Query 026877
Match_columns 231
No_of_seqs 195 out of 1415
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 00:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjf_A DNA-binding protein, pu 100.0 8E-38 2.7E-42 261.3 18.2 164 3-168 14-177 (180)
2 1vki_A Hypothetical protein AT 100.0 2.4E-37 8.2E-42 258.6 20.6 163 2-166 18-181 (181)
3 3op6_A Uncharacterized protein 100.0 5.1E-35 1.7E-39 237.7 15.5 151 2-164 1-152 (152)
4 2z0x_A Putative uncharacterize 100.0 1.5E-33 5E-38 229.7 18.6 153 1-166 3-157 (158)
5 1wdv_A Hypothetical protein AP 100.0 4.2E-32 1.4E-36 219.2 19.0 148 6-165 3-151 (152)
6 1dbu_A HI1434, cysteinyl-tRNA( 100.0 2.1E-31 7.1E-36 216.8 17.4 151 6-167 2-158 (158)
7 2dxa_A Protein YBAK; trans-edi 100.0 7.9E-31 2.7E-35 215.5 14.6 151 5-166 8-164 (166)
8 3mem_A Putative signal transdu 99.9 1.1E-24 3.7E-29 204.8 10.8 136 6-167 6-144 (457)
9 2j3l_A Prolyl-tRNA synthetase; 99.3 4.8E-11 1.6E-15 114.4 18.0 106 26-138 259-364 (572)
10 1hmj_A RPB5, protein (subunit 69.4 2.8 9.7E-05 29.7 2.5 44 3-48 15-58 (78)
11 4ayb_H DNA-directed RNA polyme 65.4 7.3 0.00025 27.9 4.0 60 3-64 23-84 (84)
12 1eik_A RNA polymerase subunit 62.9 3.1 0.00011 29.5 1.6 44 3-48 17-60 (77)
13 3gkx_A Putative ARSC family re 38.0 45 0.0015 24.7 4.7 33 5-37 17-50 (120)
14 3l78_A Regulatory protein SPX; 35.7 55 0.0019 24.0 4.9 34 5-38 13-47 (120)
15 3fz4_A Putative arsenate reduc 34.5 49 0.0017 24.4 4.4 33 5-37 16-49 (120)
16 3rdw_A Putative arsenate reduc 33.6 46 0.0016 24.6 4.1 33 5-37 18-51 (121)
17 2lqo_A Putative glutaredoxin R 31.8 33 0.0011 24.2 2.9 46 5-52 17-63 (92)
18 3h0g_E DNA-directed RNA polyme 31.5 22 0.00076 29.6 2.2 44 3-48 151-194 (210)
19 1s3c_A Arsenate reductase; ARS 31.1 43 0.0015 25.6 3.6 32 5-36 15-47 (141)
20 1aba_A Glutaredoxin; electron 30.8 39 0.0013 22.7 3.1 21 5-25 17-37 (87)
21 1whz_A Hypothetical protein; a 30.7 1.1E+02 0.0039 20.0 7.0 19 1-19 3-21 (70)
22 1z3e_A Regulatory protein SPX; 30.3 95 0.0033 23.0 5.5 33 5-37 14-47 (132)
23 3gkn_A Bacterioferritin comigr 30.1 1.6E+02 0.0054 21.5 6.8 54 4-61 79-141 (163)
24 3zyw_A Glutaredoxin-3; metal b 29.8 23 0.0008 25.7 1.8 48 120-167 9-56 (111)
25 1u6t_A SH3 domain-binding glut 29.4 40 0.0014 25.4 3.1 20 6-25 20-39 (121)
26 1xn7_A Hypothetical protein YH 27.9 44 0.0015 23.1 2.9 30 3-42 2-31 (78)
27 2ct6_A SH3 domain-binding glut 27.0 48 0.0016 23.8 3.1 20 7-26 29-48 (111)
28 1t1v_A SH3BGRL3, SH3 domain-bi 27.0 46 0.0016 22.8 2.9 33 6-38 22-55 (93)
29 4b4k_A N5-carboxyaminoimidazol 25.5 90 0.0031 25.4 4.7 47 6-52 39-85 (181)
30 3msz_A Glutaredoxin 1; alpha-b 25.4 65 0.0022 21.0 3.4 46 5-50 17-67 (89)
31 1dzf_A DNA-directed RNA polyme 24.6 25 0.00085 29.4 1.2 43 3-47 156-198 (215)
32 3f0i_A Arsenate reductase; str 24.5 40 0.0014 24.9 2.3 36 5-40 17-56 (119)
33 3eir_A Putative ATP/GTP bindin 24.4 49 0.0017 28.0 3.0 87 3-95 111-233 (281)
34 1rw1_A Conserved hypothetical 23.0 67 0.0023 23.2 3.3 32 5-36 13-45 (114)
35 3h8q_A Thioredoxin reductase 3 21.4 1E+02 0.0035 21.9 4.0 23 5-27 30-52 (114)
36 1wik_A Thioredoxin-like protei 21.0 50 0.0017 23.4 2.2 48 120-167 8-55 (109)
37 2kok_A Arsenate reductase; bru 20.7 66 0.0022 23.5 2.8 33 5-37 18-51 (120)
38 3sxu_B DNA polymerase III subu 20.6 41 0.0014 26.0 1.7 75 1-93 1-78 (138)
39 1nm3_A Protein HI0572; hybrid, 20.2 1.5E+02 0.005 23.7 5.1 34 5-38 183-216 (241)
No 1
>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1
Probab=100.00 E-value=8e-38 Score=261.28 Aligned_cols=164 Identities=36% Similarity=0.637 Sum_probs=156.6
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCC
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG 82 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~ 82 (231)
|+.++++++|+++||+|+.++||+..|++++++++|+++++++|||++++++++|+++++|+|+++|+++|++.+|.+
T Consensus 14 ~~~~~v~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~~lvvv~gd~~ld~kkl~~~lg~k-- 91 (180)
T 1vjf_A 14 KTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGSG-- 91 (180)
T ss_dssp CCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEEEEEEETTSCEEEEEEETTCCCCTTTHHHHHTCS--
T ss_pred chHHHHHHHHHHCCCCEEEEecCCCCCHHHHHHHcCCCccceeeEEEEEeCCCCEEEEEEeCCCccCHHHHHHHhCCC--
Confidence 578999999999999999999999999999999999999999999999996678999999999999999999999986
Q ss_pred cceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEE
Q 026877 83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162 (231)
Q Consensus 83 ~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~v 162 (231)
+++||++|+++++|||.+|+|+|||+.++..+.+++|+|+++...+.++||+|+++.++.|+++||.+++++.+|++.|+
T Consensus 92 ~l~~a~~eel~~~tG~~~G~v~P~Gl~~~~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v 171 (180)
T 1vjf_A 92 RLSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIV 171 (180)
T ss_dssp CEEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEE
T ss_pred CeeeCCHHHHHHHhCCCCceeCccccCCCCCCccEEEEchHHhcCCcEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEE
Confidence 59999999999999999999999999876667799999999999999999999999999999999999999999999999
Q ss_pred EccCCC
Q 026877 163 DLEANP 168 (231)
Q Consensus 163 d~~~~~ 168 (231)
||+++.
T Consensus 172 ~~~~~~ 177 (180)
T 1vjf_A 172 DFAAME 177 (180)
T ss_dssp ETTTTE
T ss_pred ECcccc
Confidence 998854
No 2
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1
Probab=100.00 E-value=2.4e-37 Score=258.62 Aligned_cols=163 Identities=33% Similarity=0.526 Sum_probs=154.7
Q ss_pred CCCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhC-CC
Q 026877 2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG-LG 80 (231)
Q Consensus 2 ~~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG-~k 80 (231)
.|+.++++++|+++||+|+.++||+..|++++++++|+.+++++|||++++++++|+++++|+|+++|++++++.+| .+
T Consensus 18 ~~~~~~~~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~vlvvv~gd~~ld~kkl~~~lg~~k 97 (181)
T 1vki_A 18 RKTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENAVVDLKSVHKTIGAAS 97 (181)
T ss_dssp CCCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEEEEEECTTCCEEEEEEETTCCBCTTTHHHHHTCSS
T ss_pred chHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHcCCCccceeEEEEEEEcCCeEEEEEEeCCCccCHHHHHHHhCCCC
Confidence 46789999999999999999999999999999999999999999999999976789999999999999999999999 55
Q ss_pred CCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCE
Q 026877 81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 160 (231)
Q Consensus 81 r~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~ 160 (231)
+++||++++++++|||.+|+|+|||+.+|..+++++|+|+++...+.++||+|.++.++.|+++||.+++++.||++.
T Consensus 98 --~l~~a~~eel~~~tG~~~G~v~P~Gl~~d~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~ 175 (181)
T 1vki_A 98 --RVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPL 175 (181)
T ss_dssp --SCEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCE
T ss_pred --CeEECCHHHHHHHHCCCcceECcceeccCCCCCCEEEEchHHhcCCeEEEeCCCCCeEEEECHHHHHHHHHhcCCCeE
Confidence 599999999999999999999999997665668999999999999999999999999999999999999999999999
Q ss_pred EEEccC
Q 026877 161 YVDLEA 166 (231)
Q Consensus 161 ~vd~~~ 166 (231)
|+||++
T Consensus 176 ~v~~~~ 181 (181)
T 1vki_A 176 VLKVSE 181 (181)
T ss_dssp EECCBC
T ss_pred EEeCCC
Confidence 999964
No 3
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=100.00 E-value=5.1e-35 Score=237.67 Aligned_cols=151 Identities=22% Similarity=0.353 Sum_probs=137.7
Q ss_pred CCCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCC
Q 026877 2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGK 81 (231)
Q Consensus 2 ~~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr 81 (231)
||+.++++++|+++||+|+.++||+..|++++++++|+++.+++|||+++++ ++|+++++|+|+++|++++++.+|.+
T Consensus 1 ~M~~~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg~~- 78 (152)
T 3op6_A 1 GMPVKKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMD-GRLAMVVLPASDHITFMKLKEAIGTS- 78 (152)
T ss_dssp -CHHHHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSCCEEEEEEEET-TEEEEEEEETTCCCCHHHHHHHHSCS-
T ss_pred CCcHHHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhheEEEEEEEEC-CeEEEEEECCCCeECHHHHHHHhCCC-
Confidence 6889999999999999999999999999999999999999999999999996 67999999999999999999999986
Q ss_pred CcceeCCHHHHHHHh-CCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCE
Q 026877 82 GGLRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 160 (231)
Q Consensus 82 ~~lr~Aseeel~~~l-G~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~ 160 (231)
+++||+++++.+.+ ||.+|+|+|||+.+ ++++|+|+++...+.+|+|+|+++.++.|+++||.++++ ..
T Consensus 79 -~~~~a~~e~l~~~~tG~~~G~v~P~g~~~----~~~v~~D~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~-----~~ 148 (152)
T 3op6_A 79 -DLELATESEFEGKFAECDVGAMPPFGNLY----GLPVLVSTKLSAQDNILFNAGSHSELMQLSFGDFEKLVK-----PT 148 (152)
T ss_dssp -CEEECCGGGTGGGCTTSCTTCCCSCGGGG----TCCEEEEHHHHTSSEEEEECSSSSEEEEEEHHHHHHHHC-----CE
T ss_pred -ceeeCCHHHHHHHhcCCCcCCCCCCCCCc----CCeEEEehhhccCCeEEEeCCCCCcEEEECHHHHHHHhc-----Ce
Confidence 59999999999885 99999999999986 699999999999999999999999999999999999997 44
Q ss_pred EEEc
Q 026877 161 YVDL 164 (231)
Q Consensus 161 ~vd~ 164 (231)
++|+
T Consensus 149 ~~d~ 152 (152)
T 3op6_A 149 LVTL 152 (152)
T ss_dssp EECC
T ss_pred ecCC
Confidence 5553
No 4
>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A
Probab=100.00 E-value=1.5e-33 Score=229.75 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=143.7
Q ss_pred CCCCHHHHHHHHHhCCCCe-EEEEcCC-CCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhC
Q 026877 1 MAYSKDQLLARLKDLQIEF-SQYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG 78 (231)
Q Consensus 1 m~~~~~~v~~~L~~~~I~~-~~~~h~~-~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG 78 (231)
|.|+.++++++|+++||+| +.++||+ ..|++++++++|+++++++|||+++++ ++|+++++|+|+++|++++++.+|
T Consensus 3 ~~m~~~~~~~~L~~~~i~~~~~~~~p~~~~t~~e~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg 81 (158)
T 2z0x_A 3 LSPSARRVQGALETRGFGHLKVVELPASTRTAKEAAQAVGAEVGQIVKSLVFVGE-KGAYLFLVSGKNRLDLGKATRLVG 81 (158)
T ss_dssp CCHHHHHHHHHHHHTTCTTSCEEECSSCCSSHHHHHHHHTCCGGGEEEEEEEEES-SSEEEEEEETTCCBCHHHHHHHHT
T ss_pred cchhHHHHHHHHHHcCCCCCEEEEcCCCCCCHHHHHHHcCCCHHHEEEEEEEEeC-CcEEEEEEECchhhCHHHHHHHhC
Confidence 4567899999999999999 9999995 999999999999999999999999984 679999999999999999999999
Q ss_pred CCCCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCC
Q 026877 79 LGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRD 158 (231)
Q Consensus 79 ~kr~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~ 158 (231)
.+ ++||+++++.++|||.+|+|+|||+.+ ++++|+|+++...+.+|+|+|.++.++.|+++||.++++
T Consensus 82 ~~---l~~a~~e~~~~~tG~~~G~v~P~gl~~----~v~v~iD~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~----- 149 (158)
T 2z0x_A 82 GP---LRQATPEEVRELTGFAIGGVPPVGHNT----PLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTG----- 149 (158)
T ss_dssp SC---EEECCHHHHHHHHSSCTTSCCSSCCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHC-----
T ss_pred CC---cEECCHHHHHHHhCCCCccCCcCCCCC----CCcEEEEhHHhcCCcEEEECCCCCEEEEECHHHHHHHhC-----
Confidence 73 999999999999999999999999975 799999999999999999999999999999999999997
Q ss_pred CEEEEccC
Q 026877 159 PAYVDLEA 166 (231)
Q Consensus 159 ~~~vd~~~ 166 (231)
..|+|++.
T Consensus 150 ~~~~di~~ 157 (158)
T 2z0x_A 150 AQVADLKE 157 (158)
T ss_dssp CEEECCBC
T ss_pred CEEEEeec
Confidence 56888874
No 5
>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1
Probab=100.00 E-value=4.2e-32 Score=219.17 Aligned_cols=148 Identities=17% Similarity=0.287 Sum_probs=139.8
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC-CCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcc
Q 026877 6 DQLLARLKDLQIEFSQYEHPAV-MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~~~-~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~l 84 (231)
++++++|+++||+|+.++||+. .|++++++++|+++++++|||++++++++|+++++|+|+++|++++++.+| + ++
T Consensus 3 ~~~~~~L~~~~i~~~~~~~p~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~~l~vv~gd~~ld~~kl~~~~g-~--~l 79 (152)
T 1wdv_A 3 EKVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPGDKRLNINSMKELAG-K--PV 79 (152)
T ss_dssp CHHHHHHHHHTCCCEEEECSSCCSSHHHHHHHHTSCGGGBEEEEEEEETTSCEEEEEEETTCCBCHHHHHHHHT-S--CE
T ss_pred HHHHHHHHHCCCCcEEEEcCCCCCCHHHHHHHcCCCHHHeEEEEEEEeCCCcEEEEEEECchhhCHHHHHHHHC-C--Cc
Confidence 5799999999999999999998 999999999999999999999999866689999999999999999999999 4 59
Q ss_pred eeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEEc
Q 026877 85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 164 (231)
Q Consensus 85 r~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd~ 164 (231)
+||++++++++|||.+|+|+|||+.+ ++++|+|+++...+.+|+++|.++.++.++++||.+++. ..|+|+
T Consensus 80 ~~a~~~e~~~~tG~~~G~v~P~g~~~----~v~v~~D~~l~~~~~v~~~~g~~~~~~~v~~~dl~~~~~-----~~~~di 150 (152)
T 1wdv_A 80 RLARANEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATG-----AVVADV 150 (152)
T ss_dssp EECCHHHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECC
T ss_pred eeCCHHHHHHHhCCCCCCCCcCCCCC----CCcEEEehHHhcCCeEEEcCCCCCeEEEECHHHHHHHhC-----CEEEee
Confidence 99999999999999999999999975 799999999999999999999999999999999999986 467887
Q ss_pred c
Q 026877 165 E 165 (231)
Q Consensus 165 ~ 165 (231)
+
T Consensus 151 ~ 151 (152)
T 1wdv_A 151 S 151 (152)
T ss_dssp B
T ss_pred e
Confidence 5
No 6
>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A
Probab=99.98 E-value=2.1e-31 Score=216.79 Aligned_cols=151 Identities=15% Similarity=0.237 Sum_probs=136.2
Q ss_pred HHHHHHHHhCCCCeEEE--EcCCC--CCHHHHHHHhCCCCCceeEEEEEEe--cCCcEEEEEEcCCCccCHHHHHHHhCC
Q 026877 6 DQLLARLKDLQIEFSQY--EHPAV--MTVEAQAKYVGNIGGGLSKNLFLKD--KKHRFYIVSALADTKVDMKVLSQRLGL 79 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~--~h~~~--~Tiee~a~~~g~~~~~ivKtLvlk~--kk~~~vLVvv~gd~~vd~kkL~k~lG~ 79 (231)
++++++|+++||+|+.+ +|++. .|++++|+.+|+++++++|||+++. ++++|+++++|+|+++|++++++.+|.
T Consensus 2 t~~~~~L~~~~i~~~~~~~~~~~~~~~t~~e~a~~l~~~~~~~~Ktl~~~~~~~~~~~~lvv~~gd~~ld~~kl~~~~g~ 81 (158)
T 1dbu_A 2 TPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLVAENGDQKKLACFVLATANMLNLKKAAKSIGV 81 (158)
T ss_dssp CHHHHHHHHHTCCCEEEECCCCCC-----CHHHHHHTCCGGGEEEEEEEEETTCTTSEEEEEEETTSCBCHHHHHHHHTC
T ss_pred ChHHHHHHHCCCCeEEEEEccCCcccchHHHHHHHcCCCHhHeEEEEEEEecCCCCcEEEEEEECCceeCHHHHHHHhCC
Confidence 57899999999999996 56665 6899999999999999999999985 345799999999999999999999998
Q ss_pred CCCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCC
Q 026877 80 GKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP 159 (231)
Q Consensus 80 kr~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~ 159 (231)
+ +++||++++++++|||.+|+|+|||+.. ++++|+|+++...+.+++|+|+++.++.++++||.+++. .
T Consensus 82 ~--~l~~a~~e~~~~~tG~~~G~v~P~g~~~----~v~v~iD~~l~~~~~i~~~ag~~~~~~~v~~~dl~~~~~-----~ 150 (158)
T 1dbu_A 82 K--KVEMADKDAAQKSTGYLVGGISPLGQKK----RVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLG-----A 150 (158)
T ss_dssp S--CEEECCHHHHHHHHSSCTTSCCSSSCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHT-----C
T ss_pred C--CeeeCCHHHHHHHhCCCCccCCCCCCCC----CCEEEEEhHHhcCCeEEEeCCCCCcEEEECHHHHHHHhC-----C
Confidence 6 5999999999999999999999999865 799999999999999999999999999999999999997 4
Q ss_pred EEEEccCC
Q 026877 160 AYVDLEAN 167 (231)
Q Consensus 160 ~~vd~~~~ 167 (231)
.|+||+.+
T Consensus 151 ~~~di~~~ 158 (158)
T 1dbu_A 151 EFTDIVDE 158 (158)
T ss_dssp EEECCBCC
T ss_pred EEEeeecC
Confidence 68888753
No 7
>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli}
Probab=99.97 E-value=7.9e-31 Score=215.48 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=138.2
Q ss_pred HHHHHHHHHhCCCCeEEE--EcCC--CCCHHHHHHHhCCCCCceeEEEEEEecCC--cEEEEEEcCCCccCHHHHHHHhC
Q 026877 5 KDQLLARLKDLQIEFSQY--EHPA--VMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLG 78 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~--~h~~--~~Tiee~a~~~g~~~~~ivKtLvlk~kk~--~~vLVvv~gd~~vd~kkL~k~lG 78 (231)
++++.++|+++||+|+.+ +|++ ..|++++|+.+|+++++++|||+++++++ +|+++++|+|+++|++++++.+|
T Consensus 8 ~t~~~~~L~~~~i~y~~~~~~h~~~~~~~~~e~a~~l~~~~~~~~Ktlv~~~~~~~~~~~lvvv~gd~~ld~~kl~~~lg 87 (166)
T 2dxa_A 8 MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALG 87 (166)
T ss_dssp CCHHHHHHHHTTCCCEEEECCCCTTSCCSSCHHHHHHTCCTTTEEEEEEEEETTEEEEEEEEEEETTSEECHHHHHHHHT
T ss_pred hhHHHHHHHHCCCCcEEEEEecCCcccchHHHHHHHcCCCHHHeeEEEEEEeCCCCceEEEEEEeCCceeCHHHHHHHhC
Confidence 378999999999999994 5887 36889999999999999999999998532 49999999999999999999999
Q ss_pred CCCCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCC
Q 026877 79 LGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRD 158 (231)
Q Consensus 79 ~kr~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~ 158 (231)
.+ +++||+++++.+++||.+|+|+|||+.. .+++|+|+++...+.+|+|+|+++.++.++++||.++++
T Consensus 88 ~~--~l~~a~~e~~~~~tG~~~G~v~P~g~~~----~v~v~iD~~l~~~~~i~~~ag~~~~~i~~~~~dl~~~~~----- 156 (166)
T 2dxa_A 88 AK--KVEMADPMVAQRSTGYLVGGISPLGQKK----RLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILD----- 156 (166)
T ss_dssp CS--CEEECCHHHHHHHHSSCTTCCCSSSCSS----CCCEEEEGGGGGSSCEEEEEEETTEEEEECHHHHHHHHT-----
T ss_pred CC--ceEECCHHHHHHccCCCCccCCCcCCCC----CCeEEEEhHHhcCCeEEEcCCCCCcEEEECHHHHHHHhC-----
Confidence 86 5999999999999999999999999975 799999999999999999999999999999999999987
Q ss_pred CEEEEccC
Q 026877 159 PAYVDLEA 166 (231)
Q Consensus 159 ~~~vd~~~ 166 (231)
..|+|++.
T Consensus 157 ~~~~di~~ 164 (166)
T 2dxa_A 157 AKFADIAR 164 (166)
T ss_dssp CEEECCEE
T ss_pred CEEEEEec
Confidence 45888764
No 8
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=99.91 E-value=1.1e-24 Score=204.77 Aligned_cols=136 Identities=17% Similarity=0.251 Sum_probs=125.6
Q ss_pred HHHHHHHHhC--CCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCc
Q 026877 6 DQLLARLKDL--QIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG 83 (231)
Q Consensus 6 ~~v~~~L~~~--~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~ 83 (231)
++++++|+++ ||+|+.++ |+++++++|||+++++++ |+++++|+++++|++++++.+|.+
T Consensus 6 ~~v~~~L~~~~~~i~y~~~~--------------g~~~~~i~Ktl~~~~~~~-~~l~v~p~~~~ldlk~l~~~~g~k--- 67 (457)
T 3mem_A 6 VVVQQALGDNAPGVSFRSVS--------------QIDTGHLLRMVLLSDDQG-NLQAICRRNDMLDLEALNKRLGRD--- 67 (457)
T ss_dssp HHHHHHHTTSCTTCEEEECC--------------SSCGGGBEEEEEEEETTE-EEEEEEETTSEECHHHHHHHHTCC---
T ss_pred HHHHHHHHhCCCCCceEEeC--------------CCCHhHeeeEEEEEECCc-EEEEEecCCCeeCHHHHHHHhCCC---
Confidence 7899999999 99999987 677999999999999754 999999999999999999999974
Q ss_pred ceeCCHHHHHHHh-CCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEE
Q 026877 84 LRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162 (231)
Q Consensus 84 lr~Aseeel~~~l-G~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~v 162 (231)
++|++++++.++| ||.+|+|||||..+ ++++|+|+++.+++.||+++|+++.++.|+++||.+++++.+| .
T Consensus 68 ~~~~~~~~~~~~~~g~~~Ggv~P~g~~~----~~~~~iD~~l~~~~~i~~~~G~~~~~i~l~~~dl~~~~~~~~~----~ 139 (457)
T 3mem_A 68 LRMMQRREQVRVRQKAGLQELPALPSLT----GWPTVVDRRVDELEAVALELGEQDLGLMMPAEDFRQLTAKAAR----H 139 (457)
T ss_dssp CEECCHHHHHHHHHHHTCSSCCSCGGGT----CCCEEEEHHHHHCSEEEEECSSSSEEEEEEHHHHHHHTTTSEE----E
T ss_pred CeeCCHHHHHHHcCCCCCCCCCCCCCCc----CCCEEEehhhccCCEEEEECCCCCceEEECHHHHHHHHccCCc----c
Confidence 9999999999999 69999999999987 7999999999999999999999999999999999999987655 4
Q ss_pred EccCC
Q 026877 163 DLEAN 167 (231)
Q Consensus 163 d~~~~ 167 (231)
+|+..
T Consensus 140 ~f~~~ 144 (457)
T 3mem_A 140 DFAVD 144 (457)
T ss_dssp CCEEC
T ss_pred ccccc
Confidence 55554
No 9
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.33 E-value=4.8e-11 Score=114.37 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=96.1
Q ss_pred CCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHHhCCCcccccc
Q 026877 26 AVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTP 105 (231)
Q Consensus 26 ~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~lG~~~G~VsP 105 (231)
...|++++++.+|++..+++|+++++.+ ++++++++++++++|++++.+.+|.+ .+++++.+++.+++|+..|+++|
T Consensus 259 ~~~ti~~l~~~lg~~~~~i~K~l~~~~~-~~~~~vli~gd~el~~~kl~~~l~~~--~l~~a~~~el~~~~g~~~g~~~p 335 (572)
T 2j3l_A 259 EVGTIAEVANFFEVEPQRIIKSVLFIAD-EEPVMVLVRGDHDVNDVKLKNFLGAD--FLDEATEEDARRVLGAGFGSIGP 335 (572)
T ss_dssp TCCSHHHHHHHHTCCGGGBEEEEEEEET-TEEEEEEEETTCCBCHHHHHHHHTCS--CEEECCHHHHHHHHSSCTTSCCS
T ss_pred CCCcHHHHHHHhCcCHHHeEEEEEEEeC-CcEEEEEeeCccccCHHHHHHhhCCC--ccccCCHHHHHHhhCCCccccCC
Confidence 3567999999999999999999999985 47999999999999999999999975 59999999999999999999999
Q ss_pred cccCCCCCCCeEEEEeccccCCCeEEEecCCCC
Q 026877 106 FALVNESARDVALLLDKGFKAQERCFFHPLSND 138 (231)
Q Consensus 106 fgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~ 138 (231)
+|+.. ++++++|.++.....+++++|..+
T Consensus 336 ~gl~~----~i~~~iD~sl~r~~~~~~ga~~~~ 364 (572)
T 2j3l_A 336 VNVSE----DVKIYADLAVQDLANAIVGANEDG 364 (572)
T ss_dssp TTCCT----TCEEEEETTTTTCCSEEEECSSTT
T ss_pred ccCCC----CCcEEEehhhhcCCceEEccCCCC
Confidence 99963 699999999999999999997643
No 10
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=69.40 E-value=2.8 Score=29.74 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEE
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNL 48 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtL 48 (231)
|+.++..++|++.+|. ...-|.+...+-+|+++|..+++++|-.
T Consensus 15 Ls~eEk~~lL~~y~i~--~~qLPrI~~~DPvar~~G~k~GdVvkI~ 58 (78)
T 1hmj_A 15 VPKEEVEEILKRYNIK--IQQLPKIYEDDPVIQEIGAKEGDVVRVI 58 (78)
T ss_pred CCHHHHHHHHHHcCCC--HHHCCeeeCcCHhhHHhCCCCCCEEEEE
Confidence 5789999999999995 3345778888889999999999999973
No 11
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=65.43 E-value=7.3 Score=27.90 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCC--cEEEEEEcC
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALA 64 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~--~~vLVvv~g 64 (231)
++.++..++|++.+|.-+ +-|.+...+-+|+++|..+++++|-.=-..-.| -+|=+|++|
T Consensus 23 Ls~eE~~~ll~~y~i~~~--qLP~I~~~DPva~~~g~k~GdVvkI~R~S~tag~~~~YR~vv~g 84 (84)
T 4ayb_H 23 LSIDEAYKILKELGIRPE--QLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVISG 84 (84)
T ss_dssp CCHHHHHHHHHHHTCCGG--GSCCEESSSHHHHHHTCCTTCEEEEEEEETTTEEEEEEEEEEC-
T ss_pred CCHHHHHHHHHHhcCCHh--HCCeecccCHhHHhhCCCCCCEEEEEEcCCCCCccEEEEEEeCC
Confidence 467899999999999643 447777777799999999999998653221112 366666654
No 12
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=62.88 E-value=3.1 Score=29.48 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEE
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNL 48 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtL 48 (231)
|+.++..++|++.+|. ...-|.+...+-+|+++|..+++++|-.
T Consensus 17 Ls~eEk~~lL~~y~i~--~~qLP~I~~~DPvar~~G~k~GdVvkI~ 60 (77)
T 1eik_A 17 LNESEAKRVLKELDAH--PEQLPKIKTTDPVAKAIGAKRGDIVKII 60 (77)
T ss_dssp ECHHHHHHHHHHTTCC--TTTSCCCBTTSHHHHGGGCCTTCEEEEE
T ss_pred cCHHHHHHHHHHcCCC--HHHCCeeeCcCHhhHHhCCCCCCEEEEE
Confidence 5689999999999995 2345778888999999999999999973
No 13
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=37.96 E-value=45 Score=24.66 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~ 37 (231)
..++.++|+++||+|+.++.. .-.|.+++.+.+
T Consensus 17 c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l 50 (120)
T 3gkx_A 17 CQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWI 50 (120)
T ss_dssp HHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEecccCcCCHHHHHHHH
Confidence 478899999999999998753 335666655543
No 14
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=35.69 E-value=55 Score=24.02 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHhC
Q 026877 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYVG 38 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~g 38 (231)
..++.++|+++||+|+.++.. .-.|.+++.+.++
T Consensus 13 c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l~ 47 (120)
T 3l78_A 13 CRKARAWLNRHDVVFQEHNIMTSPLSRDELLKILS 47 (120)
T ss_dssp HHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHHh
Confidence 467899999999999998863 3467777776653
No 15
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=34.45 E-value=49 Score=24.41 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~ 37 (231)
..+..++|+++||+|+.++.. .-.|.+++.+.+
T Consensus 16 c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l 49 (120)
T 3fz4_A 16 CRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWL 49 (120)
T ss_dssp HHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEeccCchhHHHHHHHH
Confidence 467899999999999998753 345666665554
No 16
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=33.63 E-value=46 Score=24.63 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~ 37 (231)
..++.++|+++||+|+.++.. .-.|.+++.+.+
T Consensus 18 c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l 51 (121)
T 3rdw_A 18 SRETLALVEQQGITPQVVLYLETPPSVDKLKELL 51 (121)
T ss_dssp HHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHH
Confidence 478899999999999988753 335666655543
No 17
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=31.78 E-value=33 Score=24.21 Aligned_cols=46 Identities=13% Similarity=0.020 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCC-CCceeEEEEEEe
Q 026877 5 KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNI-GGGLSKNLFLKD 52 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~-~~~ivKtLvlk~ 52 (231)
..++.++|+++||+|+.++-..- .+......... ....+-++++.+
T Consensus 17 C~~aK~~L~~~gi~y~~idi~~d--~~~~~~~~~~~~G~~tVP~I~i~D 63 (92)
T 2lqo_A 17 CLRLKTALTANRIAYDEVDIEHN--RAAAEFVGSVNGGNRTVPTVKFAD 63 (92)
T ss_dssp HHHHHHHHHHTTCCCEEEETTTC--HHHHHHHHHHSSSSSCSCEEEETT
T ss_pred HHHHHHHHHhcCCceEEEEcCCC--HHHHHHHHHHcCCCCEeCEEEEeC
Confidence 47899999999999999885432 22222222222 234566666643
No 18
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=31.55 E-value=22 Score=29.62 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEE
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNL 48 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtL 48 (231)
++.++..++|++.+|. ...-|.+...+-+|+++|..+++++|-.
T Consensus 151 ls~eE~~~lL~~y~i~--~~qLP~I~~~DPv~~~~g~k~GdVvkI~ 194 (210)
T 3h0g_E 151 LSPDEKKELLDRYKLR--ETQLPRIQLADPVARYLGLKRGEVVKIV 194 (210)
T ss_dssp CCHHHHHHHHHHTCCC--TTTSCCCCTTCHHHHHHTCCTTCEEEEE
T ss_pred cCHHHHHHHHHHcCCC--HHHCCcccccCcchhhhCCCCCCEEEEE
Confidence 5789999999999995 3445788888999999999999999963
No 19
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=31.05 E-value=43 Score=25.58 Aligned_cols=32 Identities=9% Similarity=-0.036 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHH
Q 026877 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKY 36 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~ 36 (231)
..++.++|+++||+|+.++.. .-.+.+++.+.
T Consensus 15 crkak~~L~~~gi~~~~idi~~~~~~~~eL~~~ 47 (141)
T 1s3c_A 15 SRNTLEMIRNSGTEPTIILYLENPPSRDELVKL 47 (141)
T ss_dssp HHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCccHHHHHHH
Confidence 478999999999999998753 33566665544
No 20
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=30.85 E-value=39 Score=22.71 Aligned_cols=21 Identities=14% Similarity=-0.078 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCCeEEEEcC
Q 026877 5 KDQLLARLKDLQIEFSQYEHP 25 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~ 25 (231)
..++.++|+++||+|+.++-.
T Consensus 17 C~~ak~~L~~~gi~y~~idI~ 37 (87)
T 1aba_A 17 CDNAKRLLTVKKQPFEFINIM 37 (87)
T ss_dssp HHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHHcCCCEEEEEee
Confidence 468999999999999998865
No 21
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=30.68 E-value=1.1e+02 Score=19.96 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHhCCCCe
Q 026877 1 MAYSKDQLLARLKDLQIEF 19 (231)
Q Consensus 1 m~~~~~~v~~~L~~~~I~~ 19 (231)
|+|+..++...|++.|..+
T Consensus 3 mp~~~~elik~L~~~G~~~ 21 (70)
T 1whz_A 3 MPPRPEEVARKLRRLGFVE 21 (70)
T ss_dssp CCCCHHHHHHHHHHTTCEE
T ss_pred CCCCHHHHHHHHHHCCCEE
Confidence 7889999999999999644
No 22
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=30.31 E-value=95 Score=22.96 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~ 37 (231)
..++.++|+++||+|+.++.. ...+.+++.+.+
T Consensus 14 C~ka~~~L~~~gi~y~~~di~~~~~~~~el~~~l 47 (132)
T 1z3e_A 14 CRKARAWLEEHEIPFVERNIFSEPLSIDEIKQIL 47 (132)
T ss_dssp HHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEccCCCccHHHHHHHH
Confidence 467899999999999998864 345667776665
No 23
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=30.11 E-value=1.6e+02 Score=21.51 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=34.3
Q ss_pred CHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCc---------eeEEEEEEecCCcEEEEE
Q 026877 4 SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGG---------LSKNLFLKDKKHRFYIVS 61 (231)
Q Consensus 4 ~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~---------ivKtLvlk~kk~~~vLVv 61 (231)
+.+.+.++++++++.|..+.-+. .+.++.+|+.... .+-+.++-+++|+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 79 SVKSHDNFCAKQGFAFPLVSDGD----EALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp CHHHHHHHHHHHCCSSCEEECTT----CHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHhCCCceEEECCc----HHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE
Confidence 35678888888888887764322 2566666664321 155677777777765554
No 24
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=29.81 E-value=23 Score=25.68 Aligned_cols=48 Identities=13% Similarity=0.018 Sum_probs=39.2
Q ss_pred EeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEEccCC
Q 026877 120 LDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167 (231)
Q Consensus 120 vD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd~~~~ 167 (231)
+++-+...+.+.|.-|..+..-+=-.....++|+..|..+.++|+...
T Consensus 9 v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d 56 (111)
T 3zyw_A 9 LKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSD 56 (111)
T ss_dssp HHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC
T ss_pred HHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCC
Confidence 445566677888888888877777788889999999999999999864
No 25
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=29.39 E-value=40 Score=25.43 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCCeEEEEcC
Q 026877 6 DQLLARLKDLQIEFSQYEHP 25 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~ 25 (231)
+++.++|+++||+|+.++-.
T Consensus 20 ~~aK~lL~~kgV~feEidI~ 39 (121)
T 1u6t_A 20 QDVLGFLEANKIGFEEKDIA 39 (121)
T ss_dssp HHHHHHHHHTTCCEEEEECT
T ss_pred HHHHHHHHHCCCceEEEECC
Confidence 68999999999999999854
No 26
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=27.91 E-value=44 Score=23.05 Aligned_cols=30 Identities=13% Similarity=-0.127 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCC
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGG 42 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~ 42 (231)
|+-++|+++|+++|. .++.|+|+.+++...
T Consensus 2 m~L~~Il~~L~~~g~----------vsv~eLa~~l~VS~~ 31 (78)
T 1xn7_A 2 ASLIQVRDLLALRGR----------MEAAQISQTLNTPQP 31 (78)
T ss_dssp CCHHHHHHHHHHSCS----------BCHHHHHHHTTCCHH
T ss_pred chHHHHHHHHHHcCC----------CcHHHHHHHHCcCHH
Confidence 567889999988775 688999999987754
No 27
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.98 E-value=48 Score=23.81 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCCeEEEEcCC
Q 026877 7 QLLARLKDLQIEFSQYEHPA 26 (231)
Q Consensus 7 ~v~~~L~~~~I~~~~~~h~~ 26 (231)
++.++|++++|+|+.++-..
T Consensus 29 ~ak~~L~~~gi~y~~vdI~~ 48 (111)
T 2ct6_A 29 DVVRFLEANKIEFEEVDITM 48 (111)
T ss_dssp HHHHHHHHTTCCEEEEETTT
T ss_pred HHHHHHHHcCCCEEEEECCC
Confidence 79999999999999988643
No 28
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=26.97 E-value=46 Score=22.80 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC-CCHHHHHHHhC
Q 026877 6 DQLLARLKDLQIEFSQYEHPAV-MTVEAQAKYVG 38 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~~~-~Tiee~a~~~g 38 (231)
.++.++|+++||+|+.++-... ...+++.+..|
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 6899999999999999886432 12233444444
No 29
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=25.50 E-value=90 Score=25.35 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEe
Q 026877 6 DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKD 52 (231)
Q Consensus 6 ~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~ 52 (231)
+...+.|+++||+|+..--..-+|.+.+.++......+-+|-++--+
T Consensus 39 ~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~A 85 (181)
T 4b4k_A 39 KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGA 85 (181)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred HHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEec
Confidence 67889999999999998777778888888876544444466555554
No 30
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=25.40 E-value=65 Score=21.02 Aligned_cols=46 Identities=9% Similarity=0.025 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCCC---CHHHHHHHhCC--CCCceeEEEEE
Q 026877 5 KDQLLARLKDLQIEFSQYEHPAVM---TVEAQAKYVGN--IGGGLSKNLFL 50 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~~~---Tiee~a~~~g~--~~~~ivKtLvl 50 (231)
..++..+|+++|++|+.++..... ..++..+..|. .+...+-++++
T Consensus 17 C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i 67 (89)
T 3msz_A 17 CVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI 67 (89)
T ss_dssp HHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE
T ss_pred HHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE
Confidence 378899999999999988654322 12344444443 11134555554
No 31
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=24.57 E-value=25 Score=29.44 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEE
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKN 47 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKt 47 (231)
++.++..++|++.+|.- ..-|.+...+-+|+++|..+++++|-
T Consensus 156 l~~eE~~~lL~~y~i~~--~qLP~I~~~DPvar~~g~k~G~vvkI 198 (215)
T 1dzf_A 156 LSSDEKRELLKRYRLKE--SQLPRIQRADPVALYLGLKRGEVVKI 198 (215)
T ss_dssp CCHHHHHHHHHHTTCCG--GGSCEECTTCHHHHHHTCCTTCEEEE
T ss_pred ccHHHHHHHHHHcCCCH--HHCCceeccChhhHHhCCcCCCEEEE
Confidence 56889999999999953 33466778888999999999999996
No 32
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=24.50 E-value=40 Score=24.91 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHH---HHhCCC
Q 026877 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQA---KYVGNI 40 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h-~~~~Tiee~a---~~~g~~ 40 (231)
..+..++|+++||+|+.++. ..-.|.+++. +.+|..
T Consensus 17 c~ka~~~L~~~gi~~~~~di~~~~~t~~eL~~~l~~~g~~ 56 (119)
T 3f0i_A 17 SRETLALLENQGIAPQVIKYLETSPSVEELKRLYQQLGLN 56 (119)
T ss_dssp HHHHHHHHHHTTCCCEEECHHHHCCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCceEEEEeccCcCcHHHHHHHHHHcCCc
Confidence 47889999999999999863 1224555544 445544
No 33
>3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A
Probab=24.44 E-value=49 Score=27.97 Aligned_cols=87 Identities=14% Similarity=0.215 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecC---CcEEEEEEcCCCc------------
Q 026877 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKK---HRFYIVSALADTK------------ 67 (231)
Q Consensus 3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk---~~~vLVvv~gd~~------------ 67 (231)
++.+.+..++.+..+...-+..+ ..+..+.++.+...++ .|+.++...+ |+-|+|=+|..++
T Consensus 111 ~SAnnIfKLmte~d~~~dp~~~e-~l~~~qfaE~l~~L~s--~KNyV~~VNDgrLGH~flIDiPa~~~~~r~ayiYQSDL 187 (281)
T 3eir_A 111 LSANNIFKLMTEKDVPIDPTSIE-YLENTSFAEHVNTLDS--HKNYVVIVNDGRLGHKFLIDLPALTQGPRTAYIIQSDL 187 (281)
T ss_dssp HHHHHHHHHHHCSSSCCCTTTSC-CBCSSCHHHHHTTSCT--TSEEEEEEEETTTTEEEEEEECCC----CCBEEECCBC
T ss_pred ccHHHHHHHHhcCCcccCceehh-hcchHHHHHHHhhhhc--ccCEEEEEcCCCcceeEEEeccCCCCCCcceEEEeccc
Confidence 35677888887777655433333 4455666777665555 6888877633 4567776665544
Q ss_pred ---------------------cCHHHHHHHhCCCCCcceeCCHHHHHHH
Q 026877 68 ---------------------VDMKVLSQRLGLGKGGLRMAPEETMLEI 95 (231)
Q Consensus 68 ---------------------vd~kkL~k~lG~kr~~lr~Aseeel~~~ 95 (231)
|++.+|.++|.. ++.+.++++-.++
T Consensus 188 G~Galp~lr~eDWmt~rg~~pIsLd~l~~lls~---ef~~l~dd~q~~l 233 (281)
T 3eir_A 188 GGGALPAVRVEDWISRRGSDPVSLDELNQLLSK---DFSKMPDDVQTRL 233 (281)
T ss_dssp CSSSSCCBCHHHHHHHHTTCCBCHHHHHHHTSG---GGGGSCHHHHHHH
T ss_pred CCCcCcceeHHHHHhhcCCCcccHHHHHHHHHH---HhhhCCHHHHHHH
Confidence 889999998874 6999998875554
No 34
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=22.98 E-value=67 Score=23.18 Aligned_cols=32 Identities=6% Similarity=0.122 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHH
Q 026877 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKY 36 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~ 36 (231)
..++.++|+++||+|+.++-. ...|.++..+.
T Consensus 13 C~kak~~L~~~gi~~~~~di~~~~~~~~~l~~~ 45 (114)
T 1rw1_A 13 MKKARTWLDEHKVAYDFHDYKAVGIDREHLRRW 45 (114)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCceEEEeecCCCCCHHHHHHH
Confidence 467899999999999998753 23455555444
No 35
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=21.42 E-value=1e+02 Score=21.89 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCC
Q 026877 5 KDQLLARLKDLQIEFSQYEHPAV 27 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~~ 27 (231)
..++.++|+++|++|+.++-...
T Consensus 30 C~~ak~~L~~~~i~~~~~dvd~~ 52 (114)
T 3h8q_A 30 STRVKELFSSLGVECNVLELDQV 52 (114)
T ss_dssp HHHHHHHHHHTTCCCEEEETTTS
T ss_pred HHHHHHHHHHcCCCcEEEEecCC
Confidence 36789999999999999886543
No 36
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=20.96 E-value=50 Score=23.37 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=34.5
Q ss_pred EeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEEccCC
Q 026877 120 LDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167 (231)
Q Consensus 120 vD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd~~~~ 167 (231)
+++.+...+.+.|..|..+..-+-......++|+..+..+.++|+...
T Consensus 8 ~~~~i~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~ 55 (109)
T 1wik_A 8 LKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED 55 (109)
T ss_dssp HHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSC
T ss_pred HHHHhccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCC
Confidence 344445555666666655555555678889999999999999999864
No 37
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=20.69 E-value=66 Score=23.47 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHh
Q 026877 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYV 37 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~ 37 (231)
..++.++|+++||+|+.++.. ...|.++..+.+
T Consensus 18 C~ka~~~L~~~gi~y~~~di~~~~~~~~~l~~~~ 51 (120)
T 2kok_A 18 MKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFL 51 (120)
T ss_dssp HHHHHHHHHHHTCCEEEEEHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEeeeCCCCCHHHHHHHH
Confidence 478999999999999998753 234556655443
No 38
>3sxu_B DNA polymerase III subunit PSI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} PDB: 1em8_B* 3gli_O*
Probab=20.60 E-value=41 Score=26.00 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCcc---CHHHHHHHh
Q 026877 1 MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKV---DMKVLSQRL 77 (231)
Q Consensus 1 m~~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~v---d~kkL~k~l 77 (231)
|||+... .+|++.||..=...||.+...+.... + - .+-++++| .+..-.. =+..+=+.+
T Consensus 1 ~~~~rrd--~~LqeMGItqW~Lr~P~~L~g~~~i~---l--p----------~~~rLliV-s~~~p~~~~~L~~dVLrsl 62 (138)
T 3sxu_B 1 MGTSRRD--WQLQQLGITQWSLRRPGALQGEIAIA---I--P----------AHVRLVMV-ANDLPALTDPLVSDVLRAL 62 (138)
T ss_dssp --------------------------------------C--C----------TTCCEEEE-CSSCCCTTCHHHHHHHHHH
T ss_pred CCccHHH--HHHHHhCCCeEEecCcccccCCcccc---c--C----------CceEEEEE-eCCCCcccCHHHHHHHHHc
Confidence 7887753 89999999988888887653311111 1 1 11222222 2221111 245555677
Q ss_pred CCCCCcceeCCHHHHH
Q 026877 78 GLGKGGLRMAPEETML 93 (231)
Q Consensus 78 G~kr~~lr~Aseeel~ 93 (231)
+.....+.+.++|++.
T Consensus 63 ~L~~~q~~~lt~eql~ 78 (138)
T 3sxu_B 63 TVSPDQVLQLTPEKIA 78 (138)
T ss_dssp TCCGGGEEEECHHHHT
T ss_pred CCCHHHeeeeCHHHHh
Confidence 7766678899999985
No 39
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=20.17 E-value=1.5e+02 Score=23.71 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhC
Q 026877 5 KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVG 38 (231)
Q Consensus 5 ~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g 38 (231)
..++.++|+++||+|+.++-......+++.+..|
T Consensus 183 C~~a~~~L~~~~i~~~~~~i~~~~~~~~l~~~~g 216 (241)
T 1nm3_A 183 CAKAKQLLHDKGLSFEEIILGHDATIVSVRAVSG 216 (241)
T ss_dssp HHHHHHHHHHHTCCCEEEETTTTCCHHHHHHHTC
T ss_pred HHHHHHHHHHcCCceEEEECCCchHHHHHHHHhC
Confidence 3678899999999999988655455566666654
Done!