Query 026877
Match_columns 231
No_of_seqs 195 out of 1415
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 13:58:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3760 Uncharacterized conser 100.0 6.1E-37 1.3E-41 245.9 14.4 164 1-166 1-164 (164)
2 cd04335 PrdX_deacylase This CD 100.0 5.4E-35 1.2E-39 239.5 18.3 155 6-162 2-156 (156)
3 cd04336 YeaK YeaK is an unchar 100.0 4.3E-31 9.3E-36 215.2 18.0 149 6-165 2-153 (153)
4 TIGR00011 YbaK_EbsC ybaK/ebsC 100.0 3.1E-31 6.6E-36 216.4 16.8 148 7-165 2-152 (152)
5 PRK10670 hypothetical protein; 100.0 2.8E-31 6.1E-36 219.2 16.5 149 7-166 3-157 (159)
6 cd00002 YbaK_deacylase This CD 100.0 9.4E-30 2E-34 207.7 16.4 148 6-164 2-152 (152)
7 cd04333 ProX_deacylase This CD 100.0 3.8E-29 8.3E-34 203.2 17.7 140 6-153 2-142 (148)
8 PF04073 tRNA_edit: Aminoacyl- 100.0 2.8E-28 6.1E-33 191.9 14.8 122 24-151 1-123 (123)
9 COG2606 EbsC Uncharacterized c 99.9 3.2E-26 6.9E-31 188.4 15.2 141 8-154 4-147 (155)
10 cd04332 YbaK_like YbaK-like. 99.9 1.4E-25 3E-30 177.9 14.7 130 18-153 1-131 (136)
11 cd04939 PA2301 PA2301 is an un 99.9 1E-24 2.2E-29 176.5 14.1 128 21-154 4-136 (139)
12 cd04334 ProRS-INS INS is an am 99.9 2.7E-23 6E-28 170.9 12.9 118 17-141 25-143 (160)
13 PRK09194 prolyl-tRNA synthetas 99.7 7.7E-17 1.7E-21 156.5 13.7 114 21-141 252-365 (565)
14 TIGR00409 proS_fam_II prolyl-t 99.3 1.4E-11 3.1E-16 120.0 11.0 118 19-141 251-370 (568)
15 PRK09570 rpoH DNA-directed RNA 67.4 4.5 9.8E-05 29.8 2.2 44 3-48 18-61 (79)
16 PF01191 RNA_pol_Rpb5_C: RNA p 56.2 5 0.00011 29.1 0.7 44 3-48 15-58 (74)
17 KOG3857 Alcohol dehydrogenase, 51.8 64 0.0014 30.6 7.2 83 5-109 87-174 (465)
18 cd03028 GRX_PICOT_like Glutare 49.3 25 0.00055 25.6 3.6 47 121-167 2-48 (90)
19 COG1393 ArsC Arsenate reductas 43.8 47 0.001 25.9 4.5 33 5-37 14-47 (117)
20 cd03035 ArsC_Yffb Arsenate Red 42.3 54 0.0012 24.8 4.5 34 5-38 12-46 (105)
21 cd02977 ArsC_family Arsenate R 42.0 49 0.0011 24.6 4.3 34 5-38 12-46 (105)
22 TIGR02190 GlrX-dom Glutaredoxi 41.4 63 0.0014 22.7 4.6 22 5-26 21-42 (79)
23 cd03033 ArsC_15kD Arsenate Red 39.7 58 0.0012 25.1 4.4 33 5-37 13-46 (113)
24 TIGR02194 GlrX_NrdH Glutaredox 39.3 59 0.0013 22.3 4.1 21 5-25 12-32 (72)
25 TIGR01616 nitro_assoc nitrogen 38.6 64 0.0014 25.5 4.6 34 5-38 14-48 (126)
26 cd03032 ArsC_Spx Arsenate Redu 36.9 68 0.0015 24.4 4.4 33 5-37 13-46 (115)
27 PLN03111 DNA-directed RNA poly 36.7 30 0.00065 30.0 2.5 44 3-48 147-190 (206)
28 PRK14039 ADP-dependent glucoki 36.4 51 0.0011 31.9 4.3 70 1-74 282-351 (453)
29 cd03029 GRX_hybridPRX5 Glutare 36.3 97 0.0021 21.0 4.8 22 5-26 14-35 (72)
30 PRK10853 putative reductase; P 35.9 68 0.0015 24.9 4.3 33 5-37 13-46 (118)
31 PRK10329 glutaredoxin-like pro 35.8 43 0.00093 24.1 2.9 22 5-26 14-35 (81)
32 cd03034 ArsC_ArsC Arsenate Red 35.3 82 0.0018 24.0 4.6 33 5-37 12-45 (112)
33 PTZ00061 DNA-directed RNA poly 35.0 32 0.00069 29.8 2.4 44 3-48 146-189 (205)
34 PF08671 SinI: Anti-repressor 34.3 35 0.00075 20.5 1.8 14 1-14 15-28 (30)
35 cd03041 GST_N_2GST_N GST_N fam 33.6 1.3E+02 0.0029 20.7 5.2 22 5-26 13-34 (77)
36 COG2012 RPB5 DNA-directed RNA 33.4 47 0.001 24.5 2.7 44 3-48 21-64 (80)
37 PRK10026 arsenate reductase; P 33.4 84 0.0018 25.4 4.5 33 5-37 15-48 (141)
38 cd03036 ArsC_like Arsenate Red 33.3 67 0.0015 24.4 3.8 33 5-37 12-45 (111)
39 cd03027 GRX_DEP Glutaredoxin ( 33.1 51 0.0011 22.6 2.9 21 5-25 14-34 (73)
40 TIGR02045 P_fruct_ADP ADP-spec 33.0 87 0.0019 30.3 5.2 75 1-79 280-357 (446)
41 TIGR00014 arsC arsenate reduct 32.9 96 0.0021 23.7 4.7 33 5-37 12-45 (114)
42 cd03030 GRX_SH3BGR Glutaredoxi 32.9 49 0.0011 24.7 2.9 20 6-25 20-39 (92)
43 PF15516 BpuSI_N: BpuSI N-term 32.9 1.4E+02 0.0031 24.4 5.7 43 5-61 16-61 (159)
44 PF12949 HeH: HeH/LEM domain; 32.9 21 0.00046 22.1 0.7 17 3-19 4-20 (35)
45 PRK13344 spxA transcriptional 32.0 95 0.0021 24.6 4.6 33 5-37 13-46 (132)
46 PF03960 ArsC: ArsC family; I 31.8 86 0.0019 23.6 4.2 32 5-36 9-41 (110)
47 PF00462 Glutaredoxin: Glutare 31.6 48 0.001 21.7 2.5 22 6-27 13-34 (60)
48 COG0695 GrxC Glutaredoxin and 30.9 1.4E+02 0.0031 21.2 5.0 44 6-51 15-60 (80)
49 cd03418 GRX_GRXb_1_3_like Glut 30.9 1.3E+02 0.0028 20.2 4.7 22 5-26 13-34 (75)
50 PRK12559 transcriptional regul 30.8 98 0.0021 24.4 4.5 34 5-38 13-47 (131)
51 PRK05943 50S ribosomal protein 29.2 1.5E+02 0.0032 22.0 5.0 39 128-166 27-65 (94)
52 PF04908 SH3BGR: SH3-binding, 29.2 60 0.0013 24.7 2.8 21 6-26 21-41 (99)
53 PRK01655 spxA transcriptional 28.5 91 0.002 24.5 3.9 33 5-37 13-46 (131)
54 cd03045 GST_N_Delta_Epsilon GS 28.2 87 0.0019 21.0 3.4 21 5-25 12-32 (74)
55 PF13986 DUF4224: Domain of un 28.2 42 0.00092 22.0 1.6 15 86-100 2-16 (47)
56 PF03793 PASTA: PASTA domain; 28.1 78 0.0017 21.0 3.0 22 2-23 8-29 (63)
57 TIGR01617 arsC_related transcr 27.4 1E+02 0.0022 23.5 3.9 33 5-37 12-45 (117)
58 COG2875 CobM Precorrin-4 methy 27.2 98 0.0021 27.6 4.2 42 9-52 96-139 (254)
59 PRK03979 ADP-specific phosphof 26.5 1.1E+02 0.0024 29.7 4.8 74 1-78 294-370 (463)
60 cd00495 Ribosomal_L25_TL5_CTC 26.5 1.8E+02 0.004 21.2 5.1 29 128-156 26-54 (91)
61 PF04908 SH3BGR: SH3-binding, 26.2 40 0.00087 25.7 1.4 39 129-167 4-42 (99)
62 PF05157 T2SE_Nter: Type II se 25.9 1.1E+02 0.0024 22.1 3.8 51 46-96 49-99 (109)
63 COG1163 DRG Predicted GTPase [ 24.9 4.8E+02 0.01 24.6 8.4 72 3-75 199-282 (365)
64 COG0041 PurE Phosphoribosylcar 24.2 1.1E+02 0.0023 25.6 3.6 45 6-50 19-63 (162)
65 PRK10638 glutaredoxin 3; Provi 23.7 88 0.0019 22.0 2.8 22 5-26 15-36 (83)
66 TIGR00365 monothiol glutaredox 23.5 87 0.0019 23.2 2.8 45 123-167 8-52 (97)
67 cd03052 GST_N_GDAP1 GST_N fami 23.0 1.3E+02 0.0028 20.7 3.5 45 5-49 12-56 (73)
68 PF04577 DUF563: Protein of un 22.6 4E+02 0.0086 21.5 7.0 72 4-80 120-199 (206)
69 PF10281 Ish1: Putative stress 22.3 83 0.0018 19.3 2.1 29 4-36 5-33 (38)
70 TIGR02189 GlrX-like_plant Glut 20.8 2.1E+02 0.0046 21.2 4.5 47 5-51 21-68 (99)
71 cd03051 GST_N_GTT2_like GST_N 20.5 1.3E+02 0.0029 19.8 3.1 21 5-25 12-32 (74)
72 PF04405 ScdA_N: Domain of Unk 20.4 36 0.00078 23.2 0.2 36 7-45 14-49 (56)
73 cd00570 GST_N_family Glutathio 20.3 2.3E+02 0.005 17.6 4.2 22 5-26 12-33 (71)
No 1
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.1e-37 Score=245.89 Aligned_cols=164 Identities=38% Similarity=0.634 Sum_probs=160.3
Q ss_pred CCCCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCC
Q 026877 1 MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLG 80 (231)
Q Consensus 1 m~~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~k 80 (231)
|.++.+++.++|+++||+++.++|||+.|++|...+.+..+++.+||||+++||++|||+.+.++..+|++.+.+.+|.+
T Consensus 1 ~~kt~~el~~lL~eLgI~~~tveHppv~tveEs~~~~~eipgghtKnLfLkdkK~q~~lv~~~e~~~vDLk~ih~~IG~~ 80 (164)
T COG3760 1 MMKTEAELFALLDELGIDHTTVEHPPVFTVEESQALRDEIPGGHTKNLFLKDKKDQFFLVTVDEDAVVDLKSIHETIGAA 80 (164)
T ss_pred CCCCHHHHHHHHHHhCCCcccccCCCceehHHHHHHHhhcCCCccceeEeecCCCCEEEEEecccceecHHHHHHHhcee
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCE
Q 026877 81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 160 (231)
Q Consensus 81 r~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~ 160 (231)
+++|+++|.+.+++|+.+|+|++||+.||.+++|++|+|+.+++.+.|.|||.+|+.|.+|..+||.+||+++||+|.
T Consensus 81 --RlsFg~~E~l~E~LGv~pG~VT~Fglindt~~rv~ivlD~~l~~~~~infHPl~N~aTt~ia~~dl~~fL~atGhep~ 158 (164)
T COG3760 81 --RLSFGSPERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMDDDLINFHPLSNTATTSIASADLIRFLEATGHEPR 158 (164)
T ss_pred --eeecCCHHHHHHHhCCCcCceeEeeeecCccceEEEEEhHhhhhccccccccCCCccceeehHHHHHHHHHHcCCCce
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccC
Q 026877 161 YVDLEA 166 (231)
Q Consensus 161 ~vd~~~ 166 (231)
++|+++
T Consensus 159 il~~~~ 164 (164)
T COG3760 159 ILDVSA 164 (164)
T ss_pred eeeccC
Confidence 999975
No 2
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=100.00 E-value=5.4e-35 Score=239.47 Aligned_cols=155 Identities=49% Similarity=0.778 Sum_probs=148.0
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcce
Q 026877 6 DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLR 85 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr 85 (231)
++++++|+++||.|+.++||++.|+++++++++++.++++|||++++++++++++++|+|+++|++++++.+|.+ +++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~~~~~~~~Ktlv~~~~~~~~vlv~~~gd~~vn~~kl~~~lg~~--~l~ 79 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPVFTVEEADEVLGELPGAHTKNLFLKDKKGRLYLVTALHDKKVDLKALSKQLGAS--RLS 79 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCcCCHHHHHHhhccCCCceEEEEEEEcCCCCEEEEEEcCCcccCHHHHHHHhCCC--Ccc
Confidence 679999999999999999999999999999999999999999999987668999999999999999999999986 599
Q ss_pred eCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEE
Q 026877 86 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162 (231)
Q Consensus 86 ~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~v 162 (231)
||++|++.++||+.+|+|+|||+.++..+++++|+|+++...+.+|||+|+++.++.|+++||.++++++|+.+.++
T Consensus 80 ~a~~ee~~~~~g~~~G~v~P~gl~~~~~~~v~i~iD~~l~~~~~v~~~~G~~~~~~~i~~~dl~~~~~~~~~~~~~~ 156 (156)
T cd04335 80 FASEERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDLLEEERVGFHPLTNTATVGISTEDLLKFLEATGHEPTVV 156 (156)
T ss_pred cCCHHHHHHHHCCCCceeCcceeccCCCCceEEEEChHHhcCCeEEEeCCCCceEEEEcHHHHHHHHHHcCCCceEC
Confidence 99999999999999999999999877677899999999999999999999999999999999999999999998774
No 3
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=99.98 E-value=4.3e-31 Score=215.22 Aligned_cols=149 Identities=26% Similarity=0.337 Sum_probs=139.6
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCC--cEEEEEEcCCCccCHHHHHHHhCCCCCc
Q 026877 6 DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLGKGG 83 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~--~~vLVvv~gd~~vd~kkL~k~lG~kr~~ 83 (231)
++++++|+++||+|+.++|++..|++++++.+|+.+++++|+++|+++++ +++++++|+++++|++++++.+|.+ +
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll~~~~~~~~~~vlvv~~~~~~v~~~kl~~~~g~~--~ 79 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALLCKVKDGSRRFVLAVLPADKKLDLKAVAAAVGGK--K 79 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHHHHHHhCCCcccceEEEEEEecCCCceEEEEEEeCccccCHHHHHHHhCCC--c
Confidence 57999999999999999999999999999999999999999999999765 7999999999999999999999975 5
Q ss_pred ceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccC-CCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEE
Q 026877 84 LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA-QERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162 (231)
Q Consensus 84 lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~-~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~v 162 (231)
++||+++++.+++|+.+|+++|||+.+ ++++|+|+++.+ .+.||+|+|+++.++.|+++||.+++. +.++
T Consensus 80 l~~a~~~~l~~~~g~~~G~v~P~gl~~----~v~~~iD~~l~~~~~~v~~~~G~~~~~l~i~~~dl~~~~~-----~~~~ 150 (153)
T cd04336 80 ADLASPEEAEELTGCVIGAVPPFSFDP----KLKLIADPSLLDRGDEIAFNAGRLDASVVLDTADYLRIAR-----PLVL 150 (153)
T ss_pred cccCCHHHHHHHhCCccccCCCCCCCC----CceEEEChHHhccCCEEEEcCCCCCcEEEECHHHHHHHhC-----CEEe
Confidence 999999999999999999999999975 799999999999 889999999999999999999999997 4566
Q ss_pred Ecc
Q 026877 163 DLE 165 (231)
Q Consensus 163 d~~ 165 (231)
+|+
T Consensus 151 ~~~ 153 (153)
T cd04336 151 QFT 153 (153)
T ss_pred ccC
Confidence 653
No 4
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=99.98 E-value=3.1e-31 Score=216.38 Aligned_cols=148 Identities=19% Similarity=0.242 Sum_probs=138.2
Q ss_pred HHHHHHHhCCCCeEEEEcCCC---CCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCc
Q 026877 7 QLLARLKDLQIEFSQYEHPAV---MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG 83 (231)
Q Consensus 7 ~v~~~L~~~~I~~~~~~h~~~---~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~ 83 (231)
.+.++|+++||+|++++|++. .|++++++++|+++++++|+++|+.++++++++++|+|+++|++++++++|.+ +
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~~~~t~~e~a~~~g~~~~~~~Ktlv~~~~~~~~~lv~~~gd~~ld~~kl~~~lg~~--~ 79 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDPDHLDGESAAEKLGVDPHRVFKTLVAEGDKKGPVVAVIPGDEELDLKKLAKASGGK--K 79 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCcccHHHHHHHhCCCHHHeEEEEEEEcCCCcEEEEEEECCceeCHHHHHHHhCCC--C
Confidence 578999999999999999875 48899999999999999999999987668999999999999999999999975 5
Q ss_pred ceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEE
Q 026877 84 LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVD 163 (231)
Q Consensus 84 lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd 163 (231)
++||+++++.+++|+.+|+|+|||+.. ++++|+|+++.+.+.+|+|+|+++.++.|+++||.++++ +.|+|
T Consensus 80 ~~~a~~ee~~~~~g~~~G~v~P~g~~~----~~~vivD~~l~~~~~~~~~~g~~~~~~~i~~~dl~~~~~-----~~~~~ 150 (152)
T TIGR00011 80 AEMADPKDAEKVTGYIRGGISPIGQKK----KFPTYIDESAKQLETIYVSGGKRGLQIELAPDDLIRLLD-----GTFAD 150 (152)
T ss_pred cccCCHHHHHHhcCCcccccCCCCcCC----CccEEEehHHhcCCEEEEecCCCCcEEEECHHHHHHHhC-----CEEEe
Confidence 999999999999999999999999875 799999999999999999999999999999999999997 67887
Q ss_pred cc
Q 026877 164 LE 165 (231)
Q Consensus 164 ~~ 165 (231)
++
T Consensus 151 i~ 152 (152)
T TIGR00011 151 IA 152 (152)
T ss_pred cC
Confidence 75
No 5
>PRK10670 hypothetical protein; Provisional
Probab=99.97 E-value=2.8e-31 Score=219.23 Aligned_cols=149 Identities=17% Similarity=0.281 Sum_probs=137.4
Q ss_pred HHHHHHHhCCCCeEE--EEcCCCCC--HHHHHHHhCCCCCceeEEEEEEecCC--cEEEEEEcCCCccCHHHHHHHhCCC
Q 026877 7 QLLARLKDLQIEFSQ--YEHPAVMT--VEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLG 80 (231)
Q Consensus 7 ~v~~~L~~~~I~~~~--~~h~~~~T--iee~a~~~g~~~~~ivKtLvlk~kk~--~~vLVvv~gd~~vd~kkL~k~lG~k 80 (231)
.+.++|++++|+|+. ++|++..| .+++|+++|+++.+++|||+++.+++ ++++++++||+++|++++++.+|.+
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~i~Ktlv~~~~~~~~~~vl~v~~gd~~ld~~kl~~~lg~~ 82 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGLNADQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAK 82 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCCCHHHeEEEEEEEecCCCceEEEEEEECCceeCHHHHHHHhCCC
Confidence 588999999999998 77987664 49999999999999999999987543 4999999999999999999999986
Q ss_pred CCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCE
Q 026877 81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 160 (231)
Q Consensus 81 r~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~ 160 (231)
+++||++|++.+++||.+|+|||||+.+ ++++|+|+++.+++.+|+++|.++.++.|+++||.++++ ..
T Consensus 83 --~~~~a~~eev~~~tG~~~G~v~P~Gl~~----~v~v~vD~~l~~~~~i~~~aG~~~~~~~i~~~dl~~l~~-----~~ 151 (159)
T PRK10670 83 --KVEMADPMVAQRSTGYLVGGISPLGQKK----RLPTVIDAPAQEFATIYVSGGKRGLDIELAAGDLAKLLD-----AK 151 (159)
T ss_pred --CcccCCHHHHHHhhCCccceECccCCCC----CCeEEEehHHhcCCEEEEcCCCCCcEEEECHHHHHHHhC-----CE
Confidence 5999999999999999999999999975 799999999999999999999999999999999999987 67
Q ss_pred EEEccC
Q 026877 161 YVDLEA 166 (231)
Q Consensus 161 ~vd~~~ 166 (231)
|+||+.
T Consensus 152 ~~di~~ 157 (159)
T PRK10670 152 FADIAR 157 (159)
T ss_pred EEEEEe
Confidence 999874
No 6
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=99.97 E-value=9.4e-30 Score=207.75 Aligned_cols=148 Identities=18% Similarity=0.257 Sum_probs=136.4
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC---CCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCC
Q 026877 6 DQLLARLKDLQIEFSQYEHPAV---MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG 82 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~~~---~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~ 82 (231)
+.++++|+++||.|+.++|+.. .|++++++.+|+++.+++|+++++.++++++++++|+|+++|++++++.+|.+
T Consensus 2 ~~~~~~L~~~~i~~~~~~h~~~~~~~t~~e~~~~~~~~~~~~~K~li~~~d~~~~vlv~~~gd~~ld~~kl~~~lg~~-- 79 (152)
T cd00002 2 TPAIRLLDKAKIPYELHEYEHDEDASDGLEAAEKLGLDPEQVFKTLVVEGDKKGLVVAVVPVDEELDLKKLAKALGAK-- 79 (152)
T ss_pred CHHHHHHHHcCCCeEEEeecCCCCcCCHHHHHHHhCCCHHHeEEEEEEEcCCCcEEEEEEECCceeCHHHHHHHhCCC--
Confidence 4689999999999999999743 59999999999999999999999997668999999999999999999999976
Q ss_pred cceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEE
Q 026877 83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162 (231)
Q Consensus 83 ~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~v 162 (231)
+++||+++++.+++|+.+|+|+|||+.+ ++++|+|.++.+.+.+|+|+|+++.++.|+++||.++++ ..|+
T Consensus 80 ~l~~a~~ee~~~~~g~~~G~v~P~~l~~----~v~~liD~~l~~~~~~~~~ag~~~~~l~i~~~~l~~~~~-----~~~~ 150 (152)
T cd00002 80 KVEMAPPKDAERLTGYIRGGISPLGQKK----RLPTVIDESALDLDTIYVSAGKRGLQIELAPQDLAKLTG-----AKFA 150 (152)
T ss_pred CcccCCHHHHHHhcCCcccccCccCcCC----CccEEEehHHhcCCEEEEeCCCCCcEEEECHHHHHHHhC-----CEEe
Confidence 5999999999999999999999999974 799999999999999999999999999999999999987 4566
Q ss_pred Ec
Q 026877 163 DL 164 (231)
Q Consensus 163 d~ 164 (231)
|+
T Consensus 151 ~~ 152 (152)
T cd00002 151 DI 152 (152)
T ss_pred cC
Confidence 53
No 7
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=99.97 E-value=3.8e-29 Score=203.18 Aligned_cols=140 Identities=21% Similarity=0.346 Sum_probs=133.5
Q ss_pred HHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcc
Q 026877 6 DQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~l 84 (231)
+++.++|++++|.|+.++|+ +..|++++++++|.++++++|++++++++ +++++++|+++++|++++++.+|. ++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~~t~~e~a~~~~~~~~~~~K~l~~~~~~-~~~~v~~~~~~~ld~~kl~~~lg~---~l 77 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPESTRTAALAAEALGCEPGQIAKSLVFRVDD-EPVLVVTSGDARVDNKKFKALFGE---KL 77 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCCcchHHHHHHHcCCChhHEEEEEEEEECC-cEEEEEEeCCcccCHHHHHHHhCC---Cc
Confidence 57999999999999999999 58999999999999999999999999965 699999999999999999999997 39
Q ss_pred eeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHH
Q 026877 85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 153 (231)
Q Consensus 85 r~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~ 153 (231)
+||+++++.+++||.+|+++|||+.. ++++|+|+++...+.+|+++|+++.++.|+++||.+++.
T Consensus 78 ~~a~~~~~~~~~g~~~G~v~P~gl~~----~v~v~vD~~l~~~~~i~~~~g~~~~~~~i~~~dl~~~~~ 142 (148)
T cd04333 78 KMADAEEVRELTGFAIGGVCPFGHPE----PLPVYLDESLKRFDEVWAAAGTPNAAFRLTPDELERLTG 142 (148)
T ss_pred eeCCHHHHHHHHCCCCCcCCCCCCCC----CCeEEEehhHhhCCeEEEcCCCCCcEEEECHHHHHHHhC
Confidence 99999999999999999999999975 799999999999999999999999999999999999997
No 8
>PF04073 tRNA_edit: Aminoacyl-tRNA editing domain; InterPro: IPR007214 This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligonucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA [].; PDB: 3MEM_A 2J3L_A 2J3M_A 1WDV_B 2Z0X_A 2Z0K_A 2CX5_C 1DBX_B 1DBU_A 1VJF_A ....
Probab=99.96 E-value=2.8e-28 Score=191.90 Aligned_cols=122 Identities=31% Similarity=0.478 Sum_probs=113.1
Q ss_pred cCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHHhCCCcccc
Q 026877 24 HPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSV 103 (231)
Q Consensus 24 h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~lG~~~G~V 103 (231)
||++.|++++++++|+++.+++||++|++++++|+++++++|+++|+++|++++|.+ +++||++|++.++||+.+|+|
T Consensus 1 h~~~~t~~~~a~~~~~~~~~~~Ktlv~~~~~~~~~lv~~~~d~~ld~~kl~~~~g~~--~l~~a~~e~~~~~~g~~~G~v 78 (123)
T PF04073_consen 1 HPPTRTIEDAAKALGVPPEQIVKTLVLKDKKGRPVLVVLPGDHRLDLKKLAKALGAR--RLRLASPEELEELTGYEPGGV 78 (123)
T ss_dssp ETTTSSHHHHHHHHTCSGGGEEEEEEEEETTTEEEEEEEETTSEB-HHHHHHHHT-S--SEEE-HHHHHHHHHSSTTTS-
T ss_pred CcCCCcHHHHHHHcCCCHHHEEEEEEEEECCCCEEEEEECCCCEecHHHHhcccccc--chhhccHHHhhhccCCCccee
Confidence 899999999999999999999999999997788999999999999999999999975 699999999999999999999
Q ss_pred ccccc-CCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHH
Q 026877 104 TPFAL-VNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKF 151 (231)
Q Consensus 104 sPfgl-~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kl 151 (231)
+|||+ .+ ++++|+|+++.+.+.+|+|+|+++.++.++.+||.+|
T Consensus 79 ~P~g~~~~----~~~vvvD~~l~~~~~v~~~~g~~~~~l~~~~~dl~~l 123 (123)
T PF04073_consen 79 SPFGLPPK----GVPVVVDESLLELDNVYFGAGEPGSHLEISNEDLRKL 123 (123)
T ss_dssp -SSGGGST----TEEEEEEGGGGGSSEEEEECSSTTEEEEEEHHHHHHH
T ss_pred cccccccC----ccEEEEEHHHcCCCcEEEeCCCCCeEEEEChHHhccC
Confidence 99999 65 8999999999999999999999999999999999986
No 9
>COG2606 EbsC Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=3.2e-26 Score=188.39 Aligned_cols=141 Identities=21% Similarity=0.295 Sum_probs=130.4
Q ss_pred HHHHHHhCCCCeEEE--Ec-CCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcc
Q 026877 8 LLARLKDLQIEFSQY--EH-PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84 (231)
Q Consensus 8 v~~~L~~~~I~~~~~--~h-~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~l 84 (231)
..+.|+.++|.|+.+ ++ +...|..++++.+|+++++++|||+++.++++++++|+|+++++|+++|++.+|.+ ++
T Consensus 4 a~~~l~~~~~~~~~~~~~~~~~~~~~~~aae~~g~~~~~i~KTLvl~~~~~~~~~~V~p~~~~Ldlkkla~~~G~k--k~ 81 (155)
T COG2606 4 AVRLLDKAKIAFEVHVYELDPSALTGAEAAEALGVDPAQVAKTLVLAVDKGGPALAVVPGDQRLDLKKLAKALGAK--KA 81 (155)
T ss_pred HHHHHHHhcCCCceeEEEecCCcccHHHHHHHhCCCHHHeeEEEEEEcCCCCEEEEEEeCcCccCHHHHHHHhCCc--cc
Confidence 567888899988773 33 45667999999999999999999999998788999999999999999999999987 59
Q ss_pred eeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHh
Q 026877 85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 154 (231)
Q Consensus 85 r~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~ 154 (231)
.|++++++++.|||..|+|+|||+.+ .+++|+|++++++++||+++|.++..|.|+++||.+++.+
T Consensus 82 ~ma~~~~v~~~TGy~vGGv~P~G~~~----~~p~~iD~s~~~~~~I~~~aG~rg~~v~lap~dl~~l~~~ 147 (155)
T COG2606 82 EMADPEEVQRLTGYVVGGVSPFGQKK----RLPTYIDESALRFDTIYVSAGKRGLLVELAPQDLAELLGA 147 (155)
T ss_pred ccCCHHHHHHHhCCcccCcCCCCcCC----CCCEEEehhhhcCCeEEecCCCcCceEEECHHHHHHhhcc
Confidence 99999999999999999999999986 8999999999999999999999999999999999999974
No 10
>cd04332 YbaK_like YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).
Probab=99.94 E-value=1.4e-25 Score=177.92 Aligned_cols=130 Identities=31% Similarity=0.476 Sum_probs=122.8
Q ss_pred CeEEEEcCCC-CCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHHh
Q 026877 18 EFSQYEHPAV-MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEIL 96 (231)
Q Consensus 18 ~~~~~~h~~~-~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~l 96 (231)
.|..+.|++. .|++++++.++.++++++|+++|++++++++++++|+|+++|+++|++.+|.+ +++||+++++.+++
T Consensus 1 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~K~l~l~~~~~~~v~v~~~~d~~~d~~~l~~~~g~~--~l~~a~~~~~~~~~ 78 (136)
T cd04332 1 EYLEYEHTPGAKTIEEAAEALGVPPGQIAKTLVLKDDKGGLVLVVVPGDHELDLKKLAKALGAK--KLRLASEEELEELT 78 (136)
T ss_pred CcEEEecCCCCCCHHHHHHHcCCCHHHeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHhCCC--CeeeCCHHHHHHHh
Confidence 4778889887 99999999999999999999999997657999999999999999999999985 59999999999999
Q ss_pred CCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHH
Q 026877 97 KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 153 (231)
Q Consensus 97 G~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~ 153 (231)
|+.+|+|+|||+.. ++++|+|+++.+.+.+++|+|+++.++.|+.+||.++++
T Consensus 79 g~~~G~v~P~~~~~----~v~~~iD~~l~~~~~~~~~~g~~~~~~~i~~~~l~~~~~ 131 (136)
T cd04332 79 GCEPGGVGPFGLKK----GVPVVVDESLLELEDVYVGAGERGADLHLSPADLLRLLG 131 (136)
T ss_pred CCCcCccCccccCC----CCcEEEehHHhhCCeEEEcCCCcCcEEEECHHHHHHHhc
Confidence 99999999999985 799999999999999999999999999999999999887
No 11
>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=99.92 E-value=1e-24 Score=176.54 Aligned_cols=128 Identities=19% Similarity=0.243 Sum_probs=114.0
Q ss_pred EEEcCC-CCCHHHHHHHhCCCCCceeEEEEEEecC---CcEEEEEEcCCCccCHHH-HHHHhCCCCCcceeCCHHHHHHH
Q 026877 21 QYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKK---HRFYIVSALADTKVDMKV-LSQRLGLGKGGLRMAPEETMLEI 95 (231)
Q Consensus 21 ~~~h~~-~~Tiee~a~~~g~~~~~ivKtLvlk~kk---~~~vLVvv~gd~~vd~kk-L~k~lG~kr~~lr~Aseeel~~~ 95 (231)
.|+|.+ .....++|+.+|+++++++|||+++.++ .+|+++++++|+++|+++ +++.+|.+ +++|+++++++++
T Consensus 4 ~y~~~~~~~~~~~~A~~lG~~~~~i~KTLv~~~~~~~~~~~~v~vv~gd~~ldlkk~~~~~~g~k--k~~ma~~~ev~~~ 81 (139)
T cd04939 4 VFAIDPELADTAAFCARYGFGLEDSANCVVVAGKRGGEERYAACVVLATTRADVNGVVKRRLGAR--KASFAPMETAVEL 81 (139)
T ss_pred EEecCCCcccHHHHHHHhCCCHHHeEEEEEEEeecCCCccEEEEEEECccccCHHHHHHHHhCCC--CcccCCHHHHHHh
Confidence 456654 4567777889999999999999998642 268999999999999875 77999976 4999999999999
Q ss_pred hCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHh
Q 026877 96 LKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 154 (231)
Q Consensus 96 lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~ 154 (231)
|||.+|+|||||+.. .+++|+|+++++++.||+++|+.+.++.|+++||.++..+
T Consensus 82 TGy~~GGvsP~G~~~----~~pv~iD~sl~~~~~v~~saG~~~~~~~l~p~~L~~~~~a 136 (139)
T cd04939 82 TGMEYGGITPVGLPA----GWPILVDSAVAERPAVVIGSGVRRSKLLLPGAALAELPGA 136 (139)
T ss_pred hCCCCccCCcCCcCC----CCCEEEehHHhcCCEEEECCCCCCcEEEECHHHHHHHhCC
Confidence 999999999999985 8999999999999999999999999999999999999864
No 12
>cd04334 ProRS-INS INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-celled parasites. ProRS catalyzes the attachment of proline to tRNA(Pro); proline is first activated by ATP, and then transferred to the acceptor end of tRNA(Pro). ProRS can inadvertently process noncognate amino acids such as alanine and cysteine, and to avoid such errors, in post-transfer editing, the INS domain deacylates mischarged Ala-tRNA(Pro), thus ensuring the fidelity of translation. Misacylated Cys-tRNA(Pro) is not edited by ProRS. In addition to the INS editing domain, the prokaryote-like ProRS protein contains catalytic and anticodon-binding domains which form a dimeric interface.
Probab=99.90 E-value=2.7e-23 Score=170.92 Aligned_cols=118 Identities=20% Similarity=0.295 Sum_probs=111.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecC-CcEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHH
Q 026877 17 IEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKK-HRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEI 95 (231)
Q Consensus 17 I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk-~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~ 95 (231)
..|+.++||++.|++++++.+|+...+++|+|+|++++ ++|+++++|+|+++|+++|++.+|.+ +++||++|++.++
T Consensus 25 ~~~~~v~hp~~~t~~~~a~~~~~~~~~~~K~l~~~~~~~~~~~l~~~~~d~~vd~~kl~~~~g~~--~l~~a~~eel~~~ 102 (160)
T cd04334 25 KELEKVATPGQKTIEELAEFLGVPPSQTVKTLLVKADGEEELVAVLLRGDHELNEVKLENLLGAA--PLELASEEEIEAA 102 (160)
T ss_pred cCCeEEcCcCCCCHHHHHHHhCcCHHHeEEEEEEEECCCCCEEEEEecCCchhCHHHHHHhcCCC--cceeCCHHHHHHh
Confidence 78999999999999999999999999999999999865 47999999999999999999999986 5999999999999
Q ss_pred hCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceE
Q 026877 96 LKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSI 141 (231)
Q Consensus 96 lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl 141 (231)
+|+.+|+|+|||+. ++++|+|+++...+.+++++|..+..+
T Consensus 103 ~g~~~G~v~P~gl~-----~v~~~iD~~l~~~~~~~~ga~~~~~~~ 143 (160)
T cd04334 103 TGAPPGFIGPVGLK-----KIPIIADRSVADLKNFVCGANEDDYHY 143 (160)
T ss_pred hCCCCCEECCcCCC-----CCeEEEehHHhcCCCEEEcCCCCCcEE
Confidence 99999999999997 599999999999999999999988766
No 13
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.71 E-value=7.7e-17 Score=156.49 Aligned_cols=114 Identities=21% Similarity=0.293 Sum_probs=105.7
Q ss_pred EEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHHhCCCc
Q 026877 21 QYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPL 100 (231)
Q Consensus 21 ~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~lG~~~ 100 (231)
.++||+..|++++++.+|+++++++|||++++++ +++++++|+|+++|+++|++.+|.+ +++||+++++.+.+|+.+
T Consensus 252 ~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~-~~~lvvvp~d~~vn~~kl~~~lg~~--~l~~a~~eel~~~~g~~~ 328 (565)
T PRK09194 252 KVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADG-ELVAVLVRGDHELNEVKLENLLGAA--PLELATEEEIRAALGAVP 328 (565)
T ss_pred eecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeCC-eEEEEEeecchhhhHHHHHhhcCCc--ccccCCHHHHHHhhCCCC
Confidence 4478889999999999999999999999999864 7999999999999999999999986 599999999999999999
Q ss_pred ccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceE
Q 026877 101 GSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSI 141 (231)
Q Consensus 101 G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl 141 (231)
|+++|||+.+ ++++|+|.++...+.+++++|..+..+
T Consensus 329 G~v~P~Gl~~----~v~viiD~sl~~~~~~~~gan~~g~h~ 365 (565)
T PRK09194 329 GFLGPVGLPK----DVPIIADRSVADMSNFVVGANEDDYHY 365 (565)
T ss_pred CccCcccCCC----CceEEEeccccccccccccCCCCCcee
Confidence 9999999986 799999999999999999988887666
No 14
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.29 E-value=1.4e-11 Score=119.95 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=103.8
Q ss_pred eEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCC--cEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHHh
Q 026877 19 FSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEIL 96 (231)
Q Consensus 19 ~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~--~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~l 96 (231)
.+.+++|.+.|+++++.++++++.+.+|+++++..++ +++++++|||++||+.|+++.+|.. ..+++|+++++...+
T Consensus 251 ~~~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~-~~~~~a~~~~~~~~~ 329 (568)
T TIGR00409 251 LDKVDTPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVA-QVLELATEEEIFQKI 329 (568)
T ss_pred ceeecCCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccC-cccccCCHHHHHHhh
Confidence 4678899999999999999999999999999987432 5999999999999999999999532 148999999999999
Q ss_pred CCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceE
Q 026877 97 KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSI 141 (231)
Q Consensus 97 G~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl 141 (231)
|..+|+++|+|+.. .+++++|.++.....+.++++..+.-+
T Consensus 330 g~~~g~~gpv~~~~----~~~i~~D~~~~~~~~~~~gan~~~~h~ 370 (568)
T TIGR00409 330 ASGPGSLGPVNING----GIPVLIDQTVALMSDFAAGANADDKHY 370 (568)
T ss_pred CCCCCccCcccccc----CceEEechhhhcccccccccCCCCcee
Confidence 99999999999874 689999999999998888888775433
No 15
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=67.45 E-value=4.5 Score=29.78 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEE
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNL 48 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtL 48 (231)
|+.++..++|++.+|..+ +-|.+...+-+++++|..+++++|-.
T Consensus 18 Ls~eE~~~lL~~y~i~~~--qLP~I~~~DPv~r~~g~k~GdVvkI~ 61 (79)
T PRK09570 18 LSEEEAKKLLKEYGIKPE--QLPKIKASDPVVKAIGAKPGDVIKIV 61 (79)
T ss_pred CCHHHHHHHHHHcCCCHH--HCCceeccChhhhhcCCCCCCEEEEE
Confidence 578999999999999543 35777788889999999999999954
No 16
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=56.22 E-value=5 Score=29.14 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEE
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNL 48 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtL 48 (231)
|+.++..++|++.+|.- ..-|.+...+-+++++|..+++++|-.
T Consensus 15 ls~eE~~~lL~~y~i~~--~qLP~I~~~DPv~r~~g~k~GdVvkI~ 58 (74)
T PF01191_consen 15 LSEEEKKELLKKYNIKP--EQLPKILSSDPVARYLGAKPGDVVKII 58 (74)
T ss_dssp E-HHHHHHHHHHTT--T--TCSSEEETTSHHHHHTT--TTSEEEEE
T ss_pred cCHHHHHHHHHHhCCCh--hhCCcccccChhhhhcCCCCCCEEEEE
Confidence 46789999999999943 345677788889999999999999965
No 17
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=51.75 E-value=64 Score=30.58 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCCCeEEEEc----CCCCCHHHHHHHhCCCCCceeEEEEEEecCCcE-EEEEEcCCCccCHHHHHHHhCC
Q 026877 5 KDQLLARLKDLQIEFSQYEH----PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRF-YIVSALADTKVDMKVLSQRLGL 79 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h----~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~-vLVvv~gd~~vd~kkL~k~lG~ 79 (231)
.+.+++.|++.||+|++|+- |...++.++.++. + ++++ .+|.+-|..-.|..|-.+++..
T Consensus 87 ~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefa-------------k--~~~fDs~vaiGGGSa~DtaKaaaL~As 151 (465)
T KOG3857|consen 87 VKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFA-------------K--KKNFDSFVAIGGGSAHDTAKAAALLAS 151 (465)
T ss_pred HHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHH-------------H--hcccceEEEEcCcchhhhHHHHHHhhc
Confidence 36789999999999999873 2345555655554 1 2222 3444677788888888877765
Q ss_pred CCCcceeCCHHHHHHHhCCCcccccccccC
Q 026877 80 GKGGLRMAPEETMLEILKVPLGSVTPFALV 109 (231)
Q Consensus 80 kr~~lr~Aseeel~~~lG~~~G~VsPfgl~ 109 (231)
. .+-++.++-|++.|-+-+...+
T Consensus 152 n-------~~~eflDyvg~pigk~~~~s~p 174 (465)
T KOG3857|consen 152 N-------GEGEFLDYVGPPIGKVKQSSKP 174 (465)
T ss_pred C-------CCccchhccCCccccccccccc
Confidence 3 1235556667777776665443
No 18
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=49.25 E-value=25 Score=25.57 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=38.5
Q ss_pred eccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEEccCC
Q 026877 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167 (231)
Q Consensus 121 D~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd~~~~ 167 (231)
++.+.+.+.+.|.-|..+..-+--.....++|++.|..+.++|+...
T Consensus 2 ~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~ 48 (90)
T cd03028 2 KKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED 48 (90)
T ss_pred hhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 44566778888888877777788888999999999999999998754
No 19
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=43.75 E-value=47 Score=25.92 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~ 37 (231)
...++++|+++||+|+.++. ..-.|-+++.+.+
T Consensus 14 ~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 14 CRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred HHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 46789999999999998765 2345667766654
No 20
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=42.26 E-value=54 Score=24.83 Aligned_cols=34 Identities=3% Similarity=0.089 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHhC
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYVG 38 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~g 38 (231)
..+..++|+++||+|+.++. ..-.|.+++.+.+.
T Consensus 12 crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 12 VKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred HHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 46789999999999999875 23457777766653
No 21
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=42.02 E-value=49 Score=24.56 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHhC
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYVG 38 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~g 38 (231)
..++.++|+++||+|+.++- ..-.+.+++.+.++
T Consensus 12 c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 12 SRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred HHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 46789999999999999875 34456677766654
No 22
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=41.40 E-value=63 Score=22.65 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCCeEEEEcCC
Q 026877 5 KDQLLARLKDLQIEFSQYEHPA 26 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~ 26 (231)
..++.++|+++||+|+.++-..
T Consensus 21 C~~ak~~L~~~gi~y~~idi~~ 42 (79)
T TIGR02190 21 CAKAKATLKEKGYDFEEIPLGN 42 (79)
T ss_pred HHHHHHHHHHcCCCcEEEECCC
Confidence 3689999999999999987543
No 23
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=39.70 E-value=58 Score=25.13 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~ 37 (231)
.....++|+++||+|+.++. ..-.|.+++...+
T Consensus 13 crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l 46 (113)
T cd03033 13 NARQKALLEAAGHEVEVRDLLTEPWTAETLRPFF 46 (113)
T ss_pred HHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHH
Confidence 46788999999999999875 2345667766654
No 24
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=39.35 E-value=59 Score=22.27 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCCeEEEEcC
Q 026877 5 KDQLLARLKDLQIEFSQYEHP 25 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~ 25 (231)
...++++|+++||+|+.++-.
T Consensus 12 C~~ak~~L~~~~i~~~~~di~ 32 (72)
T TIGR02194 12 CKMTKKALEEHGIAFEEINID 32 (72)
T ss_pred HHHHHHHHHHCCCceEEEECC
Confidence 468999999999999998754
No 25
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=38.61 E-value=64 Score=25.47 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHhC
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYVG 38 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~g 38 (231)
.....+.|+++||+|+.++. ..-.|.+++...+.
T Consensus 14 ~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 14 NARQKAALKASGHDVEVQDILKEPWHADTLRPYFG 48 (126)
T ss_pred HHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence 46789999999999999875 33457777766653
No 26
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=36.89 E-value=68 Score=24.45 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~ 37 (231)
..++.++|+++||+|+.++- ..-.|.+++.+.+
T Consensus 13 c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~ 46 (115)
T cd03032 13 CRKAKQWLEEHQIPFEERNLFKQPLTKEELKEIL 46 (115)
T ss_pred HHHHHHHHHHCCCceEEEecCCCcchHHHHHHHH
Confidence 46899999999999999875 3345556665554
No 27
>PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional
Probab=36.71 E-value=30 Score=29.99 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEE
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNL 48 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtL 48 (231)
++.++..++|++.+|. ...-|.+...+-+|+++|..+++++|-.
T Consensus 147 ls~eEk~~lL~~y~i~--~~qLPrI~~~DPvary~g~k~G~vvkI~ 190 (206)
T PLN03111 147 LTDEEKKTLLKRYTVK--ETQLPRIQVSDPIARYYGLKRGQVVKII 190 (206)
T ss_pred cCHHHHHHHHHHcCCC--HHHCCcccccChhhHhcCCCCCCEEEEE
Confidence 5688999999999985 3345778888889999999999999954
No 28
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=36.43 E-value=51 Score=31.90 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHH
Q 026877 1 MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLS 74 (231)
Q Consensus 1 m~~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~ 74 (231)
+||+++++..+++-+|...+.+-.-...++-+++..+-... -+..+.+... .|+|++...|..+..+.+.
T Consensus 282 lGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l~~~~--~le~l~vHT~--~y~l~i~~~~~~~~~~~~~ 351 (453)
T PRK14039 282 IGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQLASES--GLQRLIIHTR--EFVLCVSKPDVKMAKKKIE 351 (453)
T ss_pred ccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHHHHHHc--CCCEEEEEec--ceEEEEecCCCCccHHHHH
Confidence 58999999999999998664432222344444444331111 2455778763 6899999988887777773
No 29
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=36.25 E-value=97 Score=21.01 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCCeEEEEcCC
Q 026877 5 KDQLLARLKDLQIEFSQYEHPA 26 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~ 26 (231)
..++.++|+++||+|+.++-..
T Consensus 14 C~~ak~~L~~~~i~~~~~~v~~ 35 (72)
T cd03029 14 CARAKAALQENGISYEEIPLGK 35 (72)
T ss_pred HHHHHHHHHHcCCCcEEEECCC
Confidence 3678999999999999987654
No 30
>PRK10853 putative reductase; Provisional
Probab=35.91 E-value=68 Score=24.92 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~ 37 (231)
.....++|+++||+|+.++. ....|.+++.+.+
T Consensus 13 ~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l 46 (118)
T PRK10853 13 IKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI 46 (118)
T ss_pred HHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence 46789999999999999875 3345667766665
No 31
>PRK10329 glutaredoxin-like protein; Provisional
Probab=35.81 E-value=43 Score=24.05 Aligned_cols=22 Identities=5% Similarity=0.016 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCCeEEEEcCC
Q 026877 5 KDQLLARLKDLQIEFSQYEHPA 26 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~ 26 (231)
..+++++|+++||+|+.++-..
T Consensus 14 C~~ak~~L~~~gI~~~~idi~~ 35 (81)
T PRK10329 14 CHATKRAMESRGFDFEMINVDR 35 (81)
T ss_pred HHHHHHHHHHCCCceEEEECCC
Confidence 3679999999999999987543
No 32
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=35.28 E-value=82 Score=23.98 Aligned_cols=33 Identities=21% Similarity=0.111 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~ 37 (231)
..+..++|+++||+|+.++. ..-.|.+++...+
T Consensus 12 ~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l 45 (112)
T cd03034 12 SRNALALLEEAGIEPEIVEYLKTPPTAAELRELL 45 (112)
T ss_pred HHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence 46788999999999999875 3445777766655
No 33
>PTZ00061 DNA-directed RNA polymerase; Provisional
Probab=34.97 E-value=32 Score=29.80 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEE
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNL 48 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtL 48 (231)
++.++..++|++.++. ...-|.+...+-+|+++|..+++++|-.
T Consensus 146 Ls~eEk~~lL~~y~i~--~~qLPrI~~~DPvary~g~k~G~vvkI~ 189 (205)
T PTZ00061 146 LTDDEKLNLLQRYKVK--ESQLPRIQSADPVARYFGLSKGQVVKII 189 (205)
T ss_pred cCHHHHHHHHHHhCCC--HHHCCcccccChhhHhcCCCCCCEEEEE
Confidence 5688999999999985 3345778888889999999999999964
No 34
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=34.27 E-value=35 Score=20.48 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHHh
Q 026877 1 MAYSKDQLLARLKD 14 (231)
Q Consensus 1 m~~~~~~v~~~L~~ 14 (231)
||++++++++||+.
T Consensus 15 ~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 15 SGLSKEEIREFLEF 28 (30)
T ss_dssp TT--HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 68999999999975
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=33.61 E-value=1.3e+02 Score=20.70 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCCeEEEEcCC
Q 026877 5 KDQLLARLKDLQIEFSQYEHPA 26 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~ 26 (231)
..+++.+|+++||+|+.++...
T Consensus 13 ~~kv~~~L~~~gi~y~~~~v~~ 34 (77)
T cd03041 13 CRLVREVLTELELDVILYPCPK 34 (77)
T ss_pred HHHHHHHHHHcCCcEEEEECCC
Confidence 4789999999999999988754
No 36
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=33.37 E-value=47 Score=24.45 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEE
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNL 48 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtL 48 (231)
++.++..+.|++++|.- .+-|.+...+=+|+++|..++.++|-+
T Consensus 21 ls~eE~~~vLk~l~i~~--~qLPkI~~~DPva~~lgak~GdvVkIv 64 (80)
T COG2012 21 LSEEEAKEVLKELGIEP--EQLPKIKASDPVAKALGAKPGDVVKIV 64 (80)
T ss_pred cCHHHHHHHHHHhCCCH--HHCCcccccChhHHHccCCCCcEEEEE
Confidence 35788899999999954 345677777888999999999988754
No 37
>PRK10026 arsenate reductase; Provisional
Probab=33.37 E-value=84 Score=25.43 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~ 37 (231)
.....++|+++||+|+.++. ..-.|.+++...+
T Consensus 15 ~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l 48 (141)
T PRK10026 15 SRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLI 48 (141)
T ss_pred HHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHH
Confidence 46789999999999999875 3345767766655
No 38
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=33.26 E-value=67 Score=24.38 Aligned_cols=33 Identities=9% Similarity=0.143 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~ 37 (231)
..++.++|+++||+|+.++-. ...+.+++.+.+
T Consensus 12 c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~ 45 (111)
T cd03036 12 CRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWL 45 (111)
T ss_pred HHHHHHHHHHcCCceEEecccCCcccHHHHHHHH
Confidence 467899999999999998752 334555555544
No 39
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=33.10 E-value=51 Score=22.57 Aligned_cols=21 Identities=5% Similarity=0.064 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCCeEEEEcC
Q 026877 5 KDQLLARLKDLQIEFSQYEHP 25 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~ 25 (231)
..++.++|+++||+|+.++-.
T Consensus 14 C~ka~~~L~~~gi~~~~~di~ 34 (73)
T cd03027 14 CTAVRLFLREKGLPYVEINID 34 (73)
T ss_pred HHHHHHHHHHCCCceEEEECC
Confidence 478999999999999998754
No 40
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=32.96 E-value=87 Score=30.31 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHhCCC---CeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHh
Q 026877 1 MAYSKDQLLARLKDLQI---EFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRL 77 (231)
Q Consensus 1 m~~~~~~v~~~L~~~~I---~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~l 77 (231)
.||+++++..+|+-+|. ....+.++...++-+++..+-. ..-++.+.+... .|+|++...+..+..+.+++.|
T Consensus 280 lGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l~~--~~~leri~vHT~--~y~l~i~~~~~p~~~~~~~~aL 355 (446)
T TIGR02045 280 VGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKILLD--ELNLEVVQVHTI--YYIMYITHADNPLSEEELRRSL 355 (446)
T ss_pred ccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHHHHH--HcCCCEEEEEec--ceeEEEeccCCCCCHHHHHHHH
Confidence 37999999999988766 4455666655555555544311 113567778763 6899999999999888888755
Q ss_pred CC
Q 026877 78 GL 79 (231)
Q Consensus 78 G~ 79 (231)
-.
T Consensus 356 ~f 357 (446)
T TIGR02045 356 EF 357 (446)
T ss_pred HH
Confidence 43
No 41
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=32.94 E-value=96 Score=23.69 Aligned_cols=33 Identities=21% Similarity=0.042 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~ 37 (231)
..+..++|+++||.|+.++. ..-.|.+++...+
T Consensus 12 ~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l 45 (114)
T TIGR00014 12 SRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIF 45 (114)
T ss_pred HHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHH
Confidence 46789999999999999874 3345666666655
No 42
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=32.93 E-value=49 Score=24.66 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCCeEEEEcC
Q 026877 6 DQLLARLKDLQIEFSQYEHP 25 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~ 25 (231)
+++.++|+.++|+|+.++-.
T Consensus 20 ~~v~~lL~~k~I~f~eiDI~ 39 (92)
T cd03030 20 QEVLGFLEAKKIEFEEVDIS 39 (92)
T ss_pred HHHHHHHHHCCCceEEEecC
Confidence 67999999999999998854
No 43
>PF15516 BpuSI_N: BpuSI N-terminal domain
Probab=32.89 E-value=1.4e+02 Score=24.39 Aligned_cols=43 Identities=21% Similarity=0.462 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCC--eEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecC-CcEEEEE
Q 026877 5 KDQLLARLKDLQIE--FSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKK-HRFYIVS 61 (231)
Q Consensus 5 ~~~v~~~L~~~~I~--~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk-~~~vLVv 61 (231)
+..+-+.|..+|++ |+.++|.+..+ +.--.+++.|. .+++|++
T Consensus 16 ksAlnqAL~~~GLd~~yeviHH~~vgs--------------i~~DFvl~~k~t~k~vL~i 61 (159)
T PF15516_consen 16 KSALNQALKNLGLDTQYEVIHHEPVGS--------------IVPDFVLRRKSTNKYVLII 61 (159)
T ss_pred HHHHHHHHHHcCCccceeEEEeccCCc--------------cccceEEEecCCceEEEEE
Confidence 46788889999996 88899988765 33345566654 3566664
No 44
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=32.87 E-value=21 Score=22.15 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHhCCCCe
Q 026877 3 YSKDQLLARLKDLQIEF 19 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~ 19 (231)
|+..++++.|.++||.|
T Consensus 4 ltV~~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 4 LTVAQLKRILDEHGIEF 20 (35)
T ss_dssp --SHHHHHHHHHHT---
T ss_pred CcHHHHHHHHHHcCCCC
Confidence 45678999999999977
No 45
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=31.96 E-value=95 Score=24.57 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~ 37 (231)
.....++|+++||+|+.++.. .-.|.+++.+.+
T Consensus 13 crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l 46 (132)
T PRK13344 13 CKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL 46 (132)
T ss_pred HHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence 467899999999999998753 335556655544
No 46
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=31.78 E-value=86 Score=23.58 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCCeEEEEcCC-CCCHHHHHHH
Q 026877 5 KDQLLARLKDLQIEFSQYEHPA-VMTVEAQAKY 36 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~-~~Tiee~a~~ 36 (231)
...+.++|+++||+|+.++.-. -.|-+++.+.
T Consensus 9 ~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~ 41 (110)
T PF03960_consen 9 CRKALKWLEENGIEYEFIDYKKEPLSREELREL 41 (110)
T ss_dssp HHHHHHHHHHTT--EEEEETTTS---HHHHHHH
T ss_pred HHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHH
Confidence 4678999999999999988632 2455555443
No 47
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=31.62 E-value=48 Score=21.73 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC
Q 026877 6 DQLLARLKDLQIEFSQYEHPAV 27 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~~~ 27 (231)
..+.++|+++||+|+.++-...
T Consensus 13 ~~~~~~L~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 13 KKAKEFLDEKGIPYEEVDVDED 34 (60)
T ss_dssp HHHHHHHHHTTBEEEEEEGGGS
T ss_pred HHHHHHHHHcCCeeeEcccccc
Confidence 6789999999999999885443
No 48
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=30.93 E-value=1.4e+02 Score=21.23 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCC--CHHHHHHHhCCCCCceeEEEEEE
Q 026877 6 DQLLARLKDLQIEFSQYEHPAVM--TVEAQAKYVGNIGGGLSKNLFLK 51 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~~~~--Tiee~a~~~g~~~~~ivKtLvlk 51 (231)
.++.++|+++|++|+.+.-.... ..++.++... ....+-.+|+-
T Consensus 15 ~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~--g~~tvP~I~i~ 60 (80)
T COG0695 15 KRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGK--GQRTVPQIFIG 60 (80)
T ss_pred HHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhC--CCCCcCEEEEC
Confidence 67899999999999997654433 2333333321 33445555553
No 49
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=30.92 E-value=1.3e+02 Score=20.22 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCCeEEEEcCC
Q 026877 5 KDQLLARLKDLQIEFSQYEHPA 26 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~ 26 (231)
..++.++|++++|+|+.++-..
T Consensus 13 C~~ak~~L~~~~i~~~~i~i~~ 34 (75)
T cd03418 13 CVRAKALLDKKGVDYEEIDVDG 34 (75)
T ss_pred HHHHHHHHHHCCCcEEEEECCC
Confidence 3678999999999999987543
No 50
>PRK12559 transcriptional regulator Spx; Provisional
Probab=30.82 E-value=98 Score=24.44 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHhC
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYVG 38 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~g 38 (231)
.....++|+++||+|+.++. ....|.+++...+.
T Consensus 13 crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~ 47 (131)
T PRK12559 13 CRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILR 47 (131)
T ss_pred HHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHH
Confidence 46788999999999999875 34467777777653
No 51
>PRK05943 50S ribosomal protein L25; Reviewed
Probab=29.25 E-value=1.5e+02 Score=22.02 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=29.0
Q ss_pred CeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEEccC
Q 026877 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA 166 (231)
Q Consensus 128 ~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd~~~ 166 (231)
|-+.++.|.....+.++..+|.+++...+..-..+++.-
T Consensus 27 PaViYG~~~~~~~i~v~~~el~k~l~~~~~~~~~i~L~v 65 (94)
T PRK05943 27 PAIIYGGNEAPVSIVLDHKDVINLQAKAEFYKEVITLVI 65 (94)
T ss_pred CEEEECCCCCcEEEEEcHHHHHHHHhcCCCcceEEEEEE
Confidence 557788888889999999999999976552324555553
No 52
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=29.17 E-value=60 Score=24.73 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCCeEEEEcCC
Q 026877 6 DQLLARLKDLQIEFSQYEHPA 26 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~~ 26 (231)
+++..+|+.++|+|+.++-..
T Consensus 21 ~~v~~iL~a~kI~fe~vDIa~ 41 (99)
T PF04908_consen 21 QRVLMILEAKKIPFEEVDIAM 41 (99)
T ss_dssp HHHHHHHHHTT--EEEEETTT
T ss_pred HHHHHHHHHcCCCcEEEeCcC
Confidence 789999999999999998544
No 53
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=28.46 E-value=91 Score=24.52 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~ 37 (231)
..++.++|+++||+|+.++-. ...+.+++.+.+
T Consensus 13 C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l 46 (131)
T PRK01655 13 CRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL 46 (131)
T ss_pred HHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence 467899999999999998752 334555555544
No 54
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=28.20 E-value=87 Score=21.01 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCCeEEEEcC
Q 026877 5 KDQLLARLKDLQIEFSQYEHP 25 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~ 25 (231)
..+++-+|+++||+|+.+...
T Consensus 12 ~~~v~~~l~~~gi~~e~~~i~ 32 (74)
T cd03045 12 CRAVLLTAKALGLELNLKEVN 32 (74)
T ss_pred HHHHHHHHHHcCCCCEEEEec
Confidence 467899999999999987654
No 55
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=28.16 E-value=42 Score=21.98 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=13.1
Q ss_pred eCCHHHHHHHhCCCc
Q 026877 86 MAPEETMLEILKVPL 100 (231)
Q Consensus 86 ~Aseeel~~~lG~~~ 100 (231)
|.+++||.++||+..
T Consensus 2 fLT~~El~elTG~k~ 16 (47)
T PF13986_consen 2 FLTDEELQELTGYKR 16 (47)
T ss_pred CCCHHHHHHHHCCCC
Confidence 688999999999883
No 56
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=28.07 E-value=78 Score=21.03 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHhCCCCeEEEE
Q 026877 2 AYSKDQLLARLKDLQIEFSQYE 23 (231)
Q Consensus 2 ~~~~~~v~~~L~~~~I~~~~~~ 23 (231)
||+.+++.+.|++.|+.+....
T Consensus 8 g~~~~~a~~~l~~~g~~~~~~~ 29 (63)
T PF03793_consen 8 GMTYDEAKSILEAAGLTVNVVE 29 (63)
T ss_dssp TSBHHHHHHHHHHTT-EEEEEE
T ss_pred CCcHHHHHHHHHHCCCEEEEEE
Confidence 6899999999999999877755
No 57
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=27.44 E-value=1e+02 Score=23.51 Aligned_cols=33 Identities=15% Similarity=0.013 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a~~~ 37 (231)
..++.++|+++||+|+.++- ....|.+++.+.+
T Consensus 12 c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~ 45 (117)
T TIGR01617 12 CKKARRWLEANGIEYQFIDIGEDGPTREELLDIL 45 (117)
T ss_pred HHHHHHHHHHcCCceEEEecCCChhhHHHHHHHH
Confidence 46789999999999999874 3334555555544
No 58
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=27.21 E-value=98 Score=27.58 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=33.1
Q ss_pred HHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCC--CceeEEEEEEe
Q 026877 9 LARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIG--GGLSKNLFLKD 52 (231)
Q Consensus 9 ~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~--~~ivKtLvlk~ 52 (231)
.+.|+++||+|+.+ |.+.+...+|..+++.. -.+..++++.-
T Consensus 96 m~~L~~~gI~yevv--PGVss~~AAAA~L~~ELT~P~vsQtvilTR 139 (254)
T COG2875 96 MRELEALGIPYEVV--PGVSSFAAAAAALGIELTVPGVSQTVILTR 139 (254)
T ss_pred HHHHHHcCCCeEEe--CCchHHHHHHHHhCceeecCCcceeEEEEc
Confidence 46799999999986 58888888888888764 35777877754
No 59
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=26.47 E-value=1.1e+02 Score=29.71 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHhCCC---CeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHh
Q 026877 1 MAYSKDQLLARLKDLQI---EFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRL 77 (231)
Q Consensus 1 m~~~~~~v~~~L~~~~I---~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~l 77 (231)
.||+++++..+|+-+|. ....+..+.+.++-+++..+-.. .-+..+.+... .|+|+++..|..+..+.+++.|
T Consensus 294 lGmNE~ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a~~~L~~~--~~leri~vHT~--~y~l~i~~~~~p~~~~~~~~aL 369 (463)
T PRK03979 294 VGMDETEIANILNVLGYEELSERILKESRIEDVIEGAKILLDE--LNLERVQVHTL--YYIMYICKKDNPLSEEELRKSL 369 (463)
T ss_pred ccCCHHHHHHHHHHhcCcchhhhhhccccHHHHHHHHHHHHHH--cCCCEEEEEec--ceeeEEeccCCCCCHHHHHHHH
Confidence 37999999988887765 44455555555555555544221 12556777753 6899999999999888887755
Q ss_pred C
Q 026877 78 G 78 (231)
Q Consensus 78 G 78 (231)
-
T Consensus 370 ~ 370 (463)
T PRK03979 370 E 370 (463)
T ss_pred H
Confidence 4
No 60
>cd00495 Ribosomal_L25_TL5_CTC Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is found only in bacteria and some plastids. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L
Probab=26.47 E-value=1.8e+02 Score=21.18 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=24.9
Q ss_pred CeEEEecCCCCceEEEcHHHHHHHHHhcC
Q 026877 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIG 156 (231)
Q Consensus 128 ~~v~~~~G~~~~tl~is~~dL~kll~~~g 156 (231)
|-+.++.+.....+.++..+|.+++...+
T Consensus 26 PavvYG~~~~~~~i~v~~~~l~k~l~~~~ 54 (91)
T cd00495 26 PAVIYGKGKEPISISVDEKELEKLLRKEG 54 (91)
T ss_pred CEEEECCCCCCEEEEEcHHHHHHHHhhcC
Confidence 45677888888999999999999998776
No 61
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=26.21 E-value=40 Score=25.67 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=28.9
Q ss_pred eEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEEccCC
Q 026877 129 RCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167 (231)
Q Consensus 129 ~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd~~~~ 167 (231)
.||+..-+-+..|.=..+++..+|++.+.+++.+|++..
T Consensus 4 ~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~ 42 (99)
T PF04908_consen 4 KVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD 42 (99)
T ss_dssp EEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-
T ss_pred EEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC
Confidence 356666666777777889999999999999999999973
No 62
>PF05157 T2SE_Nter: Type II secretion system (T2SS), protein E, N-terminal domain; InterPro: IPR007831 This domain is found at the N terminus of members of the general secretory system II protein E. Proteins in this subfamily are typically involved in Type IV pilus biogenesis (e.g. Q9X4G8 from SWISSPROT), though some are involved in other processes; for instance aggregation in Myxococcus xanthus (e.g. Q9RF11 from SWISSPROT) [].; GO: 0005524 ATP binding, 0006810 transport; PDB: 2D27_A 2D28_C.
Probab=25.88 E-value=1.1e+02 Score=22.12 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=32.7
Q ss_pred EEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHHh
Q 026877 46 KNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEIL 96 (231)
Q Consensus 46 KtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~l 96 (231)
+.+-++..++.+++++......--...|+..+|..+-.+.+|+++++.+.+
T Consensus 49 ~~lPl~~~~~~l~va~~dP~~~~~~~~l~~~~~~~~i~~~la~~~~i~~~l 99 (109)
T PF05157_consen 49 RVLPLRQDDGTLVVAVADPLDPEALDELEFLLGKYPIEFVLATREDIDQLL 99 (109)
T ss_dssp TEEEEEECTTCEEEEES-TT-HHHHHHHHHHH-S--EEEEE--HHHHHHHH
T ss_pred CEEEEEEECCEEEEEEcCCCCHHHHHHHHHHcCCCCeEEEEeCHHHHHHHH
Confidence 456667666677777666655556678888888733478899999998876
No 63
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=24.91 E-value=4.8e+02 Score=24.57 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecC------------CcEEEEEEcCCCccCH
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKK------------HRFYIVSALADTKVDM 70 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk------------~~~vLVvv~gd~~vd~ 70 (231)
++.+.+++.|.+.+|.-..+....--|+++....+... ..-..+|.+-+|- ..+=.+++.+.+.+|+
T Consensus 199 ~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~n-rvY~p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nl 277 (365)
T COG1163 199 LDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGN-RVYKPALYVVNKIDLPGLEELERLARKPNSVPISAKKGINL 277 (365)
T ss_pred CCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhc-ceeeeeEEEEecccccCHHHHHHHHhccceEEEecccCCCH
Confidence 45788999999999987666655558999999887544 3456777776541 1233444566777777
Q ss_pred HHHHH
Q 026877 71 KVLSQ 75 (231)
Q Consensus 71 kkL~k 75 (231)
..|.+
T Consensus 278 d~L~e 282 (365)
T COG1163 278 DELKE 282 (365)
T ss_pred HHHHH
Confidence 77664
No 64
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=24.20 E-value=1.1e+02 Score=25.55 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEE
Q 026877 6 DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFL 50 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvl 50 (231)
+...+.|++.||+|+..--..-+|.+...++.....++-+|.++-
T Consensus 19 k~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIA 63 (162)
T COG0041 19 KKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIA 63 (162)
T ss_pred HHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 567889999999999976666677777777654444444554444
No 65
>PRK10638 glutaredoxin 3; Provisional
Probab=23.70 E-value=88 Score=22.04 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCCeEEEEcCC
Q 026877 5 KDQLLARLKDLQIEFSQYEHPA 26 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~ 26 (231)
..++.++|+++||+|+.++-..
T Consensus 15 C~~a~~~L~~~gi~y~~~dv~~ 36 (83)
T PRK10638 15 CHRAKALLNSKGVSFQEIPIDG 36 (83)
T ss_pred HHHHHHHHHHcCCCcEEEECCC
Confidence 4789999999999999987543
No 66
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=23.48 E-value=87 Score=23.22 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=34.1
Q ss_pred cccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEEccCC
Q 026877 123 GFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167 (231)
Q Consensus 123 ~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd~~~~ 167 (231)
-+.+.+.+.|.-|..+..-+=-.....++|...|.++.++|+...
T Consensus 8 ~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~ 52 (97)
T TIGR00365 8 QIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED 52 (97)
T ss_pred HhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC
Confidence 345566677766666666666677889999999999999999754
No 67
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=23.00 E-value=1.3e+02 Score=20.71 Aligned_cols=45 Identities=7% Similarity=0.108 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEE
Q 026877 5 KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLF 49 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLv 49 (231)
..+++-.|+++|++|+.+.-.....-.....+..+.+...+-+|+
T Consensus 12 s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 12 SQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred HHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 478899999999999997643321111122344556655555553
No 68
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=22.60 E-value=4e+02 Score=21.50 Aligned_cols=72 Identities=28% Similarity=0.375 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHh-------CCCCCceeEEEEEEecCCcEEEEE-EcCCCccCHHHHHH
Q 026877 4 SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYV-------GNIGGGLSKNLFLKDKKHRFYIVS-ALADTKVDMKVLSQ 75 (231)
Q Consensus 4 ~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~-------g~~~~~ivKtLvlk~kk~~~vLVv-v~gd~~vd~kkL~k 75 (231)
+.+++.+.|.+.| |+.++ +...|..|..+.+ |...+.....+|.+. +.-++.+ -+....-....+++
T Consensus 120 Ne~el~~~l~~~~--~~~v~-~~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~--~s~viei~~~~~~~~~~~~~a~ 194 (206)
T PF04577_consen 120 NEDELLEILKKYG--FEVVD-PEDLSFEEQVKLFASAKVIIGPHGSALTNLLFMPP--GSTVIEIFPPNYYNRHYRNLAQ 194 (206)
T ss_pred CHHHHHHHHhhCC--eEEEe-CCCCCHHHHHHHhcCCCEEEecCchHhheeeecCC--CCEEEEEeCCCCCCHHHHHHHH
Confidence 4678889999877 56666 4467888887764 455566666666643 3334443 34333334677777
Q ss_pred HhCCC
Q 026877 76 RLGLG 80 (231)
Q Consensus 76 ~lG~k 80 (231)
.+|..
T Consensus 195 ~~~~~ 199 (206)
T PF04577_consen 195 ALGIH 199 (206)
T ss_pred HcCCe
Confidence 77653
No 69
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.25 E-value=83 Score=19.31 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=19.9
Q ss_pred CHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHH
Q 026877 4 SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKY 36 (231)
Q Consensus 4 ~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~ 36 (231)
+..++.++|+++||.+..- ..|-+++.+.
T Consensus 5 s~~~L~~wL~~~gi~~~~~----~~~rd~Ll~~ 33 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKS----AKTRDELLKL 33 (38)
T ss_pred CHHHHHHHHHHcCCCCCCC----CCCHHHHHHH
Confidence 5689999999999966321 1366665543
No 70
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=20.76 E-value=2.1e+02 Score=21.16 Aligned_cols=47 Identities=9% Similarity=-0.108 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhC-CCCCceeEEEEEE
Q 026877 5 KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVG-NIGGGLSKNLFLK 51 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g-~~~~~ivKtLvlk 51 (231)
..++.++|++++|+|+.++-.......+..+.+. ......+-.+|+.
T Consensus 21 C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~ 68 (99)
T TIGR02189 21 CHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVG 68 (99)
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEEC
Confidence 3688999999999999987654433333333322 2223345555443
No 71
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=20.46 E-value=1.3e+02 Score=19.77 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCCeEEEEcC
Q 026877 5 KDQLLARLKDLQIEFSQYEHP 25 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~ 25 (231)
..+++-+|..+||+|+.+...
T Consensus 12 ~~~~~~~L~~~~l~~~~~~v~ 32 (74)
T cd03051 12 PRRVRIFLAEKGIDVPLVTVD 32 (74)
T ss_pred hHHHHHHHHHcCCCceEEEee
Confidence 478899999999999887643
No 72
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=20.41 E-value=36 Score=23.17 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCcee
Q 026877 7 QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLS 45 (231)
Q Consensus 7 ~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~iv 45 (231)
+..+.|+++||+|-- ....|.+++++..|+++..++
T Consensus 14 ~~a~vf~~~gIDfCC---gG~~~L~eA~~~~~ld~~~vl 49 (56)
T PF04405_consen 14 RAARVFRKYGIDFCC---GGNRSLEEACEEKGLDPEEVL 49 (56)
T ss_pred HHHHHHHHcCCcccC---CCCchHHHHHHHcCCCHHHHH
Confidence 456789999999865 345788999999888876554
No 73
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=20.32 E-value=2.3e+02 Score=17.63 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCCeEEEEcCC
Q 026877 5 KDQLLARLKDLQIEFSQYEHPA 26 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~ 26 (231)
..+++.+|+.++|+|+......
T Consensus 12 ~~~~~~~l~~~~i~~~~~~~~~ 33 (71)
T cd00570 12 SLRVRLALEEKGLPYELVPVDL 33 (71)
T ss_pred HHHHHHHHHHcCCCcEEEEeCC
Confidence 4688999999999999877654
Done!