Query 026875
Match_columns 231
No_of_seqs 88 out of 90
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 00:21:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rfp_A Putative NTP pyrophosph 13.3 1.1E+02 0.0036 25.8 2.5 22 202-223 130-151 (171)
2 1xf5_L Protein L, monoclonal a 10.4 37 0.0013 25.2 -1.1 17 200-216 23-39 (80)
3 3nl9_A Putative NTP pyrophosph 10.1 1.5E+02 0.0053 24.3 2.5 21 203-223 131-151 (171)
4 1hz6_A Protein L; four strande 8.9 51 0.0018 24.0 -0.8 17 200-216 16-32 (72)
5 2ptl_A Protein L; binding prot 8.8 57 0.002 24.1 -0.5 18 199-216 21-38 (78)
6 3d8l_A ORF12; lactococcal phag 8.7 63 0.0022 24.3 -0.3 18 86-103 3-21 (91)
7 2b19_A Neuropeptide K, NPK; he 8.5 1.1E+02 0.0039 19.6 0.8 20 79-100 1-20 (36)
8 2jqt_A H-NS/STPA-binding prote 6.0 1.6E+02 0.0054 21.7 0.7 18 194-211 46-64 (71)
9 2k0q_A Putative uncharacterize 6.0 1.1E+02 0.0038 22.7 -0.1 23 201-223 18-41 (74)
10 2ahq_A Sigma-54, RNA polymeras 4.9 2.5E+02 0.0086 20.3 1.2 13 187-199 35-47 (76)
No 1
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=13.30 E-value=1.1e+02 Score=25.81 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.1
Q ss_pred CcCCCCCcCccccCCCcccCCC
Q 026875 202 NIFADGKVESRDYLGGVRKPPG 223 (231)
Q Consensus 202 dIFaDgk~~~Rd~~ggvrkPPG 223 (231)
-+|.|||+-.|..-|=|-||||
T Consensus 130 Kl~~dGkp~~r~~dgKvlK~~~ 151 (171)
T 2rfp_A 130 KLGPDGQPIFRESDQKVMKPDG 151 (171)
T ss_dssp TCCTTSSCCBCTTTCCBCCCTT
T ss_pred hcCCCCCeeecCCCCceeCCCC
Confidence 4789999999987888999997
No 2
>1xf5_L Protein L, monoclonal antibody 19D9D6 light chain; crystal packing, FAB, peptide complex, immune SYS; 2.60A {Finegoldia magna} PDB: 1xct_L 1xcq_L
Probab=10.37 E-value=37 Score=25.22 Aligned_cols=17 Identities=41% Similarity=0.794 Sum_probs=13.0
Q ss_pred CCCcCCCCCcCccccCC
Q 026875 200 GSNIFADGKVESRDYLG 216 (231)
Q Consensus 200 GsdIFaDgk~~~Rd~~g 216 (231)
-+-||||||-+.-.+-|
T Consensus 23 ~nli~adgktqtaefkg 39 (80)
T 1xf5_L 23 VNLIFADGKIQTAEFKG 39 (80)
T ss_dssp EEEEETTSCEEEEEEEE
T ss_pred EEEEEecCceEeeeecC
Confidence 46799999988766653
No 3
>3nl9_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.78A {Exiguobacterium sibiricum 255-15}
Probab=10.09 E-value=1.5e+02 Score=24.30 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=17.5
Q ss_pred cCCCCCcCccccCCCcccCCC
Q 026875 203 IFADGKVESRDYLGGVRKPPG 223 (231)
Q Consensus 203 IFaDgk~~~Rd~~ggvrkPPG 223 (231)
+|.|||+-.|+.=|=|=|||+
T Consensus 131 l~~dgk~i~~~~dgKvlK~~~ 151 (171)
T 3nl9_A 131 LGPDGQPIFRESDQKVMKPDG 151 (171)
T ss_dssp CCTTSSCCBCTTTTCBCCCTT
T ss_pred cCCCCCeeeCCCCCcccCCCC
Confidence 478999988877788999987
No 4
>1hz6_A Protein L; four stranded beta-sheet with central alpha helix, binds KAP chain of immunoglobulins, protein binding; 1.70A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1hz5_A 1k53_A 1k51_A 1k52_A 1jml_A 1k50_A 2jzp_A 2kac_A 1kh0_A 1ymh_E 1mhh_E* 1hez_E 1ynt_E
Probab=8.86 E-value=51 Score=24.03 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=12.8
Q ss_pred CCCcCCCCCcCccccCC
Q 026875 200 GSNIFADGKVESRDYLG 216 (231)
Q Consensus 200 GsdIFaDgk~~~Rd~~g 216 (231)
-+-|||||+-+.-++-|
T Consensus 16 anlifadg~tqtaefkg 32 (72)
T 1hz6_A 16 ANLIFANGSTQTAEFKG 32 (72)
T ss_dssp EEEECTTSCEEEEEEEE
T ss_pred EEEEEecCceeeeeeee
Confidence 35699999988766654
No 5
>2ptl_A Protein L; binding protein(immunoglobulin L chain); NMR {Finegoldia magna} SCOP: d.15.7.1
Probab=8.84 E-value=57 Score=24.10 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=13.6
Q ss_pred cCCCcCCCCCcCccccCC
Q 026875 199 SGSNIFADGKVESRDYLG 216 (231)
Q Consensus 199 sGsdIFaDgk~~~Rd~~g 216 (231)
--+-|||||+-+.-.+-|
T Consensus 21 kanli~adg~tqtaefkg 38 (78)
T 2ptl_A 21 KANLIFANGSTQTAEFKG 38 (78)
T ss_dssp EEEEECSSSCCEEEEEEE
T ss_pred EEEEEEccCceeeeeecC
Confidence 346799999988766654
No 6
>3d8l_A ORF12; lactococcal phage P2, viral protein; 2.90A {Lactococcus phage SK1}
Probab=8.70 E-value=63 Score=24.28 Aligned_cols=18 Identities=50% Similarity=0.754 Sum_probs=14.5
Q ss_pred hhhhhh-hhhhhcCCCCcC
Q 026875 86 KQISDA-KSKELSGHDIFA 103 (231)
Q Consensus 86 KqlS~A-K~KEmSGsdIFA 103 (231)
||||.| |.|-+.|.|+|-
T Consensus 3 kqlstarkfkmitgkdlfq 21 (91)
T 3d8l_A 3 KQLSTARKFKMITGKDLFQ 21 (91)
T ss_dssp CCCCHHHHHHHHHSSCHHH
T ss_pred chhhhhhhhhhhccHHHHH
Confidence 677766 788899999994
No 7
>2b19_A Neuropeptide K, NPK; helix, 3 10 helix, lipid induced conformation, DPC micelles; NMR {Synthetic}
Probab=8.51 E-value=1.1e+02 Score=19.63 Aligned_cols=20 Identities=35% Similarity=0.616 Sum_probs=14.2
Q ss_pred chhHHhhhhhhhhhhhhhcCCC
Q 026875 79 ESEAKLKKQISDAKSKELSGHD 100 (231)
Q Consensus 79 d~~~~~~KqlS~AK~KEmSGsd 100 (231)
|+|++.+||+ |-+|.|-||.
T Consensus 1 dadssiekqv--allkalyghg 20 (36)
T 2b19_A 1 DADSSIEKQV--ALLKALYGHG 20 (36)
T ss_dssp CGGGGGGGGH--HHHHHHHGGG
T ss_pred CcchhHHHHH--HHHHHHhccC
Confidence 4678888886 5567777763
No 8
>2jqt_A H-NS/STPA-binding protein 2; CNU, YDGT, replication origin associated, ORIC, protein binding; NMR {Escherichia coli}
Probab=6.04 E-value=1.6e+02 Score=21.72 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=8.7
Q ss_pred hhhhhc-CCCcCCCCCcCc
Q 026875 194 KLREMS-GSNIFADGKVES 211 (231)
Q Consensus 194 KlrEms-GsdIFaDgk~~~ 211 (231)
.+.|+. |+-+|.+||.+.
T Consensus 46 RrAEl~~~gkLyD~~kVP~ 64 (71)
T 2jqt_A 46 RRAELVSGGRLFDLGQVPK 64 (71)
T ss_dssp HHHHHHTTCCCC-------
T ss_pred HHHHHhcCCcccccccCCH
Confidence 677877 788888888763
No 9
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=6.00 E-value=1.1e+02 Score=22.71 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=18.8
Q ss_pred CCcCCCCCcCccccCCC-cccCCC
Q 026875 201 SNIFADGKVESRDYLGG-VRKPPG 223 (231)
Q Consensus 201 sdIFaDgk~~~Rd~~gg-vrkPPG 223 (231)
--||-|||-.--|-+|. +|-+||
T Consensus 18 vyiFKDGKMamEdk~Gra~~m~~G 41 (74)
T 2k0q_A 18 VHVFKDGKMGMENKFGKSMNMPEG 41 (74)
T ss_dssp EEEETTSCEEEECTTSCEECCCBT
T ss_pred EEEEcCCceehhhhcCceEEcCCC
Confidence 46999999998898985 677776
No 10
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=4.90 E-value=2.5e+02 Score=20.30 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=11.0
Q ss_pred CCcchhhhhhhhc
Q 026875 187 EKPLSVAKLREMS 199 (231)
Q Consensus 187 eK~lS~AKlrEms 199 (231)
.+|||+.+|.+|-
T Consensus 35 ~kPlSD~~I~~~L 47 (76)
T 2ahq_A 35 RKPYSDQEIANIL 47 (76)
T ss_dssp SSCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 7999998888775
Done!