Query 026878
Match_columns 231
No_of_seqs 162 out of 332
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 13:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05712 MRG: MRG; InterPro: 100.0 4.8E-51 1E-55 348.5 13.8 171 44-216 4-194 (194)
2 KOG3001 Dosage compensation re 100.0 3.9E-35 8.4E-40 273.1 7.5 172 57-228 211-389 (391)
3 cd04404 RhoGAP-p50rhoGAP RhoGA 62.4 93 0.002 26.1 10.8 137 69-212 22-195 (195)
4 PF02899 Phage_int_SAM_1: Phag 54.5 70 0.0015 22.2 8.9 82 104-206 1-82 (84)
5 PF13495 Phage_int_SAM_4: Phag 50.7 27 0.00058 24.6 3.8 45 94-139 37-81 (85)
6 PF15136 UPF0449: Uncharacteri 43.8 17 0.00036 28.2 1.9 21 91-111 7-27 (97)
7 PF11390 FdsD: NADH-dependant 40.4 43 0.00094 23.6 3.4 33 168-200 1-33 (61)
8 cd04402 RhoGAP_ARHGAP20 RhoGAP 39.7 2.3E+02 0.0049 23.8 10.5 143 69-215 14-191 (192)
9 PRK00236 xerC site-specific ty 39.4 2.3E+02 0.005 23.8 9.0 88 96-207 2-92 (297)
10 PRK14752 delta-hemolysin; Prov 39.0 36 0.00078 22.1 2.5 37 169-211 5-41 (44)
11 PF05372 Delta_lysin: Delta ly 37.3 59 0.0013 18.9 2.9 21 191-211 3-23 (25)
12 cd04390 RhoGAP_ARHGAP22_24_25 34.6 2.8E+02 0.006 23.3 11.7 19 194-212 181-199 (199)
13 KOG2573 Ribosome biogenesis pr 34.3 1E+02 0.0022 30.0 5.8 78 68-149 69-146 (498)
14 TIGR03248 galactar-dH20 galact 32.7 81 0.0018 31.3 5.1 49 159-221 305-353 (507)
15 cd00801 INT_P4 Bacteriophage P 27.3 2.9E+02 0.0063 24.1 7.4 88 95-208 68-155 (357)
16 PF10047 DUF2281: Protein of u 27.2 1E+02 0.0022 21.7 3.6 28 168-208 4-31 (66)
17 PF04295 GD_AH_C: D-galactarat 25.5 1.4E+02 0.0031 28.6 5.3 49 159-221 196-244 (396)
18 PF08822 DUF1804: Protein of u 25.3 2.4E+02 0.0053 23.8 6.1 112 78-207 46-164 (165)
19 KOG4645 MAPKKK (MAP kinase kin 25.2 5.3E+02 0.012 29.0 9.8 65 89-153 606-695 (1509)
20 cd04392 RhoGAP_ARHGAP19 RhoGAP 24.2 84 0.0018 27.0 3.2 30 184-213 168-197 (208)
21 KOG1556 26S proteasome regulat 20.6 1E+02 0.0023 28.0 3.1 44 163-206 170-215 (309)
22 TIGR00135 gatC glutamyl-tRNA(G 20.6 1.7E+02 0.0037 21.6 3.9 27 180-206 12-38 (93)
No 1
>PF05712 MRG: MRG; InterPro: IPR008676 This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). It is thought that the MRG family is involved in transcriptional regulation via histone acetylation [, ].; GO: 0005634 nucleus; PDB: 2AQL_A 2F5J_A 2LKM_B 2Y0N_D.
Probab=100.00 E-value=4.8e-51 Score=348.51 Aligned_cols=171 Identities=49% Similarity=0.813 Sum_probs=126.7
Q ss_pred cccCCCCCCCCCcccccccccceEeeCChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccC--Ccc---
Q 026878 44 AKGKKRKSDSGTEKDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKD--GMM--- 118 (231)
Q Consensus 44 ~r~~kr~~~~~~e~~~~~~~~~i~i~iP~~Lk~~LvdD~e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~~--~~~--- 118 (231)
+||+||++++ +++.....++++|.||..||.+|||||++|+++++|++|||++||++||++|+++..... ...
T Consensus 4 ~~~~~~~~~~--~~~~~~~~~~~~i~lP~~Lk~~LvdD~~~I~~~~~l~~LP~~~~V~~IL~~y~~~~~~~~~~~~~~~~ 81 (194)
T PF05712_consen 4 ARGKKRRRSS--SEDDSEEEPEIKIELPEELKKILVDDWELITKEKKLVKLPAKPSVDDILEDYVESFADSDDSEEESAE 81 (194)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHTS-EEE-SS-SSBHHHHHHHHHHHHHHCHCSS---TH
T ss_pred cccCCCCCcc--cccccccCceEEEECCHHHHHHHHHHHHHHHcCCceeeCCCCCCHHHHHHHHHHHHhhcccCcchhHH
Confidence 4666666654 234557888999999999999999999999999999999999999999999999987432 111
Q ss_pred --hhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhC------------CCCCccccchhHHHHHHhhhhHHhccCC
Q 026878 119 --TDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVD------------NVSPSTIYGAEHLLRLFVKLPELLAYVN 184 (231)
Q Consensus 119 --~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~------------~~~pS~iYGa~HLLRLfvkLPell~~t~ 184 (231)
...+.|++.||+.|||++||.+|||++||+||.+++.. +.+||++||++|||||||+||+||+.++
T Consensus 82 ~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~Er~Qy~~~~~~~~~~~~~~~~~~~~~ps~~YG~~HLLRL~vkLPell~~~~ 161 (194)
T PF05712_consen 82 QERDLLKEVADGLRDYFNKALGSQLLYKFERPQYDELLKKHATRDDSPPDEPGFRPSDIYGAIHLLRLFVKLPELLSSTN 161 (194)
T ss_dssp H--HHHHHHHHHHHHHHHHHCCCCTS-GGGHHHHHHHHHHS---------STTS-HHHC-BHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHhcccchhccccCCCCCHHhhccHHHHHHHHHHHHHHHhhCC
Confidence 14689999999999999999999999999999999754 3599999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccC
Q 026878 185 IEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAY 216 (231)
Q Consensus 185 ~d~~~~~~l~~~l~~fL~fL~~n~~~~F~-~dY 216 (231)
|++++++.|..++.+||+||++|.+.||. ++|
T Consensus 162 ~~~~~~~~l~~~l~~fl~fL~~n~~~~f~~~~y 194 (194)
T PF05712_consen 162 MDEESINILLEHLQDFLKFLEKNSEEYFSEEDY 194 (194)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHTHHHHS-GGGE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 99999999999999999999999999999 666
No 2
>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.9e-35 Score=273.06 Aligned_cols=172 Identities=40% Similarity=0.658 Sum_probs=150.5
Q ss_pred ccccccccceEeeCChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccC--Cc-chhhHHHHHHHHHHHH
Q 026878 57 KDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKD--GM-MTDSIGEILKGIRCYF 133 (231)
Q Consensus 57 ~~~~~~~~~i~i~iP~~Lk~~LvdD~e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~~--~~-~~~~~~Ev~~Gl~~YF 133 (231)
...+...+++.+.||..|+.+|+|||+.|++..+++.+|+.++|+.|+..|........ +. ....+.+...|++.||
T Consensus 211 ~~~~~~~~~v~~~l~~~~~~~l~dd~~~vt~~~~~~~~~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~yf 290 (391)
T KOG3001|consen 211 PPTLPATVEVKLSLPQELKRSLVDDWDSVTEVDSLAELPQDVTVEQILKKYGFSEKKASGLSNSKEPEVLEVAAGLKRYF 290 (391)
T ss_pred CCCCCccccccccCchhhcccccchhhhhhhhhhhhcccCCchhhhhhhhhhHhhhhccccccccccccccccccceeee
Confidence 44455677899999999999999999999999999999999999999999987765332 11 1122344458999999
Q ss_pred HHhCCccCCChhhHhhHHHhhhCCC---CCccccchhHHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHchhh
Q 026878 134 DKALPVMLLYKKERQQYHDLVVDNV---SPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQST 210 (231)
Q Consensus 134 n~~L~~~LLY~~ER~QY~~~~~~~~---~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n~~~ 210 (231)
|.+||.+|||++||.||.++..+.. +||++|||+|||||||+||+||.+++|++++++.|..++++|++||.+|...
T Consensus 291 n~~lG~~llyk~Er~qy~~~~~~~~~Ds~~s~vyGa~HLlRLfvKLpe~l~~~~~~~~~l~~Ll~~~~~flk~L~~~~~~ 370 (391)
T KOG3001|consen 291 NGQLGVMLLYKFERLQYAEVVAKYPKDSPPSNVYGAEHLLRLFVKLPEILKYTPMDEKSLALLLRHRKDFLKYLRKNSAS 370 (391)
T ss_pred cccchhhhhhhhhhHHHHHHHhcCCCCCCcccchhHHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999984322 4999999999999999999999999999999999999999999999999977
Q ss_pred hcc-ccCCCCChhhhhccC
Q 026878 211 FFL-SAYDGSRVSEGKGKG 228 (231)
Q Consensus 211 ~F~-~dY~~~~~eY~~~~~ 228 (231)
||. ++|.+++++|.+.+-
T Consensus 371 ~f~~s~y~~~~~e~~~~~~ 389 (391)
T KOG3001|consen 371 FFSSSDYSNASPEYSSSSL 389 (391)
T ss_pred cccccchhhhchhhhhccc
Confidence 777 999999999998764
No 3
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=62.37 E-value=93 Score=26.06 Aligned_cols=137 Identities=14% Similarity=0.217 Sum_probs=66.4
Q ss_pred eCChhHHHHHHHHHH-HhhhCCceeeCCCCCC-HHHHHHHHHHhhhccCCcch-hhHHHHHHHHHHHHHHhCCccCCChh
Q 026878 69 QIPSTLKKQLVDDWE-FVNQQDKLVKLPRLPN-VDDILTKYLQYRSKKDGMMT-DSIGEILKGIRCYFDKALPVMLLYKK 145 (231)
Q Consensus 69 ~iP~~Lk~~LvdD~e-~Vtk~~~L~~LP~~~t-V~~IL~~Y~~~~~~~~~~~~-~~~~Ev~~Gl~~YFn~~L~~~LLY~~ 145 (231)
.+|..|..++..=+. .+.. --++++|...+ |+++.+.|-..... .... .-...++..|+.||... +.-|+-.
T Consensus 22 ~iP~il~~~i~~l~~~g~~~-eGIFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~va~~LK~~lr~L-p~pLi~~- 96 (195)
T cd04404 22 PIPPVVRETVEYLQAHALTT-EGIFRRSANTQVVKEVQQKYNMGEPV--DFDQYEDVHLPAVILKTFLREL-PEPLLTF- 96 (195)
T ss_pred CCChHHHHHHHHHHHcCCCC-CCeeeCCCcHHHHHHHHHHHhCCCCC--CcccccCHHHHHHHHHHHHHhC-CCccCCH-
Confidence 578777655322111 1222 24788887654 44444444321111 1111 12334555688888754 4444421
Q ss_pred hHhhHHHhhh-----------------CCCCCccccchhHHHHHHhhhhHHhccCCCCHHHHHH----------------
Q 026878 146 ERQQYHDLVV-----------------DNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIR---------------- 192 (231)
Q Consensus 146 ER~QY~~~~~-----------------~~~~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~~---------------- 192 (231)
| .|..+.. ..-++....=..+|+++|.++-.--....|+.+.+..
T Consensus 97 ~--~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~l 174 (195)
T cd04404 97 D--LYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAKDASMSL 174 (195)
T ss_pred H--HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeeeccccCCCCcccCH
Confidence 1 1222210 1224444444566666666544322233455444432
Q ss_pred -HHHHHHHHHHHHHHchhhhc
Q 026878 193 -LQQKMIDFLKFMQKNQSTFF 212 (231)
Q Consensus 193 -l~~~l~~fL~fL~~n~~~~F 212 (231)
=...++.|+.||-+|.+..|
T Consensus 175 ~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 175 SAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred HHHHHHHHHHHHHHHhHHhhC
Confidence 12346789999999988876
No 4
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=54.54 E-value=70 Score=22.19 Aligned_cols=82 Identities=16% Similarity=0.309 Sum_probs=44.5
Q ss_pred HHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhCCCCCccccchhHHHHHHhhhhHHhccC
Q 026878 104 LTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYV 183 (231)
Q Consensus 104 L~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~~~~pS~iYGa~HLLRLfvkLPell~~t 183 (231)
|++|..+.....+.....+......|+.+++.+-.. ....+.++ ...|+...+. -+...
T Consensus 1 i~~f~~~l~~~~~ls~~T~~~Y~~~l~~f~~~~~~~----------------~~~~~~~i-~~~~v~~f~~----~~~~~ 59 (84)
T PF02899_consen 1 IERFLRYLEQERGLSPNTIRSYRRDLRRFIRWLEEH----------------GIIDWEDI-TEEDVRDFLE----YLAKE 59 (84)
T ss_dssp HHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHT----------------TS-CGGG---HHHHHHHHH----HHHCT
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHHHhhhhh----------------hhhhhhhh-hhHHHHHHHH----HHHcc
Confidence 567888876544434444555555555554432210 11123333 3444444333 23444
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 026878 184 NIEDETLIRLQQKMIDFLKFMQK 206 (231)
Q Consensus 184 ~~d~~~~~~l~~~l~~fL~fL~~ 206 (231)
...+.+++.....|..|.+|+.+
T Consensus 60 ~~s~~T~~~~~~alr~f~~~l~~ 82 (84)
T PF02899_consen 60 GLSPSTINRRLSALRAFFRFLYR 82 (84)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999975
No 5
>PF13495 Phage_int_SAM_4: Phage integrase, N-terminal SAM-like domain; PDB: 2A3V_A.
Probab=50.68 E-value=27 Score=24.64 Aligned_cols=45 Identities=27% Similarity=0.500 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCc
Q 026878 94 LPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPV 139 (231)
Q Consensus 94 LP~~~tV~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~ 139 (231)
-|...|.++| ++|+.+.....+-....+.-.+.+|+.+|+.+++.
T Consensus 37 ~~~~it~~~i-~~y~~~l~~~~~~s~~T~~~~~~~l~~ff~~~~~~ 81 (85)
T PF13495_consen 37 PPDEITPEDI-EQYLNYLQNERGLSPSTINQYLSALRSFFRWLLER 81 (85)
T ss_dssp -GGG--HHHH-HHHHHHHHTTT---HHHHHHHHHHHHHHHHCTSS-
T ss_pred ccchhHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 3566777776 78988887443344556777899999999998764
No 6
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=43.83 E-value=17 Score=28.18 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=16.5
Q ss_pred eeeCCCCCCHHHHHHHHHHhh
Q 026878 91 LVKLPRLPNVDDILTKYLQYR 111 (231)
Q Consensus 91 L~~LP~~~tV~~IL~~Y~~~~ 111 (231)
|..=|..|||++||+|-....
T Consensus 7 LPtRP~PPTvEqILEDv~~A~ 27 (97)
T PF15136_consen 7 LPTRPEPPTVEQILEDVRGAP 27 (97)
T ss_pred CCCCCCCCCHHHHHHHHhcCC
Confidence 445578899999999987653
No 7
>PF11390 FdsD: NADH-dependant formate dehydrogenase delta subunit FdsD; InterPro: IPR021074 FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits []. The delta subunit is not involved in the active centre of the enzyme [].
Probab=40.37 E-value=43 Score=23.63 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=28.0
Q ss_pred HHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHH
Q 026878 168 HLLRLFVKLPELLAYVNIEDETLIRLQQKMIDF 200 (231)
Q Consensus 168 HLLRLfvkLPell~~t~~d~~~~~~l~~~l~~f 200 (231)
||.||--.+...+...+-.++.+..+..||+.|
T Consensus 1 ~LI~MANQIa~ff~~~p~~~~a~~~va~Hi~kF 33 (61)
T PF11390_consen 1 KLIKMANQIAAFFESYPPEEEAVEGVANHIKKF 33 (61)
T ss_pred CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 688888888888888877888888888888876
No 8
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=39.71 E-value=2.3e+02 Score=23.76 Aligned_cols=143 Identities=11% Similarity=0.145 Sum_probs=67.1
Q ss_pred eCChhHHHHHHH-HHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhhH
Q 026878 69 QIPSTLKKQLVD-DWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKER 147 (231)
Q Consensus 69 ~iP~~Lk~~Lvd-D~e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER 147 (231)
.+|..+..++.. +....... -++++|...+.-+-+....+.....+ -.......++..|+.||...=. -|+=...-
T Consensus 14 ~vP~~i~~~i~~l~~~g~~~e-GiFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~~~~va~~lK~flreLpe-pLi~~~~~ 90 (192)
T cd04402 14 NLPKPILDMLSLLYQKGPSTE-GIFRRSANAKACKELKEKLNSGVEVD-LKAEPVLLLASVLKDFLRNIPG-SLLSSDLY 90 (192)
T ss_pred CCCHHHHHHHHHHHHhCCCCC-CeeeCCCcHHHHHHHHHHHhCCCCCC-CccCCHHHHHHHHHHHHHhCCC-ccCCHHHH
Confidence 477766654432 11112222 37888877663333333333221111 1112234566667777765433 33321111
Q ss_pred hh----------------HHHhhhCCCCCccccchhHHHHHHhhhhHHhccCCCCHHHHH------------------HH
Q 026878 148 QQ----------------YHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLI------------------RL 193 (231)
Q Consensus 148 ~Q----------------Y~~~~~~~~~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~------------------~l 193 (231)
.. +.+++ ...+.+...=..||+++|.++-.-=....|+...+. .-
T Consensus 91 ~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~~~~~~~~~~~~ 169 (192)
T cd04402 91 EEWMSALDQENEEEKIAELQRLL-DKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASSELQNED 169 (192)
T ss_pred HHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccCCCCccHHHHHH
Confidence 11 11111 112344444445666666554332222344433332 11
Q ss_pred HHHHHHHHHHHHHchhhhcccc
Q 026878 194 QQKMIDFLKFMQKNQSTFFLSA 215 (231)
Q Consensus 194 ~~~l~~fL~fL~~n~~~~F~~d 215 (231)
...+..++.||-.|.+..|..|
T Consensus 170 ~~~~~~~~~~LI~~~~~IF~~~ 191 (192)
T cd04402 170 LKKVTSLVQFLIENCQEIFGED 191 (192)
T ss_pred HHhhhHHHHHHHHhHHHhCCCC
Confidence 2457889999999999998754
No 9
>PRK00236 xerC site-specific tyrosine recombinase XerC; Reviewed
Probab=39.39 E-value=2.3e+02 Score=23.78 Aligned_cols=88 Identities=13% Similarity=0.267 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHhhhccCCcchhhHHH---HHHHHHHHHHHhCCccCCChhhHhhHHHhhhCCCCCccccchhHHHHH
Q 026878 96 RLPNVDDILTKYLQYRSKKDGMMTDSIGE---ILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRL 172 (231)
Q Consensus 96 ~~~tV~~IL~~Y~~~~~~~~~~~~~~~~E---v~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~~~~pS~iYGa~HLLRL 172 (231)
+.+|+.+++++|+++.............. .+.-+..|+...-+ . ..+++ ...|+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~s~~T~~~~~~~~~~~~~~~~~~~~----~---------------~~~~i-~~~~i~~~ 61 (297)
T PRK00236 2 ADADLPAALEAFLEYLRVERGLSPHTLRAYRRDLRAFLAFLEEHGI----S---------------SLQDL-DAADLRSF 61 (297)
T ss_pred CCchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCC----C---------------chhhC-CHHHHHHH
Confidence 45799999999999875432112222222 33334444443211 0 01111 23344443
Q ss_pred HhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 026878 173 FVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 207 (231)
Q Consensus 173 fvkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n 207 (231)
+-.+-+ ..+...+++.....|..|++|+.++
T Consensus 62 ~~~~~~----~~~~~~t~~~~~~~l~~~~~~a~~~ 92 (297)
T PRK00236 62 LARRRR----QGLSARSLARRLSALRSFYRWLVRR 92 (297)
T ss_pred HHHHHh----cccChhHHHHHHHHHHHHHHHHHhc
Confidence 333221 2445667788888999999998876
No 10
>PRK14752 delta-hemolysin; Provisional
Probab=39.00 E-value=36 Score=22.07 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=25.9
Q ss_pred HHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHchhhh
Q 026878 169 LLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTF 211 (231)
Q Consensus 169 LLRLfvkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n~~~~ 211 (231)
.||.|.-+.+=.-. +...+...+.+|++|+-+...+|
T Consensus 5 ilrifilikegvis------ma~dii~tig~~vk~ii~tv~kf 41 (44)
T PRK14752 5 ILRIFILIKEGVIS------MAQDIISTIGDLVKWIIDTVNKF 41 (44)
T ss_pred HHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888766553222 22357888999999999887765
No 11
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=37.27 E-value=59 Score=18.86 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHchhhh
Q 026878 191 IRLQQKMIDFLKFMQKNQSTF 211 (231)
Q Consensus 191 ~~l~~~l~~fL~fL~~n~~~~ 211 (231)
.-|...+.+|++|+.+...+|
T Consensus 3 ~DIisTIgdfvKlI~~TV~KF 23 (25)
T PF05372_consen 3 ADIISTIGDFVKLIIETVKKF 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 346788999999999887766
No 12
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=34.58 E-value=2.8e+02 Score=23.28 Aligned_cols=19 Identities=11% Similarity=0.380 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHchhhhc
Q 026878 194 QQKMIDFLKFMQKNQSTFF 212 (231)
Q Consensus 194 ~~~l~~fL~fL~~n~~~~F 212 (231)
...++.++++|-+|.+.+|
T Consensus 181 ~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 181 TPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred cHHHHHHHHHHHHhhhhcC
Confidence 4456778888888877766
No 13
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=34.35 E-value=1e+02 Score=29.99 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=49.0
Q ss_pred eeCChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhhH
Q 026878 68 IQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKER 147 (231)
Q Consensus 68 i~iP~~Lk~~LvdD~e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER 147 (231)
=.+++.|+..|...+--+.+.+...-+--..=-..|-+.+-... -.....+.|++.|+|..|++.+...==|..|+
T Consensus 69 G~~~edLr~fLe~nlpK~kkkk~sLgi~d~kLg~~i~E~~~~i~----c~~~~~~~ellRGvR~hf~kl~K~L~~~d~~k 144 (498)
T KOG2573|consen 69 GVVHEDLRSFLELNLPKVKKKKVSLGIGDSKLGISIKEAFPKIP----CQSNEVVQELLRGVRKHFDKLMKGLDPGDLEK 144 (498)
T ss_pred ccccHHHHHHHHhhChhhhcCceeeccCcchhhhHHHhhccCcc----cccchhHHHHHHHHHHHHHHHHccCCCccHHH
Confidence 35788999999887665533332222222111223333331110 12335788999999999999998888899999
Q ss_pred hh
Q 026878 148 QQ 149 (231)
Q Consensus 148 ~Q 149 (231)
.|
T Consensus 145 aq 146 (498)
T KOG2573|consen 145 AQ 146 (498)
T ss_pred HH
Confidence 98
No 14
>TIGR03248 galactar-dH20 galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0714).
Probab=32.68 E-value=81 Score=31.26 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=34.8
Q ss_pred CCccccchhHHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHchhhhccccCCCCCh
Q 026878 159 SPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSRV 221 (231)
Q Consensus 159 ~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n~~~~F~~dY~~~~~ 221 (231)
.-.++||+||+|-== -.+++....|...++.|-+|...+-..+ |.++||
T Consensus 305 Et~E~~GaE~iL~~R----------a~~~ev~~k~~~~i~~~~~y~~~~g~~~----~~nPSp 353 (507)
T TIGR03248 305 EVTEVRDAIHLLTPR----------AETAEVAKALVREMDWYDRYLARGQADR----SANTTP 353 (507)
T ss_pred CCcceeChHHHHHhh----------hCCHHHHHHHHHHHHHHHHHHHHcCCCc----cCCCCc
Confidence 678899999987432 3466677778888888888877765543 556655
No 15
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=27.34 E-value=2.9e+02 Score=24.13 Aligned_cols=88 Identities=10% Similarity=0.100 Sum_probs=48.4
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhCCCCCccccchhHHHHHHh
Q 026878 95 PRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFV 174 (231)
Q Consensus 95 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~~~~pS~iYGa~HLLRLfv 174 (231)
+...|+.++++.|++...... ...........+..++...+|..-|-.. -..|+.+++.
T Consensus 68 ~~~~t~~~~~~~y~~~~~~~~--~~~t~~~~~~~~~~~l~~~~g~~~l~~i-------------------~~~~~~~~~~ 126 (357)
T cd00801 68 SAANTFAEVAEEWLAAKKPRW--SEKHARQWRRTLEKHVLPVLGKKPITEI-------------------TARDLLDVLR 126 (357)
T ss_pred hhhhHHHHHHHHHHHHhhccC--ChhHHHHHHHHHHhhcchhhcCCCHHHc-------------------CHHHHHHHHH
Confidence 455899999999998875311 1111222222233333333333222221 2344445544
Q ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHch
Q 026878 175 KLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQ 208 (231)
Q Consensus 175 kLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n~ 208 (231)
.+..- ..+.+++.....|..|+.|+.++.
T Consensus 127 ~~~~~-----~~~~t~~~~~~~l~~~~~~a~~~g 155 (357)
T cd00801 127 RIEAR-----GALETARRVRQRLKQVFRYAIARG 155 (357)
T ss_pred HHHHc-----CCHHHHHHHHHHHHHHHHHHHHcC
Confidence 44321 126788999999999999998763
No 16
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=27.16 E-value=1e+02 Score=21.72 Aligned_cols=28 Identities=39% Similarity=0.748 Sum_probs=20.4
Q ss_pred HHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHch
Q 026878 168 HLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQ 208 (231)
Q Consensus 168 HLLRLfvkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n~ 208 (231)
-|+.-+-.||+ .++..+-+|++||....
T Consensus 4 ~l~~~i~~LP~-------------~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 4 ELLEKIQQLPE-------------ELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHHHHHHHCCH-------------HHHHHHHHHHHHHHHhc
Confidence 45566666776 56788999999997544
No 17
>PF04295 GD_AH_C: D-galactarate dehydratase / Altronate hydrolase, C terminus; InterPro: IPR007392 This domain is found at the C terminus of D-galactarate dehydratase (4.2.1.42 from EC) which is thought to catalyse the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, [] and altronate hydrolase (altronic acid hydratase, 4.2.1.7 from EC), which catalyses D-altronate = 2-keto-2-deoxygluconate + H2O []. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core []. The N-terminal is represented by IPR007389 from INTERPRO.; GO: 0016836 hydro-lyase activity
Probab=25.54 E-value=1.4e+02 Score=28.61 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=34.0
Q ss_pred CCccccchhHHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHchhhhccccCCCCCh
Q 026878 159 SPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSRV 221 (231)
Q Consensus 159 ~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n~~~~F~~dY~~~~~ 221 (231)
.-.++||+||+|-== -.+++....|...++.|-+|+..+-..+ |.+++|
T Consensus 196 Et~El~GaE~~l~~R----------a~~~ev~~k~~~~i~~~~~~~~~~g~~~----~~nPSp 244 (396)
T PF04295_consen 196 ETPELIGAEHILARR----------AVNPEVADKILALINWFEDYAKSHGQDI----GGNPSP 244 (396)
T ss_pred cCccccCHHHHHHHH----------hCCHHHHHHHHHHHHHHHHHHHHhCCCc----CCCcCC
Confidence 678999999987322 2466677778888888888877665544 455554
No 18
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.33 E-value=2.4e+02 Score=23.81 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=54.6
Q ss_pred HHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhcc------C-CcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhH
Q 026878 78 LVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKK------D-GMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQY 150 (231)
Q Consensus 78 LvdD~e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~------~-~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY 150 (231)
-.|||+.+.--+.|.-==-.-...++|.+|+...... + ......-.+++..|-+-|+++....
T Consensus 46 ~GDDWDk~RaA~~laggg~e~v~~~~l~~f~~Q~~~tmeel~~~~~~~~~~k~~~LasLaDsf~K~vaas---------- 115 (165)
T PF08822_consen 46 KGDDWDKARAAHTLAGGGIEDVARQMLEDFVVQYQATMEELKENEDMPPQEKVELLASLADSFSKMVAAS---------- 115 (165)
T ss_pred cCCcHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3589988743333322111233456677777544321 1 1222334577888999999876542
Q ss_pred HHhhhCCCCCccccchhHHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 026878 151 HDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 207 (231)
Q Consensus 151 ~~~~~~~~~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n 207 (231)
+.-.-+++...=-++.+-.|-+++..- .++.+..+.+.|..|=.-|+++
T Consensus 116 ------kr~lPets~LavA~~vl~~l~~fv~e~--~P~h~~af~eiLepFg~~l~k~ 164 (165)
T PF08822_consen 116 ------KRVLPETSELAVAMEVLELLAAFVQER--YPQHLAAFLEILEPFGEELEKA 164 (165)
T ss_pred ------hhcCchHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc
Confidence 111223333333334444444443322 2344555566666665555543
No 19
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=25.23 E-value=5.3e+02 Score=29.04 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=45.0
Q ss_pred CceeeCCCCCCHHHHHHHHHHhhhccC--------------------CcchhhHHHHHHHHHHHHHHh-----CCccCCC
Q 026878 89 DKLVKLPRLPNVDDILTKYLQYRSKKD--------------------GMMTDSIGEILKGIRCYFDKA-----LPVMLLY 143 (231)
Q Consensus 89 ~~L~~LP~~~tV~~IL~~Y~~~~~~~~--------------------~~~~~~~~Ev~~Gl~~YFn~~-----L~~~LLY 143 (231)
.+...-|.-.+||+.+.||..+..... ......-.-++++|+.|||-. =|.-+||
T Consensus 606 a~~i~~pSl~tIdqmlddfr~~ik~av~~kq~~~~l~s~~~d~~~~v~~d~~f~n~Lv~~l~~yF~ll~lki~~~~~~l~ 685 (1509)
T KOG4645|consen 606 ARKITNPSLLTIDQMLDDFKEFIKVAVQMKQYQFTLASPCEDLSKPVDNDPAFENTLVKSLKFYFDLLRLKILQGLKQLF 685 (1509)
T ss_pred ccccCCCcceeHHHHHHHHHHHHHHHHHHhhhheeeecccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccchhcc
Confidence 344566888999999999998875321 112223356799999999954 3566788
Q ss_pred hhhHhhHHHh
Q 026878 144 KKERQQYHDL 153 (231)
Q Consensus 144 ~~ER~QY~~~ 153 (231)
..|+.+-.+.
T Consensus 686 ~~~~dlLe~e 695 (1509)
T KOG4645|consen 686 FKEPDLLEEE 695 (1509)
T ss_pred chhHHHHHHH
Confidence 8887765543
No 20
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.24 E-value=84 Score=27.00 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHchhhhcc
Q 026878 184 NIEDETLIRLQQKMIDFLKFMQKNQSTFFL 213 (231)
Q Consensus 184 ~~d~~~~~~l~~~l~~fL~fL~~n~~~~F~ 213 (231)
..+...+..-...+..++.||-+|.+++|.
T Consensus 168 ~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~ 197 (208)
T cd04392 168 NLTPEDLHENAQKLNSIVTFMIKHSQKLFK 197 (208)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444333345678999999999999998
No 21
>KOG1556 consensus 26S proteasome regulatory complex, subunit RPN8/PSMD7 [Posttranslational modification, protein turnover, chaperones]
Probab=20.59 E-value=1e+02 Score=27.98 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=23.7
Q ss_pred ccchhHHHHHHhh--hhHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Q 026878 163 IYGAEHLLRLFVK--LPELLAYVNIEDETLIRLQQKMIDFLKFMQK 206 (231)
Q Consensus 163 iYGa~HLLRLfvk--LPell~~t~~d~~~~~~l~~~l~~fL~fL~~ 206 (231)
--|++||||=+-- ...|-...+---.++.-|...+.+.-.||.+
T Consensus 170 EvGVEHLlRDikd~t~gtla~rit~ql~sLkgl~~~L~eI~~YL~~ 215 (309)
T KOG1556|consen 170 EVGVEHLLRDIKDTTVGTLATRITNQLMSLKGLQSRLREIRSYLDK 215 (309)
T ss_pred HhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999997631 1111111111123445566667777777765
No 22
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=20.57 E-value=1.7e+02 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.1
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHH
Q 026878 180 LAYVNIEDETLIRLQQKMIDFLKFMQK 206 (231)
Q Consensus 180 l~~t~~d~~~~~~l~~~l~~fL~fL~~ 206 (231)
|+...++++.+..+...++.+++|+..
T Consensus 12 La~L~l~eee~~~~~~~l~~il~~~~~ 38 (93)
T TIGR00135 12 LARLELSEEEAESFAGDLDKILGFVEQ 38 (93)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999975
Done!