BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026875
         (231 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GVL|A Chain A, Crystal Structure Of The Gsuk Rck Domain
 pdb|4GVL|B Chain B, Crystal Structure Of The Gsuk Rck Domain
 pdb|4GVL|C Chain C, Crystal Structure Of The Gsuk Rck Domain
 pdb|4GVL|D Chain D, Crystal Structure Of The Gsuk Rck Domain
          Length = 462

 Score = 27.7 bits (60), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 173 GNDIFKGDVPPSSAEKPLSVAKLREMSGSNIFA 205
           G  +F+  +PP+ A K ++  +LR ++G +I A
Sbjct: 382 GMAVFRRPLPPAMAGKTIAETRLRPLTGCSIVA 414


>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
          Length = 510

 Score = 27.3 bits (59), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 143 AGDQSSISSTEEPVMKTSKKIYDKKFSELSGNDIFKGDVPPSSAEKPLSVA 193
           AG+ S I +  E V+  S  +  ++  +L  N+ FK  VPPS  + P +VA
Sbjct: 461 AGENSVIDNLPEEVVANSYGLPREQARQLKNNNPFKFFVPPSQ-QSPRAVA 510


>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
 pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
 pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
 pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
 pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
 pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
 pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
 pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
 pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
 pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
 pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
 pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
          Length = 565

 Score = 27.3 bits (59), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 173 GNDIFKGDVPPSSAEKPLSVAKLREMSGSNIFA 205
           G  +F+  +PP+ A K ++  +LR ++G +I A
Sbjct: 485 GMAVFRRPLPPAMAGKTIAETRLRPLTGCSIVA 517


>pdb|4GX5|A Chain A, Gsuk Channel
 pdb|4GX5|B Chain B, Gsuk Channel
 pdb|4GX5|C Chain C, Gsuk Channel
 pdb|4GX5|D Chain D, Gsuk Channel
          Length = 565

 Score = 27.3 bits (59), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 173 GNDIFKGDVPPSSAEKPLSVAKLREMSGSNIFA 205
           G  +F+  +PP+ A K ++  +LR ++G +I A
Sbjct: 485 GMAVFRRPLPPAMAGKTIAETRLRPLTGCSIVA 517


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.305    0.126    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,010,528
Number of Sequences: 62578
Number of extensions: 285549
Number of successful extensions: 427
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 20
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.9 bits)