Query 026875
Match_columns 231
No_of_seqs 88 out of 90
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 13:55:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13266 DUF4057: Protein of u 100.0 1.4E-97 3E-102 670.5 15.1 228 1-229 74-302 (302)
2 PF13266 DUF4057: Protein of u 99.9 1.6E-27 3.5E-32 216.2 5.9 121 1-149 165-301 (302)
3 PRK14463 ribosomal RNA large s 16.0 76 0.0016 30.0 1.2 29 195-227 319-348 (349)
4 PF07623 PEGSRP: Protein of un 11.7 99 0.0021 19.9 0.5 8 218-225 4-11 (27)
5 PHA01082 putative transcriptio 10.2 98 0.0021 26.4 0.1 17 165-181 12-28 (133)
6 COG4029 Uncharacterized protei 8.8 1.2E+02 0.0026 26.1 0.1 24 153-181 48-71 (142)
7 PF14493 HTH_40: Helix-turn-he 7.8 1.9E+02 0.0041 21.6 0.8 18 60-77 13-30 (91)
8 TIGR02569 TIGR02569_actnb cons 7.3 2E+02 0.0043 27.2 0.8 16 169-184 179-194 (272)
9 PF13993 YccJ: YccJ-like prote 5.9 3E+02 0.0064 21.1 1.0 15 59-73 1-15 (69)
10 PF02246 B1: Protein L b1 doma 5.8 1.3E+02 0.0028 22.9 -0.9 14 203-216 15-28 (69)
No 1
>PF13266 DUF4057: Protein of unknown function (DUF4057)
Probab=100.00 E-value=1.4e-97 Score=670.52 Aligned_cols=228 Identities=75% Similarity=1.100 Sum_probs=222.1
Q ss_pred CcccccccCcCCCCCCCCCCCCCCCCCCCCCCCccccccccCCccceecCCCCCCCCCCCCChhhhhhhhhccCCCCCch
Q 026875 1 MKEMTGSGIFAAGAENDESESGSANPTPNNKTGLRMYQQAIAGISHISFGEEDSISPKKPTTLPEVAKQRELSGTLESES 80 (231)
Q Consensus 1 ~KEmsGs~IFa~~~e~~~~e~~~~~~~~~~~t~~r~~q~~~~g~S~IsFgee~~vtpKK~ts~~evAKqrELSGn~isd~ 80 (231)
||||||||||++++++.+++.+.++ +.+++|++|||||+.+|+|||||++|++|+|||||+++|||||||||||+++++
T Consensus 74 ~KEmTGSGIF~~~~e~~~se~~san-~~~~rt~vr~yQq~~~giSqISF~~eesvsPKKpts~~EVAKQRELSGTlese~ 152 (302)
T PF13266_consen 74 MKEMTGSGIFSANGEDDASESGSAN-PTPNRTGVRMYQQAINGISQISFSEEESVSPKKPTSLPEVAKQRELSGTLESEA 152 (302)
T ss_pred ceecccccccccCCCCcccccccCC-CCccccccceecccccccceeeecCCCCcCCCCccchHHHHHHhhhcCccccch
Confidence 8999999999999999999988766 345799999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhhhhhhhhcCCCCcCCCCCCCCchHH-HHHHhhhccCCCCCCCCCccccccccCCCCCCCCcccCCccchhh
Q 026875 81 EAKLKKQISDAKSKELSGHDIFAPPPEILPRPAV-RALALKENFNLGDSAPQDVQTSVGVLTPAGDQSSISSTEEPVMKT 159 (231)
Q Consensus 81 ~~~~~KqlS~AK~KEmSGsdIFAdp~~~~pr~~~-~~~~~~~~~~~~~p~~r~~~ts~~~~~~ag~~s~~~f~e~~~~kt 159 (231)
|.+++||+|+||+||||||||||||++++||+++ +.||+++|+++++|.+|++||+|+|+|++|++|+|+|++|+|+||
T Consensus 153 D~k~kkq~S~AK~KELSGhdIFapp~~~~pr~~~~r~le~k~~~~~~e~~~~~~~ts~~~~n~a~~~s~~~~~~~~~~Kt 232 (302)
T PF13266_consen 153 DSKMKKQISNAKSKELSGHDIFAPPPEIKPRSLTARSLELKENKDRGEPAPRNVRTSVKVSNPAGGQSNIEFGEDSVVKT 232 (302)
T ss_pred hhHHHhhhhhhhhhhcccCcccCCCccCCCCcchhhhhhhcccccccCCCCCcccccccccCCcCcccccccccCcchhh
Confidence 9999999999999999999999999999999975 899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcccCCCcCCCCCCCCCCCCcchhhhhhhhcCCCcCCCCCcCccccCCCcccCCCCCCCcc
Q 026875 160 SKKIYDKKFSELSGNDIFKGDVPPSSAEKPLSVAKLREMSGSNIFADGKVESRDYLGGVRKPPGGESSIA 229 (231)
Q Consensus 160 ~kki~~~K~~eltGN~IFk~d~~~~s~eK~lS~AKlrEmsGsdIFaDgk~~~Rd~~ggvrkPPGGeSSIa 229 (231)
+||||+|||+||+||||||+|.|++++||+||+||||||+|+|||||||+++|||+|||||||||+||||
T Consensus 233 akki~~~K~aeltGN~IFk~d~p~~saek~lS~AKlrEmsGsdIFaDgk~~~rd~~gg~rkPPGG~SSIa 302 (302)
T PF13266_consen 233 AKKISNQKFAELTGNNIFKGDVPPASAEKPLSSAKLREMSGSDIFADGKAESRDYLGGVRKPPGGESSIA 302 (302)
T ss_pred hhhhhhhhhhhcccCcccCCCCCCCCcccchhhhhHhhcccccccccCCcccchhcCCccCCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF13266 DUF4057: Protein of unknown function (DUF4057)
Probab=99.94 E-value=1.6e-27 Score=216.23 Aligned_cols=121 Identities=34% Similarity=0.484 Sum_probs=102.3
Q ss_pred CcccccccCcCCCCCCCCCC----------CCCCC--CCCCCCCCccccccccCCccceecCCCCCC-CCCCCCChhhhh
Q 026875 1 MKEMTGSGIFAAGAENDESE----------SGSAN--PTPNNKTGLRMYQQAIAGISHISFGEEDSI-SPKKPTTLPEVA 67 (231)
Q Consensus 1 ~KEmsGs~IFa~~~e~~~~e----------~~~~~--~~~~~~t~~r~~q~~~~g~S~IsFgee~~v-tpKK~ts~~evA 67 (231)
+|||||||||++|+++.|+. +.+.+ .+++.++++++. +++++.|+|.|++|++| |+||++++
T Consensus 165 ~KELSGhdIFapp~~~~pr~~~~r~le~k~~~~~~e~~~~~~~ts~~~~-n~a~~~s~~~~~~~~~~Ktakki~~~---- 239 (302)
T PF13266_consen 165 SKELSGHDIFAPPPEIKPRSLTARSLELKENKDRGEPAPRNVRTSVKVS-NPAGGQSNIEFGEDSVVKTAKKISNQ---- 239 (302)
T ss_pred hhhcccCcccCCCccCCCCcchhhhhhhcccccccCCCCCccccccccc-CCcCcccccccccCcchhhhhhhhhh----
Confidence 59999999999999999995 21222 256789999999 89999999999999999 99999999
Q ss_pred hhhhccCCCC--Cc-hhHHhhhhhhhhhhhhhcCCCCcCCCCCCCCchHHHHHHhhhccCCCCCCCCCccccccccCCCC
Q 026875 68 KQRELSGTLE--SE-SEAKLKKQISDAKSKELSGHDIFAPPPEILPRPAVRALALKENFNLGDSAPQDVQTSVGVLTPAG 144 (231)
Q Consensus 68 KqrELSGn~i--sd-~~~~~~KqlS~AK~KEmSGsdIFAdp~~~~pr~~~~~~~~~~~~~~~~p~~r~~~ts~~~~~~ag 144 (231)
|++||+||+| .| ++.+++|+||.||||||+|||||||++.. . |.+.. .|.-|-|
T Consensus 240 K~aeltGN~IFk~d~p~~saek~lS~AKlrEmsGsdIFaDgk~~-~--------------------rd~~g--g~rkPPG 296 (302)
T PF13266_consen 240 KFAELTGNNIFKGDVPPASAEKPLSSAKLREMSGSDIFADGKAE-S--------------------RDYLG--GVRKPPG 296 (302)
T ss_pred hhhhcccCcccCCCCCCCCcccchhhhhHhhcccccccccCCcc-c--------------------chhcC--CccCCCC
Confidence 9999999999 55 56888999999999999999999998763 2 22322 4567888
Q ss_pred CCCCc
Q 026875 145 DQSSI 149 (231)
Q Consensus 145 ~~s~~ 149 (231)
|.|+|
T Consensus 297 G~SSI 301 (302)
T PF13266_consen 297 GESSI 301 (302)
T ss_pred CCCcC
Confidence 88876
No 3
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=16.00 E-value=76 Score=29.96 Aligned_cols=29 Identities=41% Similarity=0.644 Sum_probs=19.6
Q ss_pred hhhhcCCCcCCC-CCcCccccCCCcccCCCCCCC
Q 026875 195 LREMSGSNIFAD-GKVESRDYLGGVRKPPGGESS 227 (231)
Q Consensus 195 lrEmsGsdIFaD-gk~~~Rd~~ggvrkPPGGeSS 227 (231)
+|.=-|.||.|- |.... --+|-||||||-
T Consensus 319 vR~~~G~di~aaCGqL~~----~~~~~~~~~~~~ 348 (349)
T PRK14463 319 TRSSRGSDISAACGQLKG----KLDKAPPGGESC 348 (349)
T ss_pred EeCCCCcchhhccCcccc----cccCCCCCCCCC
Confidence 444568888875 44432 257999999983
No 4
>PF07623 PEGSRP: Protein of unknown function (DUF1584); InterPro: IPR011477 This sequence motif is highly conserved in several short hypothetical proteins from Rhodopirellula baltica. It is also associated with IPR011476 from INTERPRO in Q7UJJ9 from SWISSPROT.
Probab=11.68 E-value=99 Score=19.88 Aligned_cols=8 Identities=75% Similarity=1.244 Sum_probs=5.7
Q ss_pred cccCCCCC
Q 026875 218 VRKPPGGE 225 (231)
Q Consensus 218 vrkPPGGe 225 (231)
-|||||-+
T Consensus 4 ~RkppG~~ 11 (27)
T PF07623_consen 4 WRKPPGEE 11 (27)
T ss_pred cccCCCCC
Confidence 48899853
No 5
>PHA01082 putative transcription regulator
Probab=10.19 E-value=98 Score=26.38 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.3
Q ss_pred hhhhhcccCCCcCCCCC
Q 026875 165 DKKFSELSGNDIFKGDV 181 (231)
Q Consensus 165 ~~K~~eltGN~IFk~d~ 181 (231)
..++.|||+|.||-.-.
T Consensus 12 ~m~~~emtkNyiFRefe 28 (133)
T PHA01082 12 SMNRSEMTKNFVFREFE 28 (133)
T ss_pred hhhHhhhhcceehhhhc
Confidence 47899999999998654
No 6
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=8.82 E-value=1.2e+02 Score=26.09 Aligned_cols=24 Identities=46% Similarity=0.653 Sum_probs=18.8
Q ss_pred CccchhhhhhhhhhhhhcccCCCcCCCCC
Q 026875 153 EEPVMKTSKKIYDKKFSELSGNDIFKGDV 181 (231)
Q Consensus 153 e~~~~kt~kki~~~K~~eltGN~IFk~d~ 181 (231)
|+-|.|.+++| .+|-+|+||..|.
T Consensus 48 Ed~v~klveri-----R~~d~~~IF~KdR 71 (142)
T COG4029 48 EDEVRKLVERI-----RELDGNAIFSKDR 71 (142)
T ss_pred HHHHHHHHHHH-----HHhccCceeeccc
Confidence 36788888776 4688999998874
No 7
>PF14493 HTH_40: Helix-turn-helix domain
Probab=7.77 E-value=1.9e+02 Score=21.60 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.1
Q ss_pred CCChhhhhhhhhccCCCC
Q 026875 60 PTTLPEVAKQRELSGTLE 77 (231)
Q Consensus 60 ~ts~~evAKqrELSGn~i 77 (231)
=.|+.|||++|.|+=+.|
T Consensus 13 G~si~eIA~~R~L~~sTI 30 (91)
T PF14493_consen 13 GLSIEEIAKIRGLKESTI 30 (91)
T ss_pred CCCHHHHHHHcCCCHHHH
Confidence 468899999999987766
No 8
>TIGR02569 TIGR02569_actnb conserved hypothetical protein TIGR02569, Actinobacterial. This protein family is found, so far, only in Actinobacteria, including as least five species of Mycobacterium, three of Corynebacterium, and Nocardia farcinica, always in a single copy per genome. The function is unknown.
Probab=7.28 E-value=2e+02 Score=27.21 Aligned_cols=16 Identities=19% Similarity=0.706 Sum_probs=14.4
Q ss_pred hcccCCCcCCCCCCCC
Q 026875 169 SELSGNDIFKGDVPPS 184 (231)
Q Consensus 169 ~eltGN~IFk~d~~~~ 184 (231)
.||.||-||.|..||+
T Consensus 179 gDl~gt~lF~g~~~P~ 194 (272)
T TIGR02569 179 ADMYATTLYAGTQPPG 194 (272)
T ss_pred eecccceeecCCCCCc
Confidence 5899999999999885
No 9
>PF13993 YccJ: YccJ-like protein
Probab=5.93 E-value=3e+02 Score=21.11 Aligned_cols=15 Identities=40% Similarity=0.357 Sum_probs=11.9
Q ss_pred CCCChhhhhhhhhcc
Q 026875 59 KPTTLPEVAKQRELS 73 (231)
Q Consensus 59 K~ts~~evAKqrELS 73 (231)
|+|.+.|+|+-||-|
T Consensus 1 k~Hhi~eWA~~ReTS 15 (69)
T PF13993_consen 1 KAHHIGEWANVRETS 15 (69)
T ss_pred CCchhHHHHHHhcCC
Confidence 678888899888754
No 10
>PF02246 B1: Protein L b1 domain; InterPro: IPR003147 Protein L is a bacterial protein with immunoglobulin (Ig) light chain-binding properties. It contains a number of homologous b1 repeats towards the N terminus. These repeats have been found to be responsible for the interaction of protein L with Ig light chains [].; PDB: 1KH0_A 1K52_A 1JML_A 2PTL_A 1K50_B 1HZ6_C 1HZ5_B 1K53_B 2KAC_A 2JZP_A ....
Probab=5.81 E-value=1.3e+02 Score=22.87 Aligned_cols=14 Identities=43% Similarity=0.945 Sum_probs=0.0
Q ss_pred cCCCCCcCccccCC
Q 026875 203 IFADGKVESRDYLG 216 (231)
Q Consensus 203 IFaDgk~~~Rd~~g 216 (231)
||+||+.+.-.+-|
T Consensus 15 ifadg~tqtaefkg 28 (69)
T PF02246_consen 15 IFADGSTQTAEFKG 28 (69)
T ss_dssp EETTSEEEEEEEEC
T ss_pred EEccCcEEEEEeeC
Done!