65.5 8.0 101 109-216 384-493 (534)
252 KOG2798 Putative trehalase [Ca 97.8 9.5E-05 2.1E-09 60.1 7.9 100 109-210 151-293 (369)
253 PRK10742 putative methyltransf 97.8 0.00016 3.5E-09 57.4 9.0 76 111-186 91-176 (250)
254 KOG4589 Cell division protein 97.8 0.0002 4.4E-09 54.0 8.7 101 107-219 68-190 (232)
255 KOG3201 Uncharacterized conser 97.8 3.6E-05 7.7E-10 56.7 4.2 102 108-211 29-138 (201)
256 PF01861 DUF43: Protein of unk 97.7 0.0018 3.9E-08 51.2 12.9 111 101-216 37-151 (243)
257 PF01795 Methyltransf_5: MraW 97.7 0.00021 4.5E-09 58.9 7.9 73 106-180 18-99 (310)
258 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00022 4.8E-09 58.5 8.0 107 106-213 83-219 (283)
259 COG0275 Predicted S-adenosylme 97.7 0.001 2.3E-08 54.1 11.5 81 98-180 12-102 (314)
260 COG4798 Predicted methyltransf 97.6 0.00024 5.1E-09 54.0 6.1 112 106-217 46-170 (238)
261 PRK11524 putative methyltransf 97.5 0.00026 5.6E-09 58.2 6.5 59 93-151 193-251 (284)
262 PF11599 AviRa: RRNA methyltra 97.5 0.0015 3.2E-08 50.6 9.8 106 109-214 52-215 (246)
263 PF01555 N6_N4_Mtase: DNA meth 97.4 0.00024 5.1E-09 56.0 5.2 57 92-148 175-231 (231)
264 KOG1501 Arginine N-methyltrans 97.4 0.00026 5.7E-09 60.1 5.6 71 110-180 68-141 (636)
265 COG2384 Predicted SAM-dependen 97.4 0.0024 5.1E-08 49.7 10.2 73 110-182 18-93 (226)
266 COG4627 Uncharacterized protei 97.4 8.9E-05 1.9E-09 54.2 2.2 48 169-216 42-89 (185)
267 PRK13699 putative methylase; P 97.4 0.00046 1E-08 54.7 6.4 61 92-152 147-207 (227)
268 COG1889 NOP1 Fibrillarin-like 97.4 0.0034 7.3E-08 48.2 10.4 110 108-224 76-191 (231)
269 PF04989 CmcI: Cephalosporin h 97.4 0.001 2.2E-08 51.5 7.5 103 106-213 30-147 (206)
270 PF02005 TRM: N2,N2-dimethylgu 97.3 0.00052 1.1E-08 58.4 6.4 98 109-213 50-154 (377)
271 COG1064 AdhP Zn-dependent alco 97.3 0.001 2.2E-08 55.5 7.3 95 106-216 164-262 (339)
272 KOG1562 Spermidine synthase [A 97.1 0.0028 6E-08 51.4 7.9 106 108-213 121-236 (337)
273 KOG2793 Putative N2,N2-dimethy 97.1 0.0035 7.5E-08 50.1 8.3 103 109-214 87-200 (248)
274 COG0286 HsdM Type I restrictio 97.0 0.0084 1.8E-07 53.1 10.9 120 94-213 171-326 (489)
275 PF03492 Methyltransf_7: SAM d 97.0 0.0077 1.7E-07 50.6 9.9 108 110-218 18-188 (334)
276 KOG1227 Putative methyltransfe 96.9 0.00052 1.1E-08 55.6 2.3 99 109-213 195-297 (351)
277 KOG2671 Putative RNA methylase 96.9 0.0022 4.7E-08 53.1 5.8 108 106-213 206-354 (421)
278 PHA01634 hypothetical protein 96.9 0.0029 6.3E-08 44.8 5.5 49 106-154 26-75 (156)
279 COG5459 Predicted rRNA methyla 96.9 0.0018 3.8E-08 53.8 5.0 110 106-216 111-228 (484)
280 TIGR00027 mthyl_TIGR00027 meth 96.9 0.036 7.9E-07 44.9 12.4 106 110-216 83-200 (260)
281 PF04445 SAM_MT: Putative SAM- 96.8 0.0016 3.4E-08 51.6 4.3 77 110-186 77-163 (234)
282 PLN02668 indole-3-acetate carb 96.8 0.0098 2.1E-07 50.7 9.3 109 109-217 64-241 (386)
283 COG3129 Predicted SAM-dependen 96.8 0.0066 1.4E-07 47.6 7.2 91 96-187 62-166 (292)
284 KOG1122 tRNA and rRNA cytosine 96.8 0.013 2.8E-07 49.8 9.3 108 106-215 239-373 (460)
285 PRK09424 pntA NAD(P) transhydr 96.8 0.013 2.8E-07 51.9 9.7 98 107-215 163-287 (509)
286 KOG0822 Protein kinase inhibit 96.6 0.0032 6.9E-08 54.9 4.9 104 110-214 369-479 (649)
287 COG1565 Uncharacterized conser 96.6 0.015 3.3E-07 48.7 8.5 86 99-188 67-163 (370)
288 COG1063 Tdh Threonine dehydrog 96.6 0.0055 1.2E-07 51.9 6.2 98 109-218 169-274 (350)
289 KOG1253 tRNA methyltransferase 96.4 0.0018 3.9E-08 55.9 2.3 100 107-213 108-216 (525)
290 PF03141 Methyltransf_29: Puta 96.4 0.0051 1.1E-07 53.5 5.0 95 110-213 367-467 (506)
291 PF07757 AdoMet_MTase: Predict 96.4 0.0021 4.5E-08 44.2 1.8 33 109-141 59-91 (112)
292 cd00315 Cyt_C5_DNA_methylase C 96.3 0.012 2.6E-07 48.1 6.5 66 111-183 2-71 (275)
293 PRK09880 L-idonate 5-dehydroge 96.3 0.027 5.8E-07 47.4 8.5 97 107-215 168-268 (343)
294 COG4301 Uncharacterized conser 96.2 0.065 1.4E-06 42.6 9.6 102 109-211 79-191 (321)
295 PF02636 Methyltransf_28: Puta 96.1 0.039 8.4E-07 44.5 8.4 43 110-152 20-72 (252)
296 PF11312 DUF3115: Protein of u 96.1 0.013 2.9E-07 48.1 5.6 110 110-219 88-248 (315)
297 KOG1596 Fibrillarin and relate 96.1 0.025 5.5E-07 44.7 6.8 111 107-224 155-272 (317)
298 PF06859 Bin3: Bicoid-interact 96.1 0.004 8.7E-08 43.0 2.1 39 174-212 1-43 (110)
299 COG3510 CmcI Cephalosporin hyd 96.1 0.076 1.7E-06 40.6 8.9 105 106-218 67-185 (237)
300 KOG1099 SAM-dependent methyltr 95.9 0.02 4.4E-07 44.9 5.3 92 110-213 43-163 (294)
301 KOG2920 Predicted methyltransf 95.9 0.0024 5.3E-08 51.5 0.2 106 106-213 114-234 (282)
302 KOG0024 Sorbitol dehydrogenase 95.8 0.024 5.3E-07 46.7 5.9 99 107-218 168-278 (354)
303 PF05711 TylF: Macrocin-O-meth 95.8 0.04 8.6E-07 44.2 6.8 104 109-216 75-215 (248)
304 COG1867 TRM1 N2,N2-dimethylgua 95.8 0.032 6.9E-07 46.8 6.4 98 109-213 53-154 (380)
305 cd08283 FDH_like_1 Glutathione 95.7 0.029 6.2E-07 48.1 6.3 103 108-214 184-307 (386)
306 PF11899 DUF3419: Protein of u 95.6 0.029 6.2E-07 47.9 5.8 60 157-216 275-337 (380)
307 PF03269 DUF268: Caenorhabditi 95.6 0.0063 1.4E-07 45.0 1.6 96 110-213 3-111 (177)
308 PF00107 ADH_zinc_N: Zinc-bind 95.6 0.0067 1.4E-07 43.3 1.7 84 118-216 1-92 (130)
309 cd08230 glucose_DH Glucose deh 95.6 0.058 1.3E-06 45.6 7.6 97 107-216 171-272 (355)
310 COG1568 Predicted methyltransf 95.5 0.14 2.9E-06 41.6 8.8 105 104-213 148-260 (354)
311 PF02254 TrkA_N: TrkA-N domain 95.4 0.2 4.4E-06 34.8 8.7 87 117-216 4-99 (116)
312 cd08254 hydroxyacyl_CoA_DH 6-h 95.3 0.033 7.1E-07 46.4 5.2 92 108-215 165-265 (338)
313 TIGR01202 bchC 2-desacetyl-2-h 95.1 0.11 2.3E-06 43.1 7.7 87 108-215 144-233 (308)
314 KOG2912 Predicted DNA methylas 95.1 0.079 1.7E-06 43.7 6.5 90 95-184 86-188 (419)
315 PTZ00357 methyltransferase; Pr 95.1 0.084 1.8E-06 48.0 7.1 94 111-208 703-830 (1072)
316 COG3315 O-Methyltransferase in 95.0 0.35 7.5E-06 40.0 10.2 103 110-213 94-209 (297)
317 KOG2078 tRNA modification enzy 94.9 0.033 7.1E-07 47.6 3.9 65 105-169 246-311 (495)
318 cd08239 THR_DH_like L-threonin 94.9 0.063 1.4E-06 44.9 5.7 97 107-215 162-264 (339)
319 cd05188 MDR Medium chain reduc 94.8 0.12 2.6E-06 41.2 7.0 95 107-216 133-235 (271)
320 KOG2198 tRNA cytosine-5-methyl 94.8 0.29 6.3E-06 41.2 9.1 110 106-216 153-299 (375)
321 cd08237 ribitol-5-phosphate_DH 94.8 0.15 3.4E-06 42.8 7.8 93 107-215 162-258 (341)
322 TIGR03366 HpnZ_proposed putati 94.7 0.071 1.5E-06 43.5 5.5 93 107-214 119-219 (280)
323 cd00401 AdoHcyase S-adenosyl-L 94.7 0.1 2.3E-06 45.1 6.5 97 98-214 189-290 (413)
324 KOG3924 Putative protein methy 94.6 0.082 1.8E-06 44.8 5.6 111 96-211 179-306 (419)
325 PF10237 N6-adenineMlase: Prob 94.6 0.61 1.3E-05 34.9 9.7 106 95-213 12-123 (162)
326 TIGR02822 adh_fam_2 zinc-bindi 94.6 0.39 8.5E-06 40.2 9.7 91 107-215 164-256 (329)
327 PRK05225 ketol-acid reductoiso 94.6 0.054 1.2E-06 47.0 4.5 105 106-228 33-147 (487)
328 TIGR03451 mycoS_dep_FDH mycoth 94.4 0.063 1.4E-06 45.4 4.6 94 107-215 175-278 (358)
329 PRK01747 mnmC bifunctional tRN 94.4 0.19 4.1E-06 46.4 8.0 104 110-213 59-206 (662)
330 COG1255 Uncharacterized protei 94.4 0.38 8.2E-06 33.6 7.4 88 110-216 15-105 (129)
331 COG0604 Qor NADPH:quinone redu 94.2 0.17 3.8E-06 42.4 6.8 96 108-216 142-244 (326)
332 cd08281 liver_ADH_like1 Zinc-d 94.2 0.09 1.9E-06 44.8 5.1 97 107-215 190-292 (371)
333 PRK10309 galactitol-1-phosphat 94.0 0.13 2.8E-06 43.3 5.6 95 107-216 159-263 (347)
334 PRK05786 fabG 3-ketoacyl-(acyl 93.9 1.3 2.8E-05 34.8 11.1 104 108-214 4-136 (238)
335 PF07279 DUF1442: Protein of u 93.9 1.4 3.1E-05 34.4 10.6 112 107-225 40-160 (218)
336 PF00145 DNA_methylase: C-5 cy 93.5 0.11 2.3E-06 43.3 4.3 62 111-181 2-68 (335)
337 PF10354 DUF2431: Domain of un 93.4 0.62 1.4E-05 35.0 7.8 99 115-216 3-128 (166)
338 TIGR00561 pntA NAD(P) transhyd 93.4 0.54 1.2E-05 41.8 8.5 97 107-213 162-284 (511)
339 COG0863 DNA modification methy 93.3 0.29 6.3E-06 40.2 6.5 60 94-153 208-267 (302)
340 PRK05708 2-dehydropantoate 2-r 93.3 0.75 1.6E-05 38.2 8.9 100 110-215 3-106 (305)
341 PRK11524 putative methyltransf 93.3 0.18 3.9E-06 41.4 5.2 55 158-212 8-79 (284)
342 COG0270 Dcm Site-specific DNA 93.2 0.25 5.5E-06 41.4 6.1 68 110-183 4-76 (328)
343 PRK05854 short chain dehydroge 93.1 1.7 3.6E-05 36.1 10.8 78 107-184 12-103 (313)
344 KOG2651 rRNA adenine N-6-methy 93.1 0.16 3.5E-06 42.9 4.6 39 110-148 155-194 (476)
345 PF04072 LCM: Leucine carboxyl 93.0 0.43 9.3E-06 36.4 6.6 89 110-199 80-182 (183)
346 PF03686 UPF0146: Uncharacteri 93.0 0.17 3.8E-06 36.0 4.0 91 109-218 14-107 (127)
347 TIGR00675 dcm DNA-methyltransf 92.7 0.23 5E-06 41.4 5.1 63 112-181 1-66 (315)
348 PLN02740 Alcohol dehydrogenase 92.6 0.42 9.1E-06 40.9 6.6 93 107-215 197-302 (381)
349 PF02737 3HCDH_N: 3-hydroxyacy 92.4 0.54 1.2E-05 35.9 6.4 97 111-214 1-115 (180)
350 cd08232 idonate-5-DH L-idonate 92.2 0.56 1.2E-05 39.1 6.9 93 107-214 164-263 (339)
351 cd08261 Zn_ADH7 Alcohol dehydr 92.2 0.25 5.4E-06 41.2 4.7 96 107-214 158-259 (337)
352 PRK06522 2-dehydropantoate 2-r 92.1 1.3 2.7E-05 36.5 8.8 98 111-214 2-101 (304)
353 TIGR03201 dearomat_had 6-hydro 92.1 0.36 7.8E-06 40.7 5.6 98 107-216 165-275 (349)
354 PRK07417 arogenate dehydrogena 92.1 0.95 2.1E-05 37.0 7.9 84 111-209 2-87 (279)
355 PRK08324 short chain dehydroge 91.9 2.1 4.6E-05 39.7 10.7 73 108-183 421-507 (681)
356 PRK05476 S-adenosyl-L-homocyst 91.6 0.62 1.3E-05 40.5 6.5 91 106-216 209-302 (425)
357 PRK07109 short chain dehydroge 91.6 3.6 7.9E-05 34.5 11.1 75 107-183 6-94 (334)
358 TIGR00936 ahcY adenosylhomocys 91.6 0.72 1.6E-05 39.9 6.8 90 106-215 192-284 (406)
359 cd05278 FDH_like Formaldehyde 91.5 0.35 7.6E-06 40.4 4.9 92 108-214 167-268 (347)
360 COG2933 Predicted SAM-dependen 91.5 0.72 1.6E-05 37.2 6.2 66 107-180 210-276 (358)
361 cd08285 NADP_ADH NADP(H)-depen 91.5 0.41 8.8E-06 40.3 5.3 96 107-214 165-267 (351)
362 PRK07576 short chain dehydroge 91.5 3.6 7.9E-05 33.0 10.6 74 107-182 7-94 (264)
363 TIGR02825 B4_12hDH leukotriene 91.4 0.71 1.5E-05 38.3 6.6 92 107-214 137-238 (325)
364 PRK08267 short chain dehydroge 91.3 3.6 7.9E-05 32.8 10.5 70 110-183 2-86 (260)
365 cd08234 threonine_DH_like L-th 91.3 1.7 3.6E-05 36.1 8.8 94 107-215 158-259 (334)
366 PRK06701 short chain dehydroge 91.2 3.2 6.9E-05 34.0 10.1 106 106-213 43-181 (290)
367 cd08236 sugar_DH NAD(P)-depend 91.1 0.49 1.1E-05 39.6 5.3 94 107-215 158-260 (343)
368 PRK13699 putative methylase; P 91.1 0.48 1E-05 37.6 5.0 53 160-212 3-71 (227)
369 cd08233 butanediol_DH_like (2R 91.0 0.41 9E-06 40.2 4.9 97 107-215 171-274 (351)
370 PRK06139 short chain dehydroge 91.0 3.9 8.4E-05 34.3 10.6 75 107-183 5-93 (330)
371 cd05281 TDH Threonine dehydrog 90.9 0.67 1.4E-05 38.8 6.0 96 107-214 162-263 (341)
372 cd05285 sorbitol_DH Sorbitol d 90.9 0.62 1.3E-05 39.0 5.8 93 107-214 161-266 (343)
373 PRK03659 glutathione-regulated 90.8 0.55 1.2E-05 42.9 5.7 95 110-217 401-502 (601)
374 COG0287 TyrA Prephenate dehydr 90.8 1.2 2.6E-05 36.5 7.2 87 110-209 4-94 (279)
375 PLN03154 putative allyl alcoho 90.8 1.3 2.8E-05 37.4 7.7 94 107-215 157-260 (348)
376 PRK08217 fabG 3-ketoacyl-(acyl 90.7 5.6 0.00012 31.3 11.0 75 107-183 3-91 (253)
377 PRK08265 short chain dehydroge 90.7 5.2 0.00011 32.0 10.8 71 108-183 5-89 (261)
378 PRK05875 short chain dehydroge 90.6 5.2 0.00011 32.2 10.8 77 107-183 5-95 (276)
379 cd08255 2-desacetyl-2-hydroxye 90.6 2 4.3E-05 34.6 8.3 93 107-214 96-191 (277)
380 PRK05872 short chain dehydroge 90.5 5.5 0.00012 32.7 11.0 75 107-184 7-95 (296)
381 PRK07533 enoyl-(acyl carrier p 90.5 6.2 0.00013 31.6 11.1 104 107-213 8-148 (258)
382 PLN02494 adenosylhomocysteinas 90.3 0.94 2E-05 39.8 6.4 98 98-214 241-342 (477)
383 PRK12939 short chain dehydroge 90.2 3.8 8.3E-05 32.2 9.6 73 108-183 6-93 (250)
384 PRK07806 short chain dehydroge 90.2 5.7 0.00012 31.3 10.6 103 108-212 5-133 (248)
385 PRK06079 enoyl-(acyl carrier p 90.1 7.4 0.00016 31.0 11.2 102 107-213 5-143 (252)
386 TIGR02818 adh_III_F_hyde S-(hy 90.0 0.58 1.3E-05 39.8 4.9 97 107-215 184-289 (368)
387 PLN02827 Alcohol dehydrogenase 89.9 0.58 1.3E-05 40.0 4.8 93 107-215 192-297 (378)
388 TIGR00497 hsdM type I restrict 89.9 4.3 9.3E-05 36.3 10.4 105 108-212 217-354 (501)
389 PRK07066 3-hydroxybutyryl-CoA 89.8 1.3 2.9E-05 37.0 6.8 96 110-211 8-117 (321)
390 cd08245 CAD Cinnamyl alcohol d 89.8 1.6 3.5E-05 36.2 7.4 93 107-214 161-257 (330)
391 PRK09496 trkA potassium transp 89.8 3.5 7.5E-05 36.1 9.7 96 107-216 229-333 (453)
392 PLN02586 probable cinnamyl alc 89.7 1.9 4E-05 36.6 7.7 92 108-215 183-280 (360)
393 PRK10458 DNA cytosine methylas 89.6 1.5 3.2E-05 38.8 7.1 56 110-168 89-145 (467)
394 KOG2352 Predicted spermine/spe 89.4 1.4 3E-05 38.7 6.6 108 109-217 296-420 (482)
395 TIGR02819 fdhA_non_GSH formald 89.3 1.1 2.5E-05 38.5 6.2 102 107-215 184-301 (393)
396 PRK03562 glutathione-regulated 89.3 2.6 5.6E-05 38.7 8.8 95 109-216 400-501 (621)
397 PF02086 MethyltransfD12: D12 89.3 0.92 2E-05 36.4 5.4 51 98-148 9-60 (260)
398 TIGR00518 alaDH alanine dehydr 89.2 0.96 2.1E-05 38.7 5.6 105 107-218 165-272 (370)
399 PRK07985 oxidoreductase; Provi 89.2 8.1 0.00018 31.7 11.0 105 107-213 47-185 (294)
400 cd08231 MDR_TM0436_like Hypoth 89.2 1.1 2.4E-05 37.8 6.0 92 108-214 177-281 (361)
401 KOG2539 Mitochondrial/chloropl 89.2 2.5 5.3E-05 37.0 7.9 106 109-215 201-317 (491)
402 KOG1201 Hydroxysteroid 17-beta 89.1 2.6 5.6E-05 34.7 7.7 74 107-183 36-123 (300)
403 PRK13403 ketol-acid reductoiso 89.1 1.5 3.3E-05 36.7 6.5 106 106-228 13-122 (335)
404 cd08293 PTGR2 Prostaglandin re 89.1 1.3 2.8E-05 37.0 6.4 89 110-213 156-254 (345)
405 PRK07984 enoyl-(acyl carrier p 89.0 11 0.00023 30.4 11.5 74 108-184 5-94 (262)
406 PRK07502 cyclohexadienyl dehyd 89.0 2.6 5.6E-05 35.0 7.9 87 110-210 7-97 (307)
407 PRK10669 putative cation:proto 88.9 0.94 2E-05 40.9 5.6 92 110-214 418-516 (558)
408 cd08294 leukotriene_B4_DH_like 88.7 0.99 2.2E-05 37.3 5.3 91 107-213 142-241 (329)
409 COG5379 BtaA S-adenosylmethion 88.7 1.1 2.4E-05 36.8 5.2 76 134-215 290-368 (414)
410 PRK05808 3-hydroxybutyryl-CoA 88.6 3.7 8E-05 33.6 8.5 94 111-211 5-116 (282)
411 PRK07063 short chain dehydroge 88.5 2.7 5.9E-05 33.5 7.6 77 107-183 5-95 (260)
412 PRK09260 3-hydroxybutyryl-CoA 88.4 2 4.4E-05 35.2 6.9 95 111-211 3-115 (288)
413 PRK05396 tdh L-threonine 3-deh 88.4 1.2 2.6E-05 37.2 5.7 95 107-216 162-266 (341)
414 cd08242 MDR_like Medium chain 88.3 3.2 6.8E-05 34.2 8.1 90 107-213 154-245 (319)
415 PRK08293 3-hydroxybutyryl-CoA 88.2 2.7 5.7E-05 34.5 7.5 95 110-210 4-117 (287)
416 KOG2918 Carboxymethyl transfer 88.2 13 0.00029 30.9 11.1 119 96-216 76-230 (335)
417 cd08277 liver_alcohol_DH_like 88.1 1.2 2.6E-05 37.7 5.6 97 107-216 183-289 (365)
418 cd08278 benzyl_alcohol_DH Benz 88.0 0.93 2E-05 38.4 4.8 91 108-214 186-286 (365)
419 PRK08306 dipicolinate synthase 88.0 2.9 6.4E-05 34.6 7.6 92 107-216 150-244 (296)
420 PRK14620 NAD(P)H-dependent gly 88.0 4.8 0.00011 33.6 9.0 98 111-215 2-108 (326)
421 PRK09496 trkA potassium transp 88.0 9.5 0.00021 33.3 11.2 91 111-215 2-101 (453)
422 PRK08594 enoyl-(acyl carrier p 87.9 11 0.00023 30.2 10.7 103 107-213 5-147 (257)
423 PRK06124 gluconate 5-dehydroge 87.8 2.8 6.1E-05 33.3 7.3 76 106-183 8-97 (256)
424 COG0686 Ald Alanine dehydrogen 87.8 1.7 3.7E-05 36.0 5.8 96 108-210 167-265 (371)
425 TIGR00692 tdh L-threonine 3-de 87.8 1.1 2.3E-05 37.6 5.0 97 107-215 160-263 (340)
426 PRK12921 2-dehydropantoate 2-r 87.6 3.1 6.7E-05 34.2 7.6 96 111-213 2-102 (305)
427 PF05050 Methyltransf_21: Meth 87.6 1.4 3.1E-05 32.3 5.1 36 114-149 1-42 (167)
428 PRK06500 short chain dehydroge 87.6 10 0.00022 29.8 10.3 71 108-183 5-89 (249)
429 COG2910 Putative NADH-flavin r 87.6 2.2 4.7E-05 32.7 5.9 86 117-212 7-103 (211)
430 PF02558 ApbA: Ketopantoate re 87.6 1.7 3.6E-05 31.7 5.4 98 112-215 1-103 (151)
431 KOG1208 Dehydrogenases with di 87.4 10 0.00022 31.7 10.5 80 106-185 32-125 (314)
432 PTZ00075 Adenosylhomocysteinas 87.4 1.4 3.1E-05 38.8 5.5 90 106-215 251-343 (476)
433 PRK06505 enoyl-(acyl carrier p 87.2 14 0.00029 29.9 11.0 75 107-184 5-95 (271)
434 COG1748 LYS9 Saccharopine dehy 87.2 2.8 6E-05 36.1 7.1 69 110-183 2-77 (389)
435 PRK06940 short chain dehydroge 87.2 13 0.00028 30.1 10.9 97 111-211 4-123 (275)
436 cd05284 arabinose_DH_like D-ar 87.1 1.3 2.8E-05 36.9 5.1 94 108-214 167-267 (340)
437 cd08300 alcohol_DH_class_III c 87.1 1.2 2.5E-05 37.9 4.9 94 107-215 185-290 (368)
438 PRK06035 3-hydroxyacyl-CoA deh 87.0 5 0.00011 32.9 8.5 95 110-211 4-119 (291)
439 PRK12744 short chain dehydroge 86.9 14 0.0003 29.4 11.2 102 108-211 7-143 (257)
440 PLN02514 cinnamyl-alcohol dehy 86.9 4.2 9.1E-05 34.4 8.1 95 108-215 180-277 (357)
441 cd08298 CAD2 Cinnamyl alcohol 86.8 4 8.7E-05 33.7 7.9 90 107-214 166-257 (329)
442 cd08295 double_bond_reductase_ 86.6 3.6 7.7E-05 34.4 7.5 92 107-214 150-252 (338)
443 PRK06128 oxidoreductase; Provi 86.5 9 0.00019 31.4 9.8 104 107-212 53-190 (300)
444 PRK06249 2-dehydropantoate 2-r 86.5 3.8 8.2E-05 34.1 7.5 97 110-213 6-106 (313)
445 COG0623 FabI Enoyl-[acyl-carri 86.5 15 0.00032 29.3 10.1 111 106-219 3-150 (259)
446 PRK07819 3-hydroxybutyryl-CoA 86.5 7.3 0.00016 32.0 9.1 97 110-213 6-121 (286)
447 cd08279 Zn_ADH_class_III Class 86.4 1.6 3.4E-05 37.0 5.3 92 108-214 182-283 (363)
448 cd08291 ETR_like_1 2-enoyl thi 86.3 1.4 3.1E-05 36.5 5.0 92 108-215 142-244 (324)
449 KOG0022 Alcohol dehydrogenase, 86.3 3.6 7.8E-05 34.3 6.9 98 107-219 191-300 (375)
450 PRK07035 short chain dehydroge 86.2 4.2 9.1E-05 32.2 7.4 75 107-183 6-94 (252)
451 PRK05867 short chain dehydroge 86.1 4 8.6E-05 32.4 7.3 76 107-184 7-96 (253)
452 COG4017 Uncharacterized protei 86.0 3.1 6.7E-05 32.0 6.0 72 107-190 43-115 (254)
453 COG0569 TrkA K+ transport syst 85.8 2.9 6.2E-05 33.1 6.1 63 111-180 2-72 (225)
454 cd08296 CAD_like Cinnamyl alco 85.7 2.8 6E-05 34.9 6.4 93 108-215 163-261 (333)
455 PRK07530 3-hydroxybutyryl-CoA 85.7 8.9 0.00019 31.4 9.3 95 110-211 5-117 (292)
456 cd08286 FDH_like_ADH2 formalde 85.6 1.8 4E-05 36.1 5.3 94 108-213 166-266 (345)
457 cd08301 alcohol_DH_plants Plan 85.5 1.4 3E-05 37.4 4.5 95 107-216 186-292 (369)
458 PLN02178 cinnamyl-alcohol dehy 85.5 5 0.00011 34.3 8.0 91 108-215 178-275 (375)
459 PRK07889 enoyl-(acyl carrier p 85.4 17 0.00037 29.0 10.7 103 107-214 5-146 (256)
460 PRK06172 short chain dehydroge 85.4 4.8 0.0001 31.9 7.4 75 107-183 5-93 (253)
461 PRK07062 short chain dehydroge 85.3 4.8 0.0001 32.2 7.4 78 107-184 6-97 (265)
462 PRK11064 wecC UDP-N-acetyl-D-m 85.3 2.4 5.2E-05 36.9 5.9 95 110-211 4-117 (415)
463 PRK07890 short chain dehydroge 85.2 4.9 0.00011 31.8 7.4 75 108-184 4-92 (258)
464 PRK07097 gluconate 5-dehydroge 85.1 4.6 0.0001 32.3 7.3 77 106-184 7-97 (265)
465 TIGR02437 FadB fatty oxidation 85.1 4 8.7E-05 38.2 7.6 97 110-213 314-428 (714)
466 cd08263 Zn_ADH10 Alcohol dehyd 85.0 1.7 3.7E-05 36.8 4.9 93 107-214 186-288 (367)
467 PRK12743 oxidoreductase; Provi 85.0 18 0.00038 28.8 10.6 72 110-183 3-89 (256)
468 PRK06484 short chain dehydroge 84.9 13 0.00027 33.2 10.5 71 108-183 4-88 (520)
469 COG1062 AdhC Zn-dependent alco 84.9 3.9 8.5E-05 34.4 6.6 98 107-219 184-291 (366)
470 PF06460 NSP13: Coronavirus NS 84.8 4.2 9E-05 32.9 6.4 91 109-212 62-168 (299)
471 PRK08415 enoyl-(acyl carrier p 84.8 19 0.00042 29.1 11.8 103 108-213 4-143 (274)
472 PRK08339 short chain dehydroge 84.7 6 0.00013 31.8 7.7 76 107-183 6-94 (263)
473 COG1893 ApbA Ketopantoate redu 84.5 6.1 0.00013 32.9 7.8 91 110-214 1-102 (307)
474 PRK06484 short chain dehydroge 84.5 18 0.00038 32.2 11.3 101 108-213 268-400 (520)
475 PRK06914 short chain dehydroge 84.4 6.3 0.00014 31.8 7.8 74 110-183 4-90 (280)
476 PLN02545 3-hydroxybutyryl-CoA 84.2 3.1 6.7E-05 34.3 5.9 92 110-210 5-116 (295)
477 PRK07677 short chain dehydroge 84.2 5.3 0.00012 31.7 7.2 71 110-182 2-86 (252)
478 PRK06182 short chain dehydroge 84.1 14 0.00031 29.6 9.7 68 109-184 3-84 (273)
479 PRK00094 gpsA NAD(P)H-dependen 84.1 7.2 0.00016 32.3 8.2 94 111-212 3-104 (325)
480 PF03514 GRAS: GRAS domain fam 84.0 11 0.00023 32.4 9.2 115 108-226 110-254 (374)
481 PRK08159 enoyl-(acyl carrier p 83.9 21 0.00046 28.8 11.4 104 108-214 9-149 (272)
482 PRK11730 fadB multifunctional 83.9 5.3 0.00011 37.4 7.8 97 110-213 314-428 (715)
483 KOG0821 Predicted ribosomal RN 83.8 3.2 6.9E-05 32.8 5.3 69 98-168 39-109 (326)
484 TIGR02441 fa_ox_alpha_mit fatt 83.8 3.7 7.9E-05 38.6 6.7 97 110-213 336-450 (737)
485 PRK11154 fadJ multifunctional 83.7 5.7 0.00012 37.2 7.9 97 110-213 310-425 (708)
486 PRK08507 prephenate dehydrogen 83.6 5.2 0.00011 32.5 7.0 83 111-210 2-88 (275)
487 cd08240 6_hydroxyhexanoate_dh_ 83.6 2.4 5.1E-05 35.6 5.1 91 108-214 175-275 (350)
488 PRK09072 short chain dehydroge 83.5 7.8 0.00017 30.9 7.9 74 108-184 4-90 (263)
489 PF02826 2-Hacid_dh_C: D-isome 83.5 0.95 2.1E-05 34.3 2.4 39 106-144 33-73 (178)
490 PRK07814 short chain dehydroge 83.4 6.9 0.00015 31.3 7.6 75 107-183 8-96 (263)
491 PRK09186 flagellin modificatio 83.3 6.6 0.00014 31.1 7.4 75 108-182 3-91 (256)
492 KOG0023 Alcohol dehydrogenase, 83.3 11 0.00023 31.6 8.4 101 107-217 180-283 (360)
493 PRK12742 oxidoreductase; Provi 83.3 19 0.00042 27.9 11.9 100 107-213 4-131 (237)
494 PRK07231 fabG 3-ketoacyl-(acyl 82.8 7.6 0.00016 30.5 7.5 74 108-184 4-91 (251)
495 PRK07523 gluconate 5-dehydroge 82.8 7.2 0.00016 30.9 7.4 75 107-184 8-97 (255)
496 PRK09242 tropinone reductase; 82.7 7.4 0.00016 30.9 7.4 78 107-184 7-98 (257)
497 PRK07478 short chain dehydroge 82.6 7.8 0.00017 30.7 7.5 74 108-183 5-92 (254)
498 cd08287 FDH_like_ADH3 formalde 82.5 3 6.6E-05 34.8 5.3 93 108-215 168-270 (345)
499 PRK10083 putative oxidoreducta 82.4 3.6 7.8E-05 34.2 5.7 97 107-215 159-261 (339)
500 cd08238 sorbose_phosphate_red 82.3 12 0.00025 32.4 8.9 97 108-212 175-287 (410)
No 1
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.94 E-value=9.7e-26 Score=176.36 Aligned_cols=159 Identities=19% Similarity=0.369 Sum_probs=137.1
Q ss_pred ccccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhc
Q 026870 73 ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS 151 (231)
Q Consensus 73 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~ 151 (231)
...++|++.|+....+|+...+++.+.+++..... ++.+||++|||.|..+..|++.|+.|+|+|+|+.+++.+.+...
T Consensus 7 ~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~ 86 (226)
T PRK13256 7 NNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNT 86 (226)
T ss_pred CCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcC
Confidence 45678999999999999999999999888887654 45799999999999999999999999999999999999866321
Q ss_pred c-----------CCCCCceEEEEccCCCCCC----CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 152 S-----------LPNAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 152 ~-----------~~~~~~i~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
. .....+++++++|++++.+ .+.||+|+...++++++++.+.++.+.+.++|+|||.++++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 87 INYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 0 0012479999999999643 258999999999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCCCC
Q 026870 217 SDHVGGPPYKVSVSE 231 (231)
Q Consensus 217 ~~~~~~~~~~~~~~~ 231 (231)
+...+||||.|+++|
T Consensus 167 ~~~~~GPPf~v~~~e 181 (226)
T PRK13256 167 DKKSQTPPYSVTQAE 181 (226)
T ss_pred CCCCCCCCCcCCHHH
Confidence 666799999998764
No 2
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.93 E-value=3.9e-25 Score=173.00 Aligned_cols=156 Identities=25% Similarity=0.466 Sum_probs=129.7
Q ss_pred cchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-
Q 026870 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL- 153 (231)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~- 153 (231)
++|++.|.....+|+...+++.+.+++..... ++.+|||+|||.|+++..|+++|.+|+|+|+|+.+++.+.......
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~ 80 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTP 80 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCc
Confidence 47999999999999989999999998886533 5579999999999999999999999999999999999864422110
Q ss_pred ----------CCCCceEEEEccCCCCCC--CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC-CCC
Q 026870 154 ----------PNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-DHV 220 (231)
Q Consensus 154 ----------~~~~~i~~~~~d~~~~~~--~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~-~~~ 220 (231)
....+++++++|++++.. .++||.|+...+++|++++.+..+++.+.++|+|||++++.+|..+ .+.
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~ 160 (213)
T TIGR03840 81 TVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM 160 (213)
T ss_pred ceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC
Confidence 012468999999999553 3579999999999999999999999999999999999888777553 445
Q ss_pred CCCCCCCCCCC
Q 026870 221 GGPPYKVSVSE 231 (231)
Q Consensus 221 ~~~~~~~~~~~ 231 (231)
.||||.++.+|
T Consensus 161 ~gpp~~~~~~e 171 (213)
T TIGR03840 161 AGPPFSVSPAE 171 (213)
T ss_pred CCcCCCCCHHH
Confidence 78999887654
No 3
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.92 E-value=3.8e-24 Score=167.98 Aligned_cols=157 Identities=24% Similarity=0.420 Sum_probs=128.3
Q ss_pred ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC
Q 026870 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL 153 (231)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~ 153 (231)
.++|++.|.....+|+...+++.+.+++..... ++.+|||+|||.|..+..|+++|.+|+|+|+|+.+++.+.......
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~ 82 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLT 82 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCC
Confidence 468999999999999989999999998875433 4579999999999999999999999999999999999874321110
Q ss_pred -----------CCCCceEEEEccCCCCCCC--CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc-CCCC
Q 026870 154 -----------PNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP-ISDH 219 (231)
Q Consensus 154 -----------~~~~~i~~~~~d~~~~~~~--~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~-~~~~ 219 (231)
....+|++.++|++++.+. ..||+|+...+++|++++.+.++++.+.++|+|||++++.++. ...+
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~ 162 (218)
T PRK13255 83 PQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE 162 (218)
T ss_pred ccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc
Confidence 0135799999999996433 5899999999999999999999999999999999875554432 2344
Q ss_pred CCCCCCCCCCCC
Q 026870 220 VGGPPYKVSVSE 231 (231)
Q Consensus 220 ~~~~~~~~~~~~ 231 (231)
..||||.++.+|
T Consensus 163 ~~gPp~~~~~~e 174 (218)
T PRK13255 163 LAGPPFSVSDEE 174 (218)
T ss_pred CCCCCCCCCHHH
Confidence 688999887654
No 4
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.92 E-value=8e-25 Score=171.50 Aligned_cols=156 Identities=46% Similarity=0.846 Sum_probs=120.4
Q ss_pred ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-
Q 026870 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS- 152 (231)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~- 152 (231)
.++|++.|.....+|+...+++.+.+++..... ++.+||..|||.|..+..|++.|.+|+|+|+|+.+++.+.+....
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~ 82 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLE 82 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTE
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccC
Confidence 468999999999999999999999999998544 346999999999999999999999999999999999998443211
Q ss_pred -C----C-----CCCceEEEEccCCCCCCCC--ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcE--EEEEEccCCC
Q 026870 153 -L----P-----NAKFVSFLKADFFTWCPTE--LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISD 218 (231)
Q Consensus 153 -~----~-----~~~~i~~~~~d~~~~~~~~--~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~--li~~~~~~~~ 218 (231)
. . ...+|++.++|++++.+.. +||+|+...+++.++++.+.++.+.+.++|+|||. |+...|....
T Consensus 83 ~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~ 162 (218)
T PF05724_consen 83 PTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE 162 (218)
T ss_dssp EECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC
T ss_pred CCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC
Confidence 0 0 1246899999999965443 79999999999999999999999999999999999 5556666554
Q ss_pred CCCCCCCCCCCCC
Q 026870 219 HVGGPPYKVSVSE 231 (231)
Q Consensus 219 ~~~~~~~~~~~~~ 231 (231)
. .||||.++++|
T Consensus 163 ~-~GPPf~v~~~e 174 (218)
T PF05724_consen 163 M-EGPPFSVTEEE 174 (218)
T ss_dssp S-SSSS----HHH
T ss_pred C-CCcCCCCCHHH
Confidence 4 59999998754
No 5
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.88 E-value=1.2e-21 Score=152.20 Aligned_cols=138 Identities=15% Similarity=0.236 Sum_probs=110.7
Q ss_pred CCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC
Q 026870 91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC 170 (231)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~ 170 (231)
...+.+.+.+.+. ..++.+|||+|||+|.++..|++.|.+|+++|+|+.+++.++++....++ .++++...|+.+..
T Consensus 15 ~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~ 91 (197)
T PRK11207 15 LTRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLT 91 (197)
T ss_pred CCCChHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCC
Confidence 3455677776665 34568999999999999999999999999999999999999988766554 35889999988754
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE-EEccCCCC--CCCCCCCCCCCC
Q 026870 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT-LMFPISDH--VGGPPYKVSVSE 231 (231)
Q Consensus 171 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~-~~~~~~~~--~~~~~~~~~~~~ 231 (231)
..++||+|++..+++|++++.+..+++++.++|+|||++++ ..+..++. ..||||..+.+|
T Consensus 92 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~e 155 (197)
T PRK11207 92 FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGE 155 (197)
T ss_pred cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHH
Confidence 45679999999999999888899999999999999999655 44444322 357788766543
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.85 E-value=2.4e-20 Score=131.86 Aligned_cols=106 Identities=32% Similarity=0.461 Sum_probs=91.6
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC-CCCCCCCceeEEEeCC-c
Q 026870 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTWCPTELFDLIFDYT-F 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~fD~I~~~~-~ 183 (231)
|+.+|||+|||+|..+..+++ ++.+|+++|+|+++++.++++.......++++++++|+ ......+.||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 467999999999999999999 89999999999999999999996666678999999999 4454456799999999 5
Q ss_pred ccccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 184 FCAIEP-EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 184 ~~~~~~-~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
++++.. +...++++.+.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 554433 677899999999999999998865
No 7
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.84 E-value=6.4e-20 Score=139.91 Aligned_cols=132 Identities=23% Similarity=0.310 Sum_probs=100.6
Q ss_pred ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC
Q 026870 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP 154 (231)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~ 154 (231)
.++|.+.|..... .+.+...++ ..+++++||+|||.|+++.+|++.|..|+++|.|+.+++.+++.....+
T Consensus 6 ~~y~~kky~~~~~-------hs~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~ 76 (192)
T PF03848_consen 6 EDYFHKKYGLTPT-------HSEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG 76 (192)
T ss_dssp TTHHHHHHTB-----------HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCCCCC-------cHHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC
Confidence 4566666644332 333444433 4467899999999999999999999999999999999999988877665
Q ss_pred CCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 155 NAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 155 ~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
+. |+....|+.+...++.||+|++..+++|++++.++.+++.+.+.++|||++++.++-..
T Consensus 77 l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~ 137 (192)
T PF03848_consen 77 LD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET 137 (192)
T ss_dssp -T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--
T ss_pred ce--eEEEEecchhccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc
Confidence 43 89999999886656789999999999999999999999999999999999888776433
No 8
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.83 E-value=1.6e-19 Score=139.96 Aligned_cols=117 Identities=13% Similarity=0.155 Sum_probs=95.0
Q ss_pred cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026870 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 174 (231)
...+...+. ..++.+|||+|||+|.++..+++.|.+|+++|+|+.+++.++++....++ ++.+...|+.....+.+
T Consensus 19 ~~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~ 94 (195)
T TIGR00477 19 HSAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNED 94 (195)
T ss_pred hHHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCC
Confidence 334444443 33458999999999999999999999999999999999999987765543 36777788765433468
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 175 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
||+|++..+++|++++....+++.+.++|+|||++++..+-
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEec
Confidence 99999999999998888899999999999999997666553
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.83 E-value=9.6e-20 Score=143.28 Aligned_cols=108 Identities=27% Similarity=0.316 Sum_probs=98.0
Q ss_pred CCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~ 184 (231)
++.+|||+|||||..+..+++.. .+|+++|+|+.|++.|+++....+... ++|+.+|+++ ++++.+||+|.+.+.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehh
Confidence 67999999999999999999844 599999999999999999998765544 9999999999 7889999999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
.+++ +..++|+++.|+|||||++++.+++...
T Consensus 130 rnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 130 RNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred hcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 9995 6678999999999999999999998753
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.82 E-value=2.3e-20 Score=144.50 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=111.6
Q ss_pred cCCCChhHHHHHHHHhccccccchhhhhccCCCCCCCCCCcHHHHHHHH-----cCCCCCCcEEEecCCCchHHHHhcCC
Q 026870 55 NVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ-----SGALPKGRALVPGCGTGYDVVAMASP 129 (231)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vLDiGcG~G~~~~~l~~~ 129 (231)
....+..+++.+.++. ..+|+...... +-+.. ++.-..++. +..+++.+|||+|||.|.++..||+.
T Consensus 9 ~~~id~~e~~~F~~la----~~wwd~~g~f~--~LH~~--N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~ 80 (243)
T COG2227 9 TQNVDYKELDKFEALA----SRWWDPEGEFK--PLHKI--NPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL 80 (243)
T ss_pred cccCCHHHHHHHHHHH----hhhcCCCCcee--eeeee--ccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC
Confidence 3455666777776666 55665333222 11211 222122222 22368899999999999999999999
Q ss_pred CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcE
Q 026870 130 ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE 208 (231)
Q Consensus 130 ~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 208 (231)
|++|+|+|++++.|+.|+.+..+.++. +++.+...++.... ++||+|+|..+++|++++ ..+++.|.+++||||.
T Consensus 81 Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp--~~~~~~c~~lvkP~G~ 156 (243)
T COG2227 81 GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDP--ESFLRACAKLVKPGGI 156 (243)
T ss_pred CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHHHccCCH--HHHHHHHHHHcCCCcE
Confidence 999999999999999999998876643 66888888875443 799999999999999755 4599999999999999
Q ss_pred EEEEEccC
Q 026870 209 LITLMFPI 216 (231)
Q Consensus 209 li~~~~~~ 216 (231)
+++.+-..
T Consensus 157 lf~STinr 164 (243)
T COG2227 157 LFLSTINR 164 (243)
T ss_pred EEEecccc
Confidence 99887554
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.81 E-value=2.4e-18 Score=144.22 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=94.6
Q ss_pred CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026870 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~~ 185 (231)
++.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.++++....+..++++|+.+|+.+ ++++++||+|++..+++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 457999999999999999998 4789999999999999999988776666789999999988 55678999999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
|++ +..++++++.++|||||.+++.++..
T Consensus 198 h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 198 HMP--DKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred ccC--CHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 995 45689999999999999999988754
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.81 E-value=1.2e-19 Score=143.88 Aligned_cols=110 Identities=25% Similarity=0.294 Sum_probs=83.9
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeC
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY 181 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~ 181 (231)
..++.+|||+|||+|..+..+++ +..+|+++|+|+.+++.|+++....+.. +|+++++|..+ ++++++||+|++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~ 123 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCS 123 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHH
Confidence 45568999999999999999887 3359999999999999999988766543 79999999999 6778899999999
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
+.++++++ ..+.++++.++|||||++++.+|+...
T Consensus 124 fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 124 FGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp S-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred hhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 99999864 567999999999999999999997653
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.79 E-value=6.4e-19 Score=142.31 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=99.2
Q ss_pred HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCce
Q 026870 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELF 175 (231)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~f 175 (231)
+..++.....++.+|||+|||+|.++..+++.+.+|+++|+|+++++.|+++....+..++++++++|+.+. .+.++|
T Consensus 34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 344555544456799999999999999999999999999999999999999988776667899999999773 345789
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
|+|++..+++|+++. ..+++++.++|||||+|++..+..
T Consensus 114 D~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 114 DLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECc
Confidence 999999999999543 578999999999999998877654
No 14
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.79 E-value=8.6e-19 Score=119.81 Aligned_cols=93 Identities=31% Similarity=0.422 Sum_probs=81.2
Q ss_pred EEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcccccChH
Q 026870 113 LVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPE 190 (231)
Q Consensus 113 LDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~~~~~~~ 190 (231)
||+|||+|..+..+++. +.+|+++|+++++++.++++.... ++.+..+|..+ ++++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence 89999999999999997 889999999999999999988654 46799999999 5677899999999999999 6
Q ss_pred HHHHHHHHHHhhcCCCcEEEE
Q 026870 191 MRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 191 ~~~~~l~~~~~~L~pgG~li~ 211 (231)
+..++++++.++|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 778999999999999999975
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.79 E-value=5.2e-19 Score=146.12 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=92.1
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcccc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCA 186 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~I~~~~~~~~ 186 (231)
++.+|||||||+|.++..+++.|.+|+|+|+++++++.|+++........+++++++|+.+. ...++||+|++..+++|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 45699999999999999999999999999999999999998765443335799999998874 45578999999999999
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+++ ...+++++.++|||||.+++.+...
T Consensus 211 v~d--~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 211 VAN--PAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred cCC--HHHHHHHHHHHcCCCcEEEEEECCc
Confidence 964 3689999999999999999887644
No 16
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=4.7e-18 Score=139.46 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=97.2
Q ss_pred cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026870 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 174 (231)
...+...+. ..++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.++++....++ ++++...|+......++
T Consensus 109 ~~~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~ 184 (287)
T PRK12335 109 HSEVLEAVQ--TVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEE 184 (287)
T ss_pred cHHHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCC
Confidence 333444443 24457999999999999999999999999999999999999998876654 58888888877544678
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 175 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
||+|++..+++|++++....+++++.++|+|||+++++.+
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999999888889999999999999999766543
No 17
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.78 E-value=6.7e-18 Score=136.74 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=107.9
Q ss_pred ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhcc
Q 026870 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSS 152 (231)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~ 152 (231)
...|+..+...... ..-......++....+ ++.+|||+|||+|..+..+++ .+.+|+++|+++.+++.++++...
T Consensus 21 ~~~~e~~~g~~~~~---~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 21 IKAYEFIFGEDYIS---SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred chhHHHHhCCCCCC---CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc
Confidence 34566666543321 1113446666666544 458999999999999998876 567999999999999999988654
Q ss_pred CCCCCceEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 153 LPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 153 ~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
.+++.|..+|+.+ ++++++||+|++..+++|++.+++..+++++.++|||||.+++.++...
T Consensus 98 ---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 98 ---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred ---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 2479999999987 5566799999999999998877889999999999999999999887554
No 18
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.78 E-value=2.6e-18 Score=129.72 Aligned_cols=128 Identities=23% Similarity=0.266 Sum_probs=96.3
Q ss_pred CCCCCCCCCC-cHHHH--HHHH-cCCCCC-CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCce
Q 026870 85 GLTPWDIGQP-APIIV--HLHQ-SGALPK-GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV 159 (231)
Q Consensus 85 ~~~~~~~~~~-~~~~~--~~~~-~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i 159 (231)
...||..... ++..+ .++. ....+. .++||+|||.|.++..|+.++.+++++|+++.+++.|+++.... ++|
T Consensus 15 ~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V 91 (201)
T PF05401_consen 15 NDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHV 91 (201)
T ss_dssp SSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCe
Confidence 3457876533 33322 2232 123333 69999999999999999999899999999999999999998765 479
Q ss_pred EEEEccCCCCCCCCceeEEEeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 160 SFLKADFFTWCPTELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 160 ~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+|++.|+.+..|+++||+|+++.+++++++ +++..+++.+...|+|||.|++.++.
T Consensus 92 ~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 92 EWIQADVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp EEEES-TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred EEEECcCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 999999999888899999999999999975 68899999999999999999998874
No 19
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.78 E-value=1.2e-18 Score=136.07 Aligned_cols=103 Identities=20% Similarity=0.260 Sum_probs=87.1
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCC-----ceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-----FVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
++|||+|||.|.++..|++.|+.|+|+|.++.+++.|+++....+... ++.+...+++... +.||.|+|..++
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcsevl 168 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSEVL 168 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHHHH
Confidence 689999999999999999999999999999999999999854433222 3667777777654 359999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+|+ .+...++..+.++|||||.|++.+-..
T Consensus 169 eHV--~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 169 EHV--KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHH--hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 999 566789999999999999999987443
No 20
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.78 E-value=5.4e-18 Score=136.23 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=95.7
Q ss_pred HHHcCCCCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026870 101 LHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (231)
Q Consensus 101 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD 176 (231)
++.....++.+|||+|||+|..+..+++ ++.+++++|+|+.+++.|+++....+...+++++++|+.+... ..+|
T Consensus 49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D 127 (247)
T PRK15451 49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENAS 127 (247)
T ss_pred HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCC
Confidence 3333344568999999999999888765 5679999999999999999998776655679999999988543 3599
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
+|++..+++|++++.+..+++++.++|+|||.|++.+.
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999999999888889999999999999999999874
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.77 E-value=3.9e-18 Score=127.20 Aligned_cols=105 Identities=26% Similarity=0.367 Sum_probs=90.5
Q ss_pred CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCC
Q 026870 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYT 182 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~I~~~~ 182 (231)
.+.+|||+|||+|.++..+++ ++.+++|+|+++++++.|++++...+.. +++|+++|+.+... .+.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence 357999999999999999993 4679999999999999999988777655 89999999999442 27899999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+++|+. +...+++.+.++|+++|.+++..+.
T Consensus 82 ~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999985 4468899999999999999988765
No 22
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.76 E-value=1.3e-17 Score=134.87 Aligned_cols=110 Identities=21% Similarity=0.154 Sum_probs=91.7
Q ss_pred CCCCcEEEecCCCchHHHHhcCC-C--CeEEEEeCChHHHHHHHHHhcc--CCCCCceEEEEccCCC-CCCCCceeEEEe
Q 026870 107 LPKGRALVPGCGTGYDVVAMASP-E--RYVVGLEISDIAIKKAEELSSS--LPNAKFVSFLKADFFT-WCPTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~iD~s~~~i~~a~~~~~~--~~~~~~i~~~~~d~~~-~~~~~~fD~I~~ 180 (231)
.++.+|||+|||+|.++..+++. + .+|+|+|+|+++++.|+++... .....+++++++|+.+ ++++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 34579999999999999988873 2 4899999999999999876531 1123479999999988 566779999999
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
..+++|++ +..++++++.++|||||++++.++....
T Consensus 152 ~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 152 GYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred ecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 99999985 4578999999999999999999987643
No 23
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.75 E-value=2.6e-17 Score=131.77 Aligned_cols=109 Identities=18% Similarity=0.204 Sum_probs=93.7
Q ss_pred CCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~ 182 (231)
.++.+|||+|||+|..+..+++ ++.+++|+|+|+.+++.|+++....+...+++++++|+.+.... .+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 4567999999999999988876 46799999999999999999887655445799999999885433 589999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+++|+++++...+++++.++|+|||.+++.+...
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 9999988888999999999999999999987543
No 24
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.74 E-value=6.1e-18 Score=117.43 Aligned_cols=94 Identities=30% Similarity=0.357 Sum_probs=79.3
Q ss_pred EEEecCCCchHHHHhcCC---C--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeC-Ccc
Q 026870 112 ALVPGCGTGYDVVAMASP---E--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY-TFF 184 (231)
Q Consensus 112 vLDiGcG~G~~~~~l~~~---~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~-~~~ 184 (231)
|||+|||+|..+..+++. + .+++++|+|+++++.++++....+. +++|++.|+.+ ....++||+|++. .++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999874 3 7999999999999999998866443 68999999999 3345699999995 559
Q ss_pred cccChHHHHHHHHHHHhhcCCCc
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDG 207 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG 207 (231)
+|++++...++++++.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.73 E-value=7.3e-17 Score=141.36 Aligned_cols=158 Identities=23% Similarity=0.221 Sum_probs=118.0
Q ss_pred cccCCCChhHHHHHHHHhcc-cc----ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHh
Q 026870 53 NDNVIKSHPRVNKLQQLMHI-ES----SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAM 126 (231)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~-~~----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l 126 (231)
+...+++..+.+.+...+.+ .. -..|..+|..... ..........+++.... ++.+|||+|||+|..+..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~f~g~~~~---v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~l 284 (475)
T PLN02336 208 WLWQKVSSTNDKGFQRFLDNVQYKSSGILRYERVFGEGFV---STGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYM 284 (475)
T ss_pred EEEEeecCCcchhHHHHhhhhccccccHHHHHHHhCCCCC---CCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHH
Confidence 44556666666777777654 22 3447777765432 11122244556655433 3579999999999999988
Q ss_pred cC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcC
Q 026870 127 AS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK 204 (231)
Q Consensus 127 ~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~ 204 (231)
++ .+.+|+|+|+|+.+++.|+++.... ..+++|+.+|+.+. .+.++||+|+|..+++|++ +..++++++.++|+
T Consensus 285 a~~~~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~--d~~~~l~~~~r~Lk 360 (475)
T PLN02336 285 AENFDVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ--DKPALFRSFFKWLK 360 (475)
T ss_pred HHhcCCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCCCCCCEEEEEECCcccccC--CHHHHHHHHHHHcC
Confidence 87 5679999999999999999876533 35799999999884 4567899999999999995 45689999999999
Q ss_pred CCcEEEEEEccCC
Q 026870 205 PDGELITLMFPIS 217 (231)
Q Consensus 205 pgG~li~~~~~~~ 217 (231)
|||.|++.++...
T Consensus 361 pgG~l~i~~~~~~ 373 (475)
T PLN02336 361 PGGKVLISDYCRS 373 (475)
T ss_pred CCeEEEEEEeccC
Confidence 9999999887654
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.73 E-value=3.3e-17 Score=132.78 Aligned_cols=117 Identities=25% Similarity=0.266 Sum_probs=94.2
Q ss_pred HHHHHHcCCC-CCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026870 98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 98 ~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f 175 (231)
+..++++..+ ++.+|||||||.|.++..+++. |.+|+|+.+|++..+.+++++.+.++.+++++...|..+... +|
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~f 128 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--KF 128 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--CC
Confidence 3444555544 5589999999999999999996 899999999999999999999999888899999999987543 89
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
|.|++..+++|+.++....+++.+.++|+|||++++..+..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 99999999999998888999999999999999998765543
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.73 E-value=6e-17 Score=126.22 Aligned_cols=101 Identities=16% Similarity=0.271 Sum_probs=87.3
Q ss_pred CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026870 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~ 185 (231)
++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.|+++.. ++.+.++|+.++.+.++||+|++..+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCCCCCCEEEEEECChhh
Confidence 4579999999999999999874 6799999999999999998652 4678899988877778999999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
|++++...++++++.+++ ++.+++.++-.
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 999888999999999997 56777777633
No 28
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.72 E-value=3.2e-16 Score=129.08 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=89.7
Q ss_pred HHHHcC-CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeE
Q 026870 100 HLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL 177 (231)
Q Consensus 100 ~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~ 177 (231)
+++... ..++++|||+|||+|.++..++..|. .|+|+|+|+.++..+...........++.+..+++.+......||+
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~ 191 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDT 191 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCE
Confidence 344443 45678999999999999999988776 7999999999987643321111112468888888888554568999
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
|+|..+++|++ +...+|++++++|+|||.|++.++..++
T Consensus 192 V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 192 VFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred EEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 99999999985 3467899999999999999988765543
No 29
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=1.4e-16 Score=127.66 Aligned_cols=144 Identities=20% Similarity=0.170 Sum_probs=114.4
Q ss_pred cccccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHH
Q 026870 72 IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEEL 149 (231)
Q Consensus 72 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~ 149 (231)
.....||..+|........ ..-...+..++++..+ |+++|||||||-|..++.+|+ .|.+|+|+++|++..+.++++
T Consensus 36 d~~~~Yscayf~~~~~tL~-eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r 114 (283)
T COG2230 36 DPSMTYSCAYFEDPDMTLE-EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKR 114 (283)
T ss_pred CCCCceeeEEeCCCCCChH-HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHH
Confidence 3344566666655432100 0012234555555544 568999999999999999999 589999999999999999999
Q ss_pred hccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 150 SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 150 ~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
+...++.++++++..|..++.. .||-|++...++|+..+....+++.+.+.|+|||.+++.+.....
T Consensus 115 ~~~~gl~~~v~v~l~d~rd~~e--~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 115 IAARGLEDNVEVRLQDYRDFEE--PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHcCCCcccEEEecccccccc--ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9888888899999999999763 499999999999999988999999999999999999887765544
No 30
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.71 E-value=6.4e-17 Score=130.68 Aligned_cols=106 Identities=19% Similarity=0.153 Sum_probs=88.5
Q ss_pred HHHHHcCC-CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026870 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f 175 (231)
..++.... .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++ +++++.+|+.+..+.++|
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~f 90 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDT 90 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCc
Confidence 44455443 35589999999999999999884 67999999999999999763 378999999886566799
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
|+|+++.+++|+++ ..++++++.++|||||.+++...
T Consensus 91 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcC
Confidence 99999999999963 47889999999999999988643
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.70 E-value=2.1e-16 Score=131.36 Aligned_cols=110 Identities=25% Similarity=0.352 Sum_probs=87.5
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
.+++.+|||+|||+|.++..++..|. .|+|+|+|+.++..++......+...+++++.+|+.+....+.||+|+|..++
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl 199 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVL 199 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChh
Confidence 35678999999999999999998775 69999999998876543221111124699999999885446789999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
+|.. +...+++++.++|+|||.+++.++..+
T Consensus 200 ~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~ 230 (322)
T PRK15068 200 YHRR--SPLDHLKQLKDQLVPGGELVLETLVID 230 (322)
T ss_pred hccC--CHHHHHHHHHHhcCCCcEEEEEEEEec
Confidence 9984 346789999999999999998775443
No 32
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.70 E-value=2.3e-16 Score=127.19 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=87.7
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcccc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~~~ 186 (231)
+..+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++.. ...++.+|+.+ ++++++||+|+++.++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 34799999999999999998888999999999999999998753 24688899988 455678999999999988
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
.+ +...++.++.++|+|||.+++.++..+
T Consensus 116 ~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 116 CG--NLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred cC--CHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 74 456889999999999999999887653
No 33
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.69 E-value=6.3e-16 Score=123.05 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=93.3
Q ss_pred HHHHHcCCC-CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCC
Q 026870 99 VHLHQSGAL-PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE 173 (231)
Q Consensus 99 ~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~ 173 (231)
..++..... ++.+|||+|||+|..+..+++ ++.+|+|+|+++.+++.++++....+. ++++++.+|..+ +.+.+
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCC
Confidence 444444433 457999999999999999886 345999999999999999998765544 479999999988 34567
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 174 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+||+|++..+++++++ ..++++++.++|+|||.+++.+...
T Consensus 114 ~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred CccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCC
Confidence 8999999999988853 4678999999999999998877543
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=3e-16 Score=126.96 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=88.9
Q ss_pred HHHHHcCC-CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026870 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f 175 (231)
..++.... .++.+|||+|||+|.++..+++ ++.+|+|+|+|+.+++.++++. .++.|+.+|+.+..+..+|
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~f 94 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQAL 94 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCc
Confidence 34444433 3457999999999999999987 4579999999999999999875 3578999999886666799
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
|+|+++.+++|+++ ...+++++.++|+|||.+++..
T Consensus 95 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 95 DLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEEC
Confidence 99999999999853 4689999999999999988753
No 35
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.68 E-value=8.8e-16 Score=116.55 Aligned_cols=106 Identities=26% Similarity=0.407 Sum_probs=89.1
Q ss_pred CCCcEEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~ 185 (231)
+..+|||+|||+|..+..+++.+. +|+++|+++.+++.++++...++... ++++..|+.+..+.+.||+|+++..++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 568999999999999999998554 69999999999999999999887665 999999999977778999999998765
Q ss_pred ccCh---HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 186 AIEP---EMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 186 ~~~~---~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.-.. +...++++...+.|+|||.|+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 5432 3568899999999999999976543
No 36
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.68 E-value=3e-16 Score=124.37 Aligned_cols=105 Identities=23% Similarity=0.279 Sum_probs=90.7
Q ss_pred CcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026870 110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 187 (231)
++|||+|||+|..+..+++. +.+++|+|+|+.+++.++++....+..++++++..|..+....++||+|++..+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999873 4699999999999999999987777777899999999764334689999999999998
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 188 EPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
. +...+++.+.++|+|||.+++.++..
T Consensus 81 ~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 81 K--DKMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred C--CHHHHHHHHHHHcCCCCEEEEEEccc
Confidence 5 35789999999999999999988643
No 37
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=121.62 Aligned_cols=99 Identities=25% Similarity=0.397 Sum_probs=89.2
Q ss_pred CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
.+..+|.|+|||+|..+..|++ ++..++|+|.|++|++.|+++. ++++|..+|+.++.++..+|+++++.++
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~dllfaNAvl 102 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPTDLLFANAVL 102 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCccchhhhhhhh
Confidence 3458999999999999999998 7889999999999999998876 4689999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
++++ +..+++.++...|+|||+|.+..
T Consensus 103 qWlp--dH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 103 QWLP--DHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhcc--ccHHHHHHHHHhhCCCceEEEEC
Confidence 9995 55789999999999999987643
No 38
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.67 E-value=6.3e-16 Score=124.12 Aligned_cols=110 Identities=23% Similarity=0.264 Sum_probs=85.5
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHH--HHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAE--ELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~--~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~ 182 (231)
.+.+++|||||||.|+++..|+..|+ .|+|+|+++...-... +++.. ....+.++...+++....+.||+|+|..
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg--~~~~~~~lplgvE~Lp~~~~FDtVF~MG 190 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG--QDPPVFELPLGVEDLPNLGAFDTVFSMG 190 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC--CCccEEEcCcchhhccccCCcCEEEEee
Confidence 67789999999999999999999888 7999999998765533 22221 1123444545666644467899999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~ 219 (231)
|++|...+ ...|+.+++.|+|||.|++.+...+++
T Consensus 191 VLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 191 VLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred ehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 99998533 578999999999999999988876654
No 39
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.67 E-value=9e-16 Score=117.40 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=82.6
Q ss_pred CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
.++.+|||+|||+|..+..++. ++.+|+++|.++.+++.++++....+.. +++++++|+.+....++||+|++.. +
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA-L 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh-h
Confidence 4578999999999999998876 4468999999999999999888776553 5999999998865567899999876 4
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+++ ..+++.+.++|+|||.+++..
T Consensus 119 ~~~-----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 ASL-----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred hCH-----HHHHHHHHHhcCCCCEEEEEc
Confidence 333 457788899999999998764
No 40
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.67 E-value=5.5e-18 Score=117.19 Aligned_cols=95 Identities=32% Similarity=0.450 Sum_probs=62.5
Q ss_pred EEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCC--ceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026870 113 LVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 113 LDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~--~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~ 188 (231)
||+|||+|.++..++.. +.+++++|+|+.+++.++++........ .+++...+..+....++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999884 6799999999999988887776653211 233333333334344699999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCcEE
Q 026870 189 PEMRAAWAQKIKDFLKPDGEL 209 (231)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~l 209 (231)
++...+++.+.++|+|||+|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 56679999999999999986
No 41
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.66 E-value=3.8e-16 Score=126.40 Aligned_cols=104 Identities=24% Similarity=0.330 Sum_probs=84.2
Q ss_pred CCcEEEecCCCchH----HHHhcC-------CCCeEEEEeCChHHHHHHHHHhccC------------------------
Q 026870 109 KGRALVPGCGTGYD----VVAMAS-------PERYVVGLEISDIAIKKAEELSSSL------------------------ 153 (231)
Q Consensus 109 ~~~vLDiGcG~G~~----~~~l~~-------~~~~v~~iD~s~~~i~~a~~~~~~~------------------------ 153 (231)
+.+|||+|||+|.. +..+++ .+.+|+|+|+|+.+++.|++.....
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 46999999999974 333333 1458999999999999999854210
Q ss_pred --CCCCceEEEEccCCCCC-CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 154 --PNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 154 --~~~~~i~~~~~d~~~~~-~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
.+..+++|.++|+.+.. +.+.||+|+|.++++|++++.+.++++++.++|+|||+|++.
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 01236899999999954 467899999999999999889999999999999999999874
No 42
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.66 E-value=1.7e-15 Score=117.79 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=94.3
Q ss_pred CCCCcEEEecCCCchHHHHhcC--------CCCeEEEEeCChHHHHHHHHHhccCCCCC--ceEEEEccCCC-CCCCCce
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS--------PERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFT-WCPTELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~--~i~~~~~d~~~-~~~~~~f 175 (231)
.++.++||++||+|..+..+.+ ...+|+++|+|+.++..++++..+.++.+ ++.|+.+|+++ ++++..|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 3458999999999999998876 22589999999999999999886654433 48999999999 7888899
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
|.....+.+.+.+ +..+.|+++.|+|||||++.+.+|+...
T Consensus 179 D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 179 DAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred eeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 9999988888874 5578999999999999999999998754
No 43
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.66 E-value=7.6e-16 Score=115.47 Aligned_cols=97 Identities=30% Similarity=0.326 Sum_probs=81.1
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC 185 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~~ 185 (231)
.++.+|||+|||.|.++..+++.+.+++|+|+++.+++. . ++.+...+... ..+.++||+|+|..+++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R-----NVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T-----TSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h-----hhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 456899999999999999998899999999999999988 1 23333333334 44567999999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
|++ +...+|+.+.++|||||++++.+...
T Consensus 90 ~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 90 HLP--DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp GSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 996 56899999999999999999988765
No 44
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.66 E-value=2.5e-15 Score=124.49 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=94.3
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026870 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~ 185 (231)
+..+|||+|||+|.++..+++ ++.+++++|. +.+++.++++....+..++++++.+|+.+...+ .+|+|++..++|
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~lh 226 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRILY 226 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhhh
Confidence 347999999999999999988 4568999998 789999999988887778899999999863222 379999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~ 219 (231)
+++++...++++++.+.|+|||+|++.++..+++
T Consensus 227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 260 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP 260 (306)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence 9988777899999999999999999999865543
No 45
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.66 E-value=1.3e-15 Score=116.85 Aligned_cols=101 Identities=21% Similarity=0.233 Sum_probs=85.3
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026870 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~ 186 (231)
+.+|||+|||+|..+..+++ ++.+|+++|+++.+++.|+++....+.. +++++.+|+.+....++||+|++...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEccc---
Confidence 68999999999999998875 6679999999999999999998887764 49999999988544668999998752
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
.....+++.+.++|+|||++++.....
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 223578999999999999999886543
No 46
>PLN03075 nicotianamine synthase; Provisional
Probab=99.66 E-value=1.1e-15 Score=123.74 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=101.8
Q ss_pred ccchhhhhccCCCCCCCCCCcHHHHHHHH----------cC-CCCCCcEEEecCCCchH-HHHhcC---CCCeEEEEeCC
Q 026870 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQ----------SG-ALPKGRALVPGCGTGYD-VVAMAS---PERYVVGLEIS 139 (231)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~vLDiGcG~G~~-~~~l~~---~~~~v~~iD~s 139 (231)
...|.+.......||......+....+++ .. ..++.+|+|||||.|.+ +..++. ++.+++++|++
T Consensus 79 E~~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d 158 (296)
T PLN03075 79 EAHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDID 158 (296)
T ss_pred HHHHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCC
Confidence 34555555555566664333222222111 11 22568999999997744 443432 56689999999
Q ss_pred hHHHHHHHHHhcc-CCCCCceEEEEccCCCCCC-CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 140 DIAIKKAEELSSS-LPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 140 ~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+++++.|++.+.. .++.++++|..+|+.+..+ .+.||+|++. ++++++.+.+.++++.+.+.|+|||.|++-.
T Consensus 159 ~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 159 PSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred HHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999999998854 5666789999999998543 4689999999 9999987888999999999999999998865
No 47
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.65 E-value=2.1e-15 Score=123.02 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=89.4
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCC
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~ 182 (231)
.++.+|||+|||+|..+..+++ ...+|+++|+++.+++.|+++....+. ++++++.+|+.+ ..+.++||+|++..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 3568999999999998877665 334799999999999999998766544 378999999988 44566899999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
+++|.+ +..++++++.++|+|||+|++.++...
T Consensus 155 v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~ 187 (272)
T PRK11873 155 VINLSP--DKERVFKEAFRVLKPGGRFAISDVVLR 187 (272)
T ss_pred cccCCC--CHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 998874 346789999999999999999877543
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.65 E-value=3.2e-15 Score=118.07 Aligned_cols=102 Identities=21% Similarity=0.258 Sum_probs=88.7
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 187 (231)
++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++........++.|..+|+.+.. ++||+|++..+++|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLIHY 132 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHHhC
Confidence 458999999999999999999888999999999999999998876554457999999998864 689999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 188 EPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
+++....+++++.+.+++++++.+
T Consensus 133 ~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 133 PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 877788899999999987765544
No 49
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.65 E-value=3.9e-15 Score=126.42 Aligned_cols=111 Identities=26% Similarity=0.285 Sum_probs=93.1
Q ss_pred HHHcCC-CCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEE
Q 026870 101 LHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLI 178 (231)
Q Consensus 101 ~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I 178 (231)
+++... .++.+|||+|||+|.++..+++ .+.+|+|+|+|+++++.|+++.... .+++...|..+. .++||.|
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~l--~~~fD~I 232 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRDL--NGQFDRI 232 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhhc--CCCCCEE
Confidence 444443 3557999999999999999987 5779999999999999999987432 378888887765 3689999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
++..+++|++......+++++.++|||||.+++.++..+
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 999999999877788999999999999999999877554
No 50
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.64 E-value=6.7e-15 Score=121.42 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=81.8
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC----CCCceEEEEccCCCCCCCCceeEEEeCC
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~fD~I~~~~ 182 (231)
.++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.++++..... ...++.|...|+.+. .+.||+|+|..
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~ 220 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLD 220 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcC
Confidence 356799999999999999999999999999999999999999875431 123578999998664 46899999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEE
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
+++|++++....+++.+.. +.++|.++
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 9999987766677877775 45665543
No 51
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.64 E-value=1.3e-15 Score=117.58 Aligned_cols=143 Identities=20% Similarity=0.202 Sum_probs=111.3
Q ss_pred cccccchhhhhccCCCCCCCCCCcHHHHHHHHcC-CC---CCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHH
Q 026870 72 IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG-AL---PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAI 143 (231)
Q Consensus 72 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i 143 (231)
.....+|+.+|....+.+ -..+..+.+=+... .. +..+|||+|||.|.....+++ .+..++++|.|+.++
T Consensus 33 ~~~~k~wD~fy~~~~~rF--fkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai 110 (264)
T KOG2361|consen 33 REASKYWDTFYKIHENRF--FKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI 110 (264)
T ss_pred cchhhhhhhhhhhccccc--cchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH
Confidence 445689999999887754 22244443333322 22 224899999999999999988 336899999999999
Q ss_pred HHHHHHhccCCCCCceEEEEccCCC-----CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 144 KKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 144 ~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
+..+++..... .++.....|+.. +...+++|+|.+.+++..++++....++..+.++|||||.|++-+|...+
T Consensus 111 ~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 111 ELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred HHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 99998776543 456666677766 34567999999999999999999999999999999999999999998763
No 52
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.63 E-value=7.6e-15 Score=119.62 Aligned_cols=158 Identities=20% Similarity=0.177 Sum_probs=106.0
Q ss_pred ceeeeccccccccCcccCC---CccccccccCCCChhHHHHHHHHhccccccchhhhhccCCCCCCCCCCcHHHHHHHHc
Q 026870 28 SSVRTRSFGIRATKPKMGK---NREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS 104 (231)
Q Consensus 28 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
.++++.+ +++.+..+-+. ....-+..+.+.+..++-..++.+ +..+.+ ......+..++..
T Consensus 17 ~~~~C~~-~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~f-----------l~~g~y----~~l~~~i~~~l~~ 80 (272)
T PRK11088 17 NSWICPQ-NHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAF-----------LDAGHY----QPLRDAVANLLAE 80 (272)
T ss_pred CEEEcCC-CCCCccccCceEEeccccccCCCCCCcCHHHHHHHHHH-----------HHCCCh----HHHHHHHHHHHHH
Confidence 4567765 67766655443 222223556667777777766655 222111 1112223333433
Q ss_pred C-CCCCCcEEEecCCCchHHHHhcCC-----CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeE
Q 026870 105 G-ALPKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDL 177 (231)
Q Consensus 105 ~-~~~~~~vLDiGcG~G~~~~~l~~~-----~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~ 177 (231)
. ..+..+|||+|||+|.++..+++. +..++|+|+|+.+++.|+++. +++.|..+|+.+ ++++++||+
T Consensus 81 ~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~ 154 (272)
T PRK11088 81 RLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDA 154 (272)
T ss_pred hcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeE
Confidence 2 233478999999999999988752 237999999999999998764 357899999988 556779999
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
|++.... ..++++.++|||||+++++...+
T Consensus 155 I~~~~~~---------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 155 IIRIYAP---------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEEecCC---------CCHHHHHhhccCCCEEEEEeCCC
Confidence 9975432 13578999999999999876543
No 53
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.63 E-value=1.2e-14 Score=122.39 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=87.9
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCC--CceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
..+|||+|||+|..+..+++ ++.+|+++|.|+.+++.+++++..+... .+++++..|..+..+..+||+|+|+..+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 36999999999999999988 4569999999999999999998765432 3689999998876555689999998777
Q ss_pred cc---cChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 185 CA---IEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~---~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
|. +++....++++.+.++|+|||.|+++.
T Consensus 309 h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 309 HQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 64 344556789999999999999999875
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.63 E-value=7.4e-15 Score=116.75 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=102.2
Q ss_pred HHHHHHhccccccchhhhhccCCCCCCCC----CCcHH---HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCCeEEE
Q 026870 64 NKLQQLMHIESSGGWEKCWEEGLTPWDIG----QPAPI---IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVG 135 (231)
Q Consensus 64 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~----~~~~~---~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~ 135 (231)
..++..+.+...+.|...|.......... ..... +..++... ..++.+|||+|||+|.++..+++.+..|++
T Consensus 11 ~~v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~ 90 (230)
T PRK07580 11 SEVRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVA 90 (230)
T ss_pred hhhhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEE
Confidence 33444554445677888886632210000 01111 22233321 234579999999999999999998889999
Q ss_pred EeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEE
Q 026870 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209 (231)
Q Consensus 136 iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 209 (231)
+|+++.+++.|+++....+..+++++..+|+... .++||+|++..+++|++++....+++.+.+.+++++.+
T Consensus 91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 91 SDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred EECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 9999999999999887665545799999995433 46799999999999988888888999998877655543
No 55
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.62 E-value=4.4e-15 Score=123.34 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=84.8
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026870 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~ 184 (231)
++.+|||+|||+|.++..+++ .+.+|+++|+++.+++.++++... .+++++.+|+.+ .++.++||+|++..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 457999999999999988876 356999999999999999987542 358899999988 4456789999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+|+++. ..+++++.++|+|||.+++..
T Consensus 189 ~~~~d~--~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 189 EYWPDP--QRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred hhCCCH--HHHHHHHHHhcCCCcEEEEEE
Confidence 998644 568999999999999998764
No 56
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.62 E-value=6.1e-15 Score=129.24 Aligned_cols=106 Identities=23% Similarity=0.244 Sum_probs=91.0
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCcc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~I~~~~~~ 184 (231)
++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++.... .++++++++|+.+ ..+.++||+|++..++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 457999999999999999999888999999999999987664322 2468999999864 3456789999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+|++++...++++++.++|+|||++++.+...
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 99988888999999999999999999877543
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.62 E-value=9.8e-15 Score=111.77 Aligned_cols=108 Identities=18% Similarity=0.288 Sum_probs=89.3
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~ 186 (231)
.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....+. +++++.+|+.+.. .++||+|+++..+++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEEEECCCCCC
Confidence 4457999999999999999999877999999999999999998876543 5889999988754 348999999988776
Q ss_pred cChH-------------------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 187 IEPE-------------------MRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 187 ~~~~-------------------~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
.++. ...++++.+.++|+|||.+++......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 6431 246789999999999999988775543
No 58
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.62 E-value=2.6e-15 Score=106.78 Aligned_cols=104 Identities=24% Similarity=0.330 Sum_probs=87.2
Q ss_pred CcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeCCccc
Q 026870 110 GRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~I~~~~~~~ 185 (231)
.+|||+|||+|.++..+++.+ .+++++|+++..++.+++++...+..++++++.+|+.+. .+..+||+|+++..+.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 589999999999999999977 799999999999999999998887777899999999883 4678999999987765
Q ss_pred ccC------hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 186 AIE------PEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 186 ~~~------~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
... .+....+++.+.++|+|||.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 431 1245788999999999999998764
No 59
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.62 E-value=7.2e-15 Score=117.22 Aligned_cols=102 Identities=25% Similarity=0.230 Sum_probs=86.8
Q ss_pred CCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~ 184 (231)
.+.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++.. +++.++.+|+.+ +.+.++||+|++..++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence 34799999999999999998844 478999999999999988764 258899999988 4466789999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+|+. +...+++.+.++|+|||.+++..+..
T Consensus 109 ~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 109 QWCD--DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhcc--CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 9984 34679999999999999999887654
No 60
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.61 E-value=1.2e-14 Score=119.25 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=88.7
Q ss_pred HHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEE
Q 026870 100 HLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLI 178 (231)
Q Consensus 100 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I 178 (231)
.++.....++.+|||+|||+|.++..+++.|. +|+++|+++.+++.|+++...+++..++.+...+.... ..++||+|
T Consensus 151 ~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlV 229 (288)
T TIGR00406 151 EWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVI 229 (288)
T ss_pred HHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEE
Confidence 34444455678999999999999999888765 89999999999999999998777666777777764333 34689999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+++... +....++..+.++|+|||.+++..+..
T Consensus 230 van~~~-----~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 230 VANILA-----EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred EEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 987543 344678999999999999999987643
No 61
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.61 E-value=1.7e-14 Score=112.75 Aligned_cols=107 Identities=21% Similarity=0.131 Sum_probs=85.2
Q ss_pred HHHHHcCC-CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCC
Q 026870 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE 173 (231)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 173 (231)
..+++... .++.+|||+|||+|+.+..+++ .+.+|+++|+++++++.+++++...+...+++++.+|..+.. ...
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 33444433 3557999999999999988876 245899999999999999999887766567999999998843 346
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 174 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+||+|++..++.+++ .++.+.|+|||+|++..
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 899999998887764 35778999999997754
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.61 E-value=5.1e-15 Score=115.41 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=84.0
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC-CCC---CCCCceeEEEeC
Q 026870 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTW---CPTELFDLIFDY 181 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~---~~~~~fD~I~~~ 181 (231)
++.+|||+|||+|..+..+++ ++.+|+++|+++.+++.++++....+. .++.++++|+ ... .++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 568999999999999999987 456899999999999999998876654 5699999999 442 456789999986
Q ss_pred CcccccC------hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 182 TFFCAIE------PEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 182 ~~~~~~~------~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
....+.. ......+++++.++|+|||++++.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 5433221 1124678999999999999998875
No 63
>PRK05785 hypothetical protein; Provisional
Probab=99.61 E-value=8.5e-15 Score=115.99 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=78.7
Q ss_pred CCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026870 108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~~ 185 (231)
++.+|||+|||+|..+..+++. +.+|+|+|+|+++++.|++.. .++++|+.+ ++++++||+|++..+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChhh
Confidence 4689999999999999999886 579999999999999998642 356788887 56678999999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
|++ +..++++++.++|||. +.+.+++
T Consensus 122 ~~~--d~~~~l~e~~RvLkp~--~~ile~~ 147 (226)
T PRK05785 122 ASD--NIEKVIAEFTRVSRKQ--VGFIAMG 147 (226)
T ss_pred ccC--CHHHHHHHHHHHhcCc--eEEEEeC
Confidence 985 4578999999999994 3344443
No 64
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=9.7e-15 Score=128.62 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=89.0
Q ss_pred CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeC
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~I~~~ 181 (231)
.++.+|||+|||+|..+..+++ ++.+++|+|+|+.+++.|+++....+ .++.++++|..+. +++++||+|+++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 3568999999999999988876 56799999999999999998765433 3578899998773 456789999999
Q ss_pred Cccccc-----------ChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 182 TFFCAI-----------EPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 182 ~~~~~~-----------~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
.++|++ +.....++++++.++|||||.+++.+..
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 888865 2356789999999999999999998753
No 65
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.60 E-value=2.7e-14 Score=116.81 Aligned_cols=105 Identities=24% Similarity=0.282 Sum_probs=85.2
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc-
Q 026870 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC- 185 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~- 185 (231)
+.+|||+|||+|.++..+++ ++.+|+++|+|+.+++.|+++...++..++++++.+|+.+..+..+||+|+++..+.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVD 201 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCC
Confidence 46999999999999999997 456999999999999999999988776678999999998766556899999974321
Q ss_pred -----ccCh-----------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 186 -----AIEP-----------------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 186 -----~~~~-----------------~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
++++ +....+++.+.+.|+|||++++..
T Consensus 202 ~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 202 AEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred ccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111 233678899999999999987643
No 66
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.60 E-value=4.3e-15 Score=109.96 Aligned_cols=139 Identities=21% Similarity=0.294 Sum_probs=104.5
Q ss_pred ccchhhhhccCCC----------CCCCCCCcHHHHHHHHcC-C----CCC-CcEEEecCCCchHHHHhcCCCC--eEEEE
Q 026870 75 SGGWEKCWEEGLT----------PWDIGQPAPIIVHLHQSG-A----LPK-GRALVPGCGTGYDVVAMASPER--YVVGL 136 (231)
Q Consensus 75 ~~~w~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~----~~~-~~vLDiGcG~G~~~~~l~~~~~--~v~~i 136 (231)
.+||++.|..... -|.-......+..++... . .+. .+|||+|||.|.+...|++.|. ..+|+
T Consensus 18 K~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~Gv 97 (227)
T KOG1271|consen 18 KSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGV 97 (227)
T ss_pred HHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCcccc
Confidence 4788888876211 344444444455554433 1 122 3999999999999999999665 59999
Q ss_pred eCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcccccC--h----HHHHHHHHHHHhhcCCCcEE
Q 026870 137 EISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIE--P----EMRAAWAQKIKDFLKPDGEL 209 (231)
Q Consensus 137 D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~I~~~~~~~~~~--~----~~~~~~l~~~~~~L~pgG~l 209 (231)
|+|+++++.|+..++..+.++.|+|.+.|+.++ ...+.||+|+....+..++ + .-+..++..+.+.|+|||++
T Consensus 98 DYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gif 177 (227)
T KOG1271|consen 98 DYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIF 177 (227)
T ss_pred ccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEE
Confidence 999999999999888888877899999999994 4567899999988776642 1 12256788899999999998
Q ss_pred EEEE
Q 026870 210 ITLM 213 (231)
Q Consensus 210 i~~~ 213 (231)
+|..
T Consensus 178 vItS 181 (227)
T KOG1271|consen 178 VITS 181 (227)
T ss_pred EEEe
Confidence 8754
No 67
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.59 E-value=1.7e-14 Score=115.08 Aligned_cols=108 Identities=26% Similarity=0.309 Sum_probs=91.0
Q ss_pred CCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~I~~~~~ 183 (231)
++.+|||+|||+|.++..++..+ .+++++|+++.+++.++++....+...++.++.+|+.+. ...+.||+|++..+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 45899999999999999998744 699999999999999999886654445789999999884 34568999999999
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
+++++ +...+++.+.+.|+|||.+++.++...
T Consensus 131 l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 131 LRNVP--DIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred cccCC--CHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 88885 346789999999999999998877543
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.58 E-value=2.3e-14 Score=114.25 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=87.7
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCcc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~I~~~~~~ 184 (231)
.++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....+. ++++...++.+.. ..+.||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 4568999999999999999998888999999999999999988765432 4778888877743 45789999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+|.+. ...+++.+.+.|+|||.+++..+.
T Consensus 125 ~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 125 EHVPD--PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred hccCC--HHHHHHHHHHHcCCCcEEEEEecC
Confidence 98853 457899999999999999887653
No 69
>PRK06202 hypothetical protein; Provisional
Probab=99.58 E-value=2.2e-14 Score=114.25 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=81.8
Q ss_pred CCCcEEEecCCCchHHHHhcC----CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEe
Q 026870 108 PKGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~----~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~ 180 (231)
++.+|||+|||+|.++..|++ .| .+|+|+|+++.+++.|+++.... ++.+...+... ..++++||+|++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEEE
Confidence 457999999999999888874 23 49999999999999998875432 35566655444 224568999999
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
+.++||+++++...+++++.++++ |.+++.++..+
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 999999988777899999999998 56666666543
No 70
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.58 E-value=6.9e-14 Score=100.25 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=81.1
Q ss_pred CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeEEEeCCc
Q 026870 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 183 (231)
++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++....+. .+++++.+|.... ....+||+|++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhhcCCCCEEEECCc
Confidence 3479999999999999999883 46899999999999999988766543 3688998887652 22358999998665
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.. ...++++.+.+.|+|||.+++..+
T Consensus 98 ~~-----~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 GG-----LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ch-----hHHHHHHHHHHHcCCCCEEEEEec
Confidence 43 335889999999999999987643
No 71
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.57 E-value=6.3e-14 Score=114.86 Aligned_cols=104 Identities=24% Similarity=0.301 Sum_probs=84.2
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc---
Q 026870 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF--- 184 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~--- 184 (231)
.+|||+|||+|.++..++. ++.+|+++|+|+++++.|+++...++...+++|+++|+.+..+..+||+|+++..+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999997 45699999999999999999988777666799999999986655589999997322
Q ss_pred ----------cccCh----------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 185 ----------CAIEP----------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ----------~~~~~----------~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
.|-|. .....+++.+.+.|+|||++++..
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 11111 245678899999999999886633
No 72
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.2e-14 Score=116.00 Aligned_cols=112 Identities=25% Similarity=0.247 Sum_probs=89.0
Q ss_pred HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026870 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (231)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD 176 (231)
...++++...++.+|||+|||+|.+++..++.|+ .++|+|++|.+++.+++|...+++...++....+.......++||
T Consensus 152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D 231 (300)
T COG2264 152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD 231 (300)
T ss_pred HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence 4556666677889999999999999999999998 699999999999999999998876543333334444444446999
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
+|+++- +. +....+...+.+.|+|||+++++..
T Consensus 232 vIVANI-LA----~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 232 VIVANI-LA----EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred EEEehh-hH----HHHHHHHHHHHHHcCCCceEEEEee
Confidence 999865 22 3446788999999999999998764
No 73
>PRK08317 hypothetical protein; Provisional
Probab=99.57 E-value=6.1e-14 Score=111.79 Aligned_cols=105 Identities=28% Similarity=0.373 Sum_probs=87.3
Q ss_pred CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCC
Q 026870 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~ 182 (231)
.++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++... ...++++..+|+.+ ..+.++||+|++..
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCCCCCCceEEEEec
Confidence 34579999999999999999873 45899999999999999987332 22468999999887 44567899999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+++|+.+ ...+++++.++|+|||.+++.+..
T Consensus 96 ~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 96 VLQHLED--PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hhhccCC--HHHHHHHHHHHhcCCcEEEEEecC
Confidence 9999853 467899999999999999987753
No 74
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.56 E-value=2.2e-14 Score=116.98 Aligned_cols=111 Identities=24% Similarity=0.249 Sum_probs=86.3
Q ss_pred HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026870 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (231)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD 176 (231)
..+++++...++.+|||+|||+|.+++..++.|+ +|+++|+++.+++.|++|...+++.+++.+. ...+ ...++||
T Consensus 151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~-~~~~~~d 227 (295)
T PF06325_consen 151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED-LVEGKFD 227 (295)
T ss_dssp HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC-TCCS-EE
T ss_pred HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc-cccccCC
Confidence 4555555567778999999999999999999888 8999999999999999999999888776553 2222 2347899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+|+++... +.+..++..+.++|+|||.|+++..-.
T Consensus 228 lvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 228 LVVANILA-----DVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp EEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred EEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 99976554 444678888999999999999987643
No 75
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.8e-14 Score=107.64 Aligned_cols=108 Identities=23% Similarity=0.251 Sum_probs=90.4
Q ss_pred HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCce
Q 026870 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELF 175 (231)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~f 175 (231)
+..+++.. ..++.+|||||||+|+.+..|++...+|+.+|..++..+.|++++...+.. |+.++++|... +.+..+|
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCc
Confidence 34444444 445689999999999999999997779999999999999999999888764 49999999999 5555799
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
|.|+.......+|. .+.+.||+||++++..=
T Consensus 140 D~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 140 DRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99999888887763 47889999999987543
No 76
>PRK14967 putative methyltransferase; Provisional
Probab=99.56 E-value=1.1e-13 Score=109.70 Aligned_cols=115 Identities=19% Similarity=0.218 Sum_probs=88.3
Q ss_pred HHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026870 97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (231)
Q Consensus 97 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 174 (231)
.+...+.... .++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+. +++++.+|+.+..+.++
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCC
Confidence 3444454433 3457999999999999999988665 999999999999999998876543 48899999988666678
Q ss_pred eeEEEeCCcccccCh-------------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 175 FDLIFDYTFFCAIEP-------------------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 175 fD~I~~~~~~~~~~~-------------------~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
||+|+++..+..-+. .....+++.+.++|+|||++++..
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999754332211 124568888999999999988754
No 77
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.56 E-value=5.6e-14 Score=110.69 Aligned_cols=106 Identities=24% Similarity=0.192 Sum_probs=83.2
Q ss_pred HHHHHcC-CCCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCC
Q 026870 99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE 173 (231)
Q Consensus 99 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 173 (231)
..+++.. ..++.+|||+|||+|+.+..+++.. .+|+++|+++.+++.|++++...+. ++++++.+|..+.. ...
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccC
Confidence 3344433 3355899999999999999998743 3699999999999999999887765 57999999998743 345
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 174 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+||+|++.....+++ +.+.+.|+|||+|++..
T Consensus 146 ~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 146 PYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred CCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence 899999877665553 45778899999988754
No 78
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.56 E-value=4.2e-14 Score=113.87 Aligned_cols=104 Identities=24% Similarity=0.243 Sum_probs=80.6
Q ss_pred HHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEE
Q 026870 101 LHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIF 179 (231)
Q Consensus 101 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~ 179 (231)
.+.....++.+|||+|||+|..+..+++.|. +|+++|+++.+++.|+++...+++.+++.+..++. +||+|+
T Consensus 112 ~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vv 184 (250)
T PRK00517 112 ALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIV 184 (250)
T ss_pred HHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEE
Confidence 3333345678999999999999998888776 59999999999999999988776544454443332 799999
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
++... +....++..+.++|+|||++++..+..
T Consensus 185 ani~~-----~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 185 ANILA-----NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred EcCcH-----HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 86442 344678899999999999999886644
No 79
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=1.9e-13 Score=112.88 Aligned_cols=103 Identities=24% Similarity=0.305 Sum_probs=84.3
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc--
Q 026870 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC-- 185 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~-- 185 (231)
.+|||+|||+|.++..++. ++.+|+++|+|+.+++.|+++...++..++++++++|+.+..+..+||+|+++..+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999987 456999999999999999999988776667999999998865556899999974321
Q ss_pred ----ccCh-----------------HHHHHHHHHHHhhcCCCcEEEEE
Q 026870 186 ----AIEP-----------------EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 186 ----~~~~-----------------~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
.+++ +....+++.+.+.|+|||.+++.
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1110 23467889999999999998874
No 80
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.56 E-value=1.2e-13 Score=108.59 Aligned_cols=129 Identities=25% Similarity=0.235 Sum_probs=94.3
Q ss_pred chhhhhccCCCCCCCCC--CcHHHHH-HHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc
Q 026870 77 GWEKCWEEGLTPWDIGQ--PAPIIVH-LHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152 (231)
Q Consensus 77 ~w~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~ 152 (231)
+++..|.....+|.... ..+.+.. ++.... .++.+|||+|||+|..+..+++.+.+++++|+++.+++.+++++..
T Consensus 43 ~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~ 122 (212)
T PRK00312 43 FKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ 122 (212)
T ss_pred HHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH
Confidence 44555665555544332 2444433 333333 3458999999999999998887666899999999999999999877
Q ss_pred CCCCCceEEEEccCCCCCC-CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 153 LPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 153 ~~~~~~i~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.+.. ++++..+|..+..+ .++||+|++...++++ .+.+.+.|+|||.+++...
T Consensus 123 ~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 123 LGLH-NVSVRHGDGWKGWPAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCC-ceEEEECCcccCCCcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 6543 59999999877433 4689999988776655 3457789999999987655
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.55 E-value=1e-13 Score=108.80 Aligned_cols=106 Identities=19% Similarity=0.148 Sum_probs=82.7
Q ss_pred HHHHHcCC-CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCC
Q 026870 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE 173 (231)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~ 173 (231)
..++.... .++.+|||+|||+|+.+..+++. +.+|+++|+++++++.+++++...+. .+++++.+|..+ +....
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCC
Confidence 33444333 35689999999999999888763 35999999999999999999876654 469999999887 33456
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 174 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+||+|++.....+++ +.+.+.|+|||+|++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 899999887765553 35677899999987743
No 82
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.55 E-value=8.1e-14 Score=122.32 Aligned_cols=165 Identities=18% Similarity=0.232 Sum_probs=112.8
Q ss_pred Cccccc-cccCCCChhHHHHHHHHhccccc-------cchhhhhccC--CCCCCCCCCcHHHHHHHHcC----C------
Q 026870 47 NREEVE-NDNVIKSHPRVNKLQQLMHIESS-------GGWEKCWEEG--LTPWDIGQPAPIIVHLHQSG----A------ 106 (231)
Q Consensus 47 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~------ 106 (231)
+...+. +...+++..+.+.+.+++.++.. -++..||... ..+ ....|++..+.+++.. .
T Consensus 39 ~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~-~VLIPRpeTE~Lve~~l~~~~~~~~~~ 117 (506)
T PRK01544 39 PIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNK-HVLIPRSDTEVLVDVVFQCHSRESGNP 117 (506)
T ss_pred CHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcEEEeCC-CcccCCCcHHHHHHHHHHHhhhccccc
Confidence 344443 44567777777777777764433 2334444432 223 3445555544443321 0
Q ss_pred -------------------CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc
Q 026870 107 -------------------LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165 (231)
Q Consensus 107 -------------------~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d 165 (231)
.++.+|||+|||+|..+..++. ++.+|+++|+|+.+++.|+++...+++.++++++.+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D 197 (506)
T PRK01544 118 EKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSN 197 (506)
T ss_pred cccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecc
Confidence 1235899999999999998876 5679999999999999999998877766789999999
Q ss_pred CCCCCCCCceeEEEeCCcccccC-------------h-----------HHHHHHHHHHHhhcCCCcEEEEE
Q 026870 166 FFTWCPTELFDLIFDYTFFCAIE-------------P-----------EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 166 ~~~~~~~~~fD~I~~~~~~~~~~-------------~-----------~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
+.+..+.+.||+|+++..+...+ | +....+++.+.+.|+|||.+++.
T Consensus 198 ~~~~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 198 WFENIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred hhhhCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 98765556899999975322110 0 12356778888999999998763
No 83
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.55 E-value=3e-14 Score=107.60 Aligned_cols=106 Identities=21% Similarity=0.311 Sum_probs=89.7
Q ss_pred CcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceE-EEEccCCCCC--CCCceeEEEeCCccc
Q 026870 110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVS-FLKADFFTWC--PTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~-~~~~d~~~~~--~~~~fD~I~~~~~~~ 185 (231)
..|||+|||+|.+-.+.-- ++..|+++|+++.+-+.+.+.+.++ ...++. |+.++.++.. +++++|.|++..++.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~-k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK-KPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc-cCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 5789999999998877653 7889999999999999999888766 334566 8999999944 788999999999987
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
-. ++..+.|+++.++|+|||++++.++...+
T Consensus 157 Sv--e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 157 SV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred cc--CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 76 55678899999999999999999986653
No 84
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.55 E-value=1.8e-13 Score=114.48 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=85.5
Q ss_pred CCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026870 109 KGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~ 186 (231)
..+|||+|||+|.++..+++. +.+|+++|+++.+++.++++...++.. .+++..|..+.. .++||+|+++..||.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~-~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI-KGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc-CCCccEEEECCCccC
Confidence 468999999999999999884 458999999999999999988876543 567788877643 468999999988876
Q ss_pred c---ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 187 I---EPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 187 ~---~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
. ......++++.+.+.|+|||.|+++..
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 3 235668999999999999999987653
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.55 E-value=1.4e-13 Score=106.01 Aligned_cols=109 Identities=23% Similarity=0.330 Sum_probs=87.7
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCc-eEEEEccCCCCCCCCceeEEEeCCccc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~fD~I~~~~~~~ 185 (231)
.++.+|||+|||+|..+..++..+.+++++|+++.+++.++++....+..++ +.++.+|+.+......||+|+++..+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL 101 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence 3557999999999999999999888999999999999999988766554333 889999998866666899999876543
Q ss_pred ccC-------------------hHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 186 AIE-------------------PEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 186 ~~~-------------------~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
.-. ......+++.+.++|+|||.+++...+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 311 233467899999999999998876543
No 86
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.55 E-value=8.6e-14 Score=109.89 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=88.0
Q ss_pred CCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~I~~~~~ 183 (231)
++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++.. ...++++..+|+.+. .+.++||+|++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence 56899999999999999998743 389999999999999998775 234689999999884 44568999999999
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+++++ +...+++.+.+.|+|||.+++.++..
T Consensus 116 ~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 116 LRNVT--DIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred eCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 88874 45689999999999999999988754
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.54 E-value=3.4e-14 Score=110.10 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=83.3
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCCCceeEEEeCC
Q 026870 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDYT 182 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~fD~I~~~~ 182 (231)
..+|||||||+|.++..+++ +..+++|+|+++.+++.|+++....++. +++++++|+.+. .+.+.+|.|++..
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46999999999999999998 4569999999999999999887766543 799999999762 3456899999876
Q ss_pred cccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026870 183 FFCAIEPE------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 183 ~~~~~~~~------~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
...+.... ....+++.+.++|||||.|++.+
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 54432211 11578999999999999998865
No 88
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.54 E-value=4.8e-14 Score=111.20 Aligned_cols=107 Identities=26% Similarity=0.309 Sum_probs=90.6
Q ss_pred CCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCc
Q 026870 109 KGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTF 183 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~I~~~~~ 183 (231)
.++|||+|||+|..++.++++ . .+++++|+++++.+.|+++...+++.+++++++.|+.+.. ...+||+|+|+..
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 589999999999999999985 3 6999999999999999999999889999999999999943 2346999999876
Q ss_pred ccccChH----------------HHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 184 FCAIEPE----------------MRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 184 ~~~~~~~----------------~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
++-.... ..+.+++...++|||||.+.++.-+
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 6543211 2378999999999999999887643
No 89
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.54 E-value=8.5e-14 Score=107.30 Aligned_cols=100 Identities=17% Similarity=0.081 Sum_probs=81.3
Q ss_pred CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++....+. .+++++.+|..... .+.||+|++....
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIEL-PGKADAIFIGGSG 107 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhc-CcCCCEEEECCCc
Confidence 35589999999999999999873 46999999999999999998876654 36899999876543 3579999987655
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
.++ ..+++.+.+.|+|||++++..
T Consensus 108 ~~~-----~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 108 GNL-----TAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred cCH-----HHHHHHHHHhcCCCeEEEEEE
Confidence 443 457889999999999997754
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.54 E-value=3e-13 Score=114.29 Aligned_cols=163 Identities=21% Similarity=0.259 Sum_probs=106.5
Q ss_pred CCccccc-cccCCCChhHHHHHHHHhccccc-------cchhhhhccC--CCCCCCCCCcHHHHHHHHcC---CCCCCcE
Q 026870 46 KNREEVE-NDNVIKSHPRVNKLQQLMHIESS-------GGWEKCWEEG--LTPWDIGQPAPIIVHLHQSG---ALPKGRA 112 (231)
Q Consensus 46 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~v 112 (231)
.+..++. +...+++..+.+++.+++.++.. .....+|... ..+ ....|++..+.+++.. ..++.+|
T Consensus 177 ~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p-~vLIPRpeTE~LVe~aL~~l~~~~rV 255 (423)
T PRK14966 177 YTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNP-NVLIPRPETEHLVEAVLARLPENGRV 255 (423)
T ss_pred cCHHHHhhCCcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCC-CccCCCccHHHHHHHhhhccCCCCEE
Confidence 3334433 44566777777777776654422 1223333321 111 1223454444444432 2244799
Q ss_pred EEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-C-CCCceeEEEeCCcccccC
Q 026870 113 LVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C-PTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 113 LDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~fD~I~~~~~~~~~~ 188 (231)
||+|||+|..+..++. ++.+|+++|+|+.+++.|+++...++ .+++++++|+.+. . ..++||+|+|+..+..-.
T Consensus 256 LDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~ 333 (423)
T PRK14966 256 WDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENG 333 (423)
T ss_pred EEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccccCCCccEEEECCCCCCcc
Confidence 9999999999998886 56799999999999999999987765 3699999999773 2 245799999976532110
Q ss_pred ------------h-----------HHHHHHHHHHHhhcCCCcEEEE
Q 026870 189 ------------P-----------EMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 189 ------------~-----------~~~~~~l~~~~~~L~pgG~li~ 211 (231)
| +....+++.+.+.|+|||.+++
T Consensus 334 e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 334 DKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred hhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 0 1235777788889999998765
No 91
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.53 E-value=2.5e-13 Score=109.35 Aligned_cols=115 Identities=27% Similarity=0.354 Sum_probs=88.4
Q ss_pred HHHHHHcCCCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026870 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f 175 (231)
+..++......+.+|||+|||+|.++..++. ++.+++++|+++.+++.++++....+.. ++.++.+|+.+..+.++|
T Consensus 77 ~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~f 155 (251)
T TIGR03534 77 VEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKF 155 (251)
T ss_pred HHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCce
Confidence 3344443333446999999999999999998 3569999999999999999988766553 699999999886667789
Q ss_pred eEEEeCCcccc------cChHH------------------HHHHHHHHHhhcCCCcEEEEEE
Q 026870 176 DLIFDYTFFCA------IEPEM------------------RAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 176 D~I~~~~~~~~------~~~~~------------------~~~~l~~~~~~L~pgG~li~~~ 213 (231)
|+|+++..+.. +.++. ...+++.+.++|+|||.+++..
T Consensus 156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 99999755432 21111 2478899999999999987753
No 92
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=5.7e-13 Score=108.75 Aligned_cols=105 Identities=27% Similarity=0.354 Sum_probs=82.9
Q ss_pred CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
.++.+|||+|||+|..+..++.. ..+++++|+++.+++.++++.. .....++.++.+|+.+..+.++||+|+++..+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34579999999999999999883 4699999999999999999886 22335799999999886656789999986443
Q ss_pred cc------cCh------------------HHHHHHHHHHHhhcCCCcEEEEE
Q 026870 185 CA------IEP------------------EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 185 ~~------~~~------------------~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
.- +.+ +....+++.+.++|+|||.+++.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 21 111 23367888899999999999874
No 93
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.53 E-value=1.7e-13 Score=113.13 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=83.5
Q ss_pred CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCC----ceeEE
Q 026870 108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTE----LFDLI 178 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~----~fD~I 178 (231)
++.+|||+|||+|..+..|++. +.+|+++|+|+++++.++++.....-..++.++++|+.+.. +.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4479999999999999999874 57999999999999999887654221234778999998732 221 23455
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
++...++++++++...+++++.++|+|||.+++..
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 55577899999899999999999999999987744
No 94
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.53 E-value=8.4e-14 Score=111.58 Aligned_cols=105 Identities=26% Similarity=0.373 Sum_probs=90.0
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026870 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 187 (231)
.+|+|||+|.|.++..+++ ++.+++.+|. |++++.+++ .++++++.+|+++..|. +|+++..+++|++
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEEESSGGGS
T ss_pred cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceeeehhhhhc
Confidence 6899999999999999988 7789999999 889998888 36899999999987766 9999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCC--cEEEEEEccCCCCCCCCC
Q 026870 188 EPEMRAAWAQKIKDFLKPD--GELITLMFPISDHVGGPP 224 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pg--G~li~~~~~~~~~~~~~~ 224 (231)
++++..++|+++++.|+|| |+|+|.++-.++...+++
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~ 210 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPP 210 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHH
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCch
Confidence 9999999999999999999 999999987766544443
No 95
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.48 E-value=7.9e-13 Score=102.83 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=81.7
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeC
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~I~~~ 181 (231)
.++.+|||+|||+|.++..+++ .+.+|+++|+++.+++.++++...+++.+++.++.+|..+.. ..+.||.|++.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 4568999999999999998865 346899999999999999999887765567999999988732 23579999975
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
... .....+++.+.+.|+|||++++.
T Consensus 119 ~~~-----~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 119 GGS-----EKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCc-----ccHHHHHHHHHHHcCCCcEEEEE
Confidence 421 34467899999999999999763
No 96
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.2e-12 Score=105.35 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=95.0
Q ss_pred CCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026870 92 GQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 92 ~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
.....--+-+++.... ...+|||+|||.|.++..+++ +..+++-+|.+..+++.+++++..++... ..++..|+.+
T Consensus 141 ~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~ 219 (300)
T COG2813 141 DKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYE 219 (300)
T ss_pred CCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccc
Confidence 3333334445554433 346999999999999999999 44599999999999999999998876543 3678888888
Q ss_pred CCCCCceeEEEeCCcccc---cChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 169 WCPTELFDLIFDYTFFCA---IEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 169 ~~~~~~fD~I~~~~~~~~---~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
...+ +||+|+|+..||. +......++++...+.|++||.|.++..
T Consensus 220 ~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 220 PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 7655 8999999988875 2234456899999999999999988876
No 97
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.48 E-value=4e-13 Score=106.40 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=87.3
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCCccc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~I~~~~~~~ 185 (231)
.+.+|||+|||+|.++..+++.+..++++|+++.+++.++++....+. .++++...|+.+... .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 467999999999999999988788899999999999999988765432 158888888877332 36899999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
|+. +...+++.+.+.|+|||.+++....
T Consensus 124 ~~~--~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 124 HVP--DPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hCC--CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 885 3457899999999999999887653
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.47 E-value=8.2e-13 Score=110.98 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=85.8
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCC
Q 026870 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYT 182 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~I~~~~ 182 (231)
.+..+||||||+|.++..+|+ +...++|+|+++.+++.+.+++...++ .++.++++|+.. ..+++++|.|++.+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 346999999999999999998 567999999999999999988877655 469999999865 45678999999876
Q ss_pred cccccChH----HHHHHHHHHHhhcCCCcEEEEEE
Q 026870 183 FFCAIEPE----MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 183 ~~~~~~~~----~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
...|.-.. ....+++.+.++|+|||.+.+.+
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 55442211 12689999999999999998855
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.47 E-value=1.2e-12 Score=109.57 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=86.8
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCccc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC 185 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~I~~~~~~~ 185 (231)
.++.+|||+|||+|.++..++..+.+++|+|+++.++..+++++...+..+ ++++.+|+.+. .+.+.||+|+++..+.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCc
Confidence 355799999999999999888888999999999999999999988776554 88999999984 3456899999975432
Q ss_pred c-------cChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 186 A-------IEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 186 ~-------~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
. ...+...++++.+.+.|+|||++++..
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 2 112345789999999999999987764
No 100
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.46 E-value=7.7e-13 Score=103.58 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=76.4
Q ss_pred CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---------CCCCc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL 174 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~~~ 174 (231)
.++.+|||+|||+|.++..+++. +..|+++|+++. .. . .+++++++|+.+. ...++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~--~-~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DP--I-VGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cC--C-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 35579999999999999988873 358999999882 11 1 3589999999984 34578
Q ss_pred eeEEEeCCcccccChH---------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 175 FDLIFDYTFFCAIEPE---------MRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 175 fD~I~~~~~~~~~~~~---------~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
||+|++..+.++.... ....+|+.+.++|+|||.+++..|..+
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 9999998765543221 125689999999999999999888664
No 101
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=1.2e-12 Score=103.40 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=76.5
Q ss_pred CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEe
Q 026870 107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~I~~ 180 (231)
.++.+|||+|||+|.++..+++. ...|+++|+++++++.+.+++... .++.++.+|..++. ..+.||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEEE
Confidence 35579999999999999999884 348999999999999877766543 46899999987631 1346999995
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
... .+.....+++++.+.|||||.+++.
T Consensus 148 d~~----~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVA----QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCC----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 422 1223355789999999999999984
No 102
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.45 E-value=2.5e-12 Score=88.26 Aligned_cols=100 Identities=34% Similarity=0.454 Sum_probs=83.0
Q ss_pred cEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCccccc
Q 026870 111 RALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFFCAI 187 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~I~~~~~~~~~ 187 (231)
+|+|+|||.|..+..+++ .+.+++++|+++..++.+++..... ...++.++..|+.+.. ...+||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 6679999999999999988533222 2346899999999854 45689999999998874
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 188 EPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 367788999999999999998765
No 103
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.45 E-value=9.9e-13 Score=101.25 Aligned_cols=106 Identities=22% Similarity=0.226 Sum_probs=82.4
Q ss_pred CcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCCccccc
Q 026870 110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCAI 187 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 187 (231)
.+.||.|+|-|+.+..++.+ ..+|-.+|+.+..++.|++.+.... ..-.++++..+.++.|. .+||+|++.+++.|+
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence 69999999999999877664 4599999999999999998765521 12367899999997765 699999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 188 EPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
++++..++|++|.+.|+|+|++++-+-..
T Consensus 136 TD~dlv~fL~RCk~~L~~~G~IvvKEN~~ 164 (218)
T PF05891_consen 136 TDEDLVAFLKRCKQALKPNGVIVVKENVS 164 (218)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 99999999999999999999999876543
No 104
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.43 E-value=3.2e-13 Score=104.10 Aligned_cols=104 Identities=26% Similarity=0.339 Sum_probs=73.7
Q ss_pred CCCcEEEecCCCchHHHHhc----C-----C--CCeEEEEeCChHHHHHHHHHhccCC----------------------
Q 026870 108 PKGRALVPGCGTGYDVVAMA----S-----P--ERYVVGLEISDIAIKKAEELSSSLP---------------------- 154 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~----~-----~--~~~v~~iD~s~~~i~~a~~~~~~~~---------------------- 154 (231)
+..+|+.+||++|.-...|| + . ..+++|+|+|+.+++.|++-.....
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34699999999997665554 2 1 2489999999999999976322210
Q ss_pred -----CCCceEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 155 -----NAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 155 -----~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
+..+|.|.+.|+.+ ..+.+.||+|+|.+++.+++++.+.++++.+.+.|+|||+|++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 12379999999999 5566799999999999999999999999999999999999976
No 105
>PHA03411 putative methyltransferase; Provisional
Probab=99.43 E-value=1.8e-12 Score=103.87 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=86.6
Q ss_pred CcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC
Q 026870 94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171 (231)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 171 (231)
|...+..++.. .....+|||+|||+|.++..++.. +.+|+++|+++.+++.++++. ++++++++|+.+...
T Consensus 51 P~~i~~~f~~~-~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~ 123 (279)
T PHA03411 51 PEGLAWDFTID-AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES 123 (279)
T ss_pred CHHHHHHHHhc-cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc
Confidence 45555555432 234579999999999998888763 569999999999999999874 258899999999765
Q ss_pred CCceeEEEeCCcccccChHHH------------------HHHHHHHHhhcCCCcEEEEE
Q 026870 172 TELFDLIFDYTFFCAIEPEMR------------------AAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~~~~~~~------------------~~~l~~~~~~L~pgG~li~~ 212 (231)
...||+|+++..+.+.+..+. .++++....+|+|+|.++++
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 678999999998888654322 45667778899999977655
No 106
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.43 E-value=7.4e-13 Score=100.09 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=78.6
Q ss_pred CCCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeC
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY 181 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~I~~~ 181 (231)
..|+.+|||+|||.|.+...|.+ ++...+|+|++++.+..+.++. +.++++|+.+ .+++++||.|+.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--------v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--------VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--------CCEEECCHHHhHhhCCCCCccEEehH
Confidence 34568999999999999999988 7789999999999999988753 7799999999 5678899999999
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
.++.++. ...++|+++.++ |... ++.|+.
T Consensus 83 qtLQ~~~--~P~~vL~EmlRV---gr~~-IVsFPN 111 (193)
T PF07021_consen 83 QTLQAVR--RPDEVLEEMLRV---GRRA-IVSFPN 111 (193)
T ss_pred hHHHhHh--HHHHHHHHHHHh---cCeE-EEEecC
Confidence 9999984 345677777665 4444 345544
No 107
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.43 E-value=1.3e-12 Score=103.96 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=83.7
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCcee
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD 176 (231)
.++++|||+|||+|+-+..++. .+.+++++|+++++++.|++++...++.++++++.+|+.+.. +.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3468999999999998887765 345999999999999999999999888889999999998832 135899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+|++... .+....++..+.++|+|||++++..
T Consensus 147 ~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9995322 2455678899999999999887744
No 108
>PRK04457 spermidine synthase; Provisional
Probab=99.43 E-value=1.8e-12 Score=104.92 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=83.9
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCc
Q 026870 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~I~~~~~ 183 (231)
++.+|||||||+|..+..+++ ++.+++++|+++++++.|++++...+..++++++.+|..+.. ..++||+|++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 357999999999999998877 566999999999999999998765544568999999987732 2358999997532
Q ss_pred cc-ccChH-HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 184 FC-AIEPE-MRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~-~~~~~-~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
-. ..+.. ....+++.+.++|+|||++++..+..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 11 11111 22689999999999999998865543
No 109
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.43 E-value=1.3e-12 Score=108.57 Aligned_cols=110 Identities=24% Similarity=0.300 Sum_probs=81.7
Q ss_pred CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhcc---------CCCCCceEEEEccCCC-----CCCC
Q 026870 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSS---------LPNAKFVSFLKADFFT-----WCPT 172 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~---------~~~~~~i~~~~~d~~~-----~~~~ 172 (231)
++.+|||+|||.|..+.-....+. .++|+|++...|+.|+++... ....-...|+.+|.+. ..+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 568999999999999888877554 999999999999999998821 1111246788888876 2233
Q ss_pred --CceeEEEeCCccccc--ChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 173 --ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 173 --~~fD~I~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
..||+|-|.+++|+. +.+....+|+.+...|+|||+++..+.+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 489999999999985 445667799999999999999998775443
No 110
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.42 E-value=7.5e-13 Score=103.17 Aligned_cols=108 Identities=23% Similarity=0.246 Sum_probs=80.8
Q ss_pred HHHHHHcCC-CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCC
Q 026870 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPT 172 (231)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~ 172 (231)
...+++... .++.+|||||||+|+.+..|+. +...|+++|..+..++.|++++...+. .++.++.+|.... ...
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccccC
Confidence 455555553 4568999999999999999987 334799999999999999999887643 3799999998873 344
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 173 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.+||.|++......+| ..+.+.|++||+|++..-
T Consensus 140 apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 6899999988877664 347788999999987543
No 111
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.42 E-value=2.4e-12 Score=98.32 Aligned_cols=105 Identities=16% Similarity=0.225 Sum_probs=86.4
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--CCCCCceeEEEeCCcccc
Q 026870 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~fD~I~~~~~~~~ 186 (231)
+.-|||||||+|.-+..+...|+..+|+|+|+.|++.|.+...+ -.++.+|+-+ ++++++||.+++..++.+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQW 124 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAVQW 124 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence 47999999999999999999999999999999999999974322 2578899888 778899999998765544
Q ss_pred c---------ChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026870 187 I---------EPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 187 ~---------~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~ 219 (231)
+ |..-+..|+..+..+|++|++.++..|+.++.
T Consensus 125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~ 166 (270)
T KOG1541|consen 125 LCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA 166 (270)
T ss_pred ecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH
Confidence 3 33445678888999999999999888877643
No 112
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.41 E-value=5.7e-12 Score=94.74 Aligned_cols=101 Identities=23% Similarity=0.206 Sum_probs=86.9
Q ss_pred CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC-ceeEEEeCC
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT 182 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~fD~I~~~~ 182 (231)
..++.+++|||||+|..+..++. +..+|+++|-++++++..++|..+.+ .+++.++.++..+..+.. +||.||...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 45668999999999999999994 66799999999999999999999988 578999999999965444 699999877
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
. -.+ ..+++.+...|+|||+|++-.
T Consensus 111 g-~~i-----~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 111 G-GNI-----EEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred C-CCH-----HHHHHHHHHHcCcCCeEEEEe
Confidence 6 333 578999999999999998744
No 113
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.40 E-value=2.7e-12 Score=99.63 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=78.9
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCc
Q 026870 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~I~~~~~ 183 (231)
++.+|||+|||+|.++..+++ ++.+|+++|+++.+++.+++++...+. .+++++.+|+.+.. ....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 457999999999999998875 457999999999999999999877654 36999999986621 122456665421
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
......+++.+.+.|+|||.+++.....
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 1234678999999999999998877544
No 114
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=5.9e-12 Score=102.63 Aligned_cols=157 Identities=24% Similarity=0.242 Sum_probs=105.7
Q ss_pred cccCCCChhHHHHHHHHhccccccc-------hhhhhccC--CCCCCCCCCcHHHHHHHHc---CCCCCC-cEEEecCCC
Q 026870 53 NDNVIKSHPRVNKLQQLMHIESSGG-------WEKCWEEG--LTPWDIGQPAPIIVHLHQS---GALPKG-RALVPGCGT 119 (231)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~-------w~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~-~vLDiGcG~ 119 (231)
.....++..+.+++.+...++.... ...+|... ..+ ..-.|++....+++. ...... +|||+|||+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~~~f~gl~~~v~~-~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGS 121 (280)
T COG2890 43 HPEAELSEEELERLRELLERRAEGEPVAYILGSAEFGGLRFKVDE-GVLIPRPDTELLVEAALALLLQLDKRILDLGTGS 121 (280)
T ss_pred ccccccCHHHHHHHHHHHHHHHCCCCHhHhhccCeecceeeeeCC-CceecCCchHHHHHHHHHhhhhcCCcEEEecCCh
Confidence 4455667777777777775542211 11222221 111 223345544444443 111122 799999999
Q ss_pred chHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc-----cCh---
Q 026870 120 GYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-----IEP--- 189 (231)
Q Consensus 120 G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~-----~~~--- 189 (231)
|..+..++..+ .+|+++|+|+.+++.|++|...+++ .++.++.+|+++.... +||+|+++..+-- ..+
T Consensus 122 G~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~-~fDlIVsNPPYip~~~~~~~~~~~ 199 (280)
T COG2890 122 GAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG-KFDLIVSNPPYIPAEDPELLPEVV 199 (280)
T ss_pred HHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC-ceeEEEeCCCCCCCcccccChhhh
Confidence 99999999954 4999999999999999999999887 6677888899987655 8999999854321 111
Q ss_pred ---------------HHHHHHHHHHHhhcCCCcEEEEE
Q 026870 190 ---------------EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 190 ---------------~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
+....++..+.+.|+|||.+++.
T Consensus 200 ~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 200 RYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred ccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 13368888999999999977653
No 115
>PTZ00146 fibrillarin; Provisional
Probab=99.38 E-value=6.9e-12 Score=101.49 Aligned_cols=99 Identities=20% Similarity=0.216 Sum_probs=74.6
Q ss_pred CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEE
Q 026870 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~I~ 179 (231)
.++.+|||+|||+|.++..+++. ...|+++|+++++.+...+..... .+|.++..|+..+. +...||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence 35579999999999999999983 248999999998665554443322 36889999987632 235799999
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
+... .+++...++.++.+.|||||.|++.
T Consensus 208 ~Dva----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 208 ADVA----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 8764 2344456677899999999999884
No 116
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.38 E-value=6e-12 Score=101.24 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=78.8
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---CCceeEEEeCCcc
Q 026870 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFF 184 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~fD~I~~~~~~ 184 (231)
.+|||+|||+|.++..+++ ++.+++++|+|+.+++.|+++...++ ++++++|+.+..+ .+.||+|+++..+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence 5899999999999999886 45699999999999999999987653 5789999887432 3579999998654
Q ss_pred c------ccChH------------------HHHHHHHHHHhhcCCCcEEEEEE
Q 026870 185 C------AIEPE------------------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~------~~~~~------------------~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
. .++++ ....+++.+.+.|+|||++++..
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 11221 23578888889999999998754
No 117
>PRK00811 spermidine synthase; Provisional
Probab=99.38 E-value=7.7e-12 Score=102.35 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=82.6
Q ss_pred CCCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCC----CCCceEEEEccCCCCC--CCCceeEE
Q 026870 107 LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWC--PTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~~~--~~~~fD~I 178 (231)
.++.+||++|||.|..+..+++. + .+|+++|+++++++.|++.+.... ..++++++.+|..... ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 34579999999999999999884 4 489999999999999999875421 2468999999998843 35689999
Q ss_pred EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEEE
Q 026870 179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~li~~ 212 (231)
++...-.+.++. ....+++.+.+.|+|||++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 986543332222 2267889999999999998764
No 118
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.37 E-value=6.3e-12 Score=107.06 Aligned_cols=107 Identities=21% Similarity=0.095 Sum_probs=84.6
Q ss_pred CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC-----CCCceeEEEe
Q 026870 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~~~~fD~I~~ 180 (231)
++.+|||+|||+|.++..++..+. +|+++|+++.+++.|++++..+++. ++++++++|+.+.. ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 468999999999999988776555 9999999999999999999888765 47999999998843 2458999998
Q ss_pred CCcccccCh-------HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 181 YTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 181 ~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
......-+. .....++....++|+|||.|+.+.-
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 755432221 1345666778899999999887553
No 119
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.36 E-value=4.1e-12 Score=98.51 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=70.5
Q ss_pred CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCc
Q 026870 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~I~~~~~ 183 (231)
++.+|||+|||+|.++..+++ .+..++|+|+++++++.++++ +++++.+|+.+ ..++++||+|+++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 457999999999999998876 455889999999999988652 36788888876 244568999999999
Q ss_pred ccccChHHHHHHHHHHHhhcCC
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKP 205 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~p 205 (231)
++|+++ ...+++++.+.+++
T Consensus 85 l~~~~d--~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 85 LQATRN--PEEILDEMLRVGRH 104 (194)
T ss_pred hHcCcC--HHHHHHHHHHhCCe
Confidence 999954 45678888776554
No 120
>PLN02476 O-methyltransferase
Probab=99.34 E-value=2.5e-11 Score=98.07 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=85.7
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-------CCcee
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------TELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~fD 176 (231)
.++++|||+|+++|+.++.++. .+.+++++|.+++..+.|++++...++.++++++.+|..+..+ .++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3468999999999999999987 3558999999999999999999999888899999999988321 35899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
+||.-. +......+++.+.++|+|||++++-.-
T Consensus 197 ~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 197 FAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 999432 235667889999999999999877443
No 121
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.34 E-value=4.2e-12 Score=98.39 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=86.8
Q ss_pred CcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CC
Q 026870 94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PT 172 (231)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~ 172 (231)
|...+..+....... ..++|+|||+|..++.+++.-.+|+++|+|+++++.|++............+...++.++. .+
T Consensus 20 Ptdw~~~ia~~~~~h-~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e 98 (261)
T KOG3010|consen 20 PTDWFKKIASRTEGH-RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGE 98 (261)
T ss_pred cHHHHHHHHhhCCCc-ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCC
Confidence 345555555533222 4999999999988888888766999999999999999886543322223445555555533 36
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCc-EEEEEEcc
Q 026870 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG-ELITLMFP 215 (231)
Q Consensus 173 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG-~li~~~~~ 215 (231)
++.|+|+|..++|++ +++.+.+.+.++|++.| .+.+-.|.
T Consensus 99 ~SVDlI~~Aqa~HWF---dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 99 ESVDLITAAQAVHWF---DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred cceeeehhhhhHHhh---chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 799999999999998 45678999999998887 66666665
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.34 E-value=1.5e-11 Score=101.89 Aligned_cols=106 Identities=23% Similarity=0.174 Sum_probs=80.4
Q ss_pred HHHHHcCC-CCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCC
Q 026870 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE 173 (231)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 173 (231)
..+++... .++.+|||+|||+|.++..+++.. ..|+++|+++.+++.|++++...+. +++.++.+|..+.. ...
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccC
Confidence 34444433 345899999999999999998732 3699999999999999998877654 46899999987733 335
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 174 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+||+|++.....+++ ..+.+.|+|||.+++..
T Consensus 149 ~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 799999876554442 34667899999987743
No 123
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.34 E-value=4.4e-12 Score=103.11 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=84.4
Q ss_pred CCcEEEecCCCchHHHHhcC----C------CCeEEEEeCChHHHHHHHHHhccC-------------------------
Q 026870 109 KGRALVPGCGTGYDVVAMAS----P------ERYVVGLEISDIAIKKAEELSSSL------------------------- 153 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~----~------~~~v~~iD~s~~~i~~a~~~~~~~------------------------- 153 (231)
..+|+..||++|.-...+|- . ..+|+|+|+|+.+++.|++.....
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 36999999999976555442 1 248999999999999998752110
Q ss_pred -----CCCCceEEEEccCCCC-C-CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 154 -----PNAKFVSFLKADFFTW-C-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 154 -----~~~~~i~~~~~d~~~~-~-~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
.+...|+|.+.|+.+. . +.+.||+|+|.+++.|++++.+.++++.+.+.|+|||+|++ ..+.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l-G~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA-GHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE-eCcc
Confidence 0224789999999983 2 35789999999999999999999999999999999998755 4433
No 124
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.33 E-value=2.5e-11 Score=94.50 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=88.5
Q ss_pred CCCCcEEEecCCCchHHHHhcC--C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE-ccCCCCCC---CCceeEEE
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFTWCP---TELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-~d~~~~~~---~~~fD~I~ 179 (231)
..+++|||||.+.|+-++.|+. + ..+++.+|++++.++.|++++.+.++.++|..+. +|..+... .++||+||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 3568999999999999999987 3 4589999999999999999999999998899988 58877333 47999999
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
.-. .....+.+++.+.++|+|||++++-..-..+
T Consensus 138 IDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 138 IDA-----DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 322 2355678999999999999998876554443
No 125
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.32 E-value=1.5e-11 Score=94.89 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=76.1
Q ss_pred HHHHHHcC--CCCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---
Q 026870 98 IVHLHQSG--ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--- 169 (231)
Q Consensus 98 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--- 169 (231)
+.++.+.. ..++.+|||+|||+|.++..+++. ..+++++|+++.+ .. .++.++++|+.+.
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~---~~i~~~~~d~~~~~~~ 87 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI---ENVDFIRGDFTDEEVL 87 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC---CCceEEEeeCCChhHH
Confidence 44444433 345689999999999999888763 3479999999864 11 3578888898763
Q ss_pred ------CCCCceeEEEeCCcc--------ccc-ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 170 ------CPTELFDLIFDYTFF--------CAI-EPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 170 ------~~~~~fD~I~~~~~~--------~~~-~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
.+.++||+|++.... .|+ ..+....++..+.++|+|||++++..+..
T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 245679999986432 111 11234688999999999999999876554
No 126
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.32 E-value=2.4e-11 Score=92.13 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=76.5
Q ss_pred HHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeE
Q 026870 100 HLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDL 177 (231)
Q Consensus 100 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~ 177 (231)
.+++... .++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++... ++++++.+|+.+.. +...||.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCE
Confidence 3444443 34479999999999999999998889999999999999999987542 47999999999953 3446999
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
|+++..++ +..+...++++.. .+.++|.+++
T Consensus 81 vi~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~ 111 (169)
T smart00650 81 VVGNLPYN-ISTPILFKLLEEP--PAFRDAVLMV 111 (169)
T ss_pred EEECCCcc-cHHHHHHHHHhcC--CCcceEEEEE
Confidence 99876554 4333333333321 2346676644
No 127
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.32 E-value=7.7e-12 Score=114.05 Aligned_cols=107 Identities=21% Similarity=0.155 Sum_probs=86.6
Q ss_pred CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC--CCCceeEEEeCCc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC--PTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~fD~I~~~~~ 183 (231)
++.+|||+|||+|.+++.++..|. +|+++|+|+.+++.|++++..+++. ++++|+++|+.++. ...+||+|++...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 468999999999999999999776 7999999999999999999888775 57999999998743 2458999998643
Q ss_pred ccccC---------hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 184 FCAIE---------PEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 184 ~~~~~---------~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
..--. ......++..+.++|+|||.|++.+-
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 21100 13456788899999999999987654
No 128
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.31 E-value=9.3e-12 Score=96.76 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=84.0
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCcee
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD 176 (231)
..+++||||||++|+-++.+++ .+.+++.+|.+++..+.|++++...++.++|+++.+|..+.. ..++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3458999999999999999997 467999999999999999999998888889999999998732 135899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
+||.-.. ......++..+.++|+|||++++-..
T Consensus 124 ~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 124 FVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEEccc-----ccchhhHHHHHhhhccCCeEEEEccc
Confidence 9995432 34556788899999999998877543
No 129
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=2.8e-11 Score=105.15 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=86.6
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC-
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT- 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~- 182 (231)
.++.+|||+|||+|..+..+++ .+.+|+++|+++.+++.+++++...++. +++++.+|..+..+..+||.|++..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEEEEcCC
Confidence 4568999999999998887775 3459999999999999999999877653 6899999998866667899999631
Q ss_pred -----ccc-------ccChH-------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 183 -----FFC-------AIEPE-------MRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 183 -----~~~-------~~~~~-------~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
++. +.+++ ...++|..+.+.|+|||+|++.+.+..
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 12222 235789999999999999999886654
No 130
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.30 E-value=1.8e-11 Score=94.74 Aligned_cols=103 Identities=25% Similarity=0.294 Sum_probs=79.6
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEeCCc
Q 026870 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF 183 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~I~~~~~ 183 (231)
..+||||||.|.++..+|. ++.+++|+|+....+..+.++....++ .|+.++++|+.. .++++++|.|+..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 4999999999999999998 778999999999999999887766544 579999999988 456689999997655
Q ss_pred ccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026870 184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 184 ~~~~~~~------~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
-.|.-.. ....++..+.++|+|||.|.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 4433211 12689999999999999998865
No 131
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.30 E-value=4.4e-11 Score=92.61 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=80.1
Q ss_pred CCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~I~~~~~ 183 (231)
.++.+|||+|||+|.+++.++.++ .+|+++|.++.+++.+++++...+.. ++.++++|+.+.. ....||+|++...
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 345799999999999998755544 59999999999999999998877643 6999999998733 2346999998766
Q ss_pred ccccChHHHHHHHHHHHh--hcCCCcEEEEEEccC
Q 026870 184 FCAIEPEMRAAWAQKIKD--FLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~--~L~pgG~li~~~~~~ 216 (231)
+.. .....+++.+.. .|+|++++++.+...
T Consensus 131 y~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 131 FRK---GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCC---ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 432 233445565655 379999888776553
No 132
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.28 E-value=4.1e-11 Score=96.30 Aligned_cols=103 Identities=22% Similarity=0.252 Sum_probs=84.0
Q ss_pred CCcEEEecCCCchHHHHhc----C-------CCCeEEEEeCChHHHHHHHHHhcc-----CC------------------
Q 026870 109 KGRALVPGCGTGYDVVAMA----S-------PERYVVGLEISDIAIKKAEELSSS-----LP------------------ 154 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~----~-------~~~~v~~iD~s~~~i~~a~~~~~~-----~~------------------ 154 (231)
.-+|+.+||++|.-...+| + ...+|+|+|+|..+++.|+.-... .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5799999999996654443 2 135899999999999999764333 11
Q ss_pred -----CCCceEEEEccCCCCC-CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 155 -----NAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 155 -----~~~~i~~~~~d~~~~~-~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
+...|.|...|+.+.. ..+.||+|+|.+|+.+++.+.+.+++..++..|+|||+|++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 1236899999999954 66789999999999999999999999999999999998866
No 133
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=7.8e-11 Score=101.88 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=83.2
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEe
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD 180 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~I~~ 180 (231)
..++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.+++++...+. +++++++|..+.. ..++||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEE
Confidence 3456899999999999999998743 5899999999999999999987764 3689999998742 3468999995
Q ss_pred CCccc------c-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 181 YTFFC------A-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ~~~~~------~-------~~~-------~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
..... + ..+ ....++++.+.+.|+|||+|++.+.+
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 43211 1 111 12357899999999999999877643
No 134
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=5.7e-11 Score=92.12 Aligned_cols=131 Identities=22% Similarity=0.385 Sum_probs=87.1
Q ss_pred cchhhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccC
Q 026870 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSL 153 (231)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~ 153 (231)
..++.+|+....+ ....+.+..+ +.....+..+|||||.+|.++..+++ .+. .++|+|+++..|+.|+++..-.
T Consensus 30 GNf~~YY~~r~~~---~~~D~rLk~L-~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 30 GNFDNYYGFRLNP---GDSDPRLKVL-EKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CCccchhhcccCC---CCCChhhhhc-cccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 3455555554332 2223333333 44455668999999999999999999 444 7999999999999999976532
Q ss_pred C----------------------------------CCCceEEE-------EccCCCCCCCCceeEEEeCCc--cccc--C
Q 026870 154 P----------------------------------NAKFVSFL-------KADFFTWCPTELFDLIFDYTF--FCAI--E 188 (231)
Q Consensus 154 ~----------------------------------~~~~i~~~-------~~d~~~~~~~~~fD~I~~~~~--~~~~--~ 188 (231)
- ..+++.|. ..|+.+ .....||+|+|..+ +.|+ .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~-~~~~~fDiIlcLSiTkWIHLNwg 184 (288)
T KOG2899|consen 106 CDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLD-MIQPEFDIILCLSITKWIHLNWG 184 (288)
T ss_pred ccccccccCCCccccccccccccccccccccccccCCcchhcccccEEEecchhhh-hccccccEEEEEEeeeeEecccc
Confidence 1 00111121 122221 12347999999765 3333 3
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEE
Q 026870 189 PEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
++-+..+++++.++|.|||+|++
T Consensus 185 D~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 185 DDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cHHHHHHHHHHHHhhCcCcEEEE
Confidence 57788999999999999999977
No 135
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.27 E-value=6.4e-11 Score=102.42 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=85.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEe
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD 180 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~I~~ 180 (231)
..++.+|||+|||+|..+..+++ ...+++++|+++.+++.+++++.+.+...++.+..+|..... ...+||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 34568999999999999998887 235899999999999999999988765534555777776532 3568999996
Q ss_pred C------CcccccCh--------------HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 181 Y------TFFCAIEP--------------EMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 181 ~------~~~~~~~~--------------~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
. .++.+.++ ..+.++|..+.++|||||.|++.+.+..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 3 23433221 1246899999999999999998876553
No 136
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.26 E-value=2e-11 Score=98.28 Aligned_cols=120 Identities=20% Similarity=0.248 Sum_probs=90.9
Q ss_pred CcHHHHHHH-HcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCC-----CCCceEEEEccC
Q 026870 94 PAPIIVHLH-QSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP-----NAKFVSFLKADF 166 (231)
Q Consensus 94 ~~~~~~~~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~-----~~~~i~~~~~d~ 166 (231)
.+.+++..+ .....+...++|+|||.|..++..-+.|. .++|+|+.+..|+.|+++...-. ..-.+.|+.+|.
T Consensus 102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 355555433 33355668999999999999999888776 89999999999999998765321 112478999998
Q ss_pred CC-----CC--CCCceeEEEeCCccccc--ChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 167 FT-----WC--PTELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 167 ~~-----~~--~~~~fD~I~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+. .. ++.+||+|=|.+++|+- +.+...-+|+.+..+|+|||+++-..
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 77 11 23349999999999874 44666789999999999999986543
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=99.26 E-value=1.2e-10 Score=91.37 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=75.1
Q ss_pred CCCcEEEecCCCchHHHHhcC-----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026870 108 PKGRALVPGCGTGYDVVAMAS-----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~-----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~ 182 (231)
.+.+|||+|||+|.++..+++ ...+|+++|+++.+++.|+++.. ++.++.+|+......++||+|+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 467999999999999998875 24589999999999999998752 4789999998754456899999987
Q ss_pred cccccCh----------HHHHHHHHHHHhhcCCCcEEEE
Q 026870 183 FFCAIEP----------EMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 183 ~~~~~~~----------~~~~~~l~~~~~~L~pgG~li~ 211 (231)
.+.-... ....++++...+++++|+ +++
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 6653221 234668888888666666 444
No 138
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.25 E-value=3.5e-11 Score=90.40 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=68.3
Q ss_pred EEEeCChHHHHHHHHHhccC--CCCCceEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026870 134 VGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 134 ~~iD~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
+|+|+|+.+++.|+++.... +...+++|+++|+.+ +.++++||+|++..++++++ +..++++++.++|||||.|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence 48999999999998765422 122469999999998 45567899999999999984 56789999999999999999
Q ss_pred EEEccCC
Q 026870 211 TLMFPIS 217 (231)
Q Consensus 211 ~~~~~~~ 217 (231)
+.++...
T Consensus 79 i~d~~~~ 85 (160)
T PLN02232 79 ILDFNKS 85 (160)
T ss_pred EEECCCC
Confidence 9999764
No 139
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.25 E-value=7.8e-11 Score=98.01 Aligned_cols=105 Identities=23% Similarity=0.169 Sum_probs=81.0
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCcc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~I~~~~~~ 184 (231)
.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...+++ ++++|+++|+.+.. ..+.||+|++...-
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 3468999999999999999999889999999999999999999987766 57999999998743 23479999976432
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
.-+. ..++ .+...++|++++|+.+-+..
T Consensus 251 ~G~~----~~~~-~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 251 RGIG----KELC-DYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred CCcc----HHHH-HHHHHcCCCeEEEEECCccc
Confidence 2121 2233 33444788999988776554
No 140
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.25 E-value=5.1e-11 Score=95.07 Aligned_cols=101 Identities=16% Similarity=0.190 Sum_probs=84.3
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--------CCce
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------TELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~f 175 (231)
.+.++|||||+++|+-++.++. .+.+++.+|.+++..+.|++++...++.++|+++.++..+..+ .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 3457999999999999998886 4569999999999999999999998888999999999888321 2589
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
|+||.-.- ......++..+.++|+|||++++-
T Consensus 158 D~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99994322 345577888999999999998764
No 141
>PLN02366 spermidine synthase
Probab=99.25 E-value=1.3e-10 Score=95.74 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=81.1
Q ss_pred CCCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC---CCCceeEE
Q 026870 107 LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC---PTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~---~~~~fD~I 178 (231)
.++++||++|||.|..+..+++. + .+|+.+|+++++++.+++.+.... .+++++++.+|..+.. +.+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 34589999999999999999883 3 489999999999999999875421 2358999999987632 24689999
Q ss_pred EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEE
Q 026870 179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~li~ 211 (231)
++...-.+.+.. ....+++.+.++|+|||++++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 986543332221 235789999999999999865
No 142
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.1e-10 Score=91.71 Aligned_cols=100 Identities=26% Similarity=0.268 Sum_probs=86.0
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~ 182 (231)
..|+.+|||.|.|+|.++..|+. +-.+|+.+|+.+..++.|++|+...++.+++++..+|+.+...++.||.|+
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~--- 168 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF--- 168 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEE---
Confidence 45678999999999999999996 335899999999999999999998888788999999999966666999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
++-++.-.+++.+.+.|+|||.+++.
T Consensus 169 ----LDmp~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 169 ----LDLPDPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred ----EcCCChHHHHHHHHHHhCCCcEEEEE
Confidence 44445567899999999999987653
No 143
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=1.2e-10 Score=100.53 Aligned_cols=111 Identities=18% Similarity=0.163 Sum_probs=85.9
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEe
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD 180 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~I~~ 180 (231)
..++.+|||+|||+|..+..++. .+.+|+++|+++..++.+++++.+.++. +++++.+|...+. ..++||.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEE
Confidence 34567999999999999988877 3569999999999999999999887654 5899999988743 3467999997
Q ss_pred CCc------ccc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 181 YTF------FCA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 181 ~~~------~~~-------~~~-------~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
... +.. .++ ....++|..+.+.|||||+|+..+-+..
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 422 111 111 1346789999999999999988776544
No 144
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.23 E-value=5.8e-11 Score=90.28 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=74.2
Q ss_pred CCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCCC-----CCCCcee
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTW-----CPTELFD 176 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~-----~~~~~fD 176 (231)
..++.+|||+|||+|..++.++.. +.+|+.+|.++ .++.++.++..+. ...++.+...|+.+. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 445689999999999999999987 56999999998 9999999988765 456789999988772 2345899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+|++..+++. ++..+.+++.+.++|+|+|.+++..
T Consensus 122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999999875 3677889999999999999965544
No 145
>PLN02672 methionine S-methyltransferase
Probab=99.23 E-value=9.5e-11 Score=109.54 Aligned_cols=123 Identities=22% Similarity=0.213 Sum_probs=89.5
Q ss_pred CCCCCcHHHHHHHHcC---C---CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCC------
Q 026870 90 DIGQPAPIIVHLHQSG---A---LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPN------ 155 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~---~---~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~------ 155 (231)
....|++..+.+++.. . .++.+|||+|||+|..++.+++. ..+|+++|+|+.+++.|++|...+++
T Consensus 94 ~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~ 173 (1082)
T PLN02672 94 SIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLP 173 (1082)
T ss_pred CcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccc
Confidence 3455666655555432 1 12358999999999999999873 45999999999999999999876432
Q ss_pred ---------CCceEEEEccCCCCCCC--CceeEEEeCCccc------ccCh-----------------------------
Q 026870 156 ---------AKFVSFLKADFFTWCPT--ELFDLIFDYTFFC------AIEP----------------------------- 189 (231)
Q Consensus 156 ---------~~~i~~~~~d~~~~~~~--~~fD~I~~~~~~~------~~~~----------------------------- 189 (231)
.++++|+++|+.+.... ..||+|+++..+. .+++
T Consensus 174 ~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 174 VYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 24799999999986543 3699999975422 1111
Q ss_pred -HHHHHHHHHHHhhcCCCcEEEEE
Q 026870 190 -EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 190 -~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
....+++....+.|+|||.+++.
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEE
Confidence 12257788888999999988753
No 146
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.23 E-value=1.3e-10 Score=94.54 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=79.6
Q ss_pred CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC--CCCceeEEEe
Q 026870 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC--PTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~~fD~I~~ 180 (231)
.+.+||++|||+|..+..+++. ..+++++|+++++++.+++.+.... ..++++++.+|..+.. ..++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3469999999999999888774 3589999999999999998764321 1247888888887632 2468999998
Q ss_pred CCcccccChHH--HHHHHHHHHhhcCCCcEEEEE
Q 026870 181 YTFFCAIEPEM--RAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 181 ~~~~~~~~~~~--~~~~l~~~~~~L~pgG~li~~ 212 (231)
......-+... ...+++.+.+.|+|||++++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 65432222222 367889999999999998875
No 147
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.21 E-value=1.8e-10 Score=93.47 Aligned_cols=111 Identities=19% Similarity=0.114 Sum_probs=83.9
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeC
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDY 181 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~I~~~ 181 (231)
..++.+|||+|||+|..+..++. ....|+++|+++.+++.+++++...+.. ++.++..|..... ..+.||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEEEc
Confidence 34568999999999999988876 2348999999999999999999887653 5899999987632 33469999964
Q ss_pred Cc------ccc-------cChH-------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 182 TF------FCA-------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 182 ~~------~~~-------~~~~-------~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
.. +.+ ..++ ...++|+.+.+.|||||+|+..+-+..
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 21 111 1111 235799999999999999988765443
No 148
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=2.1e-10 Score=99.39 Aligned_cols=109 Identities=20% Similarity=0.183 Sum_probs=85.0
Q ss_pred CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEE
Q 026870 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~I 178 (231)
.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++++...+.. +++++.+|..+.. ..+.||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCEE
Confidence 45689999999999999988872 348999999999999999999887764 5999999988743 24589999
Q ss_pred EeC------CcccccCh-------H-------HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 179 FDY------TFFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 179 ~~~------~~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
++. .++.+-++ + .+.++|..+.+.|||||+|+..+.+.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 963 23332221 1 24688999999999999998776443
No 149
>PRK01581 speE spermidine synthase; Validated
Probab=99.20 E-value=2.4e-10 Score=95.09 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=79.9
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHH--hc---cCC-CCCceEEEEccCCCCC--CCCce
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEEL--SS---SLP-NAKFVSFLKADFFTWC--PTELF 175 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~--~~---~~~-~~~~i~~~~~d~~~~~--~~~~f 175 (231)
...+.+||++|||.|..+..+++.. .+|+.+|+++++++.|++. +. ... ..++++++.+|..++. ..+.|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3445899999999999999888833 5999999999999999972 11 111 2468999999999843 34589
Q ss_pred eEEEeCCccc---ccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 176 DLIFDYTFFC---AIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 176 D~I~~~~~~~---~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
|+|++...-. ....-....+++.+.+.|+|||++++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999874321 111122367899999999999998764
No 150
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.20 E-value=1.2e-10 Score=91.66 Aligned_cols=103 Identities=24% Similarity=0.196 Sum_probs=85.1
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEeCCc
Q 026870 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF 183 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~I~~~~~ 183 (231)
..+||||||.|.++..+|+ +...++|||+....+..|.+.+.+.++. |+.++++|+.. ..++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5999999999999999998 5669999999999999999988887754 79999999988 345559999997765
Q ss_pred ccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026870 184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 184 ~~~~~~~------~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
-.|.-.. ....+++.+.+.|+|||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 4442111 22689999999999999998865
No 151
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.20 E-value=2e-10 Score=99.87 Aligned_cols=102 Identities=23% Similarity=0.195 Sum_probs=79.8
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCC
Q 026870 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT 182 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~I~~~~ 182 (231)
++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++...++. .+++|+.+|+.+.. ...+||+|++..
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 457999999999999999999888999999999999999999877654 36999999997632 235799999654
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
...-+ ...++.+.+ ++|++++++++-+.
T Consensus 376 Pr~g~-----~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 376 PRAGA-----AEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred CCcCh-----HHHHHHHHh-cCCCeEEEEEeChH
Confidence 43322 234555544 69999999987543
No 152
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.19 E-value=7.2e-11 Score=96.53 Aligned_cols=104 Identities=21% Similarity=0.195 Sum_probs=85.7
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCc
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~ 183 (231)
...++.|||+|||+|.++++.|+.|+ +|+++|.|.-+ +.|.+.+..+++.+.|+++++.+++ ..|.+..|+|++-+.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 35678999999999999999999988 99999997766 9999999988888889999999999 344578999999876
Q ss_pred ccccC-hHHHHHHHHHHHhhcCCCcEEE
Q 026870 184 FCAIE-PEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 184 ~~~~~-~~~~~~~l~~~~~~L~pgG~li 210 (231)
-+.+- ...+..+|-.=-+.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 55442 2344555666668999999875
No 153
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.7e-10 Score=99.14 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=83.1
Q ss_pred CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeC
Q 026870 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~I~~~ 181 (231)
.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++++...+.. +++++++|+.+... .+.||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence 34579999999999999998872 459999999999999999999887764 49999999987431 2679999975
Q ss_pred Ccc------ccc-------ChH-------HHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 182 TFF------CAI-------EPE-------MRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 182 ~~~------~~~-------~~~-------~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
... .+- ++. ....+|+.+.++|+|||.|+..+-+
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 321 111 111 1356899999999999999865543
No 154
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=4.6e-10 Score=86.50 Aligned_cols=106 Identities=11% Similarity=-0.049 Sum_probs=79.1
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CC-CceeEEEe
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PT-ELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~-~~fD~I~~ 180 (231)
..+.+|||++||+|.++..++++|. +|+++|.++.+++.+++++...+..++++++++|+.+.. .. ..||+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4568999999999999999999887 899999999999999999888776667999999996631 12 24888886
Q ss_pred CCcccccChHHHHHHHHHHH--hhcCCCcEEEEEEccC
Q 026870 181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI 216 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~li~~~~~~ 216 (231)
...+.. ......+..+. ..|+++|.+++ ++..
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~-E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIVV-EEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEEE-EecC
Confidence 555432 12234444443 36888886655 4444
No 155
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.18 E-value=1.5e-10 Score=98.33 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=81.1
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCCcc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~I~~~~~~ 184 (231)
.++.+|||+|||+|.+++.++..+..|+++|+++.+++.|+++...++.. +++|+.+|+.+... ...||+|+.....
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 34579999999999999999998889999999999999999999877653 79999999977432 2469999976554
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
..+. ..+++.+. .++|++++|+.+-+
T Consensus 311 ~G~~----~~~l~~l~-~~~p~~ivyvsc~p 336 (374)
T TIGR02085 311 RGIG----KELCDYLS-QMAPKFILYSSCNA 336 (374)
T ss_pred CCCc----HHHHHHHH-hcCCCeEEEEEeCH
Confidence 3332 33445554 47999999998754
No 156
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.18 E-value=2.6e-10 Score=87.48 Aligned_cols=103 Identities=20% Similarity=0.106 Sum_probs=80.5
Q ss_pred cEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----C-----CCCceeEEE
Q 026870 111 RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----C-----PTELFDLIF 179 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~-----~~~~fD~I~ 179 (231)
+|||||||+|..+..+++ +.....-.|+++.............+..+-..-+..|+... . ....||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999998 66788899999998766666544443322123455666552 1 245899999
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
|.+++|-++.+....+++...++|++||.|++..
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 9999999988889999999999999999987743
No 157
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=1.3e-09 Score=86.08 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=82.4
Q ss_pred CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----C--CCCCceeEE
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----W--CPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~--~~~~~fD~I 178 (231)
..+..+||+|||+|..+..++. +...|+++|.|+.++..|.+|++++.+.+++.+++.++.. . ...+++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3445899999999999999988 5558999999999999999999999888899988665555 2 345789999
Q ss_pred EeCCcccccCh------------------------HHHHHHHHHHHhhcCCCcEEEEE
Q 026870 179 FDYTFFCAIEP------------------------EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 179 ~~~~~~~~~~~------------------------~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
+|+..+..-++ +....++.-..+.|+|||.+.+.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 99865432111 12256777788999999977553
No 158
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.16 E-value=9.3e-12 Score=95.73 Aligned_cols=113 Identities=21% Similarity=0.240 Sum_probs=84.9
Q ss_pred HHHHHHHcCCCCC-CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCC
Q 026870 97 IIVHLHQSGALPK-GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT 172 (231)
Q Consensus 97 ~~~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~ 172 (231)
.+.+++......+ .++||+|||+|.....+.....+++|+|+|+.|+++|.++-.-. +..+.++.. ....
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD------~L~~Aea~~Fl~~~~~ 186 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYD------TLYVAEAVLFLEDLTQ 186 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchH------HHHHHHHHHHhhhccC
Confidence 3445555443332 79999999999999999887789999999999999998753211 233444433 2345
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 173 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
+.||+|.+..|+.++ -.+..++......|+|||.+.++.=...
T Consensus 187 er~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~ 229 (287)
T COG4976 187 ERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLP 229 (287)
T ss_pred CcccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccC
Confidence 689999999999998 5677889999999999999877654443
No 159
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.14 E-value=2.2e-10 Score=98.97 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=78.6
Q ss_pred CCcEEEecCCCchHHHHhcCCC------CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026870 109 KGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~------~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~ 182 (231)
+..|+|+|||+|-++...++.+ .+|+++|-++.++...++++..+++.++|+++++|+.+...+..+|+|++-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 4689999999999987776643 4999999999999888887677777789999999999987777999999965
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEE
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
.-.....+.....|....+.|||||+++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5444444555667888889999999875
No 160
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.5e-10 Score=84.34 Aligned_cols=77 Identities=25% Similarity=0.237 Sum_probs=65.5
Q ss_pred CCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026870 105 GALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 105 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~ 183 (231)
..+.+..|+|+|||+|.+++..+-.|. .|+++|+++++++.+++|..+ +..++.|+.+|+.+.. ..+|.++.+..
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimNPP 117 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMNPP 117 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEECCC
Confidence 356677899999999999999999886 999999999999999999987 3467999999999865 46788887755
Q ss_pred cc
Q 026870 184 FC 185 (231)
Q Consensus 184 ~~ 185 (231)
|.
T Consensus 118 FG 119 (198)
T COG2263 118 FG 119 (198)
T ss_pred Cc
Confidence 43
No 161
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.14 E-value=9.8e-10 Score=90.37 Aligned_cols=122 Identities=18% Similarity=0.144 Sum_probs=95.2
Q ss_pred CCCcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCC
Q 026870 92 GQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT 168 (231)
Q Consensus 92 ~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~ 168 (231)
....|.+.+.+-+. ..++..|||..||||.++....-.|.+++|+|++..++.-++.|+..++..+ ..+... |+..
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~ 257 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN 257 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc
Confidence 33467777766655 3456799999999999999999999999999999999999999998876543 444554 8888
Q ss_pred -CCCCCceeEEEeCCcccccC-------hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 169 -WCPTELFDLIFDYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 169 -~~~~~~fD~I~~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
+++..++|.|++-..+.--+ ++...++++.+.++|++||++++...
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 55555799999865443221 24568899999999999998877554
No 162
>PRK03612 spermidine synthase; Provisional
Probab=99.13 E-value=3.3e-10 Score=100.18 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=80.0
Q ss_pred CCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHh--ccC---C-CCCceEEEEccCCCCC--CCCceeE
Q 026870 108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELS--SSL---P-NAKFVSFLKADFFTWC--PTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~--~~~---~-~~~~i~~~~~d~~~~~--~~~~fD~ 177 (231)
++++|||+|||+|..+..+++. + .+++++|+++++++.++++. ... . .+++++++.+|..+.. ..++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 4579999999999999998884 3 59999999999999999842 211 1 1358999999998832 3468999
Q ss_pred EEeCCcccccCh---HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 178 IFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 178 I~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
|++.......+. -...++++.+.+.|+|||++++..
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 998754332211 112468899999999999987743
No 163
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.12 E-value=2e-09 Score=79.03 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=94.8
Q ss_pred HHHHHHcCCCC-CCcEEEecCCCchHHHHhcCCCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---
Q 026870 98 IVHLHQSGALP-KGRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--- 170 (231)
Q Consensus 98 ~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 170 (231)
.+++....... +.-|||+|.|+|.++..++++|. .++++|+|+..+....+... .+.++.+|.++..
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l 110 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHH
Confidence 34444443333 46999999999999999999664 79999999999999888774 3668999998832
Q ss_pred ---CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 171 ---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 171 ---~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
....||.|+|...+-.+|...+.++|+.+...|.+||.|+..+|.+-.
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~s 161 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPLS 161 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Confidence 345799999998888888888999999999999999999999998543
No 164
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.12 E-value=4e-10 Score=87.09 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=77.6
Q ss_pred HHHHHHcCCCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026870 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f 175 (231)
-.++... ..++..|+|+.||-|.+++.+++ .+..|+++|++|.+++.+++++..+++.+++..+++|..+..+...|
T Consensus 92 r~Ri~~~-v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~ 170 (200)
T PF02475_consen 92 RRRIANL-VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKF 170 (200)
T ss_dssp HHHHHTC---TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-E
T ss_pred HHHHHhc-CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCcccc
Confidence 3444443 45678999999999999999998 77799999999999999999999998888899999999997667899
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
|-|++...-. ...+|..+..++++||++.
T Consensus 171 drvim~lp~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TSS------GGGGHHHHHHHEEEEEEEE
T ss_pred CEEEECChHH------HHHHHHHHHHHhcCCcEEE
Confidence 9998644321 1247888999999999774
No 165
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.09 E-value=9.3e-10 Score=90.92 Aligned_cols=79 Identities=20% Similarity=0.092 Sum_probs=62.6
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEE-ccCCC---C--CCCCceeEEE
Q 026870 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLK-ADFFT---W--CPTELFDLIF 179 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~-~d~~~---~--~~~~~fD~I~ 179 (231)
+.++||||||+|.....++. .+.+++|+|+++.+++.|++++..+ ++.++|.+.. .+..+ . .+.+.||+|+
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 47999999999977777665 5779999999999999999999988 5777888864 33322 1 2356899999
Q ss_pred eCCccccc
Q 026870 180 DYTFFCAI 187 (231)
Q Consensus 180 ~~~~~~~~ 187 (231)
|+..|+--
T Consensus 195 cNPPf~~s 202 (321)
T PRK11727 195 CNPPFHAS 202 (321)
T ss_pred eCCCCcCc
Confidence 99887643
No 166
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.09 E-value=3e-10 Score=86.94 Aligned_cols=108 Identities=23% Similarity=0.171 Sum_probs=80.4
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEe
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~I~~ 180 (231)
.++.++||+.||+|..++..+++|+ +|+.+|.+++++...++|+...+..+++.++..|..... ....||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5678999999999999999999997 999999999999999999988777677999999977622 4578999997
Q ss_pred CCcccccChHHHHHHHHHHH--hhcCCCcEEEEEEccC
Q 026870 181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI 216 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~li~~~~~~ 216 (231)
...+..- .....++..+. ..|+++|.+++.+...
T Consensus 121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKG--LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 6554432 11366777776 7899999886655444
No 167
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.09 E-value=7.8e-10 Score=93.37 Aligned_cols=107 Identities=24% Similarity=0.180 Sum_probs=88.0
Q ss_pred CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC-----CCCceeEEEe
Q 026870 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~~~~fD~I~~ 180 (231)
.+++|||+.|=||.++...+..|+ +|+++|.|..+++.|++|+..+++. +++.|+++|++++. ...+||+|+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 378999999999999999999998 9999999999999999999988864 56899999999943 2348999996
Q ss_pred CCc-ccccC------hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 181 YTF-FCAIE------PEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 181 ~~~-~~~~~------~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
-.. |..-. ..+...++..+.+.|+|||.+++++-
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 422 21110 13557889999999999999988663
No 168
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.09 E-value=4.1e-10 Score=89.68 Aligned_cols=108 Identities=22% Similarity=0.150 Sum_probs=80.2
Q ss_pred HHHHHHcC-CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCC-
Q 026870 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCP- 171 (231)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~- 171 (231)
+..++... ..|+.+|||.|.|+|.++..|++ +..+|+..|+.++.++.|++++...++.+++++.+.|+.+ -+.
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 34444444 45678999999999999999997 5569999999999999999999999888899999999975 332
Q ss_pred --CCceeEEEeCCcccccChHHHHHHHHHHHhhc-CCCcEEEEE
Q 026870 172 --TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITL 212 (231)
Q Consensus 172 --~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~li~~ 212 (231)
+..+|.|+.-.. +.-.++..+.++| +|||++++.
T Consensus 109 ~~~~~~DavfLDlp-------~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 109 ELESDFDAVFLDLP-------DPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp T-TTSEEEEEEESS-------SGGGGHHHHHHHE-EEEEEEEEE
T ss_pred cccCcccEEEEeCC-------CHHHHHHHHHHHHhcCCceEEEE
Confidence 357999994322 2224678899999 899988654
No 169
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.08 E-value=1.1e-09 Score=88.84 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=82.3
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
...++.|||+|||+|.++.+.+..|+ +|+++|-| ++.++|++....+.+.++|.++.+-+++...++..|+|++-..-
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 45678999999999999999999887 99999984 57899999998888889999999999997666789999986442
Q ss_pred c-ccChHHHHHHHHHHHhhcCCCcEEE
Q 026870 185 C-AIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 185 ~-~~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
. .+....++.++. .++.|+|.|..+
T Consensus 254 ~mL~NERMLEsYl~-Ark~l~P~GkMf 279 (517)
T KOG1500|consen 254 YMLVNERMLESYLH-ARKWLKPNGKMF 279 (517)
T ss_pred hhhhhHHHHHHHHH-HHhhcCCCCccc
Confidence 2 233333344433 458999999763
No 170
>PRK04148 hypothetical protein; Provisional
Probab=99.06 E-value=5.4e-09 Score=75.11 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=71.8
Q ss_pred CCCcEEEecCCCch-HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCcc
Q 026870 108 PKGRALVPGCGTGY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~G~-~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~I~~~~~~ 184 (231)
++.+|||+|||.|. ++..|++.|..|+++|+++.+++.++++. ++++.+|++++... ..+|+|++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~~y~~a~liysirp- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLEIYKNAKLIYSIRP- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHHHHhcCCEEEEeCC-
Confidence 34789999999996 88899999999999999999999998764 68999999996543 57999996433
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
+.+....+.++++. -|.-|++...+.+.
T Consensus 87 ----p~el~~~~~~la~~--~~~~~~i~~l~~e~ 114 (134)
T PRK04148 87 ----PRDLQPFILELAKK--INVPLIIKPLSGEE 114 (134)
T ss_pred ----CHHHHHHHHHHHHH--cCCCEEEEcCCCCC
Confidence 23333344444443 35567777776654
No 171
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.05 E-value=1.5e-09 Score=88.94 Aligned_cols=100 Identities=19% Similarity=0.147 Sum_probs=87.7
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccCh
Q 026870 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP 189 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~ 189 (231)
...+|+|.|.|+.+..++..-.++-+++++...+..+.+... .+ |+.+-+|.+.-.|. -|+|+..+++||+++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P~--~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTPK--GDAIWMKWILHDWTD 251 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCCC--cCeEEEEeecccCCh
Confidence 699999999999999999855579999999888888877764 32 88889999986554 469999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 190 EMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 190 ~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
++..++|++|...|+|||.+++.+...
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 999999999999999999999998844
No 172
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.05 E-value=4.4e-09 Score=84.22 Aligned_cols=110 Identities=18% Similarity=0.137 Sum_probs=91.9
Q ss_pred CCCcEEEecCCCchHHHHhcC--CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---C-CCceeEEE
Q 026870 108 PKGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---P-TELFDLIF 179 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~-~~~fD~I~ 179 (231)
.+-+||||.||.|+..+..+. +. ..+...|+++..++..++...+.++.+-++|.++|+++.. . .-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 346999999999999988876 22 4899999999999999999999888877799999999931 1 23579999
Q ss_pred eCCcccccChHH-HHHHHHHHHhhcCCCcEEEEEE--ccCC
Q 026870 180 DYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLM--FPIS 217 (231)
Q Consensus 180 ~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~li~~~--~~~~ 217 (231)
.+..++.+++.+ ....+..+.+++.|||+|+... |.|.
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 999999998855 5667999999999999998866 5554
No 173
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.03 E-value=2.2e-09 Score=93.16 Aligned_cols=101 Identities=20% Similarity=0.163 Sum_probs=77.7
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCC
Q 026870 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT 182 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~I~~~~ 182 (231)
++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++..++. .+++|+.+|+.+.. ....||+|+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 347999999999999999999878999999999999999999877664 47999999987632 234799999543
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.-.-+. ..+++.+. .++|++.+|+.+-
T Consensus 371 Pr~G~~----~~~l~~l~-~l~~~~ivyvsc~ 397 (431)
T TIGR00479 371 PRKGCA----AEVLRTII-ELKPERIVYVSCN 397 (431)
T ss_pred CCCCCC----HHHHHHHH-hcCCCEEEEEcCC
Confidence 322221 34555554 3789998887653
No 174
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.02 E-value=7.9e-10 Score=89.86 Aligned_cols=110 Identities=25% Similarity=0.183 Sum_probs=82.4
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC----CCCceeEEEe
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC----PTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~fD~I~~ 180 (231)
..+++|||+.|=+|.++...+..|+ +|+.+|.|..+++.+++|+..+++. .+++|++.|+++.. ..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3468999999999999999988887 8999999999999999999988765 57999999999832 3468999997
Q ss_pred CCc-ccc--cC-hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 181 YTF-FCA--IE-PEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 181 ~~~-~~~--~~-~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
-.. |.. .. ..+..+++..+.++|+|||.|+++.-++
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 422 211 00 1456788999999999999988766544
No 175
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.00 E-value=3.7e-09 Score=87.52 Aligned_cols=114 Identities=17% Similarity=0.044 Sum_probs=95.1
Q ss_pred HHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-Ccee
Q 026870 99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFD 176 (231)
Q Consensus 99 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD 176 (231)
.+++.. ..++.+|+|..+|-|.+++.+++.|.. |+++|++|.+++.+++++..+++.+.+..+++|..+..+. +.||
T Consensus 180 ~Rva~~-v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 180 ARVAEL-VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred HHHHhh-hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCC
Confidence 334433 344789999999999999999998874 9999999999999999999998888899999999996655 7899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~ 219 (231)
-|+..... ....++....+.+++||.+.+.++.++..
T Consensus 259 rIim~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 259 RIIMGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred EEEeCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 99954432 22457888889999999999999988765
No 176
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.99 E-value=1.2e-09 Score=83.63 Aligned_cols=116 Identities=14% Similarity=0.156 Sum_probs=70.9
Q ss_pred hhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCc
Q 026870 79 EKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF 158 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~ 158 (231)
++-|......|.. .|...+.+++.. ..+...|-|+|||.+.++..+ ..+..|...|+.+. +
T Consensus 45 H~Gfr~Qv~~WP~-nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~----------------n 105 (219)
T PF05148_consen 45 HEGFRQQVKKWPV-NPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP----------------N 105 (219)
T ss_dssp HHHHHHHHCTSSS--HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------------S
T ss_pred HHHHHHHHhcCCC-CcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC----------------C
Confidence 4444445556653 344444455543 223479999999999999765 35678999999542 2
Q ss_pred eEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 159 VSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 159 i~~~~~d~~~-~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
-.+..+|+.+ |.++++.|++++...+.- .+...++.+..|+|||||.|.|.+...
T Consensus 106 ~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 106 PRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp TTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEecc
Confidence 2478899988 777889999997766644 466789999999999999999988643
No 177
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.99 E-value=4.6e-10 Score=83.55 Aligned_cols=72 Identities=22% Similarity=0.352 Sum_probs=57.7
Q ss_pred cEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC----ceeEEEeCC
Q 026870 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE----LFDLIFDYT 182 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~fD~I~~~~ 182 (231)
.|+|+.||.|.++..+|+.+.+|+++|+++..++.|+.|+.-+++.++|+|+++|+.+..+.. .+|+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 699999999999999999988999999999999999999999998899999999999943322 289999863
No 178
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.97 E-value=4.2e-08 Score=76.01 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=86.9
Q ss_pred HHHHHHHHcCCCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---
Q 026870 96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--- 169 (231)
Q Consensus 96 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--- 169 (231)
.++..+++ ...++++||+|.=+|+-++.+|. .+.+|+++|+++...+.+.+.....+...+|+++++...+.
T Consensus 63 ~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 63 QFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 33444554 34568999999999988877775 66799999999999999998888888888999999998882
Q ss_pred -C---CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 170 -C---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 170 -~---~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
. ..++||++|. .|. ......+..++.+++++||+|++-.
T Consensus 141 l~~~~~~~tfDfaFv----Dad-K~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 141 LLADGESGTFDFAFV----DAD-KDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHhcCCCCceeEEEE----ccc-hHHHHHHHHHHHhhcccccEEEEec
Confidence 1 3468999993 221 2344578899999999999987754
No 179
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.97 E-value=1.2e-09 Score=92.07 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=73.7
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC----------------
Q 026870 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---------------- 172 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---------------- 172 (231)
+.+|||+|||+|.++..+++...+|+++|+++++++.|++++..++.. +++|+.+|+.+..+.
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 357999999999999999887679999999999999999999877653 699999999873221
Q ss_pred -CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 173 -ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 173 -~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
..||+|+....-.- ...++++.+. +|++++|+.+-+.
T Consensus 277 ~~~~d~v~lDPPR~G----~~~~~l~~l~---~~~~ivYvsC~p~ 314 (353)
T TIGR02143 277 SYNCSTIFVDPPRAG----LDPDTCKLVQ---AYERILYISCNPE 314 (353)
T ss_pred cCCCCEEEECCCCCC----CcHHHHHHHH---cCCcEEEEEcCHH
Confidence 13799884322111 1134444444 4789999887543
No 180
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.96 E-value=4.5e-09 Score=86.25 Aligned_cols=90 Identities=17% Similarity=0.208 Sum_probs=71.8
Q ss_pred cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026870 95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+..++..... ++.+|||||||.|.++..+++.+.+|+++|+++.+++.+++++...+..++++++.+|+.+... .
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~ 100 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-P 100 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-c
Confidence 4455666665433 5579999999999999999998889999999999999999988765444679999999988432 3
Q ss_pred ceeEEEeCCccc
Q 026870 174 LFDLIFDYTFFC 185 (231)
Q Consensus 174 ~fD~I~~~~~~~ 185 (231)
.||.|+++..++
T Consensus 101 ~~d~VvaNlPY~ 112 (294)
T PTZ00338 101 YFDVCVANVPYQ 112 (294)
T ss_pred ccCEEEecCCcc
Confidence 689998765554
No 181
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.96 E-value=1.2e-08 Score=78.05 Aligned_cols=117 Identities=19% Similarity=0.273 Sum_probs=80.9
Q ss_pred CcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcC--CCCe---------EEEEeCChHHHHHHHHHhccCCCCCceE
Q 026870 94 PAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMAS--PERY---------VVGLEISDIAIKKAEELSSSLPNAKFVS 160 (231)
Q Consensus 94 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~---------v~~iD~s~~~i~~a~~~~~~~~~~~~i~ 160 (231)
.++.+...+-.. ..++..|||..||+|.+.+..+. .... ++|+|+++++++.+++|+...+....+.
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 345554444333 33457999999999999988766 2323 8899999999999999999888878899
Q ss_pred EEEccCCCCC-CCCceeEEEeCCcccc-cCh-----HHHHHHHHHHHhhcCCCcEEE
Q 026870 161 FLKADFFTWC-PTELFDLIFDYTFFCA-IEP-----EMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 161 ~~~~d~~~~~-~~~~fD~I~~~~~~~~-~~~-----~~~~~~l~~~~~~L~pgG~li 210 (231)
+.+.|+.+.. ..+.+|.|+++..+.. +.. +....+++.+.++|++..+++
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999999955 6679999999876653 221 334677899999999944333
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.94 E-value=2.2e-08 Score=80.88 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=77.0
Q ss_pred cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026870 95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+..++..... ++.+|||+|||+|.++..+++.+..++++|+++.+++.++++... .++++++.+|+.+....
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence 4556666665533 457999999999999999999888999999999999999987743 24799999999884432
Q ss_pred cee---EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 174 LFD---LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 174 ~fD---~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
.+| +|+++..+ |++ ..++..+.. .+++...+..+.
T Consensus 91 ~~d~~~~vvsNlPy-~i~----~~il~~ll~--~~~~~~~~~~~q 128 (253)
T TIGR00755 91 DFPKQLKVVSNLPY-NIS----SPLIFKLLE--KPKFRLAVLMVQ 128 (253)
T ss_pred HcCCcceEEEcCCh-hhH----HHHHHHHhc--cCCCceEEEEeh
Confidence 466 66655443 333 334444443 455544444443
No 183
>PLN02823 spermine synthase
Probab=98.94 E-value=1.3e-08 Score=84.87 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=78.2
Q ss_pred CCCcEEEecCCCchHHHHhcC-C-CCeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC--CCCceeEEEe
Q 026870 108 PKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC--PTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~-~-~~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~~fD~I~~ 180 (231)
.+++||.+|+|.|..+..+++ . ..+++.+|+++++++.|++.+.... .+++++++.+|..... ..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 457999999999999998887 3 3489999999999999999875432 2468999999999843 3458999997
Q ss_pred CCcccc--cChH--HHHHHHH-HHHhhcCCCcEEEE
Q 026870 181 YTFFCA--IEPE--MRAAWAQ-KIKDFLKPDGELIT 211 (231)
Q Consensus 181 ~~~~~~--~~~~--~~~~~l~-~~~~~L~pgG~li~ 211 (231)
-..-.. -++. .-..+++ .+.+.|+|||++++
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 632110 0111 1246777 89999999998865
No 184
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.93 E-value=2.6e-09 Score=90.46 Aligned_cols=98 Identities=19% Similarity=0.139 Sum_probs=73.8
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------------C
Q 026870 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------------T 172 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------------~ 172 (231)
.+|||++||+|.++..+++...+|+++|.++.+++.++++...+++. +++|+.+|+.+..+ .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999999887779999999999999999998777653 79999999977321 1
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 173 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
..||+|+....-.- ...++++.+.+ |++++|+.+-+
T Consensus 287 ~~~D~v~lDPPR~G----~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVDPPRAG----LDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred CCCCEEEECCCCCC----CcHHHHHHHHc---cCCEEEEEeCH
Confidence 25899994333211 11344455543 78888888755
No 185
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.93 E-value=4e-09 Score=82.75 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=79.4
Q ss_pred hhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCce
Q 026870 80 KCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV 159 (231)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i 159 (231)
.-|......|-. +|...+.+.+.. ......|-|+|||.+.++. +.-..|+.+|+.+ .+-
T Consensus 154 ~gfr~QV~kWP~-nPld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~ 212 (325)
T KOG3045|consen 154 AGFRSQVKKWPE-NPLDVIIRKIKR-RPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNE 212 (325)
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHh-CcCceEEEecccchhhhhh---ccccceeeeeeec----------------CCC
Confidence 333334446653 233333333332 2234799999999998876 3445899999843 245
Q ss_pred EEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 160 SFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 160 ~~~~~d~~~-~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+++.+|+.+ +.++++.|++++...+.- ++...++.++.++|++||.|+|.+...
T Consensus 213 ~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 213 RVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred ceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhh
Confidence 689999999 677889999996655543 466789999999999999999987644
No 186
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.93 E-value=9.7e-09 Score=83.11 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=69.7
Q ss_pred cHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026870 95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+..++.... .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++.... ++++++++|+.+... .
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~-~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL-P 90 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc-h
Confidence 445566666543 34589999999999999999998889999999999999999887542 479999999988432 2
Q ss_pred ceeEEEeCCccc
Q 026870 174 LFDLIFDYTFFC 185 (231)
Q Consensus 174 ~fD~I~~~~~~~ 185 (231)
.||.|+++..++
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 489999876654
No 187
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.92 E-value=8.6e-10 Score=84.43 Aligned_cols=120 Identities=19% Similarity=0.278 Sum_probs=86.0
Q ss_pred CCCCCCCCCcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE
Q 026870 86 LTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~ 163 (231)
...|..-.|.+....+.... ......|+|..||.|..+..++..+..|+++|++|.-+..|+++++-+++.++|+|++
T Consensus 70 ~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~ 149 (263)
T KOG2730|consen 70 REGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFIC 149 (263)
T ss_pred ccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence 33566666666655555443 2355799999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC-----CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCc
Q 026870 164 ADFFTWCPT-----ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG 207 (231)
Q Consensus 164 ~d~~~~~~~-----~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG 207 (231)
||+.+.+.. .-+|+|+.+..+..- .....-+-.+...++|.|
T Consensus 150 GD~ld~~~~lq~~K~~~~~vf~sppwggp--~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 150 GDFLDLASKLKADKIKYDCVFLSPPWGGP--SYLRADVYDLETHLKPMG 196 (263)
T ss_pred chHHHHHHHHhhhhheeeeeecCCCCCCc--chhhhhhhhhhhhcchhH
Confidence 999994432 235677755433221 222233344444555443
No 188
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.91 E-value=7.4e-09 Score=81.88 Aligned_cols=94 Identities=21% Similarity=0.183 Sum_probs=72.4
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026870 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~ 188 (231)
..++||||+|.|..+..++..-.+|+++|.|+.|....+++- .+++..+-.. ..+.+||+|.|.+++..-.
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg--------~~vl~~~~w~-~~~~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKG--------FTVLDIDDWQ-QTDFKFDVISCLNVLDRCD 165 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCC--------CeEEehhhhh-ccCCceEEEeehhhhhccC
Confidence 368999999999999999887778999999999988776642 2333222211 1235799999999987653
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 189 PEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
....+|+.+++.|+|+|+|++..
T Consensus 166 --~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 166 --RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred --CHHHHHHHHHHHhCCCCEEEEEE
Confidence 33678999999999999988754
No 189
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.91 E-value=2.5e-08 Score=81.32 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=66.6
Q ss_pred cHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026870 95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+..+++... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++... ++++++++|+.+...+.
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH
Confidence 344555666543 3557999999999999999999878999999999999999987643 47999999999854322
Q ss_pred c-eeEEEeCCcc
Q 026870 174 L-FDLIFDYTFF 184 (231)
Q Consensus 174 ~-fD~I~~~~~~ 184 (231)
. ++.|+++..+
T Consensus 104 ~~~~~vv~NlPY 115 (272)
T PRK00274 104 LQPLKVVANLPY 115 (272)
T ss_pred cCcceEEEeCCc
Confidence 2 5788876543
No 190
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.6e-08 Score=75.33 Aligned_cols=108 Identities=18% Similarity=0.288 Sum_probs=83.4
Q ss_pred CCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026870 109 KGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~ 185 (231)
...++|||||+|..+.+|++ ++..+.++|+++++++...+.+..++ .+++.++.|+..-...++.|+++.+..+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--VHIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--CccceeehhHHhhhccCCccEEEECCCcC
Confidence 57999999999999999988 44589999999999998887776654 35889999999965558999998764432
Q ss_pred ccCh-------------------HHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 186 AIEP-------------------EMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 186 ~~~~-------------------~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
--++ +...+++..+-+.|.|.|++|+..-..++
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 1111 12356777788899999999988765543
No 191
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.1e-08 Score=77.86 Aligned_cols=106 Identities=20% Similarity=0.168 Sum_probs=80.3
Q ss_pred HHHHcCCCCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCC---------CCCceEEEEccC
Q 026870 100 HLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLP---------NAKFVSFLKADF 166 (231)
Q Consensus 100 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~---------~~~~i~~~~~d~ 166 (231)
+.+.....|+.+.||+|+|+|+++..++. .|..++|||.-++.++.+++++...- ...++.++.+|.
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 34443456789999999999999887774 56667999999999999999875431 123678889999
Q ss_pred CCC-CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 167 FTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 167 ~~~-~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
... ....+||.|++-..-.- ..+++...|++||.+++.-
T Consensus 154 r~g~~e~a~YDaIhvGAaa~~--------~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 154 RKGYAEQAPYDAIHVGAAASE--------LPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cccCCccCCcceEEEccCccc--------cHHHHHHhhccCCeEEEee
Confidence 884 44568999998754332 3567888899999998743
No 192
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.87 E-value=4.9e-08 Score=73.96 Aligned_cols=107 Identities=21% Similarity=0.121 Sum_probs=80.7
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCC--ceeEEEeC
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTE--LFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~--~fD~I~~~ 181 (231)
..+.++||+.+|+|.++...+++|+ .++.+|.+.+++...++|....+...+..++..|.... .... .||+|+.-
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 5678999999999999999999987 99999999999999999998887777899999998863 1222 49999976
Q ss_pred Ccccc-cChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 182 TFFCA-IEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 182 ~~~~~-~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
..++. +-+....-.+-.-...|+|+|.+++..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 66552 111111112222446799999876643
No 193
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.85 E-value=1.4e-08 Score=89.56 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=82.2
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCc
Q 026870 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF 183 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~I~~~~~ 183 (231)
...+||||||.|.++..+|. +...++|+|+....+..+.+.....++ .|+.++..|+.. .++++++|.|+.++.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 46999999999999999998 667999999999999888877665544 468888887643 556778999997766
Q ss_pred ccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026870 184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 184 ~~~~~~~------~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
-.|.-.. ....+++.+.+.|+|||.+.+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 4442111 22689999999999999998755
No 194
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.83 E-value=3.6e-08 Score=80.63 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=62.9
Q ss_pred HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---C
Q 026870 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C 170 (231)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~ 170 (231)
+.++++... .++..+||.+||.|..+..+++. ..+|+|+|.++++++.+++++.. .++++++++|+.+. .
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence 344444443 45679999999999999999984 36899999999999999988755 35799999999882 2
Q ss_pred CCC--ceeEEEeC
Q 026870 171 PTE--LFDLIFDY 181 (231)
Q Consensus 171 ~~~--~fD~I~~~ 181 (231)
+.+ ++|.|++.
T Consensus 85 ~~~~~~vDgIl~D 97 (296)
T PRK00050 85 AEGLGKVDGILLD 97 (296)
T ss_pred HcCCCccCEEEEC
Confidence 222 68988863
No 195
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.83 E-value=9e-09 Score=79.69 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=83.1
Q ss_pred CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhcc-CCCCCceEEEEccCCC---CCCCCceeEEEeCC
Q 026870 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSS-LPNAKFVSFLKADFFT---WCPTELFDLIFDYT 182 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~---~~~~~~fD~I~~~~ 182 (231)
.+.+|||-..|-|+.+...+++|+ +|+.+|-++..++.|.-|-.. .-...+|.++.+|..+ .+.+.+||+|+...
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 468999999999999999999999 999999999999988765322 1123468999999998 45677899999532
Q ss_pred c-ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 183 F-FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 183 ~-~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
. |.+...-....+.+++.+.|+|||.|+-..=.|
T Consensus 214 PRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P 248 (287)
T COG2521 214 PRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP 248 (287)
T ss_pred CccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence 2 222221233688999999999999996544333
No 196
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=2.6e-09 Score=82.41 Aligned_cols=103 Identities=19% Similarity=0.094 Sum_probs=84.0
Q ss_pred CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccccc
Q 026870 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAI 187 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~~~~ 187 (231)
..++|||||.|.....+...+. +++-+|.|..+++.++..-. .. -......+|-+. .+.+.++|+|+++..+|+.
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cc--eEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 6999999999999999988776 89999999999999886421 11 124456666665 5667899999999999998
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 188 EPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
++++..+.+|...|||+|.++...+..+
T Consensus 151 --NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 151 --NDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred --ccCchHHHHHHHhcCCCccchhHHhccc
Confidence 5678889999999999999988777654
No 197
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.78 E-value=4.2e-08 Score=78.92 Aligned_cols=100 Identities=26% Similarity=0.312 Sum_probs=76.2
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc----CC------------------------------
Q 026870 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS----LP------------------------------ 154 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~----~~------------------------------ 154 (231)
+.+||-.|||.|+++..++..|..+.|.|.|--|+-..+-.+.. ..
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p 136 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP 136 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence 36999999999999999999999999999999886544332111 00
Q ss_pred -----CCCceEEEEccCCCCCC-C---CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026870 155 -----NAKFVSFLKADFFTWCP-T---ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 155 -----~~~~i~~~~~d~~~~~~-~---~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
...++.+..||+.+... . +.||+|++.+.+.-. +....+|+.+.++|||||+.+
T Consensus 137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEE
Confidence 12367888889888433 2 589999987554432 667899999999999999554
No 198
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.78 E-value=1.8e-08 Score=85.59 Aligned_cols=97 Identities=14% Similarity=0.025 Sum_probs=77.2
Q ss_pred CCcEEEecCCCchHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEeCCccc
Q 026870 109 KGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC 185 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~I~~~~~~~ 185 (231)
+.+|||++||+|..++.++. .+ ..|+++|+++.+++.+++++..+++. ++++.++|+..... ...||+|+....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 35899999999999999976 33 38999999999999999999877653 46799999877443 467999996432
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
-. ...++....+.+++||+|++.
T Consensus 135 Gs----~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 GS----PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CC----cHHHHHHHHHHhcCCCEEEEE
Confidence 11 145778877888999999987
No 199
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.8e-08 Score=84.71 Aligned_cols=103 Identities=22% Similarity=0.214 Sum_probs=79.8
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC----CceeEEEeCCc
Q 026870 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT----ELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~fD~I~~~~~ 183 (231)
++.++||+-||.|.+++.++++..+|+|+|+++++++.|++++..++..+ ++|+.++.++..+. ..+|.|+....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 45799999999999999999999999999999999999999999987765 99999999994432 47899994322
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
=.-++ ..+++.+ ..++|..++|+++-+.
T Consensus 372 R~G~~----~~~lk~l-~~~~p~~IvYVSCNP~ 399 (432)
T COG2265 372 RAGAD----REVLKQL-AKLKPKRIVYVSCNPA 399 (432)
T ss_pred CCCCC----HHHHHHH-HhcCCCcEEEEeCCHH
Confidence 11111 2344444 4458888888887554
No 200
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.5e-08 Score=72.72 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=65.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCc
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~I~~~~~ 183 (231)
...+++++|+|||+|.++...+-++. .|+|+|+++++++.+++|..+..+ ++++.++|+.++. ..+.||..+.+..
T Consensus 46 diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCC
Confidence 46789999999999999977766665 899999999999999999988664 4789999999944 3468999998765
Q ss_pred cc
Q 026870 184 FC 185 (231)
Q Consensus 184 ~~ 185 (231)
|.
T Consensus 124 FG 125 (185)
T KOG3420|consen 124 FG 125 (185)
T ss_pred CC
Confidence 54
No 201
>PRK00536 speE spermidine synthase; Provisional
Probab=98.74 E-value=7.2e-08 Score=77.51 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=73.3
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC---CCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL---PNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~---~~~~~i~~~~~d~~~~~~~~~fD~I~~~~ 182 (231)
...+++||-+|.|.|..++.+++...+|+-+|+++++++.+++.+... -.++|++++.. +.+ ...++||+|+.-.
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs 147 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQ 147 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcC
Confidence 345589999999999999999995459999999999999999955432 12457777652 221 1235899999654
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
. .+ ..+.+.+.++|+|||+++.
T Consensus 148 ~---~~----~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 148 E---PD----IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred C---CC----hHHHHHHHHhcCCCcEEEE
Confidence 3 11 4567899999999998876
No 202
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.72 E-value=5.6e-08 Score=77.99 Aligned_cols=109 Identities=19% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC--CCC-ceeEE
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC--PTE-LFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~-~fD~I 178 (231)
.++++||-||.|.|..+..+++.. .+++.+|+++.+++.|++.+.... .+++++++.+|...+. ..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 356899999999999999999843 599999999999999998765421 2468999999998832 233 89999
Q ss_pred EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+.-..-...+.. ....+++.+.++|+|||++++-.-+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 974332111111 1257899999999999999876533
No 203
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.72 E-value=1.4e-07 Score=76.76 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=81.4
Q ss_pred CcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCC--C-CCceEEEEccCCCCCC--CCceeEEEeCC
Q 026870 110 GRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTWCP--TELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~--~~~fD~I~~~~ 182 (231)
++||-||.|.|..++.+++.. .+++.+|++++.++.+++.+.... . ++|+.++..|..++.. ..+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999944 499999999999999999876543 2 4789999999999432 33799999764
Q ss_pred cccccCh-H--HHHHHHHHHHhhcCCCcEEEEE
Q 026870 183 FFCAIEP-E--MRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 183 ~~~~~~~-~--~~~~~l~~~~~~L~pgG~li~~ 212 (231)
.-. ..+ + .-..+++.+.++|+++|+++..
T Consensus 158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 433 111 1 1267899999999999988775
No 204
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.71 E-value=5e-08 Score=74.58 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=76.5
Q ss_pred cEEEecCCCchHHHHhc--CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026870 111 RALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~ 188 (231)
+++|+|+|.|.-++.++ .+..+++.+|.+.+-+.+.++.....++. |++++++.+++......||+|+++.+-..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv~~l-- 127 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAVAPL-- 127 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESSSSH--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehhcCH--
Confidence 89999999998777665 47789999999999999988877776664 79999999999555678999999887432
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 189 PEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
..++..+...+++||.++..
T Consensus 128 ----~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 128 ----DKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp ----HHHHHHHGGGEEEEEEEEEE
T ss_pred ----HHHHHHHHHhcCCCCEEEEE
Confidence 46788899999999998764
No 205
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.71 E-value=1.3e-07 Score=74.71 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=64.5
Q ss_pred HHHHHHHHcCC--CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHH-HHHHhccCCCCCce-EEEEccCCC--
Q 026870 96 PIIVHLHQSGA--LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKK-AEELSSSLPNAKFV-SFLKADFFT-- 168 (231)
Q Consensus 96 ~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~-a~~~~~~~~~~~~i-~~~~~d~~~-- 168 (231)
..+..++.... .++.+|||+|||+|.++..+++.|. +|+++|+++.++.. .+++. ++ .+...|+..
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-------~v~~~~~~ni~~~~ 133 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-------RVKVLERTNIRYVT 133 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-------CeeEeecCCcccCC
Confidence 33455555543 3567999999999999999999875 89999999977765 33321 22 123333332
Q ss_pred ---CCC-CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 169 ---WCP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 169 ---~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
..+ -..+|++|++..+ .+..+.++|+| |.+++..
T Consensus 134 ~~~~~~d~~~~DvsfiS~~~----------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 134 PADIFPDFATFDVSFISLIS----------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred HhHcCCCceeeeEEEeehHh----------HHHHHHHHhCc-CeEEEEc
Confidence 111 1257777743332 46788999999 8765543
No 206
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=2.4e-07 Score=73.99 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=73.3
Q ss_pred cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026870 95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+.+++..... ++..|||||+|.|.++..|++.+.+|+++|+++.++...++..... ++++++++|+.......
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchh
Confidence 5557777776643 4589999999999999999999999999999999999999987533 57999999999954333
Q ss_pred --ceeEEEeCCcccccChHH
Q 026870 174 --LFDLIFDYTFFCAIEPEM 191 (231)
Q Consensus 174 --~fD~I~~~~~~~~~~~~~ 191 (231)
.++.|+++..++ ++.+.
T Consensus 93 l~~~~~vVaNlPY~-Isspi 111 (259)
T COG0030 93 LAQPYKVVANLPYN-ISSPI 111 (259)
T ss_pred hcCCCEEEEcCCCc-ccHHH
Confidence 678888765443 44333
No 207
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.65 E-value=2.9e-07 Score=73.00 Aligned_cols=87 Identities=23% Similarity=0.256 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026870 96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (231)
Q Consensus 96 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 174 (231)
..+..+++.... ++..|||+|.|+|.++..|++.|.+|+++|+++.++....++.+..+...+.+++.+|.....- -.
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~ 123 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PR 123 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cc
Confidence 345556665544 5589999999999999999999999999999999999999999887777889999999998542 25
Q ss_pred eeEEEeCCc
Q 026870 175 FDLIFDYTF 183 (231)
Q Consensus 175 fD~I~~~~~ 183 (231)
||.++++..
T Consensus 124 fd~cVsNlP 132 (315)
T KOG0820|consen 124 FDGCVSNLP 132 (315)
T ss_pred cceeeccCC
Confidence 899987543
No 208
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.63 E-value=8.6e-08 Score=76.55 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=88.3
Q ss_pred cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCC
Q 026870 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~ 173 (231)
-+.+..++..... +..++|+|||.|.....- +...++|+|++...+..++..-. .....+|+.+ +.+..
T Consensus 33 Wp~v~qfl~~~~~-gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~-------~~~~~ad~l~~p~~~~ 102 (293)
T KOG1331|consen 33 WPMVRQFLDSQPT-GSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGG-------DNVCRADALKLPFREE 102 (293)
T ss_pred cHHHHHHHhccCC-cceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCC-------ceeehhhhhcCCCCCC
Confidence 3456666665433 679999999999765322 55579999999998887765321 1467788888 66778
Q ss_pred ceeEEEeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 174 LFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 174 ~fD~I~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
+||..++..++||+.. .-+..+++++.++|+|||..++..|+.+.
T Consensus 103 s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 103 SFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 9999999999999975 56689999999999999998888876653
No 209
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.63 E-value=5.3e-07 Score=74.71 Aligned_cols=103 Identities=12% Similarity=0.001 Sum_probs=77.9
Q ss_pred CCCcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCCCCCce--EEEEccCCCC---CC----C
Q 026870 108 PKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFV--SFLKADFFTW---CP----T 172 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i--~~~~~d~~~~---~~----~ 172 (231)
++..++|+|||+|.-+..|++ ....++++|+|..+++.+.+++..... +.+ .-+.+|..+. .+ .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence 345899999999988766554 245899999999999999988762211 234 4488888772 21 2
Q ss_pred CceeEEEeC-CcccccChHHHHHHHHHHHh-hcCCCcEEEE
Q 026870 173 ELFDLIFDY-TFFCAIEPEMRAAWAQKIKD-FLKPDGELIT 211 (231)
Q Consensus 173 ~~fD~I~~~-~~~~~~~~~~~~~~l~~~~~-~L~pgG~li~ 211 (231)
....+++.. .++.+++++....+|+.+++ .|+|||.|++
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 245666665 47899999999999999999 9999998866
No 210
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=3.4e-07 Score=72.58 Aligned_cols=110 Identities=19% Similarity=0.092 Sum_probs=80.9
Q ss_pred HHHHHHcC-CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CC
Q 026870 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WC 170 (231)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~ 170 (231)
+..++..+ ..|+.+|||-|.|+|.++.++++ +-.+++.+|+.+...+.|.+.+.+.++.+++++.+-|+-. ..
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 34444444 45678999999999999999988 4458999999999999999999999999999999999988 22
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 171 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
....+|.|+.-..-.| .++-.+...||.+|. .++.|+
T Consensus 174 ks~~aDaVFLDlPaPw-------~AiPha~~~lk~~g~-r~csFS 210 (314)
T KOG2915|consen 174 KSLKADAVFLDLPAPW-------EAIPHAAKILKDEGG-RLCSFS 210 (314)
T ss_pred cccccceEEEcCCChh-------hhhhhhHHHhhhcCc-eEEecc
Confidence 3568999995433222 123344556676664 233443
No 211
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.60 E-value=9.9e-08 Score=80.80 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=78.8
Q ss_pred CcEEEecCCCchHHHHhcCC--CC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCCcc
Q 026870 110 GRALVPGCGTGYDVVAMASP--ER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF 184 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~--~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~I~~~~~~ 184 (231)
.+|||+.||+|..++.++.. |. +|+++|+++.+++.+++|+..++.. ++.+++.|...... ...||+|+... +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 58999999999999999985 43 8999999999999999999776543 58899999888432 35799998644 2
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
. .+ ..+++.+.+.+++||.|++..
T Consensus 124 G-s~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 G-TP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-Cc----HHHHHHHHHhcccCCEEEEEe
Confidence 2 21 368899999999999998874
No 212
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.58 E-value=5.4e-07 Score=73.49 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=74.5
Q ss_pred CCCCcEEEecCCCchHHHHhcC--C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~ 183 (231)
..+.+|||+|||.|..+..+.+ + -.+++++|.|+.+++.++.............+......+..+-...|+|++.++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 4557999999999987766655 2 338999999999999998876544311111111111111122234499999999
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+.-++...+..+++.+.+.+++ .|++++..
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 9999888888999999888877 77777643
No 213
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.55 E-value=7.2e-08 Score=82.66 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=71.8
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEE---eCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026870 110 GRALVPGCGTGYDVVAMASPERYVVGL---EISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~i---D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~ 186 (231)
..+||+|||+|.++..|.+++.....+ |..+..+++|.++.-. .-+. .-+.-.-+++...||+|.|..++..
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvp----a~~~-~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVP----AMIG-VLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcc----hhhh-hhccccccCCccchhhhhccccccc
Confidence 589999999999999999988765555 4445566677655311 1011 1122233788899999999988765
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
..+.+ ..+|-++.|+|+|||+++...-+.+
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 54333 4588999999999999987655543
No 214
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.55 E-value=8.4e-07 Score=81.40 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=79.4
Q ss_pred CCCcEEEecCCCchHHHHhcC------CC--------------------------------------CeEEEEeCChHHH
Q 026870 108 PKGRALVPGCGTGYDVVAMAS------PE--------------------------------------RYVVGLEISDIAI 143 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~------~~--------------------------------------~~v~~iD~s~~~i 143 (231)
++..++|.+||+|.+.+..+. +| .+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 457999999999999877653 11 2689999999999
Q ss_pred HHHHHHhccCCCCCceEEEEccCCCCCC---CCceeEEEeCCcccc-cC-hHHHHHHHHHHHhhcC---CCcEEEEEEc
Q 026870 144 KKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFFCA-IE-PEMRAAWAQKIKDFLK---PDGELITLMF 214 (231)
Q Consensus 144 ~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~fD~I~~~~~~~~-~~-~~~~~~~l~~~~~~L~---pgG~li~~~~ 214 (231)
+.|++|+...++.+.++|.++|+.+... .++||+|+++..+.. +. ......+.+.+.+.++ +|+.+++.+-
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 9999999998888889999999988432 246999999876543 21 2333444444444443 8888877653
No 215
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.55 E-value=3.8e-07 Score=73.03 Aligned_cols=110 Identities=16% Similarity=0.057 Sum_probs=73.6
Q ss_pred CCCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCC---------------------------CCC
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP---------------------------NAK 157 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~---------------------------~~~ 157 (231)
..++.++||||||.-.....-+. ...+++..|+.+..++..++-+...+ ...
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 34557999999999655433333 34489999999998876665443322 001
Q ss_pred ce-EEEEccCCCCC--CC-----CceeEEEeCCcccccC--hHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 158 FV-SFLKADFFTWC--PT-----ELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 158 ~i-~~~~~d~~~~~--~~-----~~fD~I~~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
.| .++.+|+.+.. .. .+||+|++.+++.... .+.....++++.++|||||.|++...-
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 23 37889998832 22 2499999999988764 367789999999999999999887653
No 216
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.54 E-value=2.6e-07 Score=70.74 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=69.8
Q ss_pred HHHHHHcCC-C---CCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-
Q 026870 98 IVHLHQSGA-L---PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW- 169 (231)
Q Consensus 98 ~~~~~~~~~-~---~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~- 169 (231)
+.++.+... . ++.+|||+||++|.++..+++.+ .+|+|+|+.+. ... ..+.++++|+.+.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~---~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPL---QNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEE
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccc---cceeeeecccchhh
Confidence 445555543 2 23799999999999999999977 69999999876 110 2466667766551
Q ss_pred --------CC--CCceeEEEeCCccccc-----C----hHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 170 --------CP--TELFDLIFDYTFFCAI-----E----PEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 170 --------~~--~~~fD~I~~~~~~~~~-----~----~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
.. .+.+|+|+|-.....- + .+.....+..+...|+|||.+++-.|...
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 11 2589999997632211 1 12334555666788999999999888743
No 217
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.54 E-value=3.4e-07 Score=66.28 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=61.0
Q ss_pred eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCcccccCh---------HHHHHHHHHH
Q 026870 132 YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEP---------EMRAAWAQKI 199 (231)
Q Consensus 132 ~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~I~~~~~~~~~~~---------~~~~~~l~~~ 199 (231)
+|+++|+.+++++..++++...+..++++++..+..+ ..+.+++|+++. .+.++|. +.-.+.++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iF--NLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIF--NLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEE--EESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEE--ECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999988777789999998887 333458999984 4444543 2336889999
Q ss_pred HhhcCCCcEEEEEEccC
Q 026870 200 KDFLKPDGELITLMFPI 216 (231)
Q Consensus 200 ~~~L~pgG~li~~~~~~ 216 (231)
.++|+|||++.++.|+.
T Consensus 79 l~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHEEEEEEEEEEE--S
T ss_pred HHhhccCCEEEEEEeCC
Confidence 99999999999999975
No 218
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.53 E-value=1.3e-06 Score=73.10 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=85.7
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-----------------------------------------eEEEEeCChHHHH
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPER-----------------------------------------YVVGLEISDIAIK 144 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-----------------------------------------~v~~iD~s~~~i~ 144 (231)
..++..++|.-||+|.+.+..|..+. .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 33447999999999999988876332 3789999999999
Q ss_pred HHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCCcccc-cCh-----HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 145 KAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCA-IEP-----EMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 145 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~I~~~~~~~~-~~~-----~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.|+.|....++.+.|+|.++|+..+.+. +.+|+|+|+..+.- +.. .....+.+.+++.++--+..++++.
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 9999999999999999999999996655 78999999876532 221 1335666677788888787777654
No 219
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.52 E-value=4.9e-07 Score=70.36 Aligned_cols=114 Identities=22% Similarity=0.203 Sum_probs=70.2
Q ss_pred cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhcc-------CCC-CCceEEEE
Q 026870 95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS-------LPN-AKFVSFLK 163 (231)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~-------~~~-~~~i~~~~ 163 (231)
...+..+++...+ ++...+|+|||.|......+- ...+.+|||+.+...+.|.+.... .+. ..++++.+
T Consensus 28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 3456677776654 458999999999999887775 334699999999988877653322 221 24688999
Q ss_pred ccCCCCCC----CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 164 ADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 164 ~d~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
+|+.+... -...|+|++++.. ++++ ....|.++...||+|.+++.
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKPGARIIS 156 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-TT-EEEE
T ss_pred cCccccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCCCCEEEE
Confidence 99887321 1357999998765 4444 44556777788999988764
No 220
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.52 E-value=6.8e-07 Score=67.62 Aligned_cols=119 Identities=20% Similarity=0.253 Sum_probs=87.2
Q ss_pred cchhhhhccCCCCCCCCCCcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhcc
Q 026870 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSS 152 (231)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~ 152 (231)
-+|.-.|..+.. +.+++... ...+++|||+|+|+|..+...++.|. .|+..|+.+.......-|...
T Consensus 55 pfwa~~WagG~~----------lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~a 124 (218)
T COG3897 55 PFWAFAWAGGQV----------LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAA 124 (218)
T ss_pred hHHHHHHhhhHH----------HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhh
Confidence 477777755433 23333322 23468999999999999999999887 899999999999988888877
Q ss_pred CCCCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 153 ~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
+++ .|.|...|..- .+..||+++...+++.- +...+++. +.+.|+..|..++
T Consensus 125 ngv--~i~~~~~d~~g--~~~~~Dl~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 125 NGV--SILFTHADLIG--SPPAFDLLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred ccc--eeEEeeccccC--CCcceeEEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEE
Confidence 763 48888888877 44579999998887654 45566777 5555555554433
No 221
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.52 E-value=4e-07 Score=76.90 Aligned_cols=62 Identities=29% Similarity=0.375 Sum_probs=49.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
...+..|||+-||.|.+++.|++...+|+|+|.++.+++.|++++..+++ ++++|+.++..+
T Consensus 194 ~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~ 255 (352)
T PF05958_consen 194 DLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAED 255 (352)
T ss_dssp TT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHH
T ss_pred hcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccc
Confidence 33335899999999999999999999999999999999999999988875 479999877654
No 222
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.51 E-value=1.2e-07 Score=79.79 Aligned_cols=110 Identities=24% Similarity=0.227 Sum_probs=91.2
Q ss_pred CCCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCc
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~ 183 (231)
..++..++|+|||.|.....++. .+..++|+|.++..+..+........+..+..+..+|+.+ ++++.+||.+.+..+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 44556899999999999999998 5579999999999888887765555455556678888888 678889999999999
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
..|.+ ....+++++.++++|||+.++.++...
T Consensus 188 ~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 188 VCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred cccCC--cHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 99984 557889999999999999998776443
No 223
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.51 E-value=5.7e-07 Score=74.78 Aligned_cols=106 Identities=22% Similarity=0.276 Sum_probs=71.6
Q ss_pred CCCcEEEecCCCchHHHHhcC---------CCCeEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCC--CC-CCc
Q 026870 108 PKGRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTW--CP-TEL 174 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~---------~~~~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~--~~-~~~ 174 (231)
++.+|+|.+||+|.+...+.+ ...+++|+|+++.++..|+-++.-.+.. ....+..+|.... .. ...
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 346899999999999888765 4568999999999999998776544322 2356888887762 22 468
Q ss_pred eeEEEeCCccccc--C-h----------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 175 FDLIFDYTFFCAI--E-P----------------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 175 fD~I~~~~~~~~~--~-~----------------~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
||+|+++..+... . . ..--.++..+.+.|++||++.++.
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 9999998554322 0 0 111358899999999999876654
No 224
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.49 E-value=5.3e-06 Score=60.89 Aligned_cols=103 Identities=24% Similarity=0.346 Sum_probs=71.6
Q ss_pred EEEecCCCchHH--HHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCC-CceeEEEeCCccc
Q 026870 112 ALVPGCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT-ELFDLIFDYTFFC 185 (231)
Q Consensus 112 vLDiGcG~G~~~--~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~-~~fD~I~~~~~~~ 185 (231)
++|+|||+|... ..+...+..++++|+++.++..++..... .....+.+...+... .+.. ..||++......+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999965 33333335899999999999985554422 111115778888765 2333 3799994444444
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
+.. ....+..+.+.++|+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 443 567899999999999999888776544
No 225
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.49 E-value=4.9e-07 Score=70.41 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=78.5
Q ss_pred CCcEEEecCCCchHHHHhc--CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc-eeEEEeCCccc
Q 026870 109 KGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL-FDLIFDYTFFC 185 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-fD~I~~~~~~~ 185 (231)
+.+++|||+|.|.-+..++ .+..+|+-+|...+-+.+.++...+.+++ |++++++.+++...... ||+|.++.+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQEKKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccccccCcEEEeehccc
Confidence 5799999999999888866 46778999999999999998887776653 69999999999765445 99999887643
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
...++..+...+++||.+++.
T Consensus 147 ------L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 147 ------LNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ------hHHHHHHHHHhcccCCcchhh
Confidence 245677888999999887543
No 226
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.47 E-value=2e-06 Score=74.98 Aligned_cols=109 Identities=19% Similarity=0.122 Sum_probs=82.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEe
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD 180 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~I~~ 180 (231)
..++.+|||++||.|.=+..++. ....+++.|+++.-++.+++++.+.++. ++.+...|...+. ..+.||.|+.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEEE
Confidence 35678999999999999988887 2248999999999999999999888754 5788888877632 2357999994
Q ss_pred ----CC--cccc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 181 ----YT--FFCA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ----~~--~~~~-------~~~-------~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+. ++.. .++ ..+.++|....+.|||||+|+.++-+
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 32 2222 111 12368899999999999999876543
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.43 E-value=1.4e-06 Score=63.89 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=67.8
Q ss_pred CCCCcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCCCCCCCceeEE
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTWCPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~fD~I 178 (231)
.+...|+|+|||.|+++..++. ++.+|+++|.++..++.+.++..... ...++.+..++..+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 3457999999999999999987 56799999999999999988776654 445677777777665445677888
Q ss_pred EeCCcccccChHHHHHHHHHHHh
Q 026870 179 FDYTFFCAIEPEMRAAWAQKIKD 201 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~ 201 (231)
+.-+.-..+++ .+|+.+.+
T Consensus 104 vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 104 VGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEeecccchHH----HHHHHHHH
Confidence 86655555543 34555554
No 228
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.41 E-value=7.5e-07 Score=71.98 Aligned_cols=103 Identities=20% Similarity=0.324 Sum_probs=64.9
Q ss_pred CCcEEEecCCC-chHHHHhcC---CCCeEEEEeCChHHHHHHHHHhc-cCCCCCceEEEEccCCCCC-CCCceeEEEeCC
Q 026870 109 KGRALVPGCGT-GYDVVAMAS---PERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFTWC-PTELFDLIFDYT 182 (231)
Q Consensus 109 ~~~vLDiGcG~-G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~-~~~~fD~I~~~~ 182 (231)
+.+|+=||||. -..++.+++ .+..|+++|+++++++.+++... ..++..++.|+.+|..+.. .-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 36999999997 455666665 35689999999999999998776 4445678999999998753 235899998654
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
... ++.+.+.+++..+.+.++||+.|++-
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 432 34467789999999999999988764
No 229
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=3.7e-06 Score=64.75 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=77.4
Q ss_pred HHHHHHHcC--CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-
Q 026870 97 IIVHLHQSG--ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC- 170 (231)
Q Consensus 97 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 170 (231)
.+.++.++. ..++.+|+|+|+..|.++..+++ .+..|+++|+.|- ... .++.++++|+++..
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~---~~V~~iq~d~~~~~~ 99 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPI---PGVIFLQGDITDEDT 99 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccC---CCceEEeeeccCccH
Confidence 345555554 33568999999999999999988 3335999999764 111 35899999999832
Q ss_pred --------CCCceeEEEeCCcc--------cccC-hHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 171 --------PTELFDLIFDYTFF--------CAIE-PEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 171 --------~~~~fD~I~~~~~~--------~~~~-~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
...++|+|++-... +|.- -.....++.....+|+|||.+++-.|..++
T Consensus 100 ~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 100 LEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred HHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 23457999975443 2221 123356677778899999999998887653
No 230
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.38 E-value=2e-06 Score=66.42 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=74.5
Q ss_pred cHHHHHHHHcCCC------CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026870 95 APIIVHLHQSGAL------PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 95 ~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
...+..++..... ...++|||||=+..+...-. .-..|+.||+++. .-.+.+.|+.+
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~-~~fdvt~IDLns~----------------~~~I~qqDFm~ 94 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS-GWFDVTRIDLNSQ----------------HPGILQQDFME 94 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCccccc-CceeeEEeecCCC----------------CCCceeecccc
Confidence 4445555554321 12599999997666544321 2337999999773 13467888888
Q ss_pred -CC---CCCceeEEEeCCcccccC-hHHHHHHHHHHHhhcCCCcE-----EEEEE
Q 026870 169 -WC---PTELFDLIFDYTFFCAIE-PEMRAAWAQKIKDFLKPDGE-----LITLM 213 (231)
Q Consensus 169 -~~---~~~~fD~I~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~-----li~~~ 213 (231)
+. +.+.||+|.++.++.++| +..+-++++++.+.|+|+|. |+++.
T Consensus 95 rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 95 RPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred CCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 33 356899999999999998 57889999999999999999 76654
No 231
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.38 E-value=2e-06 Score=73.73 Aligned_cols=106 Identities=15% Similarity=0.232 Sum_probs=87.5
Q ss_pred CCCC-cEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCc
Q 026870 107 LPKG-RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~ 183 (231)
.+.. ++|-+|||.-.+...+.+-|. .++.+|+|+..++.+....... ..-+.+...|+.. .++.++||+|+....
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCc
Confidence 3445 999999999999999999887 8999999999999887755322 2458899999999 678889999999988
Q ss_pred ccccCh--------HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 184 FCAIEP--------EMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 184 ~~~~~~--------~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
++++.. ..+...+.++.++|++||+.+.+++
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 887632 1346778999999999999888887
No 232
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.33 E-value=3.7e-06 Score=74.91 Aligned_cols=76 Identities=18% Similarity=0.343 Sum_probs=54.5
Q ss_pred CCcEEEecCCCchHHHHhcCC--------C--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----C--CC
Q 026870 109 KGRALVPGCGTGYDVVAMASP--------E--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----C--PT 172 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~--------~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~ 172 (231)
..+|||+|||+|.+...++.. + .+++|+|+++.++..++.++...+ ...+.+...|.... . ..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeeccccccccccccccc
Confidence 359999999999999888751 1 478999999999999998876543 11245555553331 1 12
Q ss_pred CceeEEEeCCccc
Q 026870 173 ELFDLIFDYTFFC 185 (231)
Q Consensus 173 ~~fD~I~~~~~~~ 185 (231)
+.||+|+++..+.
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 4799999986654
No 233
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.33 E-value=4.3e-06 Score=67.01 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=70.6
Q ss_pred CcEEEecCCC--chHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---C----CCcee-
Q 026870 110 GRALVPGCGT--GYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---P----TELFD- 176 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~----~~~fD- 176 (231)
.-.||||||- -.++-.+++ +..+|+-+|.+|..+..++..+..... .+..++++|+.++. . .+.+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 5899999994 234444544 788999999999999999998766531 23889999999921 1 12233
Q ss_pred ----EEEeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 177 ----LIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 177 ----~I~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
.++...++||+++ ++...+++.+.+.|.||.+|.+.+...+
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 4667788999976 6778999999999999999999888765
No 234
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.32 E-value=1.2e-06 Score=65.94 Aligned_cols=99 Identities=19% Similarity=0.119 Sum_probs=79.8
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccCh
Q 026870 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP 189 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~ 189 (231)
..+.|+|+|+|.++...++...+|++++.+|.....|.+++.-.+ .++++++.+|+.+..- ...|+|+|-..-..+-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-~~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG-DVNWEVVVGDARDYDF-ENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC-CcceEEEecccccccc-cccceeHHHHhhHHhhc
Confidence 699999999999999999987799999999999999999874443 3579999999999543 46899998654333333
Q ss_pred HHHHHHHHHHHhhcCCCcEEE
Q 026870 190 EMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 190 ~~~~~~l~~~~~~L~pgG~li 210 (231)
+.+...+..+...|+.++.++
T Consensus 112 E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ccccHHHHHHHHHhhcCCccc
Confidence 445677888888899988875
No 235
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.32 E-value=6.3e-06 Score=63.37 Aligned_cols=113 Identities=21% Similarity=0.214 Sum_probs=84.7
Q ss_pred cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CC
Q 026870 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WC 170 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~ 170 (231)
.+.+.+..+....++++||++|-|-|...-++-+.. ..-+.||..+.+++..++...... .++.+..+-+.+ ..
T Consensus 88 tpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L 165 (271)
T KOG1709|consen 88 TPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTL 165 (271)
T ss_pred hHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccc
Confidence 455566555556778999999999999888886633 367889999999999998654432 468888887777 45
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 171 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
+++.||-|+--..-.+. ++...+.+.+.++|||+|++-.
T Consensus 166 ~d~~FDGI~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cccCcceeEeechhhHH--HHHHHHHHHHhhhcCCCceEEE
Confidence 67789999843322333 6777888899999999997743
No 236
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.30 E-value=8e-06 Score=63.57 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=56.5
Q ss_pred EEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC-ceeEEEeCC
Q 026870 112 ALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT 182 (231)
Q Consensus 112 vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~fD~I~~~~ 182 (231)
|.||||--|++...|++.|. +++++|+++..++.|+++....++.++++++.+|-.+..+.+ ..|.|+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec
Confidence 68999999999999999876 899999999999999999999988899999999988855444 378887643
No 237
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.26 E-value=4.7e-07 Score=63.03 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=43.3
Q ss_pred EEecCCCchHHHHhcC---CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCcc
Q 026870 113 LVPGCGTGYDVVAMAS---PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTFF 184 (231)
Q Consensus 113 LDiGcG~G~~~~~l~~---~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~I~~~~~~ 184 (231)
||+|+..|..+..+++ .. .+++++|..+. .+..++...+.+..++++++.++..+.. +..+||+|+.-..-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 6899999999888876 23 27999999995 2333333333334467999999998732 24689999954321
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
..+.....++.+.+.|+|||++++-++
T Consensus 80 ---~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 80 ---SYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred ---CHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 124556778899999999999887553
No 238
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.25 E-value=6.7e-06 Score=66.72 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=73.7
Q ss_pred cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026870 95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+.++++.... ++..|||+|+|.|.++..|++.+.+++++|.++..++..++.... .++++++.+|+..+....
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS---NPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT---CSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh---cccceeeecchhccccHH
Confidence 3445556665543 568999999999999999999889999999999999999987753 257999999999954333
Q ss_pred ----ceeEEEeCCcccccChHHHHHHHHHHHhhcCC
Q 026870 174 ----LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP 205 (231)
Q Consensus 174 ----~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~p 205 (231)
....|+++..+ +++ ..++.++...-+.
T Consensus 93 ~~~~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp HCSSSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred hhcCCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 55667765444 443 3445555543333
No 239
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.19 E-value=9.3e-06 Score=66.34 Aligned_cols=91 Identities=22% Similarity=0.176 Sum_probs=52.6
Q ss_pred HHHHHHcCCCC---CCcEEEecCCCchHH-HHhcC-CCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEcc----CC
Q 026870 98 IVHLHQSGALP---KGRALVPGCGTGYDV-VAMAS-PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKAD----FF 167 (231)
Q Consensus 98 ~~~~~~~~~~~---~~~vLDiGcG~G~~~-~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d----~~ 167 (231)
+.+++...... .-++||||||..-.- +..++ .+.+++|+|+++..++.|++++..+ .+.++|+++... ++
T Consensus 89 i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~ 168 (299)
T PF05971_consen 89 IADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIF 168 (299)
T ss_dssp HHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SST
T ss_pred HHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccc
Confidence 55555543211 358999999997442 22222 6889999999999999999999988 788899998653 33
Q ss_pred C--CCCCCceeEEEeCCcccccC
Q 026870 168 T--WCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 168 ~--~~~~~~fD~I~~~~~~~~~~ 188 (231)
. ..+.+.||+.+|+..|+.-.
T Consensus 169 ~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 169 DGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp TTSTT--S-EEEEEE-----SS-
T ss_pred hhhhcccceeeEEecCCccccCh
Confidence 3 12335899999998887643
No 240
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.16 E-value=2.7e-05 Score=64.55 Aligned_cols=104 Identities=16% Similarity=0.281 Sum_probs=77.4
Q ss_pred CcEEEecCCCchHHHHhcC-CC-CeEEEEeCChHHHHHHHHHh--ccC---C-CCCceEEEEccCCCCCC--CCceeEEE
Q 026870 110 GRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELS--SSL---P-NAKFVSFLKADFFTWCP--TELFDLIF 179 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~--~~~---~-~~~~i~~~~~d~~~~~~--~~~fD~I~ 179 (231)
.+||-+|.|.|...+.+.+ ++ .+++-+|.+|++++.++++. ... . .+++++++..|.+++.. .+.||+|+
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 6999999999999999999 54 49999999999999998532 221 1 24689999999999543 45899998
Q ss_pred eCCcccccCh---HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 180 DYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 180 ~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
....-..-+. -.-..+...+.+.|+++|.+++..
T Consensus 371 VDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 371 VDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 5322111100 122567888999999999988754
No 241
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.15 E-value=3.5e-05 Score=63.38 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=61.5
Q ss_pred HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---C-
Q 026870 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C- 170 (231)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~- 170 (231)
+.++++... .++..++|.=||.|..+..+++. ..+|+|+|.++.+++.+++++..+ ..++.++++++.+. .
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHH
Confidence 344444443 45679999999999999999873 368999999999999999987654 25799999988872 1
Q ss_pred --CCCceeEEEe
Q 026870 171 --PTELFDLIFD 180 (231)
Q Consensus 171 --~~~~fD~I~~ 180 (231)
...++|.|+.
T Consensus 87 ~~~~~~vDgIl~ 98 (305)
T TIGR00006 87 ELLVTKIDGILV 98 (305)
T ss_pred hcCCCcccEEEE
Confidence 1235787775
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.13 E-value=9.3e-06 Score=67.20 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=54.2
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEeCCc
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~I~~~~~ 183 (231)
.++.++||+||++|.++..++++|..|++||..+.. ..+. ..++|.....|.+...+ .+.+|.++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 456899999999999999999999999999965422 1111 12579999998888655 678999998655
No 243
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=6.2e-05 Score=63.70 Aligned_cols=108 Identities=22% Similarity=0.231 Sum_probs=80.7
Q ss_pred CCCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCC-CceeE
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT-ELFDL 177 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~-~~fD~ 177 (231)
..++.+|||+.++.|.=+..++. .|..|+++|.++.-++..++++.+.++.+ +.....|... ..+. +.||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcCcE
Confidence 55678999999999988888877 24568999999999999999999987654 6777777654 2222 25999
Q ss_pred EEeC------Cccc-------ccCh-------HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 178 IFDY------TFFC-------AIEP-------EMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 I~~~------~~~~-------~~~~-------~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
|+.- .++. ...+ ..+.++|....+.|||||+|+.++=
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 9963 2221 1111 2347899999999999999987663
No 244
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.10 E-value=1.7e-05 Score=60.53 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=70.6
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCC------CCCceEEEEccCCCCCCC----CceeE
Q 026870 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWCPT----ELFDL 177 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~------~~~~i~~~~~d~~~~~~~----~~fD~ 177 (231)
--+.|||||-|.++..|+. +..-+.|.|+-.++.++.++++.... .-.++.+...+...+.+. ++..-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 5899999999999999998 56689999999999998888765542 123577777777764432 22222
Q ss_pred EEeCCcccccCh------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 178 IFDYTFFCAIEP------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 178 I~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
.+..+.-.|+-. -.-..++.+..-+|++||.++..+
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 221111111100 011578889999999999998765
No 245
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=3e-05 Score=56.15 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=86.1
Q ss_pred cHHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-
Q 026870 95 APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP- 171 (231)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 171 (231)
.+.++..+... ..+.++.+|+|+|.|+.....++.| ...+|+|+++..+.+++-+.-+.+......|..-|+.....
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 34455555544 2344899999999999999999988 48999999999999999888787777888999999988443
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
+-.+-+|| .+- +....+-.++..-|..+..++.+-|+..
T Consensus 138 dy~~vviF--gae-----s~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 138 DYRNVVIF--GAE-----SVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred ccceEEEe--ehH-----HHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 22344444 222 2334455667778889999999888774
No 246
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.04 E-value=2.6e-06 Score=65.07 Aligned_cols=104 Identities=19% Similarity=0.136 Sum_probs=72.9
Q ss_pred HHHHHHHcC----CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-
Q 026870 97 IIVHLHQSG----ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP- 171 (231)
Q Consensus 97 ~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 171 (231)
...+++... ...+.++||+|+|.|..+..++..-.+|++.|.|..|+...++.-. -.....+...
T Consensus 97 QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~y----------nVl~~~ew~~t 166 (288)
T KOG3987|consen 97 QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNY----------NVLTEIEWLQT 166 (288)
T ss_pred HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCC----------ceeeehhhhhc
Confidence 345555433 2234799999999999999998766689999999999988876321 1112222221
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCC-CcEEEEE
Q 026870 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP-DGELITL 212 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~li~~ 212 (231)
+-+||+|.|...+..- .+..++|+.+..+|+| +|.+++.
T Consensus 167 ~~k~dli~clNlLDRc--~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 167 DVKLDLILCLNLLDRC--FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred CceeehHHHHHHHHhh--cChHHHHHHHHHHhccCCCcEEEE
Confidence 2369999988776543 2336789999999999 8887764
No 247
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.99 E-value=6e-05 Score=58.67 Aligned_cols=110 Identities=24% Similarity=0.304 Sum_probs=77.1
Q ss_pred CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEe
Q 026870 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~I~~ 180 (231)
++.+||-+|.++|.....++. ....|+++|+|+......-...... +||-.+-.|...+. .-+..|+|++
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccEEEe
Confidence 467999999999999888876 4568999999997766555544443 47888999998842 1248999996
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCC
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~ 224 (231)
.-. .+++..-++.++...||+||.+++.--...-+.+.+|
T Consensus 150 DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p 189 (229)
T PF01269_consen 150 DVA----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADP 189 (229)
T ss_dssp E-S----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH
T ss_pred cCC----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH
Confidence 433 2355667788888999999999887655443434433
No 248
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=4.1e-05 Score=59.99 Aligned_cols=108 Identities=17% Similarity=0.076 Sum_probs=75.0
Q ss_pred cHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCce-EEEEccCCCCC
Q 026870 95 APIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFTWC 170 (231)
Q Consensus 95 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~~~ 170 (231)
...+...++.. ..++..+||+|+.||.++..+++.|+ +|+++|..-..+..--+ .++++ .+...|+....
T Consensus 64 ~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~l~ 137 (245)
T COG1189 64 GLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRYLT 137 (245)
T ss_pred HHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh------cCCcEEEEecCChhhCC
Confidence 34455566655 44668999999999999999999987 99999997643332111 22344 44556776644
Q ss_pred CC---CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 171 PT---ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~---~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
++ +..|+++|--.|.- ...+|-.+..+++|++.++..-
T Consensus 138 ~~~~~~~~d~~v~DvSFIS-----L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 138 PEDFTEKPDLIVIDVSFIS-----LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred HHHcccCCCeEEEEeehhh-----HHHHHHHHHHhcCCCceEEEEe
Confidence 32 36788887666643 3567888999999999876543
No 249
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.94 E-value=7.6e-05 Score=59.17 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=70.0
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026870 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~ 185 (231)
++.+|+|||||.-=++..... .+..++|+|++..+++.........+ .+.++...|+..-.+....|+.+..=+++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 368999999999888877665 46799999999999999998776665 35778888999877778899999877777
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
.+..+.+...+ ++.+.+ +...+++.|+..
T Consensus 183 ~le~q~~g~g~-~ll~~~--~~~~~vVSfPtr 211 (251)
T PF07091_consen 183 CLERQRRGAGL-ELLDAL--RSPHVVVSFPTR 211 (251)
T ss_dssp HHHHHSTTHHH-HHHHHS--CESEEEEEEES-
T ss_pred HHHHHhcchHH-HHHHHh--CCCeEEEecccc
Confidence 76433222222 233332 333555566553
No 250
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.92 E-value=2.8e-05 Score=56.88 Aligned_cols=57 Identities=19% Similarity=0.039 Sum_probs=47.2
Q ss_pred cEEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026870 111 RALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
.+||+|||.|..+..+++.+. +++++|+++.+++.++++...++.. ++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999999999988544 7999999999999999998766543 47777776665
No 251
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=5.1e-05 Score=65.53 Aligned_cols=101 Identities=22% Similarity=0.260 Sum_probs=73.7
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC------CceeEEEeCC
Q 026870 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT------ELFDLIFDYT 182 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~fD~I~~~~ 182 (231)
+..++|+-||+|.+++.+++...+|+|+|+++.++..|+.+...++.. |.+|+++-.++.++. ++-+++..
T Consensus 384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~i-- 460 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTPCCDSETLVAI-- 460 (534)
T ss_pred CcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhcccCCCCCceEEE--
Confidence 479999999999999999998889999999999999999999888764 699999966663321 12332221
Q ss_pred cccccCh---HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 183 FFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 183 ~~~~~~~---~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
++| -.-.++++.+...=.+--.+++++-..
T Consensus 461 ----iDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 461 ----IDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred ----ECCCcccccHHHHHHHHhccCccceEEEEcCHH
Confidence 121 112456666666666777777776544
No 252
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=9.5e-05 Score=60.10 Aligned_cols=100 Identities=25% Similarity=0.249 Sum_probs=67.7
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHH--Hh-cc-CC------------------------------
Q 026870 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE--LS-SS-LP------------------------------ 154 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~--~~-~~-~~------------------------------ 154 (231)
+.+||-.|||.|+++..|+..|..+-|=|+|--|+--..= +. .. +.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 4699999999999999999999888888887766522110 00 00 00
Q ss_pred -----CCCceEEEEccCCCCCCC----CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026870 155 -----NAKFVSFLKADFFTWCPT----ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 155 -----~~~~i~~~~~d~~~~~~~----~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
......+..||+.+.... +.||+|+..+.+.- ......+|+.+...|||||+.+
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCcEEE
Confidence 001223345677663322 36999997755432 2566789999999999999876
No 253
>PRK10742 putative methyltransferase; Provisional
Probab=97.81 E-value=0.00016 Score=57.45 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=62.6
Q ss_pred cEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC------C--CCCceEEEEccCCCCCC--CCceeEEEe
Q 026870 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL------P--NAKFVSFLKADFFTWCP--TELFDLIFD 180 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~------~--~~~~i~~~~~d~~~~~~--~~~fD~I~~ 180 (231)
+|||+-+|.|..+..++..|..|+++|-++......++++... . ...+++++++|..++.. ...||+|+.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL 170 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence 8999999999999999999999999999999998888776653 1 12468999999888432 347999998
Q ss_pred CCcccc
Q 026870 181 YTFFCA 186 (231)
Q Consensus 181 ~~~~~~ 186 (231)
-..|.|
T Consensus 171 DPMfp~ 176 (250)
T PRK10742 171 DPMFPH 176 (250)
T ss_pred CCCCCC
Confidence 766665
No 254
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.0002 Score=54.04 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=67.5
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCCC---------CCCC
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTW---------CPTE 173 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~---------~~~~ 173 (231)
.|+.+|||+||..|.++....+ +...|.|+|+-. +... ..++++.+ |+.++ .|..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~---~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPP---EGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCC---CCcccccccccCCHHHHHHHHHhCCCC
Confidence 4568999999999999988877 445899999832 2111 13566666 77662 3556
Q ss_pred ceeEEEeCCccccc--ChHHH-------HHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026870 174 LFDLIFDYTFFCAI--EPEMR-------AAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 174 ~fD~I~~~~~~~~~--~~~~~-------~~~l~~~~~~L~pgG~li~~~~~~~~~ 219 (231)
..|+|++-+....- ...+. ..++.-....++|+|.+++-.|..+++
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 89999986543221 11111 234444556789999999999987653
No 255
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=3.6e-05 Score=56.65 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=71.5
Q ss_pred CCCcEEEecCCC-chHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCC---CCCCCceeEEE
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFT---WCPTELFDLIF 179 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~---~~~~~~fD~I~ 179 (231)
.+.+|||+|.|- |..++.+|. +...|...|-+++.++..++....+. .-.++.....++.. .....+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 347999999996 555555555 55689999999999999888654431 11223222223222 22334899999
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
|...+.. ++.+..+++.+..+|+|.|.-++
T Consensus 109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 109 AADCLFF--DEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred eccchhH--HHHHHHHHHHHHHHhCcccceeE
Confidence 9988743 47889999999999999999544
No 256
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.69 E-value=0.0018 Score=51.20 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=67.4
Q ss_pred HHHcCCCCCCcEEEecCCCc-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC---Ccee
Q 026870 101 LHQSGALPKGRALVPGCGTG-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFD 176 (231)
Q Consensus 101 ~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~fD 176 (231)
+.....+.+++||-+|=..- .++..+.....+|+.+|+++..+++.++...+.++. |+.+..|+.++.|+ +.||
T Consensus 37 ~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD 114 (243)
T PF01861_consen 37 MAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFD 114 (243)
T ss_dssp HHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BS
T ss_pred HHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCC
Confidence 44445678899999995432 233333345669999999999999999988777654 99999999997765 5899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
++++.... +.+-..-++.+..+.||..|......|+.
T Consensus 115 ~f~TDPPy---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 115 VFFTDPPY---TPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp EEEE---S---SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred EEEeCCCC---CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 99975543 23667889999999999888655556554
No 257
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.68 E-value=0.00021 Score=58.85 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=53.9
Q ss_pred CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------C-CCCcee
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------C-PTELFD 176 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~-~~~~fD 176 (231)
..+++.++|.=-|.|..+..+++ ++.+++|+|.++.+++.+++++... .+++.++++++.+. . ....+|
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~d 95 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVD 95 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EE
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccC
Confidence 45668999999999999999987 4579999999999999999888755 46899999998882 1 224788
Q ss_pred EEEe
Q 026870 177 LIFD 180 (231)
Q Consensus 177 ~I~~ 180 (231)
.|+.
T Consensus 96 giL~ 99 (310)
T PF01795_consen 96 GILF 99 (310)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 258
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.67 E-value=0.00022 Score=58.49 Aligned_cols=107 Identities=22% Similarity=0.230 Sum_probs=80.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEE
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIF 179 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~I~ 179 (231)
..++.+|||+.++.|.-+..++. ....+++.|+++.-+...+++..+.+.. ++.....|.... .....||.|+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchhh
Confidence 56678999999999998888877 2359999999999999999998887654 577777777664 2234699999
Q ss_pred eCC------cccccC-------h-------HHHHHHHHHHHhhc----CCCcEEEEEE
Q 026870 180 DYT------FFCAIE-------P-------EMRAAWAQKIKDFL----KPDGELITLM 213 (231)
Q Consensus 180 ~~~------~~~~~~-------~-------~~~~~~l~~~~~~L----~pgG~li~~~ 213 (231)
.-. ++..-+ + ..+.++|+.+.+.+ +|||+|+..+
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 631 122111 1 13368999999999 9999988766
No 259
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=0.001 Score=54.06 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=61.3
Q ss_pred HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---
Q 026870 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--- 170 (231)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 170 (231)
+.+.+..+ ..+++..+|.=-|.|..+..+++.. .+++++|.++.+++.|++....+. +++++++.++.+..
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHH
Confidence 34444443 4456899999999999999999833 479999999999999999887754 68999999877721
Q ss_pred ---CCCceeEEEe
Q 026870 171 ---PTELFDLIFD 180 (231)
Q Consensus 171 ---~~~~fD~I~~ 180 (231)
..+.+|.|+.
T Consensus 90 ~~~~i~~vDGiL~ 102 (314)
T COG0275 90 KELGIGKVDGILL 102 (314)
T ss_pred HhcCCCceeEEEE
Confidence 1235666664
No 260
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00024 Score=54.03 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=71.5
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHH----HHH-HhccCCCCCceEEEEccCCCCCCCCceeE
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKK----AEE-LSSSLPNAKFVSFLKADFFTWCPTELFDL 177 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~----a~~-~~~~~~~~~~i~~~~~d~~~~~~~~~fD~ 177 (231)
..++.+|+|+=.|.|+++..++. +...|+++-..+...-. .+. .........|.+.+..++....+.+..|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 34668999999999999999987 22267766544331100 000 01111112345666666666556667777
Q ss_pred EEeCCcccc-----cChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 178 IFDYTFFCA-----IEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 178 I~~~~~~~~-----~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
++.....|. +.+....++.+.+.+.|||||++++.++...
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~ 170 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRAD 170 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 776544332 2345668889999999999999999988553
No 261
>PRK11524 putative methyltransferase; Provisional
Probab=97.52 E-value=0.00026 Score=58.17 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhc
Q 026870 93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS 151 (231)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~ 151 (231)
.|...+++++.....++..|||..||+|..+....+.|.+++|+|++++.++.|++++.
T Consensus 193 kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 193 KPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred ChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 34566788888777888999999999999999999999999999999999999999874
No 262
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.50 E-value=0.0015 Score=50.58 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=65.7
Q ss_pred CCcEEEecCCCchHHHHhcC--CC--CeEEEEeCChHHHHHHHHHhccCC------------------------------
Q 026870 109 KGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLP------------------------------ 154 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~--~~v~~iD~s~~~i~~a~~~~~~~~------------------------------ 154 (231)
+-++.|..||.|++.-.+.- .. .+|++.|+++.+++.|++|+.-..
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA 131 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA 131 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 36999999999998755543 22 389999999999999988876543
Q ss_pred ---------C--CCceEEEEccCCCCC------CCCceeEEEeCCccccc-------ChHHHHHHHHHHHhhcCCCcEEE
Q 026870 155 ---------N--AKFVSFLKADFFTWC------PTELFDLIFDYTFFCAI-------EPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 155 ---------~--~~~i~~~~~d~~~~~------~~~~fD~I~~~~~~~~~-------~~~~~~~~l~~~~~~L~pgG~li 210 (231)
. .....+.+.|++++. .....|+|+.-..+.++ +.+-...+|..+..+|.+++++.
T Consensus 132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence 1 123668888999832 23357999986554443 22445789999999996666666
Q ss_pred EEEc
Q 026870 211 TLMF 214 (231)
Q Consensus 211 ~~~~ 214 (231)
+++-
T Consensus 212 v~~k 215 (246)
T PF11599_consen 212 VSDK 215 (246)
T ss_dssp EEES
T ss_pred EecC
Confidence 6443
No 263
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.45 E-value=0.00024 Score=55.97 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHH
Q 026870 92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE 148 (231)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~ 148 (231)
..|...+++++.....++..|||..||+|..+....+.|.+.+|+|++++.++.|++
T Consensus 175 ~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 445666788888777788999999999999999999999999999999999998875
No 264
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00026 Score=60.08 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=59.1
Q ss_pred CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEe
Q 026870 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFD 180 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~I~~ 180 (231)
..|||||.|+|.++...++.|+ .|+++|.-..+.+.|++....++..++|.++.---.+..- ....|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 4899999999999999999776 8999999999999999999999999999998876666322 234666654
No 265
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.43 E-value=0.0024 Score=49.70 Aligned_cols=73 Identities=12% Similarity=0.017 Sum_probs=63.8
Q ss_pred CcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEeCC
Q 026870 110 GRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~I~~~~ 182 (231)
.++.|+||--+++..+|.+.+ ..+++.|+++..++.|.+++...++.++++...+|...... +..+|+|+...
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG 93 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG 93 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence 469999999999999999954 48999999999999999999999988999999999988554 44899988654
No 266
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=8.9e-05 Score=54.18 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=42.3
Q ss_pred CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 169 ~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
++.+.+.|+|++.+++.|+.-+....+++.+.+.|||||+|-+..-+.
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 566789999999999999998888999999999999999998866433
No 267
>PRK13699 putative methylase; Provisional
Probab=97.41 E-value=0.00046 Score=54.73 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc
Q 026870 92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152 (231)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~ 152 (231)
..|...++.++.....++..|||..||+|..+....+.|.+++|+|++++..+.+.+++..
T Consensus 147 ~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 147 EKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 3456667778876677889999999999999999999999999999999999999888754
No 268
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0034 Score=48.19 Aligned_cols=110 Identities=18% Similarity=0.201 Sum_probs=80.0
Q ss_pred CCCcEEEecCCCchHHHHhcC-C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEEeC
Q 026870 108 PKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY 181 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~-~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~I~~~ 181 (231)
++.+||=+|+.+|.....++. - ...++++|+++......-..+... +|+-.+..|+..+.. -+..|+|+.-
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccEEEEe
Confidence 458999999999999888877 2 247999999999877665555443 478888899888431 2468999853
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCC
Q 026870 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~ 224 (231)
-+ .+++..-+..+....|++||.+++.--..+-+.+..|
T Consensus 153 VA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp 191 (231)
T COG1889 153 VA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP 191 (231)
T ss_pred cC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH
Confidence 22 2355567788889999999988776665555555444
No 269
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.36 E-value=0.001 Score=51.53 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=54.6
Q ss_pred CCCCCcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---------
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--------- 170 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--------- 170 (231)
..++..|+|+|.-.|.-+..+|+ ...+|+|+|++-..... +..+.++..++|++++||..++.
T Consensus 30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 30 ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS-
T ss_pred HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhh
Confidence 34568999999999988877765 33599999996443222 22333445578999999988721
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
......+|+.-..-.| +...+.|+.+..++++|+++++.+
T Consensus 108 ~~~~~vlVilDs~H~~---~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 108 SPPHPVLVILDSSHTH---EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp ---SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ccCCceEEEECCCccH---HHHHHHHHHhCccCCCCCEEEEEe
Confidence 1123445553222111 222456788999999999998855
No 270
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.35 E-value=0.00052 Score=58.44 Aligned_cols=98 Identities=18% Similarity=0.106 Sum_probs=73.1
Q ss_pred CCcEEEecCCCchHHHHhcC--CC-CeEEEEeCChHHHHHHHHHhccCCCCC-ceEEEEccCCCCC--CCCceeEEEeCC
Q 026870 109 KGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWC--PTELFDLIFDYT 182 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~-~i~~~~~d~~~~~--~~~~fD~I~~~~ 182 (231)
+.+|||.-+|+|.=++..+. .+ .+|+.-|+|+++++..++|+..+++.+ ++++.+.|+.... ....||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID--- 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID--- 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE---
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE---
Confidence 35999999999977666665 34 489999999999999999998888777 6888888888844 567899996
Q ss_pred cccccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 183 FFCAIEP-EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 183 ~~~~~~~-~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
++| -....+|+...+.++.||.|.+..
T Consensus 127 ----lDPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 ----LDPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----E--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ----eCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 332 233568999999999999998754
No 271
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.29 E-value=0.001 Score=55.50 Aligned_cols=95 Identities=21% Similarity=0.181 Sum_probs=69.3
Q ss_pred CCCCCcEEEecCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeC
Q 026870 106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDY 181 (231)
Q Consensus 106 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~I~~~ 181 (231)
..|+.+|+-+|+| .|..+.++++ .|++|+++|.+++..+.|++.... .++...-.+... .+.||+|+..
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhHhhCcEEEEC
Confidence 4567899999988 3577788888 889999999999999999986532 344433111111 1249999965
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
.. . ..+....+.|++||.++++..++
T Consensus 237 v~-~--------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 237 VG-P--------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred CC-h--------hhHHHHHHHHhcCCEEEEECCCC
Confidence 44 2 23677889999999999998885
No 272
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0028 Score=51.42 Aligned_cols=106 Identities=22% Similarity=0.209 Sum_probs=78.3
Q ss_pred CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCC---CCCCceeEEE
Q 026870 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW---CPTELFDLIF 179 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~---~~~~~fD~I~ 179 (231)
++++||-||.|.|.+.+..++. -.++.-+|++...++..++...... -.+++.+.-||-..+ ...++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 4589999999999999888873 2389999999999998887654321 235788888887773 3467999999
Q ss_pred eCCcccccCh--HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 180 DYTFFCAIEP--EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 180 ~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
.-..=.-.+. -....+...+.+.||+||+++...
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 6433222222 234678889999999999988743
No 273
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.10 E-value=0.0035 Score=50.05 Aligned_cols=103 Identities=17% Similarity=0.052 Sum_probs=66.8
Q ss_pred CCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhcc-----CCCCCceEEEEccCCCCC----CCCc-eeE
Q 026870 109 KGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSS-----LPNAKFVSFLKADFFTWC----PTEL-FDL 177 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~-----~~~~~~i~~~~~d~~~~~----~~~~-fD~ 177 (231)
..+|||+|+|+|..+..++. .+.+|+..|.... +.....+... .+....+.....++.+.. .... ||+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 45799999999988888877 6678888887543 3333332111 112224555555555522 1223 999
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
|+++.++++. +....++..++..|..+|.+++..+
T Consensus 166 ilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 166 ILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 9999888664 4556678888888999995544443
No 274
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.03 E-value=0.0084 Score=53.06 Aligned_cols=120 Identities=20% Similarity=0.223 Sum_probs=80.0
Q ss_pred CcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC----C--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC
Q 026870 94 PAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS----P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166 (231)
Q Consensus 94 ~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~----~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 166 (231)
|.....-++..... +..+|+|..||+|.+.....+ . ...++|.|.++.....|+.++--++....+....+|-
T Consensus 171 P~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt 250 (489)
T COG0286 171 PREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT 250 (489)
T ss_pred hHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc
Confidence 34444444443322 446999999999988776655 2 2569999999999999999887776543345555555
Q ss_pred CC-CCC-----CCceeEEEeCCccc---c------------------cC-h-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 167 FT-WCP-----TELFDLIFDYTFFC---A------------------IE-P-EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 167 ~~-~~~-----~~~fD~I~~~~~~~---~------------------~~-~-~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
.. +.. ...||+|+++..+. + ++ . ..-..+++.+...|+|||..-++.
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 44 222 24799999875553 0 00 0 122688999999999998655443
No 275
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.99 E-value=0.0077 Score=50.64 Aligned_cols=108 Identities=14% Similarity=0.151 Sum_probs=60.2
Q ss_pred CcEEEecCCCchHHHHhcC------------CC------CeEEEEeCChHHHHHHHH-------HhccCCCCCceEEEEc
Q 026870 110 GRALVPGCGTGYDVVAMAS------------PE------RYVVGLEISDIAIKKAEE-------LSSSLPNAKFVSFLKA 164 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~------------~~------~~v~~iD~s~~~i~~a~~-------~~~~~~~~~~i~~~~~ 164 (231)
-+|+|+||..|.+++.+.. .+ ..|+.-|+-..=....-+ .....+ .--+.-+.+
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~-~~f~~gvpg 96 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR-NYFVSGVPG 96 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT-SEEEEEEES
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc-eEEEEecCc
Confidence 6999999999999877753 12 378888865432221111 111110 011344567
Q ss_pred cCCC-CCCCCceeEEEeCCcccccCh--------------------------H-----------HHHHHHHHHHhhcCCC
Q 026870 165 DFFT-WCPTELFDLIFDYTFFCAIEP--------------------------E-----------MRAAWAQKIKDFLKPD 206 (231)
Q Consensus 165 d~~~-~~~~~~fD~I~~~~~~~~~~~--------------------------~-----------~~~~~l~~~~~~L~pg 206 (231)
.+.+ .+|.++.|++++..++||++. + +...+|+.=++=|+||
T Consensus 97 SFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G 176 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPG 176 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred hhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 7777 788999999999999998641 0 1133444444578999
Q ss_pred cEEEEEEccCCC
Q 026870 207 GELITLMFPISD 218 (231)
Q Consensus 207 G~li~~~~~~~~ 218 (231)
|++++.....+.
T Consensus 177 G~mvl~~~gr~~ 188 (334)
T PF03492_consen 177 GRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEE-ST
T ss_pred cEEEEEEeeccc
Confidence 999887776554
No 276
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.94 E-value=0.00052 Score=55.58 Aligned_cols=99 Identities=13% Similarity=-0.008 Sum_probs=74.1
Q ss_pred CCcEEEecCCCchHHH-HhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026870 109 KGRALVPGCGTGYDVV-AMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~-~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~ 186 (231)
+..|.|+=+|-|++++ ++...|+ .|+++|.+|..++..+.+++.+.+.++..+..+|-..+.+....|-|....
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL---- 270 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL---- 270 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc----
Confidence 4799999999999999 7777776 899999999999999999988887778888888888887778888887432
Q ss_pred cChHHHHHHHHHHHhhcCCCc--EEEEEE
Q 026870 187 IEPEMRAAWAQKIKDFLKPDG--ELITLM 213 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG--~li~~~ 213 (231)
+|-. ++-.-...++|+|.| .+.|.+
T Consensus 271 lPSs--e~~W~~A~k~Lk~eggsilHIHe 297 (351)
T KOG1227|consen 271 LPSS--EQGWPTAIKALKPEGGSILHIHE 297 (351)
T ss_pred cccc--ccchHHHHHHhhhcCCcEEEEec
Confidence 2211 122334556666654 444433
No 277
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.94 E-value=0.0022 Score=53.08 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=78.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHH-------HHHhccCCCCC-ceEEEEccCCCC--CCCCce
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKA-------EELSSSLPNAK-FVSFLKADFFTW--CPTELF 175 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a-------~~~~~~~~~~~-~i~~~~~d~~~~--~~~~~f 175 (231)
..++..|+|..-|||.+....+..|+.|+|.|++-.++... +.|+..++..+ -+.+..+|..++ -....|
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 45778999999999999999999999999999999888732 34555555333 366788888883 235589
Q ss_pred eEEEeCCccc------------------------ccCh-------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 176 DLIFDYTFFC------------------------AIEP-------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 176 D~I~~~~~~~------------------------~~~~-------~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
|.|+|-..+. |.|. ...-.+|.-..+.|..||+|++..
T Consensus 286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 9999853221 2211 122466777789999999997643
No 278
>PHA01634 hypothetical protein
Probab=96.91 E-value=0.0029 Score=44.84 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=43.5
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCC
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP 154 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~ 154 (231)
...+++|+|||++.|.-++.++-.|+ .|++++.++...+..+++...+.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 45678999999999999999999887 89999999999999999876553
No 279
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0018 Score=53.76 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=68.3
Q ss_pred CCCCCcEEEecCCCchHHHHhcC--CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEE
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLI 178 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~I 178 (231)
...+.+|||+|.|.|.-+..+.. +.. .++.++.|+..-+.......... .....+...|+.. ..+...|+++
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCCccceeehh
Confidence 34567899999999988777665 333 67788888876555444322111 1122233333333 3445678887
Q ss_pred EeCCcccccC-hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 179 FDYTFFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+...-+-+.. ......+++.+..+++|||.|++++-..
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 7554443322 1233458999999999999999987543
No 280
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.86 E-value=0.036 Score=44.91 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=74.9
Q ss_pred CcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCC-C--------CCCCceeE
Q 026870 110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFT-W--------CPTELFDL 177 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~-~--------~~~~~fD~ 177 (231)
..|+.+|||--.-...+..+ +.+++=+|. |+.++.-++.+...+ ...+.+++..|+.+ + +.....-+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 57999999987666666543 345666665 556665555555422 23568889999863 1 11234567
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+++-.++.+++++...++++.+.+...||+.|++....+
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 888899999999999999999999988999887755443
No 281
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.85 E-value=0.0016 Score=51.57 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=47.2
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHH---HhccCCC-----CCceEEEEccCCCCC--CCCceeEEE
Q 026870 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE---LSSSLPN-----AKFVSFLKADFFTWC--PTELFDLIF 179 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~---~~~~~~~-----~~~i~~~~~d~~~~~--~~~~fD~I~ 179 (231)
.+|||.=+|-|..+..++..|.+|+++|-|+-.....+. +...... ..+|+++++|..++. +..+||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 499999999999999999889999999999887654443 2222111 147999999999954 356899999
Q ss_pred eCCcccc
Q 026870 180 DYTFFCA 186 (231)
Q Consensus 180 ~~~~~~~ 186 (231)
.-..|.+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 8776665
No 282
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.84 E-value=0.0098 Score=50.67 Aligned_cols=109 Identities=14% Similarity=0.187 Sum_probs=65.5
Q ss_pred CCcEEEecCCCchHHHHhcC-----------------CCCeEEEEeCChHHHHHHHHHhccC--------C----CCCc-
Q 026870 109 KGRALVPGCGTGYDVVAMAS-----------------PERYVVGLEISDIAIKKAEELSSSL--------P----NAKF- 158 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~~iD~s~~~i~~a~~~~~~~--------~----~~~~- 158 (231)
..+|+|+|||+|.+++.+.. +..+|..-|....=....-+.+... . ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 46999999999988766632 1246666675433222211111100 0 0001
Q ss_pred --eEEEEccCCC-CCCCCceeEEEeCCcccccCh--H----------------------------------HHHHHHHHH
Q 026870 159 --VSFLKADFFT-WCPTELFDLIFDYTFFCAIEP--E----------------------------------MRAAWAQKI 199 (231)
Q Consensus 159 --i~~~~~d~~~-~~~~~~fD~I~~~~~~~~~~~--~----------------------------------~~~~~l~~~ 199 (231)
+.-+.+.+.. .+|.++.+++++...+||++. + +...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223355666 778899999999999999752 1 123344444
Q ss_pred HhhcCCCcEEEEEEccCC
Q 026870 200 KDFLKPDGELITLMFPIS 217 (231)
Q Consensus 200 ~~~L~pgG~li~~~~~~~ 217 (231)
.+=|.|||++++......
T Consensus 224 a~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHhccCcEEEEEEecCC
Confidence 567899999988776654
No 283
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.80 E-value=0.0066 Score=47.59 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=61.8
Q ss_pred HHHHHHHHcC--CC--CCCcEEEecCCCchHHHHhc---CCCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEccCC
Q 026870 96 PIIVHLHQSG--AL--PKGRALVPGCGTGYDVVAMA---SPERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFF 167 (231)
Q Consensus 96 ~~~~~~~~~~--~~--~~~~vLDiGcG~G~~~~~l~---~~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~ 167 (231)
+.+.+++... .. ++.++||||.|..- .+.|. +.|.+.+|.|+++..++.|+..+..+ ++...|+.....-.
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnC-IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~ 140 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANC-IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDS 140 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCccc-ccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCc
Confidence 3355555543 12 34699999998742 33333 37889999999999999999988776 44455666554333
Q ss_pred C-CC-----CCCceeEEEeCCccccc
Q 026870 168 T-WC-----PTELFDLIFDYTFFCAI 187 (231)
Q Consensus 168 ~-~~-----~~~~fD~I~~~~~~~~~ 187 (231)
+ .+ ..+.||+.+|+..||..
T Consensus 141 ~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 141 DAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cccccccccccceeeeEecCCCcchh
Confidence 2 22 24689999999888753
No 284
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.76 E-value=0.013 Score=49.84 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=77.4
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCCCceeEE
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLI 178 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~fD~I 178 (231)
..++.+|||..+..|.=+..+|. ....|++.|.+..-+...+.++.+.++. +......|..++ ++. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCc-cccee
Confidence 45668999999999977777665 3347999999999999999998888754 455666666542 333 89999
Q ss_pred EeC----C--ccccc-----C---------hHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 179 FDY----T--FFCAI-----E---------PEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 179 ~~~----~--~~~~~-----~---------~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+.- . +..-- . ...+.++|....+++++||+|+.++=+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 843 2 11110 0 023468889999999999999876643
No 285
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.76 E-value=0.013 Score=51.91 Aligned_cols=98 Identities=18% Similarity=0.315 Sum_probs=66.0
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-----------C----
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----------W---- 169 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----------~---- 169 (231)
.++.+|+-+|||. |..+...++ .|..|+++|.+++.++.+++.-. ++...|..+ .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA--------~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA--------EFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC--------eEEEeccccccccccchhhhcchhH
Confidence 3578999999997 777777777 78899999999999998887321 222111100 0
Q ss_pred -------CCC--CceeEEEeCCcccccChHHHHHH-HHHHHhhcCCCcEEEEEEcc
Q 026870 170 -------CPT--ELFDLIFDYTFFCAIEPEMRAAW-AQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 170 -------~~~--~~fD~I~~~~~~~~~~~~~~~~~-l~~~~~~L~pgG~li~~~~~ 215 (231)
+.+ ..+|+|+.......-+ .+.+ .+++.+.++|||+++.+..+
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~---aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKP---APKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCccc---CcchHHHHHHHhcCCCCEEEEEccC
Confidence 011 3699999755432211 1233 48899999999998877664
No 286
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.0032 Score=54.89 Aligned_cols=104 Identities=22% Similarity=0.221 Sum_probs=74.0
Q ss_pred CcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCC
Q 026870 110 GRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 182 (231)
-.|+-+|+|-|=+.....+ +..+++++|-+|.++...+. .....+.++++++..|+..+.++ ++.|++++-.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 4789999999966544433 44589999999999988766 33334567899999999997764 8999998743
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.-..-+.+.-++=|.-+...|||+|+-+=..|
T Consensus 448 LGSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 448 LGSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred hccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 22211222224457888899999997764443
No 287
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.015 Score=48.67 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=59.1
Q ss_pred HHHHHcCCCC-CCcEEEecCCCchHHHHhcC----------CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCC
Q 026870 99 VHLHQSGALP-KGRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167 (231)
Q Consensus 99 ~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~----------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 167 (231)
...+.+...| +-.++|+|.|.|.++..+++ ...++..||+|++....-+++++... -.+....+.
T Consensus 67 ~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~----~~~~~~~~~ 142 (370)
T COG1565 67 LQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE----DLIRWVEWV 142 (370)
T ss_pred HHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc----cchhHHHHH
Confidence 3333344444 46899999999999988876 24589999999999999998886543 122333444
Q ss_pred CCCCCCceeEEEeCCcccccC
Q 026870 168 TWCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 168 ~~~~~~~fD~I~~~~~~~~~~ 188 (231)
+..|..-.-+|+++-++..+|
T Consensus 143 e~~p~~~~~i~~~NElfDAlP 163 (370)
T COG1565 143 EDLPKKFPGIVVSNELFDALP 163 (370)
T ss_pred HhccccCceEEEechhhcccc
Confidence 444444456677777777775
No 288
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.60 E-value=0.0055 Score=51.89 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=67.8
Q ss_pred CCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-CC----CCCCCCceeEEEe
Q 026870 109 KGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-FF----TWCPTELFDLIFD 180 (231)
Q Consensus 109 ~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~----~~~~~~~fD~I~~ 180 (231)
+.+|+-+|||. |..+..+++ .|. +|+.+|.++.-++.|++..... .+.....+ .. +......+|+++-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIE 244 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEEE
Confidence 35899999998 888877777 564 8999999999999999854321 11111111 11 1112236999995
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
... + ...+..+.++++|||.+.+.......
T Consensus 245 ~~G--~------~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 245 AVG--S------PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCC--C------HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 444 1 23688899999999999988877644
No 289
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.0018 Score=55.93 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=78.1
Q ss_pred CCCCcEEEecCCCchHHHHhcC--CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-----CCCCCceeEE
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~fD~I 178 (231)
.++.+|||.-|++|.-++..++ .|. .|++-|.++.+++..+++...++..+.+..-..|+.. ......||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 3457999999999998888887 444 8999999999999999999888766667777777666 2234689998
Q ss_pred EeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 179 FDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
= ++| -....||+...+.++.||.|++..
T Consensus 188 D-------LDPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 D-------LDPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred e-------cCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 6 332 122468999999999999998865
No 290
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.44 E-value=0.0051 Score=53.49 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=63.7
Q ss_pred CcEEEecCCCchHHHHhcCCCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCcc
Q 026870 110 GRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF 184 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~I~~~~~~ 184 (231)
..|+|..+|.|.++..|..... +|+-++ .+..+...-++ + +--.-.|+-+.+ .+.+||+|.+..+|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~-~~ntL~vIydR----G----LIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVS-GPNTLPVIYDR----G----LIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccC-CCCcchhhhhc----c----cchhccchhhccCCCCcchhheehhhhh
Confidence 5999999999999999988553 333331 12222222211 1 112234555533 34689999999888
Q ss_pred cccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 185 CAIEP-EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~-~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
..... -....+|-++-|.|+|+|.+++-+
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 77533 456788999999999999998854
No 291
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.37 E-value=0.0021 Score=44.16 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=29.7
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChH
Q 026870 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDI 141 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~ 141 (231)
.....|+|||.|.+...|.+.|+.-+|+|.-..
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R 91 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR 91 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence 469999999999999999999999999998543
No 292
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.35 E-value=0.012 Score=48.13 Aligned_cols=66 Identities=17% Similarity=0.033 Sum_probs=51.9
Q ss_pred cEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---CCceeEEEeCCc
Q 026870 111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTF 183 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~fD~I~~~~~ 183 (231)
+++|+.||.|.....+...|. .+.++|+++.+++..+.+.... ++.+|+.+... ...+|+++....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeCCC
Confidence 799999999999999988887 5788999999999998887421 56677777432 246999997643
No 293
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.28 E-value=0.027 Score=47.40 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=61.5
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCC
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~I~~~~ 182 (231)
.++.+||-.|||. |..+..+++ .|. +|+++|.+++.++.+++.-... -+.....++.+.. ..+.+|+|+...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~----vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK----LVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE----EecCCcccHHHHhccCCCCCEEEECC
Confidence 4567899999875 666777776 676 6999999999999887742111 0111111121211 123589998542
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
.- ...+....++|++||.++.....
T Consensus 244 G~--------~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 244 GH--------PSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred CC--------HHHHHHHHHHhhcCCEEEEEccC
Confidence 21 13466788899999999887653
No 294
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.065 Score=42.63 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=72.5
Q ss_pred CCcEEEecCCCchHHHHhcC----CCC--eEEEEeCChHHHHHHHH-HhccCCCCCceEEEEccCCCC---CCCCc-eeE
Q 026870 109 KGRALVPGCGTGYDVVAMAS----PER--YVVGLEISDIAIKKAEE-LSSSLPNAKFVSFLKADFFTW---CPTEL-FDL 177 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~----~~~--~v~~iD~s~~~i~~a~~-~~~~~~~~~~i~~~~~d~~~~---~~~~~-fD~ 177 (231)
+...+|+|+|+..-+..|.. .+. +++.+|++...+....+ ....++. -.+.-+.+|.... .+..+ ==.
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-LEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-CeEeehhhhHHHHHhcccCCCeEEE
Confidence 47999999999877766654 443 89999999988876443 3444431 1255566776662 22222 223
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
++....+.+++|+....++..+...|.||-++++
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 4445678899999999999999999999998876
No 295
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.14 E-value=0.039 Score=44.50 Aligned_cols=43 Identities=21% Similarity=0.065 Sum_probs=34.8
Q ss_pred CcEEEecCCCchHHHHhcC----C------CCeEEEEeCChHHHHHHHHHhcc
Q 026870 110 GRALVPGCGTGYDVVAMAS----P------ERYVVGLEISDIAIKKAEELSSS 152 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~----~------~~~v~~iD~s~~~i~~a~~~~~~ 152 (231)
.+|+|+|+|+|.++..+++ . ..+++.+|+|+.+.+..++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 6999999999999988875 1 24899999999999988888765
No 296
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.12 E-value=0.013 Score=48.10 Aligned_cols=110 Identities=22% Similarity=0.265 Sum_probs=73.1
Q ss_pred CcEEEecCCCchHHHHhcC--------------CC--------CeEEEEeCChHH--HHHHHHHhccC------------
Q 026870 110 GRALVPGCGTGYDVVAMAS--------------PE--------RYVVGLEISDIA--IKKAEELSSSL------------ 153 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--------------~~--------~~v~~iD~s~~~--i~~a~~~~~~~------------ 153 (231)
.+||.||.|.|.-...++. .+ .+++.+|+.+.. ++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999877665543 01 389999998763 44444433322
Q ss_pred ----CCCCceEEEEccCCCCCCCC--------ceeEEEeCCccccc---ChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 154 ----PNAKFVSFLKADFFTWCPTE--------LFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 154 ----~~~~~i~~~~~d~~~~~~~~--------~fD~I~~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
...-++.|.+.|+.....++ ..++|...++++-+ +...-.++|.++...++||..|+|++-+.++
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSY 247 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSY 247 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCc
Confidence 01125789999998854321 35565554444322 1234478999999999999999999977764
Q ss_pred C
Q 026870 219 H 219 (231)
Q Consensus 219 ~ 219 (231)
.
T Consensus 248 S 248 (315)
T PF11312_consen 248 S 248 (315)
T ss_pred h
Confidence 3
No 297
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.11 E-value=0.025 Score=44.68 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=70.6
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEE
Q 026870 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~I~ 179 (231)
.|+.+||=+|+++|.....+.. +..-|+++|.|+..=.....-..+ ..||-.+.-|+..+.. -.-.|+||
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk---RtNiiPIiEDArhP~KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK---RTNIIPIIEDARHPAKYRMLVGMVDVIF 231 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc---cCCceeeeccCCCchheeeeeeeEEEEe
Confidence 4568999999999988877766 445799999998643322211111 1367777777777432 12577777
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCC
Q 026870 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~ 224 (231)
+.-. .|++...+.-+....|++||.+++.-...--+++-++
T Consensus 232 aDva----qpdq~RivaLNA~~FLk~gGhfvisikancidstv~a 272 (317)
T KOG1596|consen 232 ADVA----QPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFA 272 (317)
T ss_pred ccCC----CchhhhhhhhhhhhhhccCCeEEEEEecccccccccH
Confidence 4221 1233334445667889999999887766655444433
No 298
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.09 E-value=0.004 Score=43.03 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=30.0
Q ss_pred ceeEEEeCCcc--ccc--ChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 174 LFDLIFDYTFF--CAI--EPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 174 ~fD~I~~~~~~--~~~--~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
.||+|+|..+. .|+ .++-...+++++.+.|+|||.|++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 49999998874 343 3466788999999999999999763
No 299
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=96.06 E-value=0.076 Score=40.59 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=73.0
Q ss_pred CCCCCcEEEecCCCchHHHHhcC----CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--------
Q 026870 106 ALPKGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------- 171 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~----~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------- 171 (231)
.+.+..|+|+|.--|.-++++|. .| .+|+++|++-...+-+... .++|.|+.++-.++..
T Consensus 67 ~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~ 140 (237)
T COG3510 67 ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLK 140 (237)
T ss_pred hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHh
Confidence 45668999999999988877775 45 6999999987665443322 1479999999888431
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
.+.--+.+|...-|+. +..-+.|+.+..+|..|-++++.+-.-++
T Consensus 141 ~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 141 NEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred cCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 2222444454555554 44456788889999999999886654443
No 300
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.88 E-value=0.02 Score=44.87 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=65.3
Q ss_pred CcEEEecCCCchHHHHhcC--------CCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---------
Q 026870 110 GRALVPGCGTGYDVVAMAS--------PER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--------- 169 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--------~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------- 169 (231)
.+++|+.+..|.++..|.+ .+. .++++|+.+.+ .. ..+.-+++|+...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------PI---~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------PI---EGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------cc---CceEEeecccCCHhHHHHHHHH
Confidence 6999999999999988875 122 39999996642 11 2467788999882
Q ss_pred CCCCceeEEEeCCc-----ccccCh----HHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 170 CPTELFDLIFDYTF-----FCAIEP----EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 170 ~~~~~fD~I~~~~~-----~~~~~~----~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+-.+..|+|+|-.+ +|.++. +.+...|.-...+|+|||.++.--
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 23458999999754 444432 344566677778999999987533
No 301
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.85 E-value=0.0024 Score=51.52 Aligned_cols=106 Identities=18% Similarity=0.141 Sum_probs=64.0
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHH-HHhc--------cCCCCCceEEEEc---cCCCCCCC
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAE-ELSS--------SLPNAKFVSFLKA---DFFTWCPT 172 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~-~~~~--------~~~~~~~i~~~~~---d~~~~~~~ 172 (231)
...+++|||+|||+|.........+ ..+...|++.+.++.-. .+.. ......-..+..- |+.-....
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 4567899999999999988888877 58999999998873211 0000 0000000112222 22111111
Q ss_pred -CceeEEEeCCcccccChHHHHHH-HHHHHhhcCCCcEEEEEE
Q 026870 173 -ELFDLIFDYTFFCAIEPEMRAAW-AQKIKDFLKPDGELITLM 213 (231)
Q Consensus 173 -~~fD~I~~~~~~~~~~~~~~~~~-l~~~~~~L~pgG~li~~~ 213 (231)
..||+|.+.-.++..+. +..+ +.....+++++|++++..
T Consensus 194 ~~~ydlIlsSetiy~~~~--~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDS--LAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhCcch--hhhhHhhhhhhcCCccchhhhhh
Confidence 27899988777665533 2233 566677889999887754
No 302
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.84 E-value=0.024 Score=46.73 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=67.1
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC-----CC----CCCCCc
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-----FT----WCPTEL 174 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-----~~----~~~~~~ 174 (231)
.++.+||-+|+|. |..+...++ .|+ +|+.+|+++..++.|++ +... .+....... .+ ..-...
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~----~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT----VTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe----EEeeccccccHHHHHHHHHhhccccC
Confidence 3467999999997 777777777 665 99999999999999999 3221 122222111 11 111235
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 175 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
+|+.|.....+ .-++.....++.||.+++..+..+.
T Consensus 243 ~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 243 PDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred CCeEEEccCch--------HHHHHHHHHhccCCEEEEeccCCCc
Confidence 88888655443 2356678899999998888876643
No 303
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.78 E-value=0.04 Score=44.22 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=62.3
Q ss_pred CCcEEEecCCCchHHHHhcC-------CCCeEEEEeCCh--------------------------HHHHHHHHHhccCCC
Q 026870 109 KGRALVPGCGTGYDVVAMAS-------PERYVVGLEISD--------------------------IAIKKAEELSSSLPN 155 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~-------~~~~v~~iD~s~--------------------------~~i~~a~~~~~~~~~ 155 (231)
++.|+|.||-.|..+..++. .+.+++++|.-+ ...+..++++...++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 48999999999987755432 234788877422 134445556655543
Q ss_pred -CCceEEEEccCCCCCCCCceeEEEeCCcccccCh---HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 156 -AKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 156 -~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
.+++.++.|.+.+..+..+.+-| ++-|++- +.-...|..+...|.|||++++-+|..
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~I----All~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERI----ALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--E----EEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CcccEEEECCcchhhhccCCCccE----EEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 45899999999885443222211 2333432 344678899999999999999988764
No 304
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.032 Score=46.83 Aligned_cols=98 Identities=19% Similarity=0.077 Sum_probs=71.7
Q ss_pred CCcEEEecCCCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCcc
Q 026870 109 KGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFF 184 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~I~~~~~~ 184 (231)
..+|+|.-+|+|.=++..+. .+. +++.-|+||.+++.+++|+..+.. .+...++.|....... ..||+|=. ..|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi-DPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI-DPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec-CCC
Confidence 57999999999977777665 444 899999999999999999987732 2355666676664333 67888842 222
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
. ....+++...+.++.||+|.+..
T Consensus 131 G-----SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 131 G-----SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred C-----CCchHHHHHHHHhhcCCEEEEEe
Confidence 1 11357888899999999987754
No 305
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.73 E-value=0.029 Score=48.11 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=65.7
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-CCC----CCCCCceeEEE
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-FFT----WCPTELFDLIF 179 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~----~~~~~~fD~I~ 179 (231)
++.+||..|||. |..+..+++ .|. +++++|.+++..+.+++.... ..+.....+ +.. ......+|+|+
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~----~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA----ETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc----EEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 457999999988 888888887 665 699999999999988875311 111111111 111 22234699998
Q ss_pred eCCccc-------cc------ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 180 DYTFFC-------AI------EPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 180 ~~~~~~-------~~------~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
....-. ++ +..+....+..+.++|+++|.++....
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 743111 11 111224567888999999999987653
No 306
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=95.64 E-value=0.029 Score=47.95 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=53.9
Q ss_pred CceEEEEccCCCC---CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 157 KFVSFLKADFFTW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 157 ~~i~~~~~d~~~~---~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+++++..+++.+. .+++++|.++....+.+++++...+.++.+.+.++|||++++-....
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 6899999999993 35789999999999999999999999999999999999999876654
No 307
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.62 E-value=0.0063 Score=45.03 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=55.2
Q ss_pred CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHH-HHHhccCCCCCceEEEEccCCC-C-CCCCceeEEEeCCccc
Q 026870 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKA-EELSSSLPNAKFVSFLKADFFT-W-CPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a-~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 185 (231)
++++-+|...=-.=...+..|+ +++.+|.++--++.- +.++ ..+...|+.. + ...++||++.|..+++
T Consensus 3 ~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~siE 74 (177)
T PF03269_consen 3 KSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSIE 74 (177)
T ss_pred ceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechhc
Confidence 5667777653222222223454 788888876322211 1111 1222233332 1 2346899999999998
Q ss_pred cc---------ChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 186 AI---------EPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 186 ~~---------~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
|. ++.--.+.+.++..+|||||.|++..
T Consensus 75 h~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 75 HFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred cccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 85 22223567889999999999887643
No 308
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.60 E-value=0.0067 Score=43.32 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=60.0
Q ss_pred CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCceeEEEeCCcccccCh
Q 026870 118 GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDLIFDYTFFCAIEP 189 (231)
Q Consensus 118 G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD~I~~~~~~~~~~~ 189 (231)
|.|..+..+++ .|.+|+++|.++...+.+++.... .++..+-.+ ......+|+|+....-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~-------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~----- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD-------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS----- 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES-------EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc-------ccccccccccccccccccccccceEEEEecCc-----
Confidence 35778888887 789999999999999999875421 233332222 2333579999954331
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 190 EMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 190 ~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
...++....+|+++|.++++....
T Consensus 69 ---~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ---GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ---HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ---HHHHHHHHHHhccCCEEEEEEccC
Confidence 246788999999999999888766
No 309
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.60 E-value=0.058 Score=45.58 Aligned_cols=97 Identities=27% Similarity=0.227 Sum_probs=60.4
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeC---ChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeC
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEI---SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~---s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~ 181 (231)
.++.+||-+|+|. |..+..+++ .|.+|++++. +++..+.+++.-.. .+.....+..+......+|+|+..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-----~v~~~~~~~~~~~~~~~~d~vid~ 245 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-----YVNSSKTPVAEVKLVGEFDLIIEA 245 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-----EecCCccchhhhhhcCCCCEEEEC
Confidence 3567999999875 677777777 7778999986 67777777653211 011111111110112468999854
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
..- ...+....+.|+++|.+++.....
T Consensus 246 ~g~--------~~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 246 TGV--------PPLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred cCC--------HHHHHHHHHHccCCcEEEEEecCC
Confidence 321 125677889999999988776554
No 310
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.52 E-value=0.14 Score=41.55 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=73.0
Q ss_pred cCCCCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC---CceeEE
Q 026870 104 SGALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFDLI 178 (231)
Q Consensus 104 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~fD~I 178 (231)
...+.++.|+-+| -.-..+++++-.+ .++..+|+++..+++..+..++.+.. ++..+..|+.+++|+ ..||++
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHHHhhCCee
Confidence 3466778899999 5555555555533 48999999999999999888777643 589999999998875 489999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCC---cEEEEEE
Q 026870 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD---GELITLM 213 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg---G~li~~~ 213 (231)
+.-..- -+ .....++.+=...||.- |++.+..
T Consensus 226 iTDPpe-Ti--~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 226 ITDPPE-TI--KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred ecCchh-hH--HHHHHHHhccHHHhcCCCccceEeeee
Confidence 842211 11 23345555555667666 6665543
No 311
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.40 E-value=0.2 Score=34.83 Aligned_cols=87 Identities=17% Similarity=0.059 Sum_probs=58.5
Q ss_pred CCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCCccccc
Q 026870 117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYTFFCAI 187 (231)
Q Consensus 117 cG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~I~~~~~~~~~ 187 (231)
||.|..+..+++ .+..|+.+|.+++.++.+++.. +.++.+|..+.. .-..++.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 555667766665 4558999999999988887643 678999999821 224688777432
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 188 EPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+.+.....+....+.+.|...+++....+
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 23444455666777788888887766543
No 312
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.34 E-value=0.033 Score=46.36 Aligned_cols=92 Identities=23% Similarity=0.321 Sum_probs=60.8
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCceeEE
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDLI 178 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD~I 178 (231)
++.+||..|+|. |..+..+++ .|.+|++++.+++..+.+++.-. +.+..+... ......+|++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGA--------DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC--------CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 456888888763 777777777 78899999999998888865321 111111111 1234579998
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+..... ...++.+.+.|+++|.++.....
T Consensus 237 id~~g~--------~~~~~~~~~~l~~~G~~v~~g~~ 265 (338)
T cd08254 237 FDFVGT--------QPTFEDAQKAVKPGGRIVVVGLG 265 (338)
T ss_pred EECCCC--------HHHHHHHHHHhhcCCEEEEECCC
Confidence 853221 23567788999999999876553
No 313
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.14 E-value=0.11 Score=43.10 Aligned_cols=87 Identities=18% Similarity=0.116 Sum_probs=56.8
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
++.+||-+|||. |..+..+++ .|.+ ++++|.+++.++.+.... ++ |..+. ....+|+|+....-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----------~i--~~~~~-~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----------VL--DPEKD-PRRDYRAIYDASGD 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----------cc--Chhhc-cCCCCCEEEECCCC
Confidence 456899999875 777777776 6774 777898887776664321 11 10010 12468999854321
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
...+..+.+.|+++|++++..+.
T Consensus 211 --------~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 211 --------PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred --------HHHHHHHHHhhhcCcEEEEEeec
Confidence 13467788899999999887654
No 314
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=95.12 E-value=0.079 Score=43.66 Aligned_cols=90 Identities=17% Similarity=0.161 Sum_probs=61.7
Q ss_pred cHHHHHHHHcCCCCCC---cEEEecCCCchHHHHhc--CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-
Q 026870 95 APIIVHLHQSGALPKG---RALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT- 168 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~---~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~- 168 (231)
-+.+.+++........ +-+|||.|+.-.--.+- ..+...+++|+++..+..|.++...+++.+.+.+++.+-..
T Consensus 86 ihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~kt 165 (419)
T KOG2912|consen 86 IHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKT 165 (419)
T ss_pred HHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhh
Confidence 3456777765532222 35899988753322222 25678999999999999999999998888778777764433
Q ss_pred -------CCCCCceeEEEeCCcc
Q 026870 169 -------WCPTELFDLIFDYTFF 184 (231)
Q Consensus 169 -------~~~~~~fD~I~~~~~~ 184 (231)
..++..||+++|+..|
T Consensus 166 ll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 166 LLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred cchhhhccCccceeeEEecCCch
Confidence 2234569999998654
No 315
>PTZ00357 methyltransferase; Provisional
Probab=95.10 E-value=0.084 Score=47.98 Aligned_cols=94 Identities=18% Similarity=0.130 Sum_probs=59.7
Q ss_pred cEEEecCCCchHHHHhcC----CC--CeEEEEeCChHHHHHHHHHh-ccCCC-------CCceEEEEccCCCCCCC----
Q 026870 111 RALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELS-SSLPN-------AKFVSFLKADFFTWCPT---- 172 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~----~~--~~v~~iD~s~~~i~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~---- 172 (231)
.|+-+|+|-|=+....++ .+ .+++++|-++..+.....+. ....+ ..+++++..|+.++..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 689999999977655544 33 48999999976554444332 11122 34699999999996432
Q ss_pred --------CceeEEEeCC--cc--cccChHHHHHHHHHHHhhcCC----CcE
Q 026870 173 --------ELFDLIFDYT--FF--CAIEPEMRAAWAQKIKDFLKP----DGE 208 (231)
Q Consensus 173 --------~~fD~I~~~~--~~--~~~~~~~~~~~l~~~~~~L~p----gG~ 208 (231)
+.+|+|++-. .| .-++|+- |..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPEC----LDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPEC----LEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHH----HHHHHHhhhhhcccccc
Confidence 2699999842 22 2245554 4555555554 665
No 316
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.04 E-value=0.35 Score=40.03 Aligned_cols=103 Identities=12% Similarity=0.150 Sum_probs=77.0
Q ss_pred CcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCC--CCceEEEEccCCC--C---CC-----CCcee
Q 026870 110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFT--W---CP-----TELFD 176 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~--~---~~-----~~~fD 176 (231)
..|+-+|||--.-...+-.+ +.+|+-+|. |+.++.=++.+.+.+. ....+++..|+.+ + .. ...--
T Consensus 94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt 172 (297)
T COG3315 94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPT 172 (297)
T ss_pred cEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCe
Confidence 68999999876555555443 467888887 7777776666665532 2368999999994 1 12 33456
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
++++-.++.+++++...+++..+.....||..+++..
T Consensus 173 ~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 173 LWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 7888999999999999999999999999998776544
No 317
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.91 E-value=0.033 Score=47.58 Aligned_cols=65 Identities=12% Similarity=-0.055 Sum_probs=56.9
Q ss_pred CCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCc-eEEEEccCCCC
Q 026870 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTW 169 (231)
Q Consensus 105 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~-i~~~~~d~~~~ 169 (231)
...++..|.|+.||.|-++..++..+..|++-|.++++++..+.++..+.+.+. +.+...|....
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 456778999999999999999999999999999999999999999988877665 88888876663
No 318
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.87 E-value=0.063 Score=44.92 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=59.0
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEcc---CCCCCCCCceeEEEe
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~fD~I~~ 180 (231)
.++.+||-.|+|. |..+..+++ .|.+ |++++.+++..+.+++.-... -+.....+ +.+......+|+|+.
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~----~i~~~~~~~~~~~~~~~~~~~d~vid 237 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF----VINSGQDDVQEIRELTSGAGADVAIE 237 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE----EEcCCcchHHHHHHHhCCCCCCEEEE
Confidence 4567899898764 555666666 7777 999999999888886532110 01111111 111122336999984
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
...- ...+....+.|+++|.+++....
T Consensus 238 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 238 CSGN--------TAARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred CCCC--------HHHHHHHHHHhhcCCEEEEEcCC
Confidence 3221 12356677889999999877654
No 319
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.83 E-value=0.12 Score=41.23 Aligned_cols=95 Identities=19% Similarity=0.157 Sum_probs=60.6
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC------CCCCCceeEE
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT------WCPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~------~~~~~~fD~I 178 (231)
.++.+||..|+|. |..+..+++ .|.++++++.++...+.+++.... .++.....+ ......+|++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCEE
Confidence 4567999999986 666666666 778999999998887777553211 111111111 1123579999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+....-. ..+..+.+.|+++|.++......
T Consensus 206 i~~~~~~--------~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 206 IDAVGGP--------ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred EECCCCH--------HHHHHHHHhcccCCEEEEEccCC
Confidence 8543210 24567788999999988765443
No 320
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.81 E-value=0.29 Score=41.24 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=73.0
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCC------CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---------
Q 026870 106 ALPKGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--------- 170 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~------~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--------- 170 (231)
..|+.+|||..+..|.=+..|++.. ..|++=|.++.-+....+.....+ ..++.+...++....
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence 3467899999999999888887722 279999999998888777664332 234444444444311
Q ss_pred -CCCceeEEEeCC------cccccC---------------hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 171 -PTELFDLIFDYT------FFCAIE---------------PEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 171 -~~~~fD~I~~~~------~~~~~~---------------~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
....||-|+|-- ++.+-+ +..+..+|.+-.++||+||.|+.++=+.
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 123699988731 111100 1233678999999999999998776443
No 321
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.79 E-value=0.15 Score=42.82 Aligned_cols=93 Identities=15% Similarity=0.101 Sum_probs=58.8
Q ss_pred CCCCcEEEecCCC-chHHHHhcC--C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~--~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~ 182 (231)
.++.+||-+|||. |..+..+++ . +.+|+++|.+++-++.+++ ... ...+ .+ ......+|+|+...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~------~~~~-~~---~~~~~g~d~viD~~ 230 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE------TYLI-DD---IPEDLAVDHAFECV 230 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc------eeeh-hh---hhhccCCcEEEECC
Confidence 4568999999876 556556555 3 3589999999988888765 211 1111 11 11112589998533
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
.-. .....+....++|+++|++++..+.
T Consensus 231 G~~-----~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 231 GGR-----GSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred CCC-----ccHHHHHHHHHhCcCCcEEEEEeec
Confidence 210 0124577888999999999887754
No 322
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.73 E-value=0.071 Score=43.51 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=59.3
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEE-ccC----CCCCCCCceeEE
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADF----FTWCPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-~d~----~~~~~~~~fD~I 178 (231)
.++.+||-+|+|. |..+..+++ .|.+ |+++|.+++..+.+++.-... ++. .+. .+......+|++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~-------~i~~~~~~~~~~~~~~~~g~d~v 191 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA-------LAEPEVLAERQGGLQNGRGVDVA 191 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE-------ecCchhhHHHHHHHhCCCCCCEE
Confidence 3567999998865 666666666 6775 999999998888887642211 111 111 111123468999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
+....- ...+....+.|+++|.+++...
T Consensus 192 id~~G~--------~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 192 LEFSGA--------TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred EECCCC--------hHHHHHHHHHhcCCCEEEEecc
Confidence 843211 2346778899999999987764
No 323
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.70 E-value=0.1 Score=45.08 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=62.9
Q ss_pred HHHHHHcC--CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026870 98 IVHLHQSG--ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 98 ~~~~~~~~--~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
+..+++.. .+++.+|+-+|||. |.....+++ .|.+|+.+|.++...+.|.+.- .+.. +..+.. .
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G--------~~~~--~~~e~v--~ 256 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG--------YEVM--TMEEAV--K 256 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC--------CEEc--cHHHHH--c
Confidence 44455543 35779999999997 776666665 7889999999998877776521 1111 111221 3
Q ss_pred ceeEEEeCCcccccChHHHHHHHHH-HHhhcCCCcEEEEEEc
Q 026870 174 LFDLIFDYTFFCAIEPEMRAAWAQK-IKDFLKPDGELITLMF 214 (231)
Q Consensus 174 ~fD~I~~~~~~~~~~~~~~~~~l~~-~~~~L~pgG~li~~~~ 214 (231)
.+|+|+....- ...+.. ..+.+++||+++....
T Consensus 257 ~aDVVI~atG~--------~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 257 EGDIFVTTTGN--------KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCCEEEECCCC--------HHHHHHHHHhcCCCCcEEEEeCC
Confidence 57999864321 123443 4889999999977654
No 324
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.65 E-value=0.082 Score=44.77 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHH----------HhccCCCCCceEEE
Q 026870 96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEE----------LSSSLPNAKFVSFL 162 (231)
Q Consensus 96 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~----------~~~~~~~~~~i~~~ 162 (231)
..+..+.++... ++....|+|.|.|....+++..+ ..-+|+++.+..-+.+.. .+... ...+..+
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~--~~~~~~i 256 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK--PNKIETI 256 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC--cCceeec
Confidence 345556666544 45799999999999999988733 366777776554433322 22221 2357888
Q ss_pred EccCCCCC----CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 163 KADFFTWC----PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 163 ~~d~~~~~----~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
++++.++. .....++|+.+.+. ++++...+ +.++..-+++|.+++-
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVA--FDPELKLR-SKEILQKCKDGTRIIS 306 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEeccc--CCHHHHHh-hHHHHhhCCCcceEec
Confidence 88888832 12368899988775 44444333 4589999999999875
No 325
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.62 E-value=0.61 Score=34.92 Aligned_cols=106 Identities=22% Similarity=0.210 Sum_probs=71.2
Q ss_pred cHHHHHHHHcCCCCCCcEEEecCCCchHHHHh-cCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--C
Q 026870 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAM-ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--P 171 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l-~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~ 171 (231)
...+.+.+.....+..+|+-|||=+-...+.- ...+.+++..|++...-... ++ .|..-|...+. +
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~----------~~-~F~fyD~~~p~~~~ 80 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG----------GD-EFVFYDYNEPEELP 80 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC----------Cc-ceEECCCCChhhhh
Confidence 33444444443455689999999887666655 33566899999988753322 12 35555555521 1
Q ss_pred ---CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 172 ---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 172 ---~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
.++||+|++-..+ ++.+-..+....+.-++++++.+++++
T Consensus 81 ~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 81 EELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred hhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 4689999987776 666777788788888889988887754
No 326
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.58 E-value=0.39 Score=40.18 Aligned_cols=91 Identities=18% Similarity=0.078 Sum_probs=59.1
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
.++.+||-.|+|. |..+..+++ .|.+|++++.+++..+.+++.-... ++. ..+. ..+.+|+++.....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-------vi~--~~~~-~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-------AGG--AYDT-PPEPLDAAILFAPA 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-------ecc--cccc-CcccceEEEECCCc
Confidence 3567999999764 555666666 7889999999999888887743211 111 1111 12357876632221
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
...+....+.|+++|++++....
T Consensus 234 --------~~~~~~~~~~l~~~G~~v~~G~~ 256 (329)
T TIGR02822 234 --------GGLVPPALEALDRGGVLAVAGIH 256 (329)
T ss_pred --------HHHHHHHHHhhCCCcEEEEEecc
Confidence 12467788999999999887764
No 327
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=94.56 E-value=0.054 Score=47.03 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=63.4
Q ss_pred CCCCCcEEEecCCC-chHHHHhc-C-CCCeEE------EEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026870 106 ALPKGRALVPGCGT-GYDVVAMA-S-PERYVV------GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~~~~l~-~-~~~~v~------~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD 176 (231)
.+.+++|+-||||+ |. +..+- + .|.+|+ ++|......+.|.+. + . ...++.+.. ...|
T Consensus 33 ~LkgKtIaIIGyGSqG~-AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d----G----F--~v~~~~Ea~--~~AD 99 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGL-NQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN----G----F--KVGTYEELI--PQAD 99 (487)
T ss_pred HhCCCEEEEEccCHHHH-HHhCCCccccceeEEeccccccccccchHHHHHhc----C----C--ccCCHHHHH--HhCC
Confidence 35568999999998 55 32222 2 566777 667767766666543 1 1 123333332 3578
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE-ccCCCCCCCCCCCCC
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM-FPISDHVGGPPYKVS 228 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~-~~~~~~~~~~~~~~~ 228 (231)
+|+. .+|++....+.+++...||||..|.+.+ |..-...--||-+++
T Consensus 100 vVvi-----LlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~~i~~~~dvd 147 (487)
T PRK05225 100 LVIN-----LTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEVGEQIRKDIT 147 (487)
T ss_pred EEEE-----cCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeCceeCCCCCc
Confidence 8883 2455556777799999999999987643 433332223454443
No 328
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.42 E-value=0.063 Score=45.44 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=60.0
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD 176 (231)
.++.+||-.|||. |..+..+++ .|. +|+++|.+++..+.+++.-. + .++.. +..+ ......+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga-----~--~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA-----T--HTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-----c--eEEcCCCcCHHHHHHHHhCCCCCC
Confidence 3567999999865 666677776 777 59999999998888865321 1 12211 1111 11223689
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+|+....- ...+....+.+++||++++....
T Consensus 248 ~vid~~g~--------~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 248 VVIDAVGR--------PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred EEEECCCC--------HHHHHHHHHHhccCCEEEEECCC
Confidence 99853221 12356677899999999877654
No 329
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.41 E-value=0.19 Score=46.37 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=62.6
Q ss_pred CcEEEecCCCchHHHHhcC---------C-----CCeEEEEeCCh---HHHHHHH-----------HHhccC-----CC-
Q 026870 110 GRALVPGCGTGYDVVAMAS---------P-----ERYVVGLEISD---IAIKKAE-----------ELSSSL-----PN- 155 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~---------~-----~~~v~~iD~s~---~~i~~a~-----------~~~~~~-----~~- 155 (231)
-+|+|+|-|+|.+.+...+ + ..+++++|..| +-+..+. +..... +.
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 6999999999987665542 1 13899999654 2222221 111110 10
Q ss_pred -----C--CceEEEEccCCCCCC--CCceeEEEeCCcccccChH-HHHHHHHHHHhhcCCCcEEEEEE
Q 026870 156 -----A--KFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPE-MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 156 -----~--~~i~~~~~d~~~~~~--~~~fD~I~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
. -++++..+|+.+..+ ...||+|+.-.+-..-.|+ =...+++.+.++++|||.+...+
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1 145577788877332 2469999965432221111 11578999999999999987544
No 330
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.39 E-value=0.38 Score=33.58 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=57.5
Q ss_pred CcEEEecCCCc-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCcccc
Q 026870 110 GRALVPGCGTG-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCA 186 (231)
Q Consensus 110 ~~vLDiGcG~G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~I~~~~~~~~ 186 (231)
++|.|+|-|.= ..+..|++.|..++++|+++. .+. ..+.|...|++++... ...|+|++..
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~---------~g~~~v~DDitnP~~~iY~~A~lIYSiR---- 78 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP---------EGLRFVVDDITNPNISIYEGADLIYSIR---- 78 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc---------ccceEEEccCCCccHHHhhCccceeecC----
Confidence 59999999874 456677779999999999887 111 2378999999996432 4689998633
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
++.+....+-.+.+.+ |.-+++.....
T Consensus 79 -pppEl~~~ildva~aV--ga~l~I~pL~G 105 (129)
T COG1255 79 -PPPELQSAILDVAKAV--GAPLYIKPLTG 105 (129)
T ss_pred -CCHHHHHHHHHHHHhh--CCCEEEEecCC
Confidence 2233334444444443 34455544433
No 331
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.23 E-value=0.17 Score=42.41 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=64.6
Q ss_pred CCCcEEEecCC--CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEe
Q 026870 108 PKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG--~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~I~~ 180 (231)
++.+||-.|+. .|.++.+|++ .|..++++--+++-.+.+++..... -+.+...|+.+ ......+|+|+.
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~----vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADH----VINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCE----EEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 46799999844 4688888888 6667888888887777666654322 13334444444 222347999995
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
.-. ...+......|+++|.++.+....
T Consensus 218 ~vG---------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 218 TVG---------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence 332 234667889999999998877765
No 332
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.20 E-value=0.09 Score=44.76 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=59.3
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-C--CCCCceeEEEe
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-W--CPTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~fD~I~~ 180 (231)
.++.+||-.|+|. |..+..+++ .|. +|+++|.+++..+.+++.-... -+.....+..+ . ...+.+|+|+.
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~i~~~~~~g~d~vid 265 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA----TVNAGDPNAVEQVRELTGGGVDYAFE 265 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce----EeCCCchhHHHHHHHHhCCCCCEEEE
Confidence 3457888899865 666666666 777 6999999999988886532110 01111111111 0 11226899985
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
...- ...+....++|+++|.++.....
T Consensus 266 ~~G~--------~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 266 MAGS--------VPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred CCCC--------hHHHHHHHHHHhcCCEEEEEccC
Confidence 3221 12466778899999998876543
No 333
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=93.98 E-value=0.13 Score=43.26 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=58.5
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEc---c---CCCCCCCCcee-
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---D---FFTWCPTELFD- 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d---~~~~~~~~~fD- 176 (231)
.++.+||-.|||. |..+..+++ .|.+ |++++.+++..+.+++.-.. .++.. + +........+|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAM-------QTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc-------eEecCcccCHHHHHHHhcCCCCCe
Confidence 3567999998865 566666666 7775 78999999988877543211 11111 1 11122233577
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+|+....- ...+....++|++||.+++..+..
T Consensus 232 ~v~d~~G~--------~~~~~~~~~~l~~~G~iv~~G~~~ 263 (347)
T PRK10309 232 LILETAGV--------PQTVELAIEIAGPRAQLALVGTLH 263 (347)
T ss_pred EEEECCCC--------HHHHHHHHHHhhcCCEEEEEccCC
Confidence 66632211 235677889999999998876543
No 334
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.94 E-value=1.3 Score=34.76 Aligned_cols=104 Identities=11% Similarity=-0.019 Sum_probs=62.0
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 173 (231)
.+++||-.|++.| ..+..+++.|.+|++++-+++......+..... .+++++.+|+.+... -+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4578999998643 223344458899999999887766554433222 257889999987220 12
Q ss_pred ceeEEEeCCccccc-ChHH--------------HHHHHHHHHhhcCCCcEEEEEEc
Q 026870 174 LFDLIFDYTFFCAI-EPEM--------------RAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 174 ~fD~I~~~~~~~~~-~~~~--------------~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.+|.++........ +... ...+++.+...++++|.+++..-
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46877765432111 0011 12335666667778887766554
No 335
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.91 E-value=1.4 Score=34.43 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=66.8
Q ss_pred CCCCcEEEecCCCch--HHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCC-CCceeEE
Q 026870 107 LPKGRALVPGCGTGY--DVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCP-TELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~--~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~fD~I 178 (231)
.+.+.++++.|+.|. .++.|+- -|.++++|-++++.+...++.+...+..+.++|+.++..+ ..+ -...|++
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence 344788998766442 3444432 5679999999999888888877766666667999888543 222 2468888
Q ss_pred EeCCcccccChHHHH-HHHHHHHhhcCCCcEEEEEEccCCCCCCCCCC
Q 026870 179 FDYTFFCAIEPEMRA-AWAQKIKDFLKPDGELITLMFPISDHVGGPPY 225 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~ 225 (231)
+...-. ++.. ++|+.+. +.|.|-+++.........+|..|
T Consensus 120 vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na~~r~~~~~~w 160 (218)
T PF07279_consen 120 VVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNAFSRSTNGFSW 160 (218)
T ss_pred EEeCCc-----hhHHHHHHHHhc--cCCCceEEEEeccccCCcCCccH
Confidence 832111 2222 4444322 45667766655444333344444
No 336
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.55 E-value=0.11 Score=43.27 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=50.4
Q ss_pred cEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEeC
Q 026870 111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDY 181 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~I~~~ 181 (231)
+++|+.||.|.+..-+...|. .+.++|+++.+++.-+.+.. ....+|+.+.. +. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEec
Confidence 789999999999999999886 78999999999999998873 67888888833 22 59999864
No 337
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.42 E-value=0.62 Score=35.05 Aligned_cols=99 Identities=20% Similarity=0.180 Sum_probs=56.5
Q ss_pred ecCCCchHHHHhcC--C-CCeEEEE--eCChHHHHHHH---HHhccCCCCCceE-EEEccCCCC---C--CCCceeEEEe
Q 026870 115 PGCGTGYDVVAMAS--P-ERYVVGL--EISDIAIKKAE---ELSSSLPNAKFVS-FLKADFFTW---C--PTELFDLIFD 180 (231)
Q Consensus 115 iGcG~G~~~~~l~~--~-~~~v~~i--D~s~~~i~~a~---~~~~~~~~~~~i~-~~~~d~~~~---~--~~~~fD~I~~ 180 (231)
+|=|.=.++..|++ . +.+++++ |..++..+... +++..... ..+. ....|+... . ....||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccccCCcCCEEEE
Confidence 44455566666666 2 3456555 44444443322 33333211 1222 234565552 2 3468999995
Q ss_pred CCcccccC-------------hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 181 YTFFCAIE-------------PEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 181 ~~~~~~~~-------------~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+ +.|.. ......+++.+.++|+++|.++|.....
T Consensus 82 N--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 82 N--FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred e--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4 44443 1344788899999999999998876654
No 338
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.38 E-value=0.54 Score=41.83 Aligned_cols=97 Identities=18% Similarity=0.312 Sum_probs=61.1
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----------------
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------------- 168 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------------- 168 (231)
.++.+|+-+|||. |..+..+++ .|..|+++|.+++.++.+++.- .+++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG--------a~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG--------AEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEeccccccccccccceeecCHHH
Confidence 3568999999997 666666666 7889999999999888777621 1222222111
Q ss_pred ------CCC--CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 169 ------WCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 169 ------~~~--~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
... -..+|+|++.....--+.+ .-+.++..+.+|||++++=+.
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEEee
Confidence 011 1369999876533221111 113566789999999866433
No 339
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.27 E-value=0.29 Score=40.20 Aligned_cols=60 Identities=23% Similarity=0.272 Sum_probs=51.6
Q ss_pred CcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC
Q 026870 94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL 153 (231)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~ 153 (231)
|...+.+.+.....++..|||.-+|+|..+......|.+++|+|++++.++.+.+++...
T Consensus 208 P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 208 PLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred hHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 345567777766777899999999999999999889999999999999999999988654
No 340
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.27 E-value=0.75 Score=38.17 Aligned_cols=100 Identities=12% Similarity=-0.048 Sum_probs=60.4
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHH--hccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026870 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEEL--SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~--~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~ 185 (231)
++|+-+|+|. |.++..|++.|..|+.++-+++.++..++. +.-.. ...............+.+.||+|+..-=-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~-~g~~~~~~~~~~~~~~~~~~D~viv~vK~- 80 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVE-QGQASLYAIPAETADAAEPIHRLLLACKA- 80 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEee-CCcceeeccCCCCcccccccCEEEEECCH-
Confidence 5799999996 567888888888999999987766666542 11000 00111111111111123479988842111
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
.+....++.+...+.++..++...-.
T Consensus 81 ----~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 81 ----YDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred ----HhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 23356788889999999987776543
No 341
>PRK11524 putative methyltransferase; Provisional
Probab=93.26 E-value=0.18 Score=41.40 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=39.5
Q ss_pred ceEEEEccCCC---CCCCCceeEEEeCCcccc------c----Ch----HHHHHHHHHHHhhcCCCcEEEEE
Q 026870 158 FVSFLKADFFT---WCPTELFDLIFDYTFFCA------I----EP----EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 158 ~i~~~~~d~~~---~~~~~~fD~I~~~~~~~~------~----~~----~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
+..++++|..+ ..++++||+|++...+.. . .. +-...++..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35788899888 346679999999755421 0 00 12257889999999999999875
No 342
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.24 E-value=0.25 Score=41.44 Aligned_cols=68 Identities=12% Similarity=-0.023 Sum_probs=53.2
Q ss_pred CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC----ceeEEEeCCc
Q 026870 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE----LFDLIFDYTF 183 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~fD~I~~~~~ 183 (231)
.+++|+.||.|.+.+-+...|. -+.++|+++.+++.-+.+... ..++..|+.+..... .+|+++....
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 5899999999999999988887 678899999999988888742 356677777633222 6899986543
No 343
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.12 E-value=1.7 Score=36.11 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=51.8
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
+.++++|-.|++.| ..+..|++.|.+|+.+..+.+..+.+.+.+.......++.++.+|+.+.. ..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 34578888888766 33455566899999999987766655554432211235889999998822 12
Q ss_pred CceeEEEeCCcc
Q 026870 173 ELFDLIFDYTFF 184 (231)
Q Consensus 173 ~~fD~I~~~~~~ 184 (231)
+..|+++.+...
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 468999987543
No 344
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.12 E-value=0.16 Score=42.92 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=34.4
Q ss_pred CcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHH
Q 026870 110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEE 148 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~ 148 (231)
..|+|+|.|.|+++.++.- .|..|++||-|....+.|+.
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 6999999999999999975 78899999999887777654
No 345
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=93.04 E-value=0.43 Score=36.42 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=56.5
Q ss_pred CcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCC--CCceEEEEccCCCC----------CCCCce
Q 026870 110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW----------CPTELF 175 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~----------~~~~~f 175 (231)
..|+.+|||--.....+... +..++-+|. |++++.-++.+..... ..+.+++.+|+.+. +.....
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 48999999988777777663 457777777 5555555554444311 12356799999971 123467
Q ss_pred eEEEeCCcccccChHHHHHHHHHH
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKI 199 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~ 199 (231)
-++++-.++.+++++....+++.+
T Consensus 159 tl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEESSGGGS-HHHHHHHHHHH
T ss_pred eEEEEcchhhcCCHHHHHHHHHHh
Confidence 788889999999988877777765
No 346
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.98 E-value=0.17 Score=35.97 Aligned_cols=91 Identities=21% Similarity=0.187 Sum_probs=48.7
Q ss_pred CCcEEEecCCCc-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCccc
Q 026870 109 KGRALVPGCGTG-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFC 185 (231)
Q Consensus 109 ~~~vLDiGcG~G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~I~~~~~~~ 185 (231)
..+|+|+|-|.= ..+..|.+.|..|+++|+.+. .+. ..+.++..|++++... ...|+|++....
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~---------~g~~~v~DDif~P~l~iY~~a~lIYSiRPP- 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP---------EGVNFVVDDIFNPNLEIYEGADLIYSIRPP- 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES---
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc---------cCcceeeecccCCCHHHhcCCcEEEEeCCC-
Confidence 359999999985 445666668899999999987 111 2367999999996432 379999974432
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
++.... +-++++. -|.-|++..++.+.
T Consensus 81 ---~El~~~-il~lA~~--v~adlii~pL~~e~ 107 (127)
T PF03686_consen 81 ---PELQPP-ILELAKK--VGADLIIRPLGGES 107 (127)
T ss_dssp ---TTSHHH-HHHHHHH--HT-EEEEE-BTTB-
T ss_pred ---hHHhHH-HHHHHHH--hCCCEEEECCCCCC
Confidence 222233 3333332 35667777776643
No 347
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.70 E-value=0.23 Score=41.44 Aligned_cols=63 Identities=19% Similarity=0.093 Sum_probs=47.8
Q ss_pred EEEecCCCchHHHHhcCCCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeC
Q 026870 112 ALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDY 181 (231)
Q Consensus 112 vLDiGcG~G~~~~~l~~~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~I~~~ 181 (231)
|+|+.||.|....-+...|.+ +.++|+++.+++.-+.+... .++.+|+.+... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999999999888885 56799999999988887642 234567766332 1257888864
No 348
>PLN02740 Alcohol dehydrogenase-like
Probab=92.55 E-value=0.42 Score=40.86 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=59.2
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-----CCC----CCCCCc
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFT----WCPTEL 174 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-----~~~----~~~~~~ 174 (231)
.++.+||-+|||. |..+..+++ .|. +|+++|.+++.++.+++.-. + .++... +.+ ... +.
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-----~--~~i~~~~~~~~~~~~v~~~~~-~g 268 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI-----T--DFINPKDSDKPVHERIREMTG-GG 268 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC-----c--EEEecccccchHHHHHHHHhC-CC
Confidence 4567999999875 666666776 777 69999999999888866321 1 122211 111 112 26
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026870 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP 215 (231)
Q Consensus 175 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~li~~~~~ 215 (231)
+|+|+....- ...+......+++| |.++++...
T Consensus 269 ~dvvid~~G~--------~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 269 VDYSFECAGN--------VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred CCEEEECCCC--------hHHHHHHHHhhhcCCCEEEEEccC
Confidence 9999853331 12456677788886 988776654
No 349
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.44 E-value=0.54 Score=35.86 Aligned_cols=97 Identities=19% Similarity=0.135 Sum_probs=60.0
Q ss_pred cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-------CC-C--------CCceEEEEccCCCCCCC
Q 026870 111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LP-N--------AKFVSFLKADFFTWCPT 172 (231)
Q Consensus 111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~~~ 172 (231)
+|--+|+|. | ..+..++..|.+|+.+|.+++.++.+.++... .+ . ..++. ...|+.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~-- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV-- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh--
Confidence 366788886 4 45555666899999999999999888775543 11 1 12343 233443332
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 173 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
..|+|+-.- .+.+ +.+.++++++.+.+.|+.+|...+-
T Consensus 78 -~adlViEai-~E~l--~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 78 -DADLVIEAI-PEDL--ELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp -TESEEEE-S--SSH--HHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred -hhheehhhc-cccH--HHHHHHHHHHHHHhCCCceEEecCC
Confidence 578887322 2323 6778899999999999998876553
No 350
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.22 E-value=0.56 Score=39.12 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=59.1
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc---CCCCC-CCCceeEEE
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWC-PTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~-~~~~fD~I~ 179 (231)
.++.+||..|||. |..+..+++ .|. ++++++.+++..+.+++... + .++..+ +.... ....+|+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~-----~--~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA-----D--ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC-----C--EEEcCCchhhhhhhccCCCccEEE
Confidence 3667888888876 667766776 777 79999999888876655321 1 112111 11111 123599998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
..... ...++...+.|+++|+++....
T Consensus 237 d~~g~--------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 237 EASGA--------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred ECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence 54321 1246778899999999887654
No 351
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=92.17 E-value=0.25 Score=41.22 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=59.4
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEe
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~I~~ 180 (231)
.++.+||..|+|. |..+..+++ .|.+++++..+++..+.+++.... .-+.....++.+ ......+|+++.
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~----~v~~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGAD----DTINVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCC----EEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence 3457899988764 677777777 788999998888888877543210 001111111111 223346899985
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
...- ...+..+.+.|+++|.++....
T Consensus 234 ~~g~--------~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 234 ATGN--------PASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred CCCC--------HHHHHHHHHHHhcCCEEEEEcC
Confidence 4211 1246778889999999876543
No 352
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.12 E-value=1.3 Score=36.47 Aligned_cols=98 Identities=15% Similarity=0.041 Sum_probs=55.3
Q ss_pred cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026870 111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~ 188 (231)
+|+-+|+|. | .++..|++.|.+|+.++.+++.++..++...... .........-..+......+|+|+..--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~d~vila~k----- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLE-DGEITVPVLAADDPAELGPQDLVILAVK----- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCccc-CCceeecccCCCChhHcCCCCEEEEecc-----
Confidence 688899986 3 4555566688899999998777766554321100 0111100000111111257898884322
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 189 PEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
......+++.+...+.++..++...-
T Consensus 76 ~~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 76 AYQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred cccHHHHHHHHhhhcCCCCEEEEecC
Confidence 22345677888888888777665443
No 353
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.10 E-value=0.36 Score=40.68 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=58.7
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee-
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD- 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD- 176 (231)
.++.+||-.|||. |..+..+++ .|.+++++|.+++.++.+++.-... -+..... ++.+ ......+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~----~i~~~~~~~~~~~~~~~~~t~~~g~d~ 240 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADL----TLNPKDKSAREVKKLIKAFAKARGLRS 240 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce----EecCccccHHHHHHHHHhhcccCCCCC
Confidence 4567999999976 677777776 7779999999999888886532110 0111111 1111 11122354
Q ss_pred ---EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 177 ---LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 177 ---~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+|+.... . ...+....++|++||++++..+..
T Consensus 241 ~~d~v~d~~g-----~---~~~~~~~~~~l~~~G~iv~~G~~~ 275 (349)
T TIGR03201 241 TGWKIFECSG-----S---KPGQESALSLLSHGGTLVVVGYTM 275 (349)
T ss_pred CcCEEEECCC-----C---hHHHHHHHHHHhcCCeEEEECcCC
Confidence 5552111 1 134566788999999998876543
No 354
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.09 E-value=0.95 Score=37.02 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=53.8
Q ss_pred cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026870 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~~~ 188 (231)
+|.-||+|. |.++..|.+.|.+|+++|.+++.++.+.+... +.....+. +. ....|+|+.. ++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~-------~~~~~~~~-~~--~~~aDlVila-----vp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL-------VDEASTDL-SL--LKDCDLVILA-----LP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-------cccccCCH-hH--hcCCCEEEEc-----CC
Confidence 567788886 56677777788899999999988887765310 11111111 11 1357888843 34
Q ss_pred hHHHHHHHHHHHhhcCCCcEE
Q 026870 189 PEMRAAWAQKIKDFLKPDGEL 209 (231)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~l 209 (231)
+....++++++...++++.++
T Consensus 67 ~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHHHHHhCCCCcEE
Confidence 455566778888888877544
No 355
>PRK08324 short chain dehydrogenase; Validated
Probab=91.90 E-value=2.1 Score=39.75 Aligned_cols=73 Identities=16% Similarity=0.059 Sum_probs=49.2
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CC
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~ 173 (231)
++++||-.|++.| ..+..+++.|.+|+.+|.++...+.+.+.+... .++.++.+|+.+.. . -+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4478888886443 233444558899999999988776665544322 35888999988721 1 13
Q ss_pred ceeEEEeCCc
Q 026870 174 LFDLIFDYTF 183 (231)
Q Consensus 174 ~fD~I~~~~~ 183 (231)
.+|+|+.+..
T Consensus 498 ~iDvvI~~AG 507 (681)
T PRK08324 498 GVDIVVSNAG 507 (681)
T ss_pred CCCEEEECCC
Confidence 6899987754
No 356
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.64 E-value=0.62 Score=40.55 Aligned_cols=91 Identities=15% Similarity=0.030 Sum_probs=56.5
Q ss_pred CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026870 106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~ 183 (231)
.+.+++|+-+|+|. |......++ .|.+|+.+|.++.....+... + ..+ .++.+.. ..+|+|+....
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~----G----~~v--~~l~eal--~~aDVVI~aTG 276 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD----G----FRV--MTMEEAA--ELGDIFVTATG 276 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc----C----CEe--cCHHHHH--hCCCEEEECCC
Confidence 34678999999986 555544444 788999999998755443321 1 111 1222222 35899986432
Q ss_pred ccccChHHHHHHHH-HHHhhcCCCcEEEEEEccC
Q 026870 184 FCAIEPEMRAAWAQ-KIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~-~~~~~L~pgG~li~~~~~~ 216 (231)
- ..++. .....+|+|++++...+..
T Consensus 277 ~--------~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 277 N--------KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred C--------HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 1 12343 6778899999887765543
No 357
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.59 E-value=3.6 Score=34.50 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=50.8
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
..+++||-.|++.| ..+..|++.|.+|+.++.+++.++...+.+...+ .++.++.+|+.+... -
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 34568888887654 2334455689999999999887776655544332 357889999988211 1
Q ss_pred CceeEEEeCCc
Q 026870 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~I~~~~~ 183 (231)
+.+|+++.+..
T Consensus 84 g~iD~lInnAg 94 (334)
T PRK07109 84 GPIDTWVNNAM 94 (334)
T ss_pred CCCCEEEECCC
Confidence 46899987654
No 358
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.57 E-value=0.72 Score=39.88 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=56.2
Q ss_pred CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026870 106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~ 183 (231)
...+++|+-+|+|. |......++ .|.+|+++|.++.....+... + ..+. ++.+.. ...|+|++...
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G----~~v~--~leeal--~~aDVVItaTG 259 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----G----FRVM--TMEEAA--KIGDIFITATG 259 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----C----CEeC--CHHHHH--hcCCEEEECCC
Confidence 35678999999997 666665555 788999999988654333321 1 1111 222222 34688876322
Q ss_pred ccccChHHHHHHHH-HHHhhcCCCcEEEEEEcc
Q 026870 184 FCAIEPEMRAAWAQ-KIKDFLKPDGELITLMFP 215 (231)
Q Consensus 184 ~~~~~~~~~~~~l~-~~~~~L~pgG~li~~~~~ 215 (231)
- ..++. .....+|+|++++.....
T Consensus 260 ~--------~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 N--------KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred C--------HHHHHHHHHhcCCCCcEEEEECCC
Confidence 1 22343 477889999988876554
No 359
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=91.54 E-value=0.35 Score=40.43 Aligned_cols=92 Identities=16% Similarity=0.240 Sum_probs=56.8
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCceeE
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD~ 177 (231)
++.+||..|+|. |..+..+++ .|. .+++++.+++..+.+++... ..++.. ++.+ ......+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~-------~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA-------TDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC-------cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 457888877653 666677776 674 78999888877777665321 112211 1111 223356999
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
++..... ...+....+.|+++|.++....
T Consensus 240 vld~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 268 (347)
T cd05278 240 VIEAVGF--------EETFEQAVKVVRPGGTIANVGV 268 (347)
T ss_pred EEEccCC--------HHHHHHHHHHhhcCCEEEEEcC
Confidence 9853221 1256778899999999876653
No 360
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.49 E-value=0.72 Score=37.24 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=45.0
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEe
Q 026870 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~I~~ 180 (231)
.+++...|+|+-.|.++..|.+++..|+++|-.+.+-..... ..++....|-+.+.| ....|-.+|
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~dt--------g~v~h~r~DGfk~~P~r~~idWmVC 276 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLMDT--------GQVTHLREDGFKFRPTRSNIDWMVC 276 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccchhhhhhhcc--------cceeeeeccCcccccCCCCCceEEe
Confidence 456899999999999999999999999999986654332221 234555555555433 334454444
No 361
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.46 E-value=0.41 Score=40.26 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=58.0
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~I~ 179 (231)
.++.+||-.|+|. |..+..+++ .|. .++++|.+++..+.+++.-. ..-+.....+..+ ......+|+++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA----TDIVDYKNGDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----ceEecCCCCCHHHHHHHHhCCCCCcEEE
Confidence 3457888888763 566666666 677 69999999988877765221 0001111111111 12234699998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
....- ...+..+.++|+++|.++....
T Consensus 241 d~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 241 IAGGG--------QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred ECCCC--------HHHHHHHHHHhhcCCEEEEecc
Confidence 53221 1346788899999999886554
No 362
>PRK07576 short chain dehydrogenase; Provisional
Probab=91.45 E-value=3.6 Score=33.01 Aligned_cols=74 Identities=15% Similarity=0.009 Sum_probs=47.0
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
++++++|-.|.+.| ..+..++..|.+|+.++.++..++...+.....+ .++.++.+|+.+.. ..
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45678888886443 2334455589999999998776655544333221 34678889988721 01
Q ss_pred CceeEEEeCC
Q 026870 173 ELFDLIFDYT 182 (231)
Q Consensus 173 ~~fD~I~~~~ 182 (231)
+.+|+++++.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 3579998754
No 363
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.38 E-value=0.71 Score=38.32 Aligned_cols=92 Identities=16% Similarity=0.097 Sum_probs=59.2
Q ss_pred CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCC---CCCCCcee
Q 026870 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT---WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~---~~~~~~fD 176 (231)
.++.+||-.|+ |.|..+..+++ .|.++++++.+++..+.+++.- . + .++.. +..+ ....+.+|
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lG-a----~--~vi~~~~~~~~~~~~~~~~~~gvd 209 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLG-F----D--VAFNYKTVKSLEETLKKASPDGYD 209 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC-C----C--EEEeccccccHHHHHHHhCCCCeE
Confidence 35578988884 45788888887 7889999999998888886522 1 1 11211 1111 11124699
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
+|+.... . ..+....++|+++|+++....
T Consensus 210 vv~d~~G-----~----~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 210 CYFDNVG-----G----EFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred EEEECCC-----H----HHHHHHHHHhCcCcEEEEecc
Confidence 9984321 1 135678899999999987653
No 364
>PRK08267 short chain dehydrogenase; Provisional
Probab=91.29 E-value=3.6 Score=32.76 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=47.7
Q ss_pred CcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C------CCc
Q 026870 110 GRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P------TEL 174 (231)
Q Consensus 110 ~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~------~~~ 174 (231)
+++|-.|++.| .++..+++.|.+|+.++.+++.++...+... ..++.++.+|+.+.. . .+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 36788887654 2344555689999999998887766655432 135889999998821 0 346
Q ss_pred eeEEEeCCc
Q 026870 175 FDLIFDYTF 183 (231)
Q Consensus 175 fD~I~~~~~ 183 (231)
+|+++.+..
T Consensus 78 id~vi~~ag 86 (260)
T PRK08267 78 LDVLFNNAG 86 (260)
T ss_pred CCEEEECCC
Confidence 799987654
No 365
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.28 E-value=1.7 Score=36.07 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=58.8
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-----CCCCCceeEE
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~fD~I 178 (231)
.++.+||..|+|. |..+..+++ .|.+ ++.++.+++..+.+++... . .++..+-.+ ......+|++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-----~--~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA-----T--ETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-----e--EEecCCCCCHHHHHHhcCCCCcEE
Confidence 3557888888753 666666666 6766 8999999988887754321 0 222221111 1123569999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+....- ...+....++|+++|.++.....
T Consensus 231 ~~~~~~--------~~~~~~~~~~l~~~G~~v~~g~~ 259 (334)
T cd08234 231 IEATGV--------PKTLEQAIEYARRGGTVLVFGVY 259 (334)
T ss_pred EECCCC--------hHHHHHHHHHHhcCCEEEEEecC
Confidence 854221 13467778899999998876654
No 366
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.17 E-value=3.2 Score=34.02 Aligned_cols=106 Identities=14% Similarity=0.096 Sum_probs=60.9
Q ss_pred CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChH-HHHHHHHHhccCCCCCceEEEEccCCCCC------C----
Q 026870 106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWC------P---- 171 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~-~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~---- 171 (231)
..+++++|-.|++.| .++..+++.|.+|+.++.++. ..+.........+ .++.++.+|+.+.. .
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 345578999987664 344555668999999987642 2333333332221 35788999988721 0
Q ss_pred -CCceeEEEeCCcccc-------cChH-----------HHHHHHHHHHhhcCCCcEEEEEE
Q 026870 172 -TELFDLIFDYTFFCA-------IEPE-----------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 172 -~~~fD~I~~~~~~~~-------~~~~-----------~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
-+..|+++.+..... .+.+ ....+++.+...++++|.+++..
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 135788886543221 1111 11345556666677777766544
No 367
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=91.08 E-value=0.49 Score=39.56 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=57.9
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEcc------CCCCCCCCceeE
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD------FFTWCPTELFDL 177 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d------~~~~~~~~~fD~ 177 (231)
.++.+||-.|+|. |..+..+++ .|.+ +++++.+++..+.+++.. . ..++... +........+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g-~------~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELG-A------DDTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-C------CEEecCccccHHHHHHHhCCCCCCE
Confidence 3557888888765 666666666 7776 999998888777765421 1 1111111 111222335999
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
++.... . ...+..+.++|+++|.++.....
T Consensus 231 vld~~g-----~---~~~~~~~~~~l~~~G~~v~~g~~ 260 (343)
T cd08236 231 VIEAAG-----S---PATIEQALALARPGGKVVLVGIP 260 (343)
T ss_pred EEECCC-----C---HHHHHHHHHHhhcCCEEEEEccc
Confidence 985421 1 12467788999999998776543
No 368
>PRK13699 putative methylase; Provisional
Probab=91.08 E-value=0.48 Score=37.61 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=37.1
Q ss_pred EEEEccCCC---CCCCCceeEEEeCCcccc---------cC----hHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 160 SFLKADFFT---WCPTELFDLIFDYTFFCA---------IE----PEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 160 ~~~~~d~~~---~~~~~~fD~I~~~~~~~~---------~~----~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
+++++|..+ ..+++++|+|+....+.- +. .+-...++.++.++|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 567788777 456788999998754420 00 123357889999999999988763
No 369
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.02 E-value=0.41 Score=40.22 Aligned_cols=97 Identities=23% Similarity=0.226 Sum_probs=57.7
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~I~ 179 (231)
.++.+||-.|+|. |..+..+++ .|. +|++++.+++..+.+++.-. ..-+.....++.+ ......+|+|+
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga----~~~i~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA----TIVLDPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC----CEEECCCccCHHHHHHHHhCCCCCCEEE
Confidence 3457888887653 555555555 777 89999999988888765321 0001111111111 12233599998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
..... ...+..+.+.|+++|.++.....
T Consensus 247 d~~g~--------~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 247 DCAGV--------QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred ECCCC--------HHHHHHHHHhccCCCEEEEEccC
Confidence 53321 12467788899999998876653
No 370
>PRK06139 short chain dehydrogenase; Provisional
Probab=91.01 E-value=3.9 Score=34.35 Aligned_cols=75 Identities=16% Similarity=0.072 Sum_probs=51.4
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
..+++||-.|++.| ..+..+++.|.+|+.++.+++.++...+.+...+ .++.++.+|+.+.. ..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 34578888888654 2344556689999999999888776665554332 35778889988721 01
Q ss_pred CceeEEEeCCc
Q 026870 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~I~~~~~ 183 (231)
+.+|+++.+..
T Consensus 83 g~iD~lVnnAG 93 (330)
T PRK06139 83 GRIDVWVNNVG 93 (330)
T ss_pred CCCCEEEECCC
Confidence 46899988754
No 371
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.94 E-value=0.67 Score=38.78 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=55.9
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC---CCCCCCCceeEEEe
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF---FTWCPTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~fD~I~~ 180 (231)
.++.+||-.|+|. |..+..+++ .|. ++++++-+++..+.+.+.-... -+.....+. ........+|+|+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADV----VINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcce----eeCcccccHHHHHHHcCCCCCCEEEE
Confidence 3556777777654 566666666 677 7888887777776666532110 011111111 11233457899985
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
...- ...+..+.++|+++|.++....
T Consensus 238 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 238 MSGN--------PKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred CCCC--------HHHHHHHHHHhccCCEEEEEcc
Confidence 3321 1235677889999999876543
No 372
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.91 E-value=0.62 Score=39.04 Aligned_cols=93 Identities=22% Similarity=0.204 Sum_probs=58.2
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEc---c-------CCCCCCCC
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---D-------FFTWCPTE 173 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d-------~~~~~~~~ 173 (231)
.++.+||-.|+|. |..+..+++ .|.+ ++.++.+++..+.+++. .. + .++.. + +.......
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~----~--~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA----T--HTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC----c--EEeccccccchhHHHHHHHHhCCC
Confidence 4557888877765 666677776 7776 89999888877777552 11 1 11111 1 11122334
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 174 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.+|+|+..... ...+....++|+++|.++....
T Consensus 234 ~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 234 GPDVVIECTGA--------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEEcc
Confidence 69999854221 1246778899999999876654
No 373
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.85 E-value=0.55 Score=42.88 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=62.0
Q ss_pred CcEEEecCCC-chHHH-HhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCC
Q 026870 110 GRALVPGCGT-GYDVV-AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~-G~~~~-~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~I~~~~ 182 (231)
.+|+-+|+|. |+... .|.+.+..++.+|.+++.++.+++. ....+.+|..+.. .-+..|.+++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv~~- 471 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAAGAEKAEAIVIT- 471 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhcCCccCCEEEEE-
Confidence 5787777775 54433 3344788999999999999988752 2568899998821 12367777732
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
.+++.....+-...+.+.|+..+++-..+++
T Consensus 472 ----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~ 502 (601)
T PRK03659 472 ----CNEPEDTMKIVELCQQHFPHLHILARARGRV 502 (601)
T ss_pred ----eCCHHHHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence 2223333344455666788888887666543
No 374
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.83 E-value=1.2 Score=36.50 Aligned_cols=87 Identities=18% Similarity=0.076 Sum_probs=53.6
Q ss_pred CcEEEecCCC--chHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026870 110 GRALVPGCGT--GYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~ 185 (231)
.+|+-+|.|. |.+++.+.+.|. .+++.|.+...++.+.+.- +.....+..........|+|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg--------v~d~~~~~~~~~~~~~aD~Viva---- 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG--------VIDELTVAGLAEAAAEADLVIVA---- 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC--------cccccccchhhhhcccCCEEEEe----
Confidence 5788889885 566777777777 4688888888777776432 11111111111122457888843
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEE
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGEL 209 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l 209 (231)
+|......+++++...|++|..|
T Consensus 72 -vPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 72 -VPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred -ccHHHHHHHHHHhcccCCCCCEE
Confidence 33345567788888778887654
No 375
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.80 E-value=1.3 Score=37.40 Aligned_cols=94 Identities=18% Similarity=0.097 Sum_probs=60.9
Q ss_pred CCCCcEEEecC-C-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCC---CCCCCcee
Q 026870 107 LPKGRALVPGC-G-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT---WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGc-G-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~---~~~~~~fD 176 (231)
.++.+||-.|+ | .|..+..+++ .|.+|++++.+++..+.+++.+.. + .++.. ++.+ ....+.+|
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa----~--~vi~~~~~~~~~~~i~~~~~~gvD 230 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF----D--EAFNYKEEPDLDAALKRYFPEGID 230 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC----C--EEEECCCcccHHHHHHHHCCCCcE
Confidence 45679999997 3 5788888887 788999999999888777643321 1 12211 1111 01123689
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+|+.... ...+....++|+++|.++++...
T Consensus 231 ~v~d~vG---------~~~~~~~~~~l~~~G~iv~~G~~ 260 (348)
T PLN03154 231 IYFDNVG---------GDMLDAALLNMKIHGRIAVCGMV 260 (348)
T ss_pred EEEECCC---------HHHHHHHHHHhccCCEEEEECcc
Confidence 9984322 12467788999999999876543
No 376
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.73 E-value=5.6 Score=31.29 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=48.1
Q ss_pred CCCCcEEEecCCCc--h-HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026870 107 LPKGRALVPGCGTG--Y-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G--~-~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
++++++|-.|++.| . .+..+++.|.+|+.++.++..++.+.+..... ..++.++.+|+.+... .
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 34578998887443 2 22334458889999999987666555444332 2357888999877210 1
Q ss_pred CceeEEEeCCc
Q 026870 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~I~~~~~ 183 (231)
+.+|.|+.+..
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 36899987643
No 377
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.71 E-value=5.2 Score=32.02 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=47.1
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CC
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~ 173 (231)
.++++|-.|++.| ..+..|++.|.+|+.++.+++..+...+.. ..++.++.+|+.+.. . -+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4568888887554 334455568999999999877555444332 135788999998831 0 13
Q ss_pred ceeEEEeCCc
Q 026870 174 LFDLIFDYTF 183 (231)
Q Consensus 174 ~fD~I~~~~~ 183 (231)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6798887644
No 378
>PRK05875 short chain dehydrogenase; Provisional
Probab=90.60 E-value=5.2 Score=32.20 Aligned_cols=77 Identities=17% Similarity=0.081 Sum_probs=48.0
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
.+++++|-.|++.| ..+..|++.|.+|++++.+++..+...+.........++.++.+|+.+... -
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 34578999986543 223344458899999998877655444433222112368889999987321 1
Q ss_pred CceeEEEeCCc
Q 026870 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~I~~~~~ 183 (231)
+..|+++.+..
T Consensus 85 ~~~d~li~~ag 95 (276)
T PRK05875 85 GRLHGVVHCAG 95 (276)
T ss_pred CCCCEEEECCC
Confidence 36799887643
No 379
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.56 E-value=2 Score=34.61 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=57.3
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~ 183 (231)
.++.+||-.|||. |..+..+++ .|.+ +++++.+++..+.+++.-.. +.+ .... ........+|+|+....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~----~~~--~~~~-~~~~~~~~~d~vl~~~~ 168 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA----DPV--AADT-ADEIGGRGADVVIEASG 168 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC----ccc--cccc-hhhhcCCCCCEEEEccC
Confidence 3457888888865 666666666 6777 99999999888876653201 111 1100 01112346899985322
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
. ...+....+.|+++|.++....
T Consensus 169 ~--------~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 S--------PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred C--------hHHHHHHHHHhcCCcEEEEEec
Confidence 1 1246777889999999876543
No 380
>PRK05872 short chain dehydrogenase; Provisional
Probab=90.51 E-value=5.5 Score=32.67 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=49.8
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
++++++|-.|++.| ..+..+++.|.+|+.++.+++.++...+.... ...+..+.+|+.+.. .-
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 45678898887665 33445556899999999998877665554432 124566678888721 01
Q ss_pred CceeEEEeCCcc
Q 026870 173 ELFDLIFDYTFF 184 (231)
Q Consensus 173 ~~fD~I~~~~~~ 184 (231)
+..|+++.+...
T Consensus 84 g~id~vI~nAG~ 95 (296)
T PRK05872 84 GGIDVVVANAGI 95 (296)
T ss_pred CCCCEEEECCCc
Confidence 468999987553
No 381
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.46 E-value=6.2 Score=31.58 Aligned_cols=104 Identities=21% Similarity=0.151 Sum_probs=60.6
Q ss_pred CCCCcEEEecCCCc-h----HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026870 107 LPKGRALVPGCGTG-Y----DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG~G-~----~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------- 170 (231)
..++.+|-.|+++| . .+..|++.|.+|+.++.++...+...+.....+ .+.++.+|+.+..
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHH
Confidence 45678999998752 3 344555689999999988654333333222211 2457788888721
Q ss_pred CCCceeEEEeCCcccc----------cChHHHH-----------HHHHHHHhhcCCCcEEEEEE
Q 026870 171 PTELFDLIFDYTFFCA----------IEPEMRA-----------AWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~~~fD~I~~~~~~~~----------~~~~~~~-----------~~l~~~~~~L~pgG~li~~~ 213 (231)
.-+..|+++.+..+.. .+.++.. .+.+.+...|+.+|.++...
T Consensus 85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 1146899988754321 1222221 23455666777778776544
No 382
>PLN02494 adenosylhomocysteinase
Probab=90.30 E-value=0.94 Score=39.85 Aligned_cols=98 Identities=16% Similarity=0.048 Sum_probs=60.0
Q ss_pred HHHHHHcC--CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026870 98 IVHLHQSG--ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 98 ~~~~~~~~--~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
+..+++.. .+.+++|+-+|+|. |......++ .|.+|+++|.++.....+.... ..+. ++.+.. .
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G--------~~vv--~leEal--~ 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG--------YQVL--TLEDVV--S 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC--------Ceec--cHHHHH--h
Confidence 44444442 34678999999996 655555554 7889999999986544443211 1111 222222 2
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 174 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
..|+|++...-.++ +.....+.||+||+|+-...
T Consensus 309 ~ADVVI~tTGt~~v-------I~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 309 EADIFVTTTGNKDI-------IMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred hCCEEEECCCCccc-------hHHHHHhcCCCCCEEEEcCC
Confidence 57999863332222 23667889999999987765
No 383
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.25 E-value=3.8 Score=32.23 Aligned_cols=73 Identities=15% Similarity=-0.027 Sum_probs=47.2
Q ss_pred CCCcEEEecCCCchHHHH----hcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026870 108 PKGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~----l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
+++++|-.|++ |..+.. +++.|.+++.++.+++.++...+.....+ .++.++.+|+.+... -
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45788877764 444444 44488899999988876665544443221 358899999987221 1
Q ss_pred CceeEEEeCCc
Q 026870 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~I~~~~~ 183 (231)
+..|+|+....
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 46899887644
No 384
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.16 E-value=5.7 Score=31.29 Aligned_cols=103 Identities=15% Similarity=0.027 Sum_probs=57.5
Q ss_pred CCCcEEEecCCCc--h-HHHHhcCCCCeEEEEeCCh-HHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026870 108 PKGRALVPGCGTG--Y-DVVAMASPERYVVGLEISD-IAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 108 ~~~~vLDiGcG~G--~-~~~~l~~~~~~v~~iD~s~-~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
.++++|-.|+..| . ++..|++.|.+|++++.+. ...+...+.....+ .++.++.+|+.+... -
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 4578998887543 2 3344455888999887654 23333332222221 357888999888321 1
Q ss_pred CceeEEEeCCccccc---Ch--------HHHHHHHHHHHhhcCCCcEEEEE
Q 026870 173 ELFDLIFDYTFFCAI---EP--------EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 173 ~~fD~I~~~~~~~~~---~~--------~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
+..|+++.+...... ++ .....+++.+.+.++.+|.+++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 357887765432110 00 12245667777777666766544
No 385
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.11 E-value=7.4 Score=30.98 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=60.5
Q ss_pred CCCCcEEEecCCC--c---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026870 107 LPKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------- 170 (231)
+.++++|-.|.++ | ..+..|++.|.+|+.++.+++..+...+.. ..++.++.+|+.+..
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV-----DEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc-----cCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 3457889888763 3 334555668999999887754333333221 124778899998721
Q ss_pred CCCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026870 171 PTELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~~~fD~I~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~li~~~ 213 (231)
.-+.+|+++.+..+.. .+.++. ..+.+.+...|+.+|.++...
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 1146899988754321 222222 234455666777788766544
No 386
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.00 E-value=0.58 Score=39.78 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=59.3
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEE--ccCCC-C--CCCCceeEE
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLK--ADFFT-W--CPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~--~d~~~-~--~~~~~fD~I 178 (231)
.++.+||-.|||. |..+..+++ .|. +|+++|.+++..+.+++.-... -+.... .++.+ . ...+.+|++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~----~i~~~~~~~~~~~~v~~~~~~g~d~v 259 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATD----CVNPNDYDKPIQEVIVEITDGGVDYS 259 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCe----EEcccccchhHHHHHHHHhCCCCCEE
Confidence 3467999999875 666677776 777 7999999999988886642110 011110 01111 0 011268998
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026870 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP 215 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~li~~~~~ 215 (231)
+....- ...+....++++++ |++++....
T Consensus 260 id~~G~--------~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 260 FECIGN--------VNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred EECCCC--------HHHHHHHHHHhhcCCCeEEEEecc
Confidence 843221 22456677888886 988877654
No 387
>PLN02827 Alcohol dehydrogenase-like
Probab=89.91 E-value=0.58 Score=40.02 Aligned_cols=93 Identities=19% Similarity=0.206 Sum_probs=57.9
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-----cCCC----CCCCCc
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT----WCPTEL 174 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-----d~~~----~~~~~~ 174 (231)
.++.+||-.|+|. |..+..+++ .|. .|+++|.+++..+.+++.-. + .++.. ++.+ .. .+.
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa-----~--~~i~~~~~~~~~~~~v~~~~-~~g 263 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV-----T--DFINPNDLSEPIQQVIKRMT-GGG 263 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-----c--EEEcccccchHHHHHHHHHh-CCC
Confidence 3567999998865 666666666 776 58999999988888865321 1 11211 1111 11 226
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026870 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP 215 (231)
Q Consensus 175 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~li~~~~~ 215 (231)
+|+|+....- ...+....+.+++| |++++....
T Consensus 264 ~d~vid~~G~--------~~~~~~~l~~l~~g~G~iv~~G~~ 297 (378)
T PLN02827 264 ADYSFECVGD--------TGIATTALQSCSDGWGLTVTLGVP 297 (378)
T ss_pred CCEEEECCCC--------hHHHHHHHHhhccCCCEEEEECCc
Confidence 8999853221 12356678888998 998876543
No 388
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=89.87 E-value=4.3 Score=36.26 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=64.8
Q ss_pred CCCcEEEecCCCchHHHHhcC---CC---CeEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCC-C--CCCCceeE
Q 026870 108 PKGRALVPGCGTGYDVVAMAS---PE---RYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFT-W--CPTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~---~~---~~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~-~--~~~~~fD~ 177 (231)
+...|.|..||+|.+.....+ .+ ..++|.+....+...+..++.-+... +......+|-.. + .....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 447999999999998875432 12 36999999999999998875433221 122333333333 1 12346888
Q ss_pred EEeCCccc--------------------c-cCh--HHHHHHHHHHHhhcCCCcEEEEE
Q 026870 178 IFDYTFFC--------------------A-IEP--EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 178 I~~~~~~~--------------------~-~~~--~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
|+++..+. | +++ +.-..++..+...|++||...++
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 77654221 1 111 12256778888899999975443
No 389
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.84 E-value=1.3 Score=37.03 Aligned_cols=96 Identities=15% Similarity=0.018 Sum_probs=59.8
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-------cCCC-----CCceEEEEccCCCCCCCCce
Q 026870 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSS-------SLPN-----AKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-------~~~~-----~~~i~~~~~d~~~~~~~~~f 175 (231)
.+|--||+|+ ..++..++..|..|+..|.+++.++.+...+. +.+. ..++++. .++.+.. ...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av--~~a 84 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV--ADA 84 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--cCC
Confidence 5788999995 45666677789999999999998876655322 1111 0122222 1221111 356
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
|+|+-. +.+.+ +.+..+++++.+.++|+.+|..
T Consensus 85 DlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIlaS 117 (321)
T PRK07066 85 DFIQES-APERE--ALKLELHERISRAAKPDAIIAS 117 (321)
T ss_pred CEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEEE
Confidence 888742 22222 5667888999999999985544
No 390
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.81 E-value=1.6 Score=36.17 Aligned_cols=93 Identities=19% Similarity=0.085 Sum_probs=57.9
Q ss_pred CCCCcEEEecCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCC
Q 026870 107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~I~~~~ 182 (231)
.++.+||-.||| .|..+..+++ .|.++++++.+++..+.+++.. . + .++...-.... ..+.+|+++...
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g-~----~--~~~~~~~~~~~~~~~~~~d~vi~~~ 233 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG-A----D--EVVDSGAELDEQAAAGGADVILVTV 233 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC-C----c--EEeccCCcchHHhccCCCCEEEECC
Confidence 345688888887 5666666666 6889999999998888775421 1 0 11111111100 124689888532
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.- ...+..+.+.|+++|.++....
T Consensus 234 ~~--------~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 234 VS--------GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred Cc--------HHHHHHHHHhcccCCEEEEECC
Confidence 21 1246777889999999887654
No 391
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.76 E-value=3.5 Score=36.06 Aligned_cols=96 Identities=16% Similarity=0.030 Sum_probs=57.7
Q ss_pred CCCCcEEEecCCCchHHHHhc----CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeE
Q 026870 107 LPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDL 177 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~ 177 (231)
....+|+-+|+|. ++..++ +.|..|+.+|.+++.++..++.. ..+.++.+|..+.. .-..+|.
T Consensus 229 ~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 229 KPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 3457899998854 444443 36889999999999888777653 13668889987721 1246788
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
|++... .+...-++..+.+.+.+. .+++.....
T Consensus 301 vi~~~~-----~~~~n~~~~~~~~~~~~~-~ii~~~~~~ 333 (453)
T PRK09496 301 FIALTN-----DDEANILSSLLAKRLGAK-KVIALVNRP 333 (453)
T ss_pred EEECCC-----CcHHHHHHHHHHHHhCCC-eEEEEECCc
Confidence 774221 112222334444555554 454444443
No 392
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=89.65 E-value=1.9 Score=36.61 Aligned_cols=92 Identities=26% Similarity=0.225 Sum_probs=54.4
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-c---CCCCCCCCceeEEEeC
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-D---FFTWCPTELFDLIFDY 181 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d---~~~~~~~~~fD~I~~~ 181 (231)
++.+||-.|+|. |..+..+++ .|.++++++.++.....+.+.+.. + .++.. + +.... +.+|+|+..
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga----~--~vi~~~~~~~~~~~~--~~~D~vid~ 254 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA----D--SFLVSTDPEKMKAAI--GTMDYIIDT 254 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC----c--EEEcCCCHHHHHhhc--CCCCEEEEC
Confidence 567888899875 667777776 788888888876543322222211 0 11111 1 11111 258888843
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
..- ...+....++|+++|.++.+...
T Consensus 255 ~g~--------~~~~~~~~~~l~~~G~iv~vG~~ 280 (360)
T PLN02586 255 VSA--------VHALGPLLGLLKVNGKLITLGLP 280 (360)
T ss_pred CCC--------HHHHHHHHHHhcCCcEEEEeCCC
Confidence 221 12467788899999999877643
No 393
>PRK10458 DNA cytosine methylase; Provisional
Probab=89.58 E-value=1.5 Score=38.76 Aligned_cols=56 Identities=13% Similarity=-0.088 Sum_probs=42.0
Q ss_pred CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026870 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
.+++|+.||.|.+..-+-..|. .|.++|+++.+.+.-+.++... +....+.+|+.+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~ 145 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRD 145 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhh
Confidence 5999999999999999988777 6788999999888887776321 123344555555
No 394
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.38 E-value=1.4 Score=38.65 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=71.0
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----C----CCCCceeEE
Q 026870 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----W----CPTELFDLI 178 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~----~~~~~fD~I 178 (231)
+.++|-+|-|.|.+...+.. +...+++++++|++++.|++++...... +..+.-.|-.+ . ..+..||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 46999999999999888866 4469999999999999999987543211 22222222222 1 123479998
Q ss_pred EeC---Cccccc--ChH--HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 179 FDY---TFFCAI--EPE--MRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 179 ~~~---~~~~~~--~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
+.- .-.+-+ ++. ....++...+..|.|.|.+++--..++
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 852 011222 122 336789999999999999877555544
No 395
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.31 E-value=1.1 Score=38.51 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=60.4
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD 176 (231)
.++.+||-.|+|. |..+..+++ .|.+ ++.+|.++..++.+++.-. + .+... +..+ ......+|
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga-----~--~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC-----E--TVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC-----e--EEecCCcccHHHHHHHHcCCCCCc
Confidence 3456777788865 666666666 6764 6667888888888876321 1 12111 1111 12234689
Q ss_pred EEEeCCcccc------cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 177 LIFDYTFFCA------IEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 177 ~I~~~~~~~~------~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+++....... .........++...+++++||.++++...
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 9985433210 00011124678888999999999887764
No 396
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.29 E-value=2.6 Score=38.72 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=63.1
Q ss_pred CCcEEEecCCC-chHHHH-hcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CC--CCceeEEEeC
Q 026870 109 KGRALVPGCGT-GYDVVA-MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP--TELFDLIFDY 181 (231)
Q Consensus 109 ~~~vLDiGcG~-G~~~~~-l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~--~~~fD~I~~~ 181 (231)
..+|+-+|||. |+.... |.+.+..++.+|.+++.++.+++. ...++.+|..+. .. -+..|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 36899999986 655433 444788999999999999988752 256899999883 22 2367877742
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
.+++.....+-...+.+.|+-.+++-..+.
T Consensus 472 -----~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~ 501 (621)
T PRK03562 472 -----IDDPQTSLQLVELVKEHFPHLQIIARARDV 501 (621)
T ss_pred -----eCCHHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 233333444455566667887776655443
No 397
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=89.27 E-value=0.92 Score=36.39 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=34.9
Q ss_pred HHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHH
Q 026870 98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE 148 (231)
Q Consensus 98 ~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~ 148 (231)
+..+.+.... +..+++|+.||+|..+..+...+..|+.-|+++..+...+.
T Consensus 9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKA 60 (260)
T ss_dssp HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHH
Confidence 3344443333 56899999999999999998888899999999988877663
No 398
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.21 E-value=0.96 Score=38.68 Aligned_cols=105 Identities=12% Similarity=0.157 Sum_probs=57.8
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCc
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~I~~~~~ 183 (231)
.++.+|+-+|+|. |..+...+. .|.+|+.+|.+++..+.+...... .+.....+..++. .-..+|+|++...
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~-----~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG-----RIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc-----eeEeccCCHHHHHHHHccCCEEEEccc
Confidence 3457899999984 666555555 788999999998876665544321 1111111111100 0136899996532
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 218 (231)
..--... .-+-++..+.++|+++++-+..++.+
T Consensus 240 ~~g~~~p--~lit~~~l~~mk~g~vIvDva~d~GG 272 (370)
T TIGR00518 240 IPGAKAP--KLVSNSLVAQMKPGAVIVDVAIDQGG 272 (370)
T ss_pred cCCCCCC--cCcCHHHHhcCCCCCEEEEEecCCCC
Confidence 1100000 00124455678999988766666543
No 399
>PRK07985 oxidoreductase; Provisional
Probab=89.21 E-value=8.1 Score=31.67 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=60.6
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC--hHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEIS--DIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s--~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------- 170 (231)
..++++|-.|++.| ..+..|++.|.+|+.++.+ .+..+...+.....+ .++.++.+|+.+..
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 45578999997654 3455556689999887654 233333333332222 35778899998721
Q ss_pred CCCceeEEEeCCccc-------ccChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026870 171 PTELFDLIFDYTFFC-------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~~~fD~I~~~~~~~-------~~~~~~~-----------~~~l~~~~~~L~pgG~li~~~ 213 (231)
.-+..|+++.+.... ..+.++. ..+++.+...|+.+|.+++..
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 114578888764321 1222221 245566666777788776543
No 400
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=89.20 E-value=1.1 Score=37.84 Aligned_cols=92 Identities=17% Similarity=0.172 Sum_probs=55.8
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc----------CCCCCCCCc
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD----------FFTWCPTEL 174 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d----------~~~~~~~~~ 174 (231)
++.+||-.|+|. |..+..+++ .|. +|++++.+++..+.+++.- . + .++..+ +.+......
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g----~-~--~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFG----A-D--ATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcC----C-C--eEEcCcccccHHHHHHHHHHhCCCC
Confidence 567888888653 555555555 788 8999999888777665421 1 1 111111 111122346
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 175 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
+|+|+....- ...+....++|+++|+++....
T Consensus 250 ~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 250 ADVVIEASGH--------PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CcEEEECCCC--------hHHHHHHHHHhccCCEEEEEcC
Confidence 9999853211 1245677889999999986653
No 401
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=89.18 E-value=2.5 Score=36.98 Aligned_cols=106 Identities=12% Similarity=-0.027 Sum_probs=64.7
Q ss_pred CCcEEEecCCCchHHHHh--cCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCC---CC-CCCceeEEE
Q 026870 109 KGRALVPGCGTGYDVVAM--ASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---WC-PTELFDLIF 179 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l--~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~---~~-~~~~fD~I~ 179 (231)
+..++|+|.|.|.-.-.+ .-++ ..++.||.+..+............ ...-.++.. -... +. ....||+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~-~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS-HIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh-hcCchhccccchhcccCCCCcccceeeEE
Confidence 468888888876544333 3333 379999999999988877664410 001112222 1222 22 234699999
Q ss_pred eCCcccccCh-HHHHHHHHH-HHhhcCCCcEEEEEEcc
Q 026870 180 DYTFFCAIEP-EMRAAWAQK-IKDFLKPDGELITLMFP 215 (231)
Q Consensus 180 ~~~~~~~~~~-~~~~~~l~~-~~~~L~pgG~li~~~~~ 215 (231)
|.+.++++.. ..+....+. +....++|+.++++.-.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 9999988753 344444444 44567888888877643
No 402
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.14 E-value=2.6 Score=34.70 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=57.7
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
..++.||-=|.|.| ..+..++++|.+++..|++++..+.-.+.....+ ++..+.+|+.+.. .-
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 45679999999988 4578888899999999999998877777665543 6889999999832 12
Q ss_pred CceeEEEeCCc
Q 026870 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~I~~~~~ 183 (231)
+..|+++.+..
T Consensus 113 G~V~ILVNNAG 123 (300)
T KOG1201|consen 113 GDVDILVNNAG 123 (300)
T ss_pred CCceEEEeccc
Confidence 57999998754
No 403
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=89.12 E-value=1.5 Score=36.69 Aligned_cols=106 Identities=16% Similarity=0.069 Sum_probs=59.9
Q ss_pred CCCCCcEEEecCCC-chH-HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026870 106 ALPKGRALVPGCGT-GYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~-~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~ 183 (231)
.+.+++|--||+|. |.- +..|...|.+|++.+......+.+... + .. ..++.+.. ...|+|+..
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~----G----~~--v~sl~Eaa--k~ADVV~ll-- 78 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKAD----G----FE--VMSVSEAV--RTAQVVQML-- 78 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHc----C----CE--ECCHHHHH--hcCCEEEEe--
Confidence 45568999999986 533 333444888998887554443333321 1 22 22333333 346888843
Q ss_pred ccccChHHHHHHH-HHHHhhcCCCcEEEEEE-ccCCCCCCCCCCCCC
Q 026870 184 FCAIEPEMRAAWA-QKIKDFLKPDGELITLM-FPISDHVGGPPYKVS 228 (231)
Q Consensus 184 ~~~~~~~~~~~~l-~~~~~~L~pgG~li~~~-~~~~~~~~~~~~~~~ 228 (231)
+|++....++ ..+...|+||..|++.+ |..-...--||=+|+
T Consensus 79 ---LPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~~i~pp~~vd 122 (335)
T PRK13403 79 ---LPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQINPPSYVD 122 (335)
T ss_pred ---CCChHHHHHHHHHHHhcCCCCCEEEECCCcceecCceeCCCCCe
Confidence 3322234454 56899999999876643 443333334555554
No 404
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.11 E-value=1.3 Score=36.97 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=57.4
Q ss_pred CcEEEecC--CCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC-C--CCCCceeEEE
Q 026870 110 GRALVPGC--GTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT-W--CPTELFDLIF 179 (231)
Q Consensus 110 ~~vLDiGc--G~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~-~--~~~~~fD~I~ 179 (231)
.+||-.|+ |.|..+..+++ .|. +|++++.+++..+.+++.+.. + .++.. ++.+ . .....+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa----~--~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF----D--AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC----c--EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 68988886 45778887877 787 799999998888877664321 1 12221 1111 0 1124699998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
....- . .+....++|+++|.++...
T Consensus 230 d~~g~-----~----~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 DNVGG-----E----ISDTVISQMNENSHIILCG 254 (345)
T ss_pred ECCCc-----H----HHHHHHHHhccCCEEEEEe
Confidence 53221 1 2466788999999988755
No 405
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.99 E-value=11 Score=30.42 Aligned_cols=74 Identities=20% Similarity=0.057 Sum_probs=46.2
Q ss_pred CCCcEEEecCCC--c---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026870 108 PKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (231)
Q Consensus 108 ~~~~vLDiGcG~--G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 171 (231)
.++.+|-.|++. | ..+..|++.|.+|+.++.+....+.+.+..... ....++.+|+.+.. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHhh
Confidence 457899999875 3 246666678999998887743333333322221 23567889998821 1
Q ss_pred CCceeEEEeCCcc
Q 026870 172 TELFDLIFDYTFF 184 (231)
Q Consensus 172 ~~~fD~I~~~~~~ 184 (231)
-+.+|+++.+..+
T Consensus 82 ~g~iD~linnAg~ 94 (262)
T PRK07984 82 WPKFDGFVHSIGF 94 (262)
T ss_pred cCCCCEEEECCcc
Confidence 1468999987643
No 406
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.95 E-value=2.6 Score=34.96 Aligned_cols=87 Identities=22% Similarity=0.133 Sum_probs=50.3
Q ss_pred CcEEEecCCC-c-hHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026870 110 GRALVPGCGT-G-YDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~-G-~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~ 185 (231)
.+|.-||+|. | .++..+.+.|. +|+++|.+++..+.+++. +. ......+..+.. ...|+|+..-
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~---~~~~~~~~~~~~--~~aDvViiav--- 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL---GDRVTTSAAEAV--KGADLVILCV--- 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC---CceecCCHHHHh--cCCCEEEECC---
Confidence 5789999986 3 44555555663 899999999887776542 11 001111211111 3478887433
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEE
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
++.....+++.+...+++++.++
T Consensus 75 --p~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 75 --PVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred --CHHHHHHHHHHHHhhCCCCCEEE
Confidence 22333455666666777776543
No 407
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.85 E-value=0.94 Score=40.95 Aligned_cols=92 Identities=16% Similarity=0.067 Sum_probs=57.5
Q ss_pred CcEEEecCCC-chHHH-HhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCC
Q 026870 110 GRALVPGCGT-GYDVV-AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~-G~~~~-~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~I~~~~ 182 (231)
.+++-+|||. |+... .|.+.|..++.+|.+++.++.+++. ....+.+|..+.. .-+.+|.+++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv~- 488 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLLT- 488 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEEE-
Confidence 5888888876 44433 3334788999999999998888752 2678999999831 12467866531
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.++++....+-.+.+...|+..++....
T Consensus 489 ----~~~~~~~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 489 ----IPNGYEAGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred ----cCChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 2222222223334455577777765543
No 408
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.68 E-value=0.99 Score=37.32 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=58.8
Q ss_pred CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC---CCCCCceeE
Q 026870 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---WCPTELFDL 177 (231)
Q Consensus 107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~---~~~~~~fD~ 177 (231)
.++.+||-.|+ |.|..+..+++ .|.++++++.+++..+.+++.- . + .++.. ++.+ ......+|+
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~G-a----~--~vi~~~~~~~~~~v~~~~~~gvd~ 214 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELG-F----D--AVFNYKTVSLEEALKEAAPDGIDC 214 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC-C----C--EEEeCCCccHHHHHHHHCCCCcEE
Confidence 35578888874 45777777777 7889999999998888887632 1 1 12221 1111 011246899
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
|+.... ...+....++|+++|.++...
T Consensus 215 vld~~g---------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 215 YFDNVG---------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EEECCC---------HHHHHHHHHhhccCCEEEEEc
Confidence 984322 124677889999999987664
No 409
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=88.68 E-value=1.1 Score=36.76 Aligned_cols=76 Identities=9% Similarity=-0.036 Sum_probs=63.6
Q ss_pred EEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026870 134 VGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 134 ~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
.-+...+...+.++++.. ++.+.++|+.+.. +.+..|.++...+-.++++.....++.++.+-+.+|..++
T Consensus 290 lP~yl~~~~YEsir~n~~------RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vi 363 (414)
T COG5379 290 LPAYLDEGVYESIRQNLR------RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVI 363 (414)
T ss_pred CChhhchhhHHHHHhhhh------heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEE
Confidence 446667777888887763 5889999999943 5678999999999999999999999999999999999999
Q ss_pred EEEcc
Q 026870 211 TLMFP 215 (231)
Q Consensus 211 ~~~~~ 215 (231)
+-+..
T Consensus 364 fRtaa 368 (414)
T COG5379 364 FRTAA 368 (414)
T ss_pred Eeccc
Confidence 86653
No 410
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.61 E-value=3.7 Score=33.55 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=57.3
Q ss_pred cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-------cCCC-C--------CceEEEEccCCCCCCC
Q 026870 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSS-------SLPN-A--------KFVSFLKADFFTWCPT 172 (231)
Q Consensus 111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-------~~~~-~--------~~i~~~~~d~~~~~~~ 172 (231)
+|--||+|. +..+..++..|.+|+++|.+++.++.++++.. +.+. . .++.+ ..|... .
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~---~ 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD---L 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---h
Confidence 678889985 56666677788899999999999876553221 1110 0 02221 122211 2
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 173 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
...|+|+..- ... .+....+++++.+.++|+.+|..
T Consensus 81 ~~aDlVi~av-~e~--~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 81 KDADLVIEAA-TEN--MDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred ccCCeeeecc-ccc--HHHHHHHHHHHHhhCCCCcEEEE
Confidence 4578887321 111 13446888999999999987744
No 411
>PRK07063 short chain dehydrogenase; Provisional
Probab=88.45 E-value=2.7 Score=33.49 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=52.0
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
+.++++|-.|++.| ..+..|++.|.+|+.++.++..++...+.........++.++.+|+.+... -
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 34578999998665 234555668999999999888777666555431112458889999987210 1
Q ss_pred CceeEEEeCCc
Q 026870 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~I~~~~~ 183 (231)
+.+|.++.+..
T Consensus 85 g~id~li~~ag 95 (260)
T PRK07063 85 GPLDVLVNNAG 95 (260)
T ss_pred CCCcEEEECCC
Confidence 46899887654
No 412
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.43 E-value=2 Score=35.20 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=56.9
Q ss_pred cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-CC--------CceEEEEccCCCCCCC
Q 026870 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCPT 172 (231)
Q Consensus 111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~~ 172 (231)
+|.-||+|. +..+..+++.|.+|+.+|.+++.++.+.++.... + .. .++++ ..+..+..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~-- 79 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAAV-- 79 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHhh--
Confidence 678889985 3455566678999999999999998876542110 0 00 01221 12222222
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 173 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
...|+|+..-. . +.+....++.++.+.++|+.++.+
T Consensus 80 ~~aD~Vi~avp-e--~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 80 ADADLVIEAVP-E--KLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred cCCCEEEEecc-C--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 35788884322 1 113456777888888888876644
No 413
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=88.38 E-value=1.2 Score=37.20 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=58.1
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD 176 (231)
.++.+||-.|+|. |..+..+++ .|. ++++++.+++..+.+++.-. + .++.. +..+ ......+|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~-----~--~~~~~~~~~~~~~~~~~~~~~~~d 234 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGA-----T--RAVNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC-----c--EEecCccccHHHHHHHhcCCCCCC
Confidence 3567777777764 566666666 777 68888888887777665321 1 11111 1111 22334689
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
+|+....- ...+....+.|+++|.++......
T Consensus 235 ~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~~~ 266 (341)
T PRK05396 235 VGLEMSGA--------PSAFRQMLDNMNHGGRIAMLGIPP 266 (341)
T ss_pred EEEECCCC--------HHHHHHHHHHHhcCCEEEEEecCC
Confidence 99853221 234677888999999988876543
No 414
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=88.34 E-value=3.2 Score=34.24 Aligned_cols=90 Identities=16% Similarity=0.091 Sum_probs=56.1
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
.++.+||-.|+|. |..+..+++ .|.++++++.+++..+.+++ ... . .+. +.........+|+++....-
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~---~-~~~----~~~~~~~~~~~d~vid~~g~ 224 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGV---E-TVL----PDEAESEGGGFDVVVEATGS 224 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC---c-EEe----CccccccCCCCCEEEECCCC
Confidence 3457888887653 445555555 78899999999998888876 211 1 111 11111233569999853211
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
...+....++|+++|.++...
T Consensus 225 --------~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 225 --------PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred --------hHHHHHHHHHhhcCCEEEEEc
Confidence 124567788899999988633
No 415
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.23 E-value=2.7 Score=34.52 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=57.0
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC--------CC---------CCceEEEEccCCCCC
Q 026870 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL--------PN---------AKFVSFLKADFFTWC 170 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~--------~~---------~~~i~~~~~d~~~~~ 170 (231)
.+|.-+|+|. +..+..++..|.+|+.+|.+++.++.+++..... .. ..++.+ ..|..+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence 4788899985 3445555668899999999999888876653210 00 012222 22222222
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026870 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 171 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
...|+|+.... .. .+....+++++...++++.+|.
T Consensus 83 --~~aDlVieavp-e~--~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 83 --KDADLVIEAVP-ED--PEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred --cCCCEEEEecc-CC--HHHHHHHHHHHHhhCCCCCEEE
Confidence 35688874322 11 2456777888888888777553
No 416
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.19 E-value=13 Score=30.86 Aligned_cols=119 Identities=10% Similarity=0.040 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCC----CeEEEEeCChHHHHHHHHHhccCC-----------------
Q 026870 96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE----RYVVGLEISDIAIKKAEELSSSLP----------------- 154 (231)
Q Consensus 96 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~~v~~iD~s~~~i~~a~~~~~~~~----------------- 154 (231)
..+..++++ ......|+.+|||.-.....|...+ ..++=+|+++....+... ....+
T Consensus 76 ~~v~~Fl~~-~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~i-k~~~~~s~~l~~~~~eD~~~~s 153 (335)
T KOG2918|consen 76 HAVRAFLEQ-TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISI-KRKPELSSILLGLHDEDVVDLS 153 (335)
T ss_pred HHHHHHHHh-cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhh-cccCchhhhhhccccccccccC
Confidence 334555554 2233699999999988888887744 367778887776666511 11110
Q ss_pred ----CCCceEEEEccCCCCC-----------CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 155 ----NAKFVSFLKADFFTWC-----------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 155 ----~~~~i~~~~~d~~~~~-----------~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
-..+...+.+|+.+.. ...-.-++++--++.+++++.-..+++.+.+..+..+.+......+
T Consensus 154 ~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~ 230 (335)
T KOG2918|consen 154 GTDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINP 230 (335)
T ss_pred cceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCC
Confidence 1125566667766511 0123445556677888999888899999999888877665544443
No 417
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=88.14 E-value=1.2 Score=37.73 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=58.1
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc--CCC----CCCCCceeE
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFT----WCPTELFDL 177 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d--~~~----~~~~~~fD~ 177 (231)
.++.+||-.|+|. |..+..+++ .|. +|+++|.+++..+.+++.-... -+.....+ +.+ ... ..+|+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~----~i~~~~~~~~~~~~~~~~~~-~g~d~ 257 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATD----FINPKDSDKPVSEVIREMTG-GGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCc----EeccccccchHHHHHHHHhC-CCCCE
Confidence 4567899888764 555566666 777 7999999999888886532110 01111100 011 112 46899
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI 216 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~li~~~~~~ 216 (231)
|+....- ...+....+.|+++ |.+++.....
T Consensus 258 vid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~~ 289 (365)
T cd08277 258 SFECTGN--------ADLMNEALESTKLGWGVSVVVGVPP 289 (365)
T ss_pred EEECCCC--------hHHHHHHHHhcccCCCEEEEEcCCC
Confidence 9843211 13467778889885 9888776543
No 418
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=88.03 E-value=0.93 Score=38.44 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=57.2
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc---CCC----CCCCCceeE
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFT----WCPTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~----~~~~~~fD~ 177 (231)
++.+||-.|+|. |..+..+++ .|. .++++|.++...+.+++.-. -.++..+ ..+ .. ...+|+
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-------~~~i~~~~~~~~~~v~~~~-~~~~d~ 257 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-------THVINPKEEDLVAAIREIT-GGGVDY 257 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-------cEEecCCCcCHHHHHHHHh-CCCCcE
Confidence 457888888764 666666666 777 69999999988877765321 1122211 111 12 346899
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
|+..... ...+....+.|+++|.++....
T Consensus 258 vld~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 258 ALDTTGV--------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred EEECCCC--------cHHHHHHHHHhccCCEEEEeCc
Confidence 9853221 1246778888999999876543
No 419
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.02 E-value=2.9 Score=34.56 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=55.3
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE-ccCCCCCCCCceeEEEeCCc
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~fD~I~~~~~ 183 (231)
..+.+|+-+|+|. |..+...++ .|.+|+.+|.++...+.+... + .++.. .++.+.. ..+|+|+....
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~----G----~~~~~~~~l~~~l--~~aDiVI~t~p 219 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEM----G----LSPFHLSELAEEV--GKIDIIFNTIP 219 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----C----CeeecHHHHHHHh--CCCCEEEECCC
Confidence 4578999999985 443333333 788999999998766555432 1 22221 1122222 36899996421
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 216 (231)
.. -+-+...+.++||++++=..+.+
T Consensus 220 -----~~---~i~~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 220 -----AL---VLTKEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred -----hh---hhhHHHHHcCCCCcEEEEEccCC
Confidence 11 12345667889999877666655
No 420
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.99 E-value=4.8 Score=33.59 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=59.3
Q ss_pred cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC------CCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026870 111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSL------PNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~------~~~~~i~~~~~d~~~~~~~~~fD~I~~~~ 182 (231)
+|.-+|||. | .++..|++.|..|+.++.+++.++..++..... ....++.+. .|..+.. .+.+|+|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~-~~~~Dliii-- 77 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL-SDNATCIIL-- 77 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH-hCCCCEEEE--
Confidence 577899987 3 456666778889999999888777666531110 011112221 1111111 135788772
Q ss_pred cccccChHHHHHHHHHHHh-hcCCCcEEEEEEcc
Q 026870 183 FFCAIEPEMRAAWAQKIKD-FLKPDGELITLMFP 215 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~-~L~pgG~li~~~~~ 215 (231)
.+++.....+++.+.. .++++..+++..-.
T Consensus 78 ---avks~~~~~~l~~l~~~~l~~~~~vv~~~nG 108 (326)
T PRK14620 78 ---AVPTQQLRTICQQLQDCHLKKNTPILICSKG 108 (326)
T ss_pred ---EeCHHHHHHHHHHHHHhcCCCCCEEEEEEcC
Confidence 2455667788888887 88888877665433
No 421
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.97 E-value=9.5 Score=33.30 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=56.1
Q ss_pred cEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---C--CCCceeEEEeC
Q 026870 111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C--PTELFDLIFDY 181 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~--~~~~fD~I~~~ 181 (231)
+|+-+|| |..+..+++ .|..|+.+|.+++.++.+++.. .+.++.+|..+. . .-..+|.|++.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 5677777 455554443 7889999999999887776522 367888888772 1 12468877743
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
. +.+.....+....+.+.|.-.+++...+
T Consensus 73 ~-----~~~~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 73 T-----DSDETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred c-----CChHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 2 1223334455556666566556555443
No 422
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.94 E-value=11 Score=30.23 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=59.1
Q ss_pred CCCCcEEEecCCC-chH----HHHhcCCCCeEEEEeCCh---HHHHHHHHHhccCCCCCceEEEEccCCCCC--------
Q 026870 107 LPKGRALVPGCGT-GYD----VVAMASPERYVVGLEISD---IAIKKAEELSSSLPNAKFVSFLKADFFTWC-------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~----~~~l~~~~~~v~~iD~s~---~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------- 170 (231)
..++.+|-.|+++ +.. +..|++.|.+|+.++.+. +.++...+... ..++.++.+|+.+..
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~ 80 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE----GQESLLLPCDVTSDEEITACFET 80 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC----CCceEEEecCCCCHHHHHHHHHH
Confidence 3467899999762 333 445555899998886543 33333333221 135778899998821
Q ss_pred ---CCCceeEEEeCCcccc----------cChHHHH-----------HHHHHHHhhcCCCcEEEEEE
Q 026870 171 ---PTELFDLIFDYTFFCA----------IEPEMRA-----------AWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ---~~~~fD~I~~~~~~~~----------~~~~~~~-----------~~l~~~~~~L~pgG~li~~~ 213 (231)
.-+.+|+++.+..+.. .+.+... .+.+.+...|+++|.++...
T Consensus 81 ~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 81 IKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred HHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 1256899887643221 1222111 23455667777788776554
No 423
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=87.83 E-value=2.8 Score=33.31 Aligned_cols=76 Identities=17% Similarity=0.056 Sum_probs=50.0
Q ss_pred CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026870 106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 171 (231)
.+.++++|-.|++.| .++..+++.|.+|+.++.+++.++...+.....+ .++.++.+|+.+.. .
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 456788998887554 2334455589999999999876665554443322 35788999988721 0
Q ss_pred CCceeEEEeCCc
Q 026870 172 TELFDLIFDYTF 183 (231)
Q Consensus 172 ~~~fD~I~~~~~ 183 (231)
-+++|.++.+..
T Consensus 86 ~~~id~vi~~ag 97 (256)
T PRK06124 86 HGRLDILVNNVG 97 (256)
T ss_pred cCCCCEEEECCC
Confidence 135788887644
No 424
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.80 E-value=1.7 Score=36.04 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=63.8
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCcc
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~I~~~~~~ 184 (231)
++.+|.-+|.|. |..+..++- .|..|+.+|+|..-+......+. .+++...-+..+.. .-...|+++..-.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLI 241 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLI 241 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEe
Confidence 346888899986 777777776 78899999999888777766553 24666655544421 11368998854222
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEE
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
.-- ....-..+++...||||++++
T Consensus 242 pga--kaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 242 PGA--KAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred cCC--CCceehhHHHHHhcCCCcEEE
Confidence 211 111234577889999999876
No 425
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=87.78 E-value=1.1 Score=37.56 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=56.5
Q ss_pred CCCCcEEEecCC-CchHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026870 107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~I~ 179 (231)
.++.+||-.|+| .|..+..+++ .|.+ |++++-+++..+.+++.-.. .-+.....++.+ ......+|+|+
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~----~~v~~~~~~~~~~l~~~~~~~~~d~vl 235 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGAT----YVVNPFKEDVVKEVADLTDGEGVDVFL 235 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc----EEEcccccCHHHHHHHhcCCCCCCEEE
Confidence 355677777765 3556666666 7775 88898888777776653210 001111112111 22334699998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
....- ...+..+.+.|+++|.++.....
T Consensus 236 d~~g~--------~~~~~~~~~~l~~~g~~v~~g~~ 263 (340)
T TIGR00692 236 EMSGA--------PKALEQGLQAVTPGGRVSLLGLP 263 (340)
T ss_pred ECCCC--------HHHHHHHHHhhcCCCEEEEEccC
Confidence 54211 12467788899999998776544
No 426
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.64 E-value=3.1 Score=34.22 Aligned_cols=96 Identities=21% Similarity=0.064 Sum_probs=52.5
Q ss_pred cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-CCCCCceEEEEccCCC-CCC-CCceeEEEeCCccc
Q 026870 111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSS-LPNAKFVSFLKADFFT-WCP-TELFDLIFDYTFFC 185 (231)
Q Consensus 111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~-~~~-~~~fD~I~~~~~~~ 185 (231)
+|+-+|+|. | .++..|++.|..|+.++. ++.++..++.-.. ........+ ...... ... ...+|+|+..--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vilavk-- 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTGPFDLVILAVK-- 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccCCCCEEEEEec--
Confidence 688899987 3 355666678889999998 6666655542100 000001110 111111 111 146888874322
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
......+++.+...+.++..++...
T Consensus 78 ---~~~~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 78 ---AYQLDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred ---ccCHHHHHHHHHhhcCCCCEEEEee
Confidence 2234567788888888887666543
No 427
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.63 E-value=1.4 Score=32.32 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=24.0
Q ss_pred EecCCCc--hHHHHhc----CCCCeEEEEeCChHHHHHHHHH
Q 026870 114 VPGCGTG--YDVVAMA----SPERYVVGLEISDIAIKKAEEL 149 (231)
Q Consensus 114 DiGcG~G--~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~ 149 (231)
|+|++.| .....++ .++.+|+++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 2567899999999999998888
No 428
>PRK06500 short chain dehydrogenase; Provisional
Probab=87.61 E-value=10 Score=29.83 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=45.8
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 173 (231)
+++++|-.|++.| ..+..+++.|.+|++++.+++.++...+... .++.++.+|+.+... .+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3567888887654 2344455688999999988776655444331 347788888876211 13
Q ss_pred ceeEEEeCCc
Q 026870 174 LFDLIFDYTF 183 (231)
Q Consensus 174 ~fD~I~~~~~ 183 (231)
.+|+++.+..
T Consensus 80 ~id~vi~~ag 89 (249)
T PRK06500 80 RLDAVFINAG 89 (249)
T ss_pred CCCEEEECCC
Confidence 6898887644
No 429
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=87.58 E-value=2.2 Score=32.72 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=55.5
Q ss_pred CCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--C--CceeEEEeCCcccccC
Q 026870 117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--T--ELFDLIFDYTFFCAIE 188 (231)
Q Consensus 117 cG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~--~~fD~I~~~~~~~~~~ 188 (231)
|.+|.....+++ +|+.|+++=-++.-+... ..+.+.+.|++++.. . ..||+|++..-...-+
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~ 76 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASD 76 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccChhhhHhhhcCCceEEEeccCCCCC
Confidence 456666555544 999999998887644321 247789999999543 2 3799999865544322
Q ss_pred -hHHHHHHHHHHHhhcCCCc--EEEEE
Q 026870 189 -PEMRAAWAQKIKDFLKPDG--ELITL 212 (231)
Q Consensus 189 -~~~~~~~l~~~~~~L~pgG--~li~~ 212 (231)
.+...+.++.+...|+.-| +|+++
T Consensus 77 ~~~~~~k~~~~li~~l~~agv~RllVV 103 (211)
T COG2910 77 NDELHSKSIEALIEALKGAGVPRLLVV 103 (211)
T ss_pred hhHHHHHHHHHHHHHHhhcCCeeEEEE
Confidence 2334555777777777744 34443
No 430
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.57 E-value=1.7 Score=31.71 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=55.3
Q ss_pred EEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCC-CCceEEEEcc-CCCC-CCCCceeEEEeCCcccc
Q 026870 112 ALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKAD-FFTW-CPTELFDLIFDYTFFCA 186 (231)
Q Consensus 112 vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~-~~~i~~~~~d-~~~~-~~~~~fD~I~~~~~~~~ 186 (231)
|+-+|+|. | .++..|.+.|..|+.+.-.+ .++..++.--.... ..+..+.... .... .....||+|+..-=-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-- 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-- 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG--
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc--
Confidence 56678876 3 44555556889999999988 66654443211100 0011111111 1111 134579999853211
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 187 IEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
.+....++.+...+.+++.+++..-.
T Consensus 78 ---~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 78 ---YQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp ---GGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred ---cchHHHHHHHhhccCCCcEEEEEeCC
Confidence 23356889999999999887765543
No 431
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.39 E-value=10 Score=31.67 Aligned_cols=80 Identities=16% Similarity=0.088 Sum_probs=57.9
Q ss_pred CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026870 106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 171 (231)
..++..++--|+-+| ..+..|+.+|.+|+-.--+.+..+.+.+.........++.++++|+.++. .
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 344568888888776 34667777999999999998777777776665434457999999999832 2
Q ss_pred CCceeEEEeCCccc
Q 026870 172 TELFDLIFDYTFFC 185 (231)
Q Consensus 172 ~~~fD~I~~~~~~~ 185 (231)
....|+.+.+....
T Consensus 112 ~~~ldvLInNAGV~ 125 (314)
T KOG1208|consen 112 EGPLDVLINNAGVM 125 (314)
T ss_pred CCCccEEEeCcccc
Confidence 35789988875433
No 432
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=87.37 E-value=1.4 Score=38.79 Aligned_cols=90 Identities=16% Similarity=0.001 Sum_probs=55.3
Q ss_pred CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026870 106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~ 183 (231)
.+.+++|+-+|+|. |......++ .|.+|+.+|.++.....+... + ..+ .++.+.. ...|+|++...
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~----G----~~~--~~leell--~~ADIVI~atG 318 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME----G----YQV--VTLEDVV--ETADIFVTATG 318 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc----C----cee--ccHHHHH--hcCCEEEECCC
Confidence 45678999999997 544444444 788999999887654333321 1 121 1222322 35799986532
Q ss_pred ccccChHHHHHHH-HHHHhhcCCCcEEEEEEcc
Q 026870 184 FCAIEPEMRAAWA-QKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 184 ~~~~~~~~~~~~l-~~~~~~L~pgG~li~~~~~ 215 (231)
-.+ ++ ......||||++|+-+...
T Consensus 319 t~~--------iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 319 NKD--------IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ccc--------ccCHHHHhccCCCcEEEEcCCC
Confidence 111 23 3677889999998765544
No 433
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.22 E-value=14 Score=29.94 Aligned_cols=75 Identities=16% Similarity=0.065 Sum_probs=46.7
Q ss_pred CCCCcEEEecCCC--c---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026870 107 LPKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------- 170 (231)
..++.+|-.|++. | ..+..|++.|.+|+.++.++...+...+.....+ ...++.+|+.+..
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHH
Confidence 3457899999875 4 4456666799999998877544333333222221 1246788988721
Q ss_pred CCCceeEEEeCCcc
Q 026870 171 PTELFDLIFDYTFF 184 (231)
Q Consensus 171 ~~~~fD~I~~~~~~ 184 (231)
.-+..|+++.+...
T Consensus 82 ~~g~iD~lVnnAG~ 95 (271)
T PRK06505 82 KWGKLDFVVHAIGF 95 (271)
T ss_pred HhCCCCEEEECCcc
Confidence 12578999887543
No 434
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.22 E-value=2.8 Score=36.06 Aligned_cols=69 Identities=25% Similarity=0.157 Sum_probs=48.7
Q ss_pred CcEEEecCCC-chHHHHh-cCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEEeCC
Q 026870 110 GRALVPGCGT-GYDVVAM-ASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~-G~~~~~l-~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~I~~~~ 182 (231)
++||-||||. |+.+... ++.+ .+|+..|-+.+..+.+...... +++.++.|+.+... -..+|+|++..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 5899999965 5444333 4566 6999999999888887765432 58899999988421 13469998654
Q ss_pred c
Q 026870 183 F 183 (231)
Q Consensus 183 ~ 183 (231)
.
T Consensus 77 p 77 (389)
T COG1748 77 P 77 (389)
T ss_pred C
Confidence 3
No 435
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.17 E-value=13 Score=30.06 Aligned_cols=97 Identities=13% Similarity=0.030 Sum_probs=55.9
Q ss_pred cEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----------CCCceeE
Q 026870 111 RALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------PTELFDL 177 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~fD~ 177 (231)
.+|--|+ |..+..+++ .|.+|+.++.++..++...+.....+ .++.++.+|+.+.. ..+.+|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4555564 345544443 68899999998776665544443222 35788899988721 1146899
Q ss_pred EEeCCcccccChH----------HHHHHHHHHHhhcCCCcEEEE
Q 026870 178 IFDYTFFCAIEPE----------MRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 178 I~~~~~~~~~~~~----------~~~~~l~~~~~~L~pgG~li~ 211 (231)
++.+........+ ....+++.+...++++|.+++
T Consensus 80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 8877654321111 112345556666666665443
No 436
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=87.10 E-value=1.3 Score=36.85 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=55.0
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc----CCCCCCCCceeEEEe
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD----FFTWCPTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d----~~~~~~~~~fD~I~~ 180 (231)
++.+||-.|+|. |..+..+++ .| .++++++-+++..+.+++.- . +.+--...+ +........+|+|+.
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g----~-~~~~~~~~~~~~~i~~~~~~~~~dvvld 241 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLG----A-DHVLNASDDVVEEVRELTGGRGADAVID 241 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhC----C-cEEEcCCccHHHHHHHHhCCCCCCEEEE
Confidence 457888888654 444444555 56 68999998888777765421 1 111001111 111223346999985
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
...- ...+....+.|+++|.++....
T Consensus 242 ~~g~--------~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 242 FVGS--------DETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred cCCC--------HHHHHHHHHHhhcCCEEEEEcC
Confidence 3221 1346778889999999887654
No 437
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=87.07 E-value=1.2 Score=37.89 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=58.5
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-c----CCC---CCCCCce
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-D----FFT---WCPTELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d----~~~---~~~~~~f 175 (231)
.++.+||-.|+|. |..+..+++ .|. +|+++|.+++..+.+++.-. + .++.. + +.+ ....+.+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa-----~--~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGA-----T--DCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-----C--EEEcccccchHHHHHHHHHhCCCC
Confidence 3567899888764 566666666 777 79999999998888865321 1 11211 1 111 0112368
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP 215 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~li~~~~~ 215 (231)
|+|+.... . ...+....+.|+++ |.++.....
T Consensus 258 d~vid~~g--~------~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 258 DYTFECIG--N------VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred cEEEECCC--C------hHHHHHHHHhhccCCCeEEEEccC
Confidence 99985321 1 13466778889887 988877654
No 438
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.05 E-value=5 Score=32.94 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=57.3
Q ss_pred CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC----------CC---------CCceEEEEccCCC
Q 026870 110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSL----------PN---------AKFVSFLKADFFT 168 (231)
Q Consensus 110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~----------~~---------~~~i~~~~~d~~~ 168 (231)
.+|.-+|+|. | ..+..++..|.+|+.+|.+++.++.+++..... +. ..++.+. .|. +
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY-E 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-H
Confidence 4788899985 3 455666678899999999999998765533211 00 0111111 121 1
Q ss_pred CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 169 ~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
. -...|+|+..-. .. .+....+++++...++|+.+++.
T Consensus 82 ~--~~~aDlVieav~-e~--~~~k~~~~~~l~~~~~~~~il~S 119 (291)
T PRK06035 82 S--LSDADFIVEAVP-EK--LDLKRKVFAELERNVSPETIIAS 119 (291)
T ss_pred H--hCCCCEEEEcCc-Cc--HHHHHHHHHHHHhhCCCCeEEEE
Confidence 1 134688874321 11 13467788888888888886653
No 439
>PRK12744 short chain dehydrogenase; Provisional
Probab=86.93 E-value=14 Score=29.36 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=56.7
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC----hHHHHHHHHHhccCCCCCceEEEEccCCCCC----------
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEIS----DIAIKKAEELSSSLPNAKFVSFLKADFFTWC---------- 170 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s----~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---------- 170 (231)
.++++|-.|++.| .++..|++.|.+++.++.+ .+..+...+..... ..++.++.+|+.+..
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAA--GAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHh--CCcEEEEecCcCCHHHHHHHHHHHH
Confidence 4568998887655 2334444578887777543 22232222222221 135888999998721
Q ss_pred -CCCceeEEEeCCccc------ccChHHH-----------HHHHHHHHhhcCCCcEEEE
Q 026870 171 -PTELFDLIFDYTFFC------AIEPEMR-----------AAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 171 -~~~~fD~I~~~~~~~------~~~~~~~-----------~~~l~~~~~~L~pgG~li~ 211 (231)
..+..|+++.+.... ..+.+.. ..+++.+...++++|.+++
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 114689998775432 2222221 2345666677777776654
No 440
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.91 E-value=4.2 Score=34.38 Aligned_cols=95 Identities=22% Similarity=0.131 Sum_probs=54.8
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCcc
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~I~~~~~~ 184 (231)
++.+||-.|+|. |..+..+++ .|.+++.++.+++....+.+.+.. + ..+...+..... ....+|+++....-
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga----~-~~i~~~~~~~~~~~~~~~D~vid~~g~ 254 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA----D-DYLVSSDAAEMQEAADSLDYIIDTVPV 254 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC----c-EEecCCChHHHHHhcCCCcEEEECCCc
Confidence 567888887764 666666776 777888888887765555443321 1 111111100100 01258888843211
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
...+..+.++|+++|+++.....
T Consensus 255 --------~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 255 --------FHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred --------hHHHHHHHHHhccCCEEEEECCC
Confidence 12456678899999998876543
No 441
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=86.77 E-value=4 Score=33.75 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=54.9
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~ 184 (231)
.++.+||-.|||. |..+..+++ .|.+++.++.+++..+.+++ ... + .++..+ .. +...+|+++.....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g~----~--~~~~~~--~~-~~~~vD~vi~~~~~ 235 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LGA----D--WAGDSD--DL-PPEPLDAAIIFAPV 235 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hCC----c--EEeccC--cc-CCCcccEEEEcCCc
Confidence 3456788787764 444444555 78899999998887777744 211 0 111111 11 23468888743111
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
...+....+.|+++|.++....
T Consensus 236 --------~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 236 --------GALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred --------HHHHHHHHHHhhcCCEEEEEcC
Confidence 1357788999999999887654
No 442
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.56 E-value=3.6 Score=34.35 Aligned_cols=92 Identities=16% Similarity=0.127 Sum_probs=60.6
Q ss_pred CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCC----CCCCCce
Q 026870 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT----WCPTELF 175 (231)
Q Consensus 107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~----~~~~~~f 175 (231)
.++.+||-.|+ |.|..+..+++ .|.++++++.+++..+.+++.+.. + .++.. +..+ .. ...+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa----~--~vi~~~~~~~~~~~i~~~~-~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF----D--DAFNYKEEPDLDAALKRYF-PNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC----c--eeEEcCCcccHHHHHHHhC-CCCc
Confidence 45679999886 45777777777 788999999999888888763321 1 12221 2111 11 2468
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
|+|+.... ...+....++|+++|.++....
T Consensus 223 d~v~d~~g---------~~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 223 DIYFDNVG---------GKMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred EEEEECCC---------HHHHHHHHHHhccCcEEEEecc
Confidence 99984321 1246778899999999987654
No 443
>PRK06128 oxidoreductase; Provisional
Probab=86.55 E-value=9 Score=31.43 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=59.4
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChH--HHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDI--AIKKAEELSSSLPNAKFVSFLKADFFTWCP---------- 171 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~--~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 171 (231)
+.++++|-.|++.| .++..|++.|.+|+.+..+.. ..+...+.....+ .++.++.+|+.+...
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 44578999997554 234445558888887765432 2222222222221 357788999987211
Q ss_pred -CCceeEEEeCCcccc-------cChHHH-----------HHHHHHHHhhcCCCcEEEEE
Q 026870 172 -TELFDLIFDYTFFCA-------IEPEMR-----------AAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 172 -~~~fD~I~~~~~~~~-------~~~~~~-----------~~~l~~~~~~L~pgG~li~~ 212 (231)
-+..|+++.+..... ++.+.. ..+++.+...|+++|.++..
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 136899987754321 122211 24556666777888876654
No 444
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.52 E-value=3.8 Score=34.08 Aligned_cols=97 Identities=18% Similarity=0.070 Sum_probs=52.4
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026870 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~-~~~~~~fD~I~~~~~~~ 185 (231)
++|+-+|+|. |.++..|++.|..|+.+..++. +..+++.... ....+..+....... ......+|+|+..--.+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~ 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence 6899999996 5667777778888888887652 2222221000 000111111111111 11224789988432211
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 186 AIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
+...+++.+...+++++.++...
T Consensus 84 -----~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 84 -----ANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred -----ChHhHHHHHhhhcCCCCEEEEec
Confidence 12356777788888888776554
No 445
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=86.50 E-value=15 Score=29.33 Aligned_cols=111 Identities=20% Similarity=0.145 Sum_probs=72.9
Q ss_pred CCCCCcEEEecCCCch-----HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------C----
Q 026870 106 ALPKGRALVPGCGTGY-----DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------C---- 170 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~-----~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~---- 170 (231)
.+.++++|-.|-..-+ .+..+.+.|+++...=..+..-+..++..+..+ .-.++++|+.+. +
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~---s~~v~~cDV~~d~~i~~~f~~i~ 79 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELG---SDLVLPCDVTNDESIDALFATIK 79 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhcc---CCeEEecCCCCHHHHHHHHHHHH
Confidence 3456788888877642 344455588888777777776666666665543 234688888872 1
Q ss_pred -CCCceeEEEeCCcccc---------------------cChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026870 171 -PTELFDLIFDYTFFCA---------------------IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 171 -~~~~fD~I~~~~~~~~---------------------~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~ 219 (231)
.=+.+|.++....|.. ++.-....+.+.+..+|.+||.++..+|-...+
T Consensus 80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r 150 (259)
T COG0623 80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSER 150 (259)
T ss_pred HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEecccee
Confidence 1147888885433321 111122577888889999999999999977654
No 446
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.48 E-value=7.3 Score=32.01 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=60.3
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------CCC---------CceEEEEccCCCCCC
Q 026870 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------PNA---------KFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~~~---------~~i~~~~~d~~~~~~ 171 (231)
.+|--||+|. +..+..++..|..|+..|.+++.++.+.+++... +.. .++++ ..|. +.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH--
Confidence 4788999995 4556666778999999999999998866543221 100 12221 2222 11
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhc-CCCcEEEEEE
Q 026870 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLM 213 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~li~~~ 213 (231)
-...|+|+-. +.+.+ +.+..++..+...+ +|+.++...+
T Consensus 82 ~~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 82 FADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred hCCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1357888743 22322 56677888888888 7777665433
No 447
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=86.40 E-value=1.6 Score=37.00 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=56.0
Q ss_pred CCCcEEEecCC-CchHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEcc---CC----CCCCCCceeE
Q 026870 108 PKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FF----TWCPTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG-~G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~----~~~~~~~fD~ 177 (231)
++.+||-.|+| .|..+..+++ .|.. |++++.++...+.+++.- . ..++... .. .......+|+
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g-~------~~vv~~~~~~~~~~l~~~~~~~~vd~ 254 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFG-A------THTVNASEDDAVEAVRDLTDGRGADY 254 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhC-C------eEEeCCCCccHHHHHHHHcCCCCCCE
Confidence 45788888775 3666666666 7775 999999888777765321 1 1122211 11 1222356898
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
++....- ...+....+.|+++|+++....
T Consensus 255 vld~~~~--------~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 255 AFEAVGR--------AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred EEEcCCC--------hHHHHHHHHHhhcCCeEEEEec
Confidence 8843221 1246778889999999876643
No 448
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=86.35 E-value=1.4 Score=36.47 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=54.6
Q ss_pred CCCcEEEe--cCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee
Q 026870 108 PKGRALVP--GCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD 176 (231)
Q Consensus 108 ~~~~vLDi--GcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD 176 (231)
++..+|-+ |+| .|..+..+++ .|.++++++.+++..+.+++.- . -.++.. ++.+ ......+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g----~---~~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIG----A---EYVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----C---cEEEECCCccHHHHHHHHhCCCCCc
Confidence 44455554 443 3666676776 7889999999998888887621 1 122221 1111 12234689
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
+++.... .. .+....+.|+++|.++.....
T Consensus 215 ~vid~~g-----~~----~~~~~~~~l~~~G~~v~~g~~ 244 (324)
T cd08291 215 IFFDAVG-----GG----LTGQILLAMPYGSTLYVYGYL 244 (324)
T ss_pred EEEECCC-----cH----HHHHHHHhhCCCCEEEEEEec
Confidence 9985322 11 134457788999998876643
No 449
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.26 E-value=3.6 Score=34.29 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=60.2
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCCCC-------CCCce
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWC-------PTELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~~-------~~~~f 175 (231)
.++.++.-+|+|. |.....-++ .|+ +++|+|+++.-.+.|++--.. +|++- |...+. -++.+
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT-------e~iNp~d~~~~i~evi~EmTdgGv 263 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT-------EFINPKDLKKPIQEVIIEMTDGGV 263 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc-------eecChhhccccHHHHHHHHhcCCc
Confidence 4557888888886 444444444 565 999999999999999875432 23321 222211 13567
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccCCCC
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPISDH 219 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~li~~~~~~~~~ 219 (231)
|.-+ .+..+ ...+++.......| |.-+++..+..++
T Consensus 264 Dysf--Ec~G~------~~~m~~al~s~h~GwG~sv~iGv~~~~~ 300 (375)
T KOG0022|consen 264 DYSF--ECIGN------VSTMRAALESCHKGWGKSVVIGVAAAGQ 300 (375)
T ss_pred eEEE--EecCC------HHHHHHHHHHhhcCCCeEEEEEecCCCc
Confidence 7665 22222 23466677777788 8877777766543
No 450
>PRK07035 short chain dehydrogenase; Provisional
Probab=86.17 E-value=4.2 Score=32.19 Aligned_cols=75 Identities=13% Similarity=0.015 Sum_probs=50.6
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
+.++++|-.|++.| ..+..|++.|.+|+.++.++...+...+.....+ .++.++.+|+.+... -
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 44578899998876 3445556689999999998877666555443322 347788888877211 1
Q ss_pred CceeEEEeCCc
Q 026870 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~I~~~~~ 183 (231)
+.+|+++.+..
T Consensus 84 ~~id~li~~ag 94 (252)
T PRK07035 84 GRLDILVNNAA 94 (252)
T ss_pred CCCCEEEECCC
Confidence 35899887654
No 451
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.14 E-value=4 Score=32.43 Aligned_cols=76 Identities=18% Similarity=0.029 Sum_probs=52.4
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
+.++++|-.|++.| ..+..|++.|.+|+.++.+++.++...+.....+ .++.++.+|+.+... -
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45678999998765 3345556689999999999887766655544332 357888999887211 1
Q ss_pred CceeEEEeCCcc
Q 026870 173 ELFDLIFDYTFF 184 (231)
Q Consensus 173 ~~fD~I~~~~~~ 184 (231)
+..|+++.+...
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 478999876543
No 452
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.01 E-value=3.1 Score=32.05 Aligned_cols=72 Identities=26% Similarity=0.159 Sum_probs=51.3
Q ss_pred CCCCcEEEecCC-CchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026870 107 LPKGRALVPGCG-TGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~ 185 (231)
.....+|-+|.= +|.+...+++...+|+.+|+.|.+-... .+++.|... -.++.+.+|+|+..-.+.
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~l---------p~~v~Fr~~---~~~~~G~~DlivDlTGlG 110 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFL---------PNNVKFRNL---LKFIRGEVDLIVDLTGLG 110 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcC---------CCCccHhhh---cCCCCCceeEEEeccccC
Confidence 345799999875 5888888887788999999998764322 234666544 123457899999887777
Q ss_pred ccChH
Q 026870 186 AIEPE 190 (231)
Q Consensus 186 ~~~~~ 190 (231)
-..|+
T Consensus 111 G~~Pe 115 (254)
T COG4017 111 GIEPE 115 (254)
T ss_pred CCCHH
Confidence 77665
No 453
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.81 E-value=2.9 Score=33.12 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=43.5
Q ss_pred cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHH-HhccCCCCCceEEEEccCCCC---CC--CCceeEEEe
Q 026870 111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEE-LSSSLPNAKFVSFLKADFFTW---CP--TELFDLIFD 180 (231)
Q Consensus 111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~-~~~~~~~~~~i~~~~~d~~~~---~~--~~~fD~I~~ 180 (231)
+++-+|||. | ..+..|.+.|..|+.+|.+++.++.... .. ....+.+|..+. .. -..+|++++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 577788875 3 3445555588999999999998777332 22 367888998882 11 236888775
No 454
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=85.69 E-value=2.8 Score=34.94 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=56.7
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC-CCCCCceeEEEeC
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT-WCPTELFDLIFDY 181 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~-~~~~~~fD~I~~~ 181 (231)
++.+||-.|+|. |..+..+++ .|.+++.++.+++..+.+++.-. + .++.. +... ......+|+++..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~-----~--~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGA-----H--HYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCC-----c--EEecCCCccHHHHHHhcCCCCEEEEC
Confidence 457899998654 555556666 78899999999888887754221 1 11211 1111 1111358888853
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
.. . ...+....+.|+++|.++.....
T Consensus 236 ~g----~----~~~~~~~~~~l~~~G~~v~~g~~ 261 (333)
T cd08296 236 AP----N----AKAISALVGGLAPRGKLLILGAA 261 (333)
T ss_pred CC----c----hHHHHHHHHHcccCCEEEEEecC
Confidence 21 0 13467788899999998766543
No 455
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.65 E-value=8.9 Score=31.45 Aligned_cols=95 Identities=16% Similarity=0.049 Sum_probs=57.9
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-CC--------CceEEEEccCCCCCC
Q 026870 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~ 171 (231)
.+|.-||+|. +..+..++..|..|+..|.+++.++.+.+..... + .. .++.+. .+.. .
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLE-D-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHH-H--
Confidence 4788899986 3455666668899999999999988765432211 1 00 112221 2221 1
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
-...|+|+..-. . +.+.+..+++.+...++|+.+++.
T Consensus 81 ~~~aD~Vieavp-e--~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 81 LADCDLVIEAAT-E--DETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred hcCCCEEEEcCc-C--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 135788874311 1 114456778889999999987753
No 456
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=85.62 E-value=1.8 Score=36.14 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=54.6
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC----CCCCCCCceeEEEe
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~fD~I~~ 180 (231)
++.+||-.|+|. |..+..+++ .| .++++++.++.....+++.-. ..-+.....+. ........+|+|+.
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA----THTVNSAKGDAIEQVLELTDGRGVDVVIE 241 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC----CceeccccccHHHHHHHHhCCCCCCEEEE
Confidence 456777777653 445555555 77 688999998887777665321 00011111111 11223346999985
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
.. .. ...+..+.+.|+++|.++...
T Consensus 242 ~~-----g~---~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 242 AV-----GI---PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CC-----CC---HHHHHHHHHhccCCcEEEEec
Confidence 32 11 124677789999999987654
No 457
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=85.54 E-value=1.4 Score=37.42 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=57.9
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-----CCC---CCCCCce
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFT---WCPTELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-----~~~---~~~~~~f 175 (231)
.++.+||-.|+|. |..+..+++ .|. +|++++.+++..+.+++.-.. .++... +.+ ....+.+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVT-------EFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-------eEEcccccchhHHHHHHHHhCCCC
Confidence 4567899998764 555566666 777 799999999988888653211 111111 111 0112368
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026870 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI 216 (231)
Q Consensus 176 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~li~~~~~~ 216 (231)
|+++....- ...+....+.+++| |.+++.....
T Consensus 259 d~vid~~G~--------~~~~~~~~~~~~~~~g~~v~~g~~~ 292 (369)
T cd08301 259 DYSFECTGN--------IDAMISAFECVHDGWGVTVLLGVPH 292 (369)
T ss_pred CEEEECCCC--------hHHHHHHHHHhhcCCCEEEEECcCC
Confidence 988843211 23456677888996 9888776543
No 458
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=85.48 E-value=5 Score=34.27 Aligned_cols=91 Identities=24% Similarity=0.215 Sum_probs=54.8
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHH-HHHHHHHhccCCCCCceEEEEc-c---CCCCCCCCceeEEEe
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIA-IKKAEELSSSLPNAKFVSFLKA-D---FFTWCPTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~-i~~a~~~~~~~~~~~~i~~~~~-d---~~~~~~~~~fD~I~~ 180 (231)
++.+||-.|+|. |..+..+++ .|.++++++.+++. .+.+++. +. + .++.. + +.+.. ..+|+|+.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~l----Ga-~--~~i~~~~~~~v~~~~--~~~D~vid 248 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRL----GA-D--SFLVTTDSQKMKEAV--GTMDFIID 248 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhC----CC-c--EEEcCcCHHHHHHhh--CCCcEEEE
Confidence 567888888865 666677776 78889999987553 4455332 11 1 11111 1 11111 25898884
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
...- ...+....+.++++|.++.....
T Consensus 249 ~~G~--------~~~~~~~~~~l~~~G~iv~vG~~ 275 (375)
T PLN02178 249 TVSA--------EHALLPLFSLLKVSGKLVALGLP 275 (375)
T ss_pred CCCc--------HHHHHHHHHhhcCCCEEEEEccC
Confidence 3211 12466778899999999877654
No 459
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.42 E-value=17 Score=28.99 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=60.8
Q ss_pred CCCCcEEEecCC-CchHH----HHhcCCCCeEEEEeCCh--HHHHHHHHHhccCCCCCceEEEEccCCCCC---------
Q 026870 107 LPKGRALVPGCG-TGYDV----VAMASPERYVVGLEISD--IAIKKAEELSSSLPNAKFVSFLKADFFTWC--------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~----~~l~~~~~~v~~iD~s~--~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--------- 170 (231)
..++++|-.|+| ++... ..|++.|.+|+.++.+. +.++...+... .++.++.+|+.+..
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-----EPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-----CCCcEEeCCCCCHHHHHHHHHHH
Confidence 345789999984 34444 34455889999988653 33443333221 24678889988731
Q ss_pred --CCCceeEEEeCCcccc-------c---ChHHH-----------HHHHHHHHhhcCCCcEEEEEEc
Q 026870 171 --PTELFDLIFDYTFFCA-------I---EPEMR-----------AAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 171 --~~~~fD~I~~~~~~~~-------~---~~~~~-----------~~~l~~~~~~L~pgG~li~~~~ 214 (231)
.-+.+|+++.+..+.. + +.+.. ..+.+.+...|+++|.++...+
T Consensus 80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~ 146 (256)
T PRK07889 80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF 146 (256)
T ss_pred HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence 1257899888654321 1 11211 1344566677788888776654
No 460
>PRK06172 short chain dehydrogenase; Provisional
Probab=85.37 E-value=4.8 Score=31.88 Aligned_cols=75 Identities=19% Similarity=0.109 Sum_probs=50.4
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
+.++++|-.|++.| ..+..|++.|.+|+.++.++..++...+.....+ .++.++.+|+.+... -
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 34578899987654 2344455688999999999877665555443322 458899999987210 1
Q ss_pred CceeEEEeCCc
Q 026870 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~I~~~~~ 183 (231)
+.+|+|+.+..
T Consensus 83 g~id~li~~ag 93 (253)
T PRK06172 83 GRLDYAFNNAG 93 (253)
T ss_pred CCCCEEEECCC
Confidence 36799987654
No 461
>PRK07062 short chain dehydrogenase; Provisional
Probab=85.31 E-value=4.8 Score=32.16 Aligned_cols=78 Identities=14% Similarity=0.019 Sum_probs=51.6
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
+.++.+|-.|++.| ..+..+++.|.+|+.++.+++.++...+.........++.++.+|+.+.. .-
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 44678999998765 33455556899999999998777665554432211135778899988831 11
Q ss_pred CceeEEEeCCcc
Q 026870 173 ELFDLIFDYTFF 184 (231)
Q Consensus 173 ~~fD~I~~~~~~ 184 (231)
+..|+++.+...
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 468998876543
No 462
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=85.29 E-value=2.4 Score=36.88 Aligned_cols=95 Identities=19% Similarity=0.121 Sum_probs=53.5
Q ss_pred CcEEEecCCCc--hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC---CC---------CCceEEEEccCCCCCCCCce
Q 026870 110 GRALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSL---PN---------AKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 110 ~~vLDiGcG~G--~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~---~~---------~~~i~~~~~d~~~~~~~~~f 175 (231)
++|--+|.|.- ..+..|++.|++|+++|.+++.++..+...... ++ ..++.+. . .....
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-~------~~~~a 76 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-T------TPEPA 76 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-c------ccccC
Confidence 46788888853 334455668999999999999888643211000 00 0011111 0 11246
Q ss_pred eEEEeCCccc-----ccChHHHHHHHHHHHhhcCCCcEEEE
Q 026870 176 DLIFDYTFFC-----AIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 176 D~I~~~~~~~-----~~~~~~~~~~l~~~~~~L~pgG~li~ 211 (231)
|+|+..-.-. ..+-......++.+...|++|.+++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~ 117 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVIL 117 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEE
Confidence 7777432211 01114556677888899988876654
No 463
>PRK07890 short chain dehydrogenase; Provisional
Probab=85.25 E-value=4.9 Score=31.84 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=50.1
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 173 (231)
.+++||-.|++.| .++..|++.|.+|+.++.++...+...+.....+ .++.++..|+.+... -+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4578888887654 2344555689999999998877665554443222 357889999987211 14
Q ss_pred ceeEEEeCCcc
Q 026870 174 LFDLIFDYTFF 184 (231)
Q Consensus 174 ~fD~I~~~~~~ 184 (231)
..|+|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68999877543
No 464
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.14 E-value=4.6 Score=32.33 Aligned_cols=77 Identities=17% Similarity=0.059 Sum_probs=53.3
Q ss_pred CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026870 106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------- 171 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------- 171 (231)
...++++|-.|++.| ..+..|++.|.+|+.++.++..++...+.....+ .++.++.+|+.+...
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 345678999998775 3455566689999999998877766655554322 358889999987211
Q ss_pred CCceeEEEeCCcc
Q 026870 172 TELFDLIFDYTFF 184 (231)
Q Consensus 172 ~~~fD~I~~~~~~ 184 (231)
-+.+|+++.+...
T Consensus 85 ~~~id~li~~ag~ 97 (265)
T PRK07097 85 VGVIDILVNNAGI 97 (265)
T ss_pred CCCCCEEEECCCC
Confidence 1468999877543
No 465
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.06 E-value=4 Score=38.16 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=65.0
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-C--------CCceEEEEccCCCCCC
Q 026870 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-N--------AKFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~~ 171 (231)
.+|--||+|+ +..+..++..|..|+.+|.+++.++.+.++.... + . ..++++- .|. + .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~--~ 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-A--G 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-H--H
Confidence 5899999996 4556667778999999999999998876654321 1 0 0123222 121 1 1
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
-...|+|+= .+++.+ +.+.++++++-.+++|+.+|...+
T Consensus 390 ~~~aDlViE-av~E~l--~~K~~vf~~l~~~~~~~~ilasnT 428 (714)
T TIGR02437 390 FDNVDIVVE-AVVENP--KVKAAVLAEVEQHVREDAILASNT 428 (714)
T ss_pred hcCCCEEEE-cCcccH--HHHHHHHHHHHhhCCCCcEEEECC
Confidence 145788873 244444 677899999999999999876544
No 466
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=85.05 E-value=1.7 Score=36.77 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=55.6
Q ss_pred CCCCcEEEecCC-CchHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026870 107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD 176 (231)
.++.+||-.|+| .|..+..+++ .|.+ +++++.+++..+.+++.- . ..++..+-.+ ......+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g-~------~~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELG-A------THTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC-C------ceEecCCcccHHHHHHHHhCCCCCC
Confidence 345677777665 3555555665 6776 999999988887775421 1 1122221111 12234699
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
+|+.... .. ..+..+.++|+++|.++....
T Consensus 259 ~vld~vg-----~~---~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 259 VVVEALG-----KP---ETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred EEEEeCC-----CH---HHHHHHHHHHhcCCEEEEEcc
Confidence 9985321 11 146778889999999876643
No 467
>PRK12743 oxidoreductase; Provisional
Probab=84.96 E-value=18 Score=28.76 Aligned_cols=72 Identities=13% Similarity=-0.018 Sum_probs=43.6
Q ss_pred CcEEEecCCCc---hHHHHhcCCCCeEEEEeC-ChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CCc
Q 026870 110 GRALVPGCGTG---YDVVAMASPERYVVGLEI-SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TEL 174 (231)
Q Consensus 110 ~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~-s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~~ 174 (231)
++||-.|++.| .++..+++.|.+|+.+.. +....+...+.....+ .++.++.+|+.+... -+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57888887654 223344458888888754 4444444433333222 468899999988321 136
Q ss_pred eeEEEeCCc
Q 026870 175 FDLIFDYTF 183 (231)
Q Consensus 175 fD~I~~~~~ 183 (231)
.|.++++..
T Consensus 81 id~li~~ag 89 (256)
T PRK12743 81 IDVLVNNAG 89 (256)
T ss_pred CCEEEECCC
Confidence 899987654
No 468
>PRK06484 short chain dehydrogenase; Validated
Probab=84.92 E-value=13 Score=33.19 Aligned_cols=71 Identities=14% Similarity=0.029 Sum_probs=49.0
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 173 (231)
.++.+|-.|++.| ..+..|++.|.+|+.++.+...++...+... .++.++.+|+.+... -+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG-----PDHHALAMDVSDEAQIREGFEQLHREFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4568888888776 4455566689999999998877665544331 246788899887311 14
Q ss_pred ceeEEEeCCc
Q 026870 174 LFDLIFDYTF 183 (231)
Q Consensus 174 ~fD~I~~~~~ 183 (231)
..|+++.+..
T Consensus 79 ~iD~li~nag 88 (520)
T PRK06484 79 RIDVLVNNAG 88 (520)
T ss_pred CCCEEEECCC
Confidence 6899887754
No 469
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=84.90 E-value=3.9 Score=34.40 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=63.4
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCC---CCCCCcee
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT---WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~---~~~~~~fD 176 (231)
.++.+|.-+|||. |..+..-++ .|. +++++|++++.++.|++--.. ++++. |+.+ ....+..|
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT-------~~vn~~~~~~vv~~i~~~T~gG~d 256 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT-------HFVNPKEVDDVVEAIVELTDGGAD 256 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCc-------eeecchhhhhHHHHHHHhcCCCCC
Confidence 4567999999986 666666665 454 899999999999999885432 33332 2222 11123566
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026870 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 177 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~ 219 (231)
..+-. ..+ ...++....++.++|..++...+..++
T Consensus 257 ~~~e~--~G~------~~~~~~al~~~~~~G~~v~iGv~~~~~ 291 (366)
T COG1062 257 YAFEC--VGN------VEVMRQALEATHRGGTSVIIGVAGAGQ 291 (366)
T ss_pred EEEEc--cCC------HHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 66521 111 235677777778899999988876544
No 470
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=84.82 E-value=4.2 Score=32.87 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=51.3
Q ss_pred CCcEEEecCCCch-------HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeC
Q 026870 109 KGRALVPGCGTGY-------DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (231)
Q Consensus 109 ~~~vLDiGcG~G~-------~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~ 181 (231)
.++||-+|+|+-. ....+...+..++-.|+.+- +++.-..+.+|.....++..+|+|++-
T Consensus 62 nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc~t~~~~~k~DlIiSD 128 (299)
T PF06460_consen 62 NMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDCRTYMPPDKFDLIISD 128 (299)
T ss_dssp T-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-GGGEEESS-EEEEEE-
T ss_pred CcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccccccCCCCcccEEEEe
Confidence 4899999999742 34555557788888888653 123345678898887778899999975
Q ss_pred Cc--------ccccChH-HHHHHHHHHHhhcCCCcEEEEE
Q 026870 182 TF--------FCAIEPE-MRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 182 ~~--------~~~~~~~-~~~~~l~~~~~~L~pgG~li~~ 212 (231)
.- ....+.+ -..-+..-+.+.|+-||.+.+-
T Consensus 129 mYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 129 MYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp ---TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 32 1112222 2234556677899999998763
No 471
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.81 E-value=19 Score=29.12 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=59.6
Q ss_pred CCCcEEEecCC--C--c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026870 108 PKGRALVPGCG--T--G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (231)
Q Consensus 108 ~~~~vLDiGcG--~--G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 171 (231)
.++.+|-.|++ . | ..+..|++.|.+|+.++.+++..+.+.+.....+ .. .++.+|+.+.. .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 45789999985 2 3 2345555689999999988643333333222222 12 56788988832 1
Q ss_pred CCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026870 172 TELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~li~~~ 213 (231)
-+.+|+++.+..+.. .+.++. ..+.+.+...|+.+|.++...
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 257899888755321 122222 234456666777778766544
No 472
>PRK08339 short chain dehydrogenase; Provisional
Probab=84.67 E-value=6 Score=31.79 Aligned_cols=76 Identities=24% Similarity=0.116 Sum_probs=51.5
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----------CCC
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------PTE 173 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 173 (231)
+.++++|-.|++.| ..+..|++.|.+|+.++.++..++...+...... ..++.++.+|+.+.. .-+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 45678898888765 3455666689999999999877766655443211 135888999998831 114
Q ss_pred ceeEEEeCCc
Q 026870 174 LFDLIFDYTF 183 (231)
Q Consensus 174 ~fD~I~~~~~ 183 (231)
..|+++.+..
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 6888887643
No 473
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=84.52 E-value=6.1 Score=32.90 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=55.7
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC----CC-----CCCCCceeEE
Q 026870 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FT-----WCPTELFDLI 178 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~-----~~~~~~fD~I 178 (231)
++|+-+|+|. |+++..|++.|..|+.+--++. ++..+++- +.+....- .. ......+|+|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~G--------L~i~~~~~~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKG--------LRIEDEGGNFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCC--------eEEecCCCccccccccccChhhcCCCCEE
Confidence 4788999997 6778888888854555545444 66666541 22222211 01 1122479999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
+..-= .-+...++..+...+++...+++..-
T Consensus 72 iv~vK-----a~q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 72 IVTVK-----AYQLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred EEEec-----cccHHHHHHHhhhcCCCCcEEEEEeC
Confidence 83211 12446788999999999998776553
No 474
>PRK06484 short chain dehydrogenase; Validated
Probab=84.48 E-value=18 Score=32.24 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=62.7
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CCC
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~ 173 (231)
.++.+|-.|++.| ..+..|++.|.+|+.++.++..++...+... .++..+.+|+.+.. .-+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG-----DEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4578888888766 3455566689999999998877766554331 24567888888721 014
Q ss_pred ceeEEEeCCccc-------ccChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026870 174 LFDLIFDYTFFC-------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 174 ~fD~I~~~~~~~-------~~~~~~~-----------~~~l~~~~~~L~pgG~li~~~ 213 (231)
..|+++.+.... ..+.+.. ..+++.+...|+.+|.++++.
T Consensus 343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 689998765432 1122221 133555566667778766543
No 475
>PRK06914 short chain dehydrogenase; Provisional
Probab=84.41 E-value=6.3 Score=31.78 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=47.5
Q ss_pred CcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------CCcee
Q 026870 110 GRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------TELFD 176 (231)
Q Consensus 110 ~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~fD 176 (231)
+++|-.|++.| .++..|++.|++|++++-++...+...+.....+...++.++.+|+.+... -+..|
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 83 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRID 83 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCee
Confidence 56788886544 233445568999999998877665554433322223468899999988321 13578
Q ss_pred EEEeCCc
Q 026870 177 LIFDYTF 183 (231)
Q Consensus 177 ~I~~~~~ 183 (231)
.|+....
T Consensus 84 ~vv~~ag 90 (280)
T PRK06914 84 LLVNNAG 90 (280)
T ss_pred EEEECCc
Confidence 8887643
No 476
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.23 E-value=3.1 Score=34.26 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=57.0
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-------cCCC-C--------CceEEEEccCCCCCC
Q 026870 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSS-------SLPN-A--------KFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-------~~~~-~--------~~i~~~~~d~~~~~~ 171 (231)
.+|--||+|. ...+..++..|.+|+++|.+++.++.+++... ..+. . .++.+ ..+. +.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~-~~-- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNL-EE-- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCH-HH--
Confidence 4688889985 35556666788999999999998876654322 1110 0 01111 1121 11
Q ss_pred CCceeEEEeCCcccccC--hHHHHHHHHHHHhhcCCCcEEE
Q 026870 172 TELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~li 210 (231)
-...|+|+.. ++ ++....++.++...++|+.+|+
T Consensus 81 ~~~aD~Viea-----v~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 LRDADFIIEA-----IVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred hCCCCEEEEc-----CccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1346888742 33 4666788888888889988664
No 477
>PRK07677 short chain dehydrogenase; Provisional
Probab=84.22 E-value=5.3 Score=31.67 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=47.3
Q ss_pred CcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CCCce
Q 026870 110 GRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELF 175 (231)
Q Consensus 110 ~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~f 175 (231)
+++|-.|++.| ..+..+++.|.+|+.++.++...+...+.....+ .++.++.+|+.+.. .-+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 57888888665 2344555689999999998876665554443222 35889999987721 01368
Q ss_pred eEEEeCC
Q 026870 176 DLIFDYT 182 (231)
Q Consensus 176 D~I~~~~ 182 (231)
|.++.+.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 9988764
No 478
>PRK06182 short chain dehydrogenase; Validated
Probab=84.11 E-value=14 Score=29.62 Aligned_cols=68 Identities=19% Similarity=0.128 Sum_probs=44.1
Q ss_pred CCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CCCc
Q 026870 109 KGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTEL 174 (231)
Q Consensus 109 ~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~ 174 (231)
++++|-.|++.| .++..+++.|.+|++++.+++.++.... .+++++.+|+.+.. ..+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 357888886544 2233344588999999998776543321 13778889988821 1236
Q ss_pred eeEEEeCCcc
Q 026870 175 FDLIFDYTFF 184 (231)
Q Consensus 175 fD~I~~~~~~ 184 (231)
.|+++.+...
T Consensus 75 id~li~~ag~ 84 (273)
T PRK06182 75 IDVLVNNAGY 84 (273)
T ss_pred CCEEEECCCc
Confidence 8999987654
No 479
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.11 E-value=7.2 Score=32.35 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=55.2
Q ss_pred cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC------CCCceEEEEccCCCCCCCCceeEEEeCC
Q 026870 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~------~~~~i~~~~~d~~~~~~~~~fD~I~~~~ 182 (231)
+|.-+|+|. +..+..|++.|..|+.+|.++..++..++...... ...++.+ ..+..+. ....|+|+..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~D~vi~~- 78 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA--LADADLILVA- 78 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH--HhCCCEEEEe-
Confidence 677888875 34455566688899999999888777665321100 0001111 1111111 1356888743
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
+++.....++..+...++++.+++..
T Consensus 79 ----v~~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 79 ----VPSQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred ----CCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 23345567778888888888776644
No 480
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=83.99 E-value=11 Score=32.40 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=62.9
Q ss_pred CCCcEEEecCCCch----HHHHhcC-CC----CeEEEEeC----ChHHHHHHHHHhccCC--CCCceEEEE---ccCCCC
Q 026870 108 PKGRALVPGCGTGY----DVVAMAS-PE----RYVVGLEI----SDIAIKKAEELSSSLP--NAKFVSFLK---ADFFTW 169 (231)
Q Consensus 108 ~~~~vLDiGcG~G~----~~~~l~~-~~----~~v~~iD~----s~~~i~~a~~~~~~~~--~~~~i~~~~---~d~~~~ 169 (231)
..-+|+|+|.|.|. +...|+. ++ .++++|+. +...++...+++.+.. +.-..+|.. .++.+.
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 34699999999993 4455554 22 38999999 7777776666543321 111233333 222222
Q ss_pred C------CCCceeEEEeCCcccccCh------HHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCCCC
Q 026870 170 C------PTELFDLIFDYTFFCAIEP------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK 226 (231)
Q Consensus 170 ~------~~~~fD~I~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~ 226 (231)
. ..+..=+|-|...+||+.. ..+..+|+.+ +.|+|.-++ +++.. .+.+.|+|-
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv-~~E~e--a~~n~~~F~ 254 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVV-LVEQE--ADHNSPSFL 254 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEE-EEeec--CCCCCCchH
Confidence 1 1233444445566788752 1244566555 477999544 44443 334556653
No 481
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.91 E-value=21 Score=28.82 Aligned_cols=104 Identities=17% Similarity=0.137 Sum_probs=59.0
Q ss_pred CCCcEEEecCC-CchH----HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026870 108 PKGRALVPGCG-TGYD----VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (231)
Q Consensus 108 ~~~~vLDiGcG-~G~~----~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 171 (231)
.++.+|-.|++ ++.. +..|++.|.+|+.+..++...+.+.+.....+ ...++.+|+.+.. .
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHHh
Confidence 45689999975 2333 44555689999888765433333333322221 2456888987721 1
Q ss_pred CCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEEc
Q 026870 172 TELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~li~~~~ 214 (231)
-+..|+++.+..+.. .+.+.. ..+++.+...|+.+|.++....
T Consensus 86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss 149 (272)
T PRK08159 86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTY 149 (272)
T ss_pred cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 246899998754321 122211 2444555667777788766553
No 482
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.87 E-value=5.3 Score=37.41 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=64.4
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-C--------CCceEEEEccCCCCCC
Q 026870 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-N--------AKFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~~ 171 (231)
.+|--||+|+ ...+..++..|..|+.+|.+++.++.+.++.... + . ..++++. .|+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG--- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH---
Confidence 5899999998 4556666778999999999999998776543221 1 0 1133322 22211
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
-...|+|+= .+.+.+ +.+.++++++-..++|+.+|...+
T Consensus 390 ~~~aDlViE-av~E~l--~~K~~vf~~l~~~~~~~~ilasNT 428 (715)
T PRK11730 390 FERVDVVVE-AVVENP--KVKAAVLAEVEQKVREDTILASNT 428 (715)
T ss_pred hcCCCEEEe-cccCcH--HHHHHHHHHHHhhCCCCcEEEEcC
Confidence 135788773 233433 677889999999999998776544
No 483
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=83.83 E-value=3.2 Score=32.76 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=48.6
Q ss_pred HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026870 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
...++.+. .+...-|++||.|.|..+..+...|. +...+|.+...+.-.+...+... .+..+..+|+..
T Consensus 39 T~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR 109 (326)
T KOG0821|consen 39 TDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR 109 (326)
T ss_pred HHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence 34444443 45668999999999999999998775 78888988888777665554332 345556666544
No 484
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=83.80 E-value=3.7 Score=38.59 Aligned_cols=97 Identities=8% Similarity=0.067 Sum_probs=65.2
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-CC--------CceEEEEccCCCCCC
Q 026870 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~ 171 (231)
.+|--||+|+ +..+..++..|..|+.+|.+++.++.+.+++... + .. .++++. .|+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG--- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH---
Confidence 5899999996 4556666778999999999999998876654321 1 00 123322 12211
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
-...|+|+= .+++.+ +.+.++++++-..++|+.+|...+
T Consensus 412 ~~~aDlViE-Av~E~l--~~K~~vf~~l~~~~~~~~ilasNT 450 (737)
T TIGR02441 412 FKNADMVIE-AVFEDL--SLKHKVIKEVEAVVPPHCIIASNT 450 (737)
T ss_pred hccCCeehh-hccccH--HHHHHHHHHHHhhCCCCcEEEEcC
Confidence 135787762 344444 677899999999999999887644
No 485
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.67 E-value=5.7 Score=37.15 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=64.3
Q ss_pred CcEEEecCCC--chHHHHhc-CCCCeEEEEeCChHHHHHHHHHhccC-------C-C--------CCceEEEEccCCCCC
Q 026870 110 GRALVPGCGT--GYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSL-------P-N--------AKFVSFLKADFFTWC 170 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~-~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 170 (231)
.+|.-||+|+ ...+..++ ..|..|+.+|.+++.++.+.+++... + . ..++++. .|. +.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-RG- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-HH-
Confidence 5899999998 35555566 67999999999999988876544321 1 0 1133333 122 11
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026870 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 213 (231)
-...|+|+= .+++.+ +.+.++++++-+.++|+.+|...+
T Consensus 387 -~~~aDlViE-av~E~~--~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 387 -FKHADVVIE-AVFEDL--ALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred -hccCCEEee-cccccH--HHHHHHHHHHHhhCCCCcEEEECC
Confidence 135788773 234433 677889999999999999887544
No 486
>PRK08507 prephenate dehydrogenase; Validated
Probab=83.64 E-value=5.2 Score=32.52 Aligned_cols=83 Identities=25% Similarity=0.251 Sum_probs=49.3
Q ss_pred cEEEecCCC--chHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026870 111 RALVPGCGT--GYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 111 ~vLDiGcG~--G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~I~~~~~~~~ 186 (231)
+|.-||+|. |.++..|.+.|. .|+++|.+++.++.+.+. +. +.. ..+..+. . ..|+|+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~----g~---~~~-~~~~~~~--~-~aD~Vila----- 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL----GL---VDE-IVSFEEL--K-KCDVIFLA----- 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC----CC---Ccc-cCCHHHH--h-cCCEEEEe-----
Confidence 566788876 445566666664 799999999887766532 11 101 1121121 1 26887732
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEE
Q 026870 187 IEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~li 210 (231)
++++....++..+.. ++++..++
T Consensus 66 vp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 66 IPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred CcHHHHHHHHHHHhc-cCCCCEEE
Confidence 455556677777777 77776443
No 487
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=83.62 E-value=2.4 Score=35.58 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=55.7
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCceeE
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD~ 177 (231)
++.+||-.|+|. |..+..+++ .|. +|+.++.+++..+.+.+.- . + .++...-.+ .... .+|+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g----~-~--~~~~~~~~~~~~~~~~~~~~-~~d~ 246 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAG----A-D--VVVNGSDPDAAKRIIKAAGG-GVDA 246 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC----C-c--EEecCCCccHHHHHHHHhCC-CCcE
Confidence 457888887753 555666666 777 7999999888887775421 1 0 122211111 1122 6899
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 214 (231)
++..... ...+....+.|+++|.++....
T Consensus 247 vid~~g~--------~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 247 VIDFVNN--------SATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred EEECCCC--------HHHHHHHHHHhhcCCeEEEECC
Confidence 8843221 1247788899999999876543
No 488
>PRK09072 short chain dehydrogenase; Provisional
Probab=83.54 E-value=7.8 Score=30.93 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=50.5
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------CCc
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------TEL 174 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~ 174 (231)
+++++|-.|++.| ..+..+++.|.+|++++.+++.++...... .. ..++.++.+|+.+... .+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 4568888887654 244555668999999999988776665444 21 2468899999988321 145
Q ss_pred eeEEEeCCcc
Q 026870 175 FDLIFDYTFF 184 (231)
Q Consensus 175 fD~I~~~~~~ 184 (231)
.|.++.....
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7999887543
No 489
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=83.51 E-value=0.95 Score=34.35 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=28.6
Q ss_pred CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHH
Q 026870 106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIK 144 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~ 144 (231)
.+.+.+|.-+|+|. |.....+++ .|.+|+++|.+...-.
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence 45568999999986 555555554 8889999999988655
No 490
>PRK07814 short chain dehydrogenase; Provisional
Probab=83.43 E-value=6.9 Score=31.29 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=49.6
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
.+++++|-.|++.| ..+..|++.|.+|++++.+++.++...+.....+ .++.++.+|+.+... -
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45678999996543 2334455589999999999877665554443222 357888999888321 1
Q ss_pred CceeEEEeCCc
Q 026870 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~I~~~~~ 183 (231)
+.+|+|+....
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 36899987643
No 491
>PRK09186 flagellin modification protein A; Provisional
Probab=83.33 E-value=6.6 Score=31.07 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=47.6
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CC
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~ 173 (231)
.+++||-.|++.| ..+..|++.|.+|+.++.+++.++...+..........+.++.+|+.+.. . -+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3568888887554 22444555889999999988777665544422111234677889998721 1 13
Q ss_pred ceeEEEeCC
Q 026870 174 LFDLIFDYT 182 (231)
Q Consensus 174 ~fD~I~~~~ 182 (231)
..|+++.+.
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 479998765
No 492
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.31 E-value=11 Score=31.63 Aligned_cols=101 Identities=19% Similarity=0.108 Sum_probs=60.3
Q ss_pred CCCCcEEEecCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEE-EccCCCCCCCCceeEEEeCCc
Q 026870 107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFL-KADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~-~~d~~~~~~~~~fD~I~~~~~ 183 (231)
.|+++|--+|.| -|..+..+++ .|.+|+++|-+...-+.+-+.+.... -+.+. ..|+.+.. .+..|.++..-.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~---fv~~~~d~d~~~~~-~~~~dg~~~~v~ 255 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADV---FVDSTEDPDIMKAI-MKTTDGGIDTVS 255 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcce---eEEecCCHHHHHHH-HHhhcCcceeee
Confidence 366666666654 6999999998 89999999999866666655543221 12221 22222211 123444432111
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026870 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 217 (231)
.+ ....+..+..+||++|.++++..+..
T Consensus 256 --~~----a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 256 --NL----AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred --ec----cccchHHHHHHhhcCCEEEEEeCcCC
Confidence 01 11235678899999999999888775
No 493
>PRK12742 oxidoreductase; Provisional
Probab=83.27 E-value=19 Score=27.94 Aligned_cols=100 Identities=12% Similarity=0.046 Sum_probs=54.6
Q ss_pred CCCCcEEEecCCCc--h-HHHHhcCCCCeEEEEeC-ChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCce
Q 026870 107 LPKGRALVPGCGTG--Y-DVVAMASPERYVVGLEI-SDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~G--~-~~~~l~~~~~~v~~iD~-s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~f 175 (231)
+.+++||-.|++.| . .+..|++.|.+|+.+.. +++..+...+.. .+.++..|+.+.. ..+.+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-------GATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-------CCeEEecCCCCHHHHHHHHHHhCCC
Confidence 34578998887554 2 33445558888887754 344333322221 2456778876621 12458
Q ss_pred eEEEeCCcccc------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026870 176 DLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 176 D~I~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~pgG~li~~~ 213 (231)
|+++.+..... .+.++. ..+++.+...++.+|.+++..
T Consensus 77 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 131 (237)
T PRK12742 77 DILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIG 131 (237)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 99887654322 122221 123355666677778776543
No 494
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.78 E-value=7.6 Score=30.53 Aligned_cols=74 Identities=15% Similarity=0.034 Sum_probs=49.0
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 173 (231)
.++++|-.|++.| .++..|++.|.+|++++.++...+........ ..++.++.+|+.+... .+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4568888887543 23445556899999999998766655444332 2358899999988221 13
Q ss_pred ceeEEEeCCcc
Q 026870 174 LFDLIFDYTFF 184 (231)
Q Consensus 174 ~fD~I~~~~~~ 184 (231)
.+|+|+.....
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 68999876543
No 495
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.75 E-value=7.2 Score=30.94 Aligned_cols=75 Identities=17% Similarity=0.025 Sum_probs=49.6
Q ss_pred CCCCcEEEecCCCchHH----HHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026870 107 LPKGRALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~----~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 171 (231)
+.+++||-.|++ |..+ ..|++.|.+|+.++.++..++...+.....+ .++.++.+|+.+.. .
T Consensus 8 ~~~k~vlItGa~-g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 8 LTGRRALVTGSS-QGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCEEEEECCc-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 456789988864 4444 3444589999999999877665555443322 35788899998721 1
Q ss_pred CCceeEEEeCCcc
Q 026870 172 TELFDLIFDYTFF 184 (231)
Q Consensus 172 ~~~fD~I~~~~~~ 184 (231)
-+..|+++.+...
T Consensus 85 ~~~~d~li~~ag~ 97 (255)
T PRK07523 85 IGPIDILVNNAGM 97 (255)
T ss_pred cCCCCEEEECCCC
Confidence 1358998887543
No 496
>PRK09242 tropinone reductase; Provisional
Probab=82.65 E-value=7.4 Score=30.91 Aligned_cols=78 Identities=15% Similarity=-0.007 Sum_probs=50.7
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026870 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
+.++++|-.|++.| ..+..+++.|.+|+.++.+++..+...+......-..++.++.+|+.+.. .-
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 34578999988654 33445555899999999988776655544432211235888899998721 11
Q ss_pred CceeEEEeCCcc
Q 026870 173 ELFDLIFDYTFF 184 (231)
Q Consensus 173 ~~fD~I~~~~~~ 184 (231)
+.+|+++.....
T Consensus 87 g~id~li~~ag~ 98 (257)
T PRK09242 87 DGLHILVNNAGG 98 (257)
T ss_pred CCCCEEEECCCC
Confidence 468998876543
No 497
>PRK07478 short chain dehydrogenase; Provisional
Probab=82.60 E-value=7.8 Score=30.72 Aligned_cols=74 Identities=14% Similarity=0.007 Sum_probs=50.4
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CCC
Q 026870 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~ 173 (231)
.++++|-.|++.| ..+..|++.|.+|+.++.++..++...+.....+ .++.++.+|+.+.. .-+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4568888887765 3345556689999999998887766655543332 35788899988731 013
Q ss_pred ceeEEEeCCc
Q 026870 174 LFDLIFDYTF 183 (231)
Q Consensus 174 ~fD~I~~~~~ 183 (231)
..|+++.+..
T Consensus 83 ~id~li~~ag 92 (254)
T PRK07478 83 GLDIAFNNAG 92 (254)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 498
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.51 E-value=3 Score=34.76 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=54.9
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc---C----CCCCCCCceeE
Q 026870 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---F----FTWCPTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~----~~~~~~~~fD~ 177 (231)
++.+||-.|||. |..+..+++ .|. .+++++.+++..+.+++.-. + .++... . ........+|+
T Consensus 168 ~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga-----~--~v~~~~~~~~~~~i~~~~~~~~~d~ 240 (345)
T cd08287 168 PGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGA-----T--DIVAERGEEAVARVRELTGGVGADA 240 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-----c--eEecCCcccHHHHHHHhcCCCCCCE
Confidence 445777677764 566666666 676 48999988876666554211 0 111111 1 11223346898
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 178 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
++.... . ...+....+.++++|.++.....
T Consensus 241 il~~~g-----~---~~~~~~~~~~l~~~g~~v~~g~~ 270 (345)
T cd08287 241 VLECVG-----T---QESMEQAIAIARPGGRVGYVGVP 270 (345)
T ss_pred EEECCC-----C---HHHHHHHHHhhccCCEEEEeccc
Confidence 884321 1 23577888999999998776543
No 499
>PRK10083 putative oxidoreductase; Provisional
Probab=82.41 E-value=3.6 Score=34.21 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=56.2
Q ss_pred CCCCcEEEecCCC-chHHHHhcC--CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEe
Q 026870 107 LPKGRALVPGCGT-GYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~--~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~I~~ 180 (231)
.++.+||-.|+|. |..+..+++ .|. .++++|.+++..+.+++.-... -+.....++.+... ...+|+|+.
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~----~i~~~~~~~~~~~~~~g~~~d~vid 234 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW----VINNAQEPLGEALEEKGIKPTLIID 234 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE----EecCccccHHHHHhcCCCCCCEEEE
Confidence 3457888899764 555666665 377 5888999998888877642111 01111111111111 113457764
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026870 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 215 (231)
...- ...+....++|+++|.++.....
T Consensus 235 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 235 AACH--------PSILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred CCCC--------HHHHHHHHHHhhcCCEEEEEccC
Confidence 2210 12467788899999999877654
No 500
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=82.29 E-value=12 Score=32.43 Aligned_cols=97 Identities=20% Similarity=0.318 Sum_probs=56.9
Q ss_pred CCCcEEEec-CC-CchHHHHhcC-CC--C-eEEEEeCChHHHHHHHHHhccCCC--CCceEEEEc----cCCC----CCC
Q 026870 108 PKGRALVPG-CG-TGYDVVAMAS-PE--R-YVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKA----DFFT----WCP 171 (231)
Q Consensus 108 ~~~~vLDiG-cG-~G~~~~~l~~-~~--~-~v~~iD~s~~~i~~a~~~~~~~~~--~~~i~~~~~----d~~~----~~~ 171 (231)
++.+||-+| +| .|..+..+++ .| . +|+++|.+++.++.+++....... .....++.. ++.+ ...
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence 456888887 34 4778777777 33 3 799999999999998875321100 001112211 1111 112
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026870 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 172 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 212 (231)
...+|+|+....- ...+....++++++|.+++.
T Consensus 255 g~g~D~vid~~g~--------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 255 GQGFDDVFVFVPV--------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCEEEEcCCC--------HHHHHHHHHHhccCCeEEEE
Confidence 3468988853211 23467778899988876554
Done!