BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026875
MKEMTGSGIFAAGAENDESESGSANPTPNNKTGLRMYQQAIAGISHISFGEEDSISPKKP
TTLPEVAKQRELSGTLESESEAKLKKQISDAKSKELSGHDIFAPPPEILPRPAVRALALK
ENFNLGDSAPQDVQTSVGVLTPAGDQSSISSTEEPVMKTSKKIYDKKFSELSGNDIFKGD
VPPSSAEKPLSVAKLREMSGSNIFADGKVESRDYLGGVRKPPGGESSIALV

High Scoring Gene Products

Symbol, full name Information P value
AT4G39860 protein from Arabidopsis thaliana 4.4e-68
AT2G22270 protein from Arabidopsis thaliana 2.2e-43
AT1G35780 protein from Arabidopsis thaliana 5.7e-43

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026875
        (231 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2140000 - symbol:AT4G39860 "AT4G39860" species...   691  4.4e-68   1
TAIR|locus:2060425 - symbol:AT2G22270 "AT2G22270" species...   458  2.2e-43   1
TAIR|locus:2011375 - symbol:AT1G35780 "AT1G35780" species...   454  5.7e-43   1


>TAIR|locus:2140000 [details] [associations]
            symbol:AT4G39860 "AT4G39860" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0000280
            "nuclear division" evidence=RCA] [GO:0000911 "cytokinesis by cell
            plate formation" evidence=RCA] [GO:0006342 "chromatin silencing"
            evidence=RCA] [GO:0007000 "nucleolus organization" evidence=RCA]
            [GO:0008283 "cell proliferation" evidence=RCA] [GO:0016572 "histone
            phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
            methylation" evidence=RCA] GO:GO:0005634 GO:GO:0005737
            EMBL:CP002687 EMBL:AL161596 EMBL:AL035708 ProtClustDB:CLSN2685884
            InterPro:IPR025131 Pfam:PF13266 IPI:IPI00547768 PIR:T06092
            RefSeq:NP_195696.1 UniGene:At.27171 STRING:Q9SMR7 PRIDE:Q9SMR7
            EnsemblPlants:AT4G39860.1 GeneID:830145 KEGG:ath:AT4G39860
            TAIR:At4g39860 InParanoid:Q9SMR7 OMA:GYKLKEM PhylomeDB:Q9SMR7
            Genevestigator:Q9SMR7 Uniprot:Q9SMR7
        Length = 299

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 145/233 (62%), Positives = 179/233 (76%)

Query:     1 MKEMTGSGIFAAGAENDESESGS-ANPTPNNKTGLRMYQQAIAGISHISFGEEDSISPKK 59
             +KEMTGSGIF      D+ + GS ++ T + KTGLR YQQ + G+S ISF  + ++SPKK
Sbjct:    72 LKEMTGSGIFT-----DKGKVGSESDATTDPKTGLRYYQQTLNGMSQISFSADGNVSPKK 126

Query:    60 PTTLPEVAKQRELSGTLESESEAKLKKQISDAKSKELSGHDIFAPPPEILPRPAVRALA- 118
             PTTL EVAKQRELSG L +E++ K  KQIS AK +E+SGHDIFAPP EI PR  V A   
Sbjct:   127 PTTLTEVAKQRELSGNLLTEADLKSNKQISSAKIEEISGHDIFAPPSEIQPRSLVAAQQE 186

Query:   119 LKENFNLGDSAPQDVQTSVGVLTPAGDQSSISSTEEPVMKTSKKIYDKKFSELSGNDIFK 178
              + N ++G+ AP++++TSV V  PAG QS+I  +EEPV+KTSKKI+++KF EL+GN IFK
Sbjct:   187 ARGNRDMGEPAPRNLRTSVKVSNPAGGQSNILFSEEPVVKTSKKIHNQKFQELTGNGIFK 246

Query:   179 GDVPPSSAEKPLSVAKLREMSGSNIFADGKVESRDYLGGVRKPPGGESSIALV 231
             GD  P SA+K LS AKLREMSG+NIFADGK ESRDY GGVRKPPGGESSI+LV
Sbjct:   247 GDESPGSADKQLSSAKLREMSGNNIFADGKSESRDYFGGVRKPPGGESSISLV 299


>TAIR|locus:2060425 [details] [associations]
            symbol:AT2G22270 "AT2G22270" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC007168
            HOGENOM:HOG000239183 ProtClustDB:CLSN2685884 InterPro:IPR025131
            Pfam:PF13266 IPI:IPI00539460 PIR:G84610 RefSeq:NP_565531.1
            UniGene:At.21395 PRIDE:Q9SID9 EnsemblPlants:AT2G22270.1
            GeneID:816760 KEGG:ath:AT2G22270 TAIR:At2g22270 eggNOG:NOG309446
            InParanoid:Q9SID9 OMA:RIHYHQD PhylomeDB:Q9SID9 ArrayExpress:Q9SID9
            Genevestigator:Q9SID9 Uniprot:Q9SID9
        Length = 328

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 112/232 (48%), Positives = 149/232 (64%)

Query:     7 SGIFAAGAENDESESGSANPTPNNKTGLRMYQQAIAGISHISFGEEDSISPKKPTTLPEV 66
             S I  +G EN  +     +  PN++T +  +Q      S ISF  E++++PKKPTTL E 
Sbjct:   104 SQISFSGEENATTPMNGKDD-PNHQTRIHYHQDQR---SQISFSGEENVTPKKPTTLNEA 159

Query:    67 AKQRELSGTLESESEAKLKK-QISDAKSKELSGHDIFAPPPEILPRPAVRALA---LKEN 122
             AKQ+ELS T+E+++++K KK QIS+ K+K +SGHDIFA P E  PR          +K N
Sbjct:   160 AKQKELSRTVETQADSKCKKKQISNTKNKAMSGHDIFASP-ESQPRRLFGGATQSEVKGN 218

Query:   123 FNLGDSAPQDVQTSVGVLTPAGDQSSISSTEEPVMKTSKKIYDKK--FSELSGNDIFKGD 180
              N  +SAP+  + SV   T  G  S+   +EE V+K+SKKI+++K  F  L+ N IFK D
Sbjct:   219 KNTEESAPRSSRASVK--TSNGQSSNRLFSEEHVVKSSKKIHNQKSQFQGLTSNGIFKSD 276

Query:   181 -VPPSSAEKPLSVAKLREMSGSNIFADGKVESRDYLGGVRKPPGGESSIALV 231
              +PP  +EK  S AK REMSG NIFADGK E RDY GG R+PPGGESSI+LV
Sbjct:   277 KIPPGYSEKMQSSAKKREMSGHNIFADGKSEYRDYYGGARRPPGGESSISLV 328


>TAIR|locus:2011375 [details] [associations]
            symbol:AT1G35780 "AT1G35780" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC021198
            EMBL:AF428333 EMBL:AY063902 EMBL:AY122925 IPI:IPI00542942
            PIR:A86480 RefSeq:NP_564463.1 UniGene:At.25479 UniGene:At.74755
            PaxDb:Q9LP18 PRIDE:Q9LP18 EnsemblPlants:AT1G35780.1 GeneID:840483
            KEGG:ath:AT1G35780 TAIR:At1g35780 eggNOG:NOG327187
            HOGENOM:HOG000239183 InParanoid:Q9LP18 OMA:SGNNVFK PhylomeDB:Q9LP18
            ProtClustDB:CLSN2685884 ArrayExpress:Q9LP18 Genevestigator:Q9LP18
            InterPro:IPR025131 Pfam:PF13266 Uniprot:Q9LP18
        Length = 286

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 103/187 (55%), Positives = 130/187 (69%)

Query:     1 MKEMTGSGIFAAGAENDESESGSANPTPNNKTGLRMYQQAIAGI-SHISFGEEDSISPKK 59
             MKE+TGSGIF+   END+SE  SAN   N K+  R +QQ  A I SHISFGEE+ ++PKK
Sbjct:    75 MKEITGSGIFSVYEENDDSELASANSATNGKS--RTFQQPPAAIMSHISFGEEEIVTPKK 132

Query:    60 PTTLPEVAKQRELSGTLESESEAKLKKQISDAKSKELSGHDIFAPPPEILPRPAVRALAL 119
             P T+PEVAKQRELSGTLE +S+AKL KQ SDAK KELSGH+IFAPPPEI  RP VRALA 
Sbjct:   133 PATVPEVAKQRELSGTLEYQSDAKLNKQFSDAKCKELSGHNIFAPPPEIKLRPTVRALAY 192

Query:   120 KENFNLG--DSAPQ-DVQTSVGV----LTP-AGDQSSISSTEEPVMKTSKKIYDK-KFSE 170
             K+NF+LG  D+ P  +++T+  +     T  +G+    S    P   T++++    K  E
Sbjct:   193 KDNFDLGESDTKPDGELKTAKKIADRKFTDLSGNNVFKSDVSSPSSATAERLLSTAKLKE 252

Query:   171 LSGNDIF 177
             +SGNDIF
Sbjct:   253 ISGNDIF 259

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 54/78 (69%), Positives = 67/78 (85%)

Query:   157 MKTSKKIYDKKFSELSGNDIFKGDVP-PSSA--EKPLSVAKLREMSGSNIFADGKVESRD 213
             +KT+KKI D+KF++LSGN++FK DV  PSSA  E+ LS AKL+E+SG++IFAD K +SRD
Sbjct:   209 LKTAKKIADRKFTDLSGNNVFKSDVSSPSSATAERLLSTAKLKEISGNDIFADAKAQSRD 268

Query:   214 YLGGVRKPPGGESSIALV 231
             Y GGVRKPPGGESSIALV
Sbjct:   269 YFGGVRKPPGGESSIALV 286


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.305   0.126   0.340    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      231       231   0.00084  113 3  11 23  0.42    34
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  525 (56 KB)
  Total size of DFA:  136 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.19u 0.12s 27.31t   Elapsed:  00:00:01
  Total cpu time:  27.19u 0.12s 27.31t   Elapsed:  00:00:01
  Start:  Sat May 11 09:16:58 2013   End:  Sat May 11 09:16:59 2013

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