Query 026878
Match_columns 231
No_of_seqs 162 out of 332
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 00:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f5j_A Mortality factor 4-like 100.0 9.5E-57 3.2E-61 379.4 13.7 169 62-230 2-175 (181)
2 2y0n_A MALE-specific lethal 3 100.0 4.7E-54 1.6E-58 370.6 14.8 166 62-227 4-208 (211)
3 3nrw_A Phage integrase/site-sp 86.2 7.8 0.00027 28.0 11.2 90 95-207 4-93 (117)
4 2kkp_A Phage integrase; SAM-li 66.0 27 0.00092 24.3 7.4 88 95-207 4-92 (117)
5 2kd1_A DNA integration/recombi 62.2 26 0.0009 24.5 6.7 88 95-207 3-90 (118)
6 2kkv_A Integrase; protein stru 45.5 76 0.0026 22.2 8.9 86 95-207 4-89 (121)
7 2ee4_A RHO GTPase activating p 40.8 1.3E+02 0.0044 24.1 8.3 139 69-213 26-203 (209)
8 1dtc_A Acetyl-delta-toxin; NMR 31.1 38 0.0013 19.0 2.4 20 192-211 4-23 (26)
9 1use_A VAsp, vasodilator-stimu 29.9 86 0.0029 20.0 4.2 28 102-136 15-42 (45)
10 2kj8_A Putative prophage CPS-5 27.8 1.5E+02 0.0053 20.5 10.3 87 95-207 2-88 (118)
11 1pbw_A Rhogap domain, phosphat 22.4 3E+02 0.01 22.0 10.5 142 69-214 24-200 (216)
12 3byi_A RHO GTPase activating p 22.1 3E+02 0.01 21.9 12.4 146 68-215 33-214 (214)
13 3lys_A Prophage PI2 protein 01 21.9 2E+02 0.0068 19.7 10.5 87 95-207 3-89 (112)
14 2key_A Putative phage integras 21.3 2E+02 0.0067 19.5 8.6 25 183-207 68-92 (112)
15 2kj5_A Phage integrase; GFT PS 21.0 2E+02 0.007 19.5 6.4 37 166-207 53-89 (116)
16 3kfu_G Glutamyl-tRNA(Gln) amid 20.6 1.1E+02 0.0037 21.9 3.9 27 180-206 17-43 (92)
No 1
>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B
Probab=100.00 E-value=9.5e-57 Score=379.37 Aligned_cols=169 Identities=37% Similarity=0.643 Sum_probs=148.7
Q ss_pred cccceEeeCChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccCC--cchhhHHHHHHHHHHHHHHhCCc
Q 026878 62 VEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDG--MMTDSIGEILKGIRCYFDKALPV 139 (231)
Q Consensus 62 ~~~~i~i~iP~~Lk~~LvdD~e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~~~--~~~~~~~Ev~~Gl~~YFn~~L~~ 139 (231)
++++++|.||+.||.+|||||++||++++|++|||++||++||++|+++....+. ...+++.|+++||++|||++||.
T Consensus 2 ~~~~i~i~iP~~Lk~~LvdDw~~Itk~~~L~~LP~~~~V~~IL~~Y~~~~~~~~~~~~~~~~~~Ev~~Gl~~YFd~~L~~ 81 (181)
T 2f5j_A 2 NRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGT 81 (181)
T ss_dssp ----CCCCCCGGGHHHHHHHHHHHHTSCEEECSSCSSBHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCCHHHHHHHHHHHHHHHhCCCeeeCCCCCcHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHccc
Confidence 4678999999999999999999999999999999999999999999999876442 22357899999999999999999
Q ss_pred cCCChhhHhhHHHhhh--CCCCCccccchhHHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccC
Q 026878 140 MLLYKKERQQYHDLVV--DNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAY 216 (231)
Q Consensus 140 ~LLY~~ER~QY~~~~~--~~~~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n~~~~F~-~dY 216 (231)
+|||++||+||.++++ ++.+||++|||+|||||||+||+||+.++||+++++.|+.++.+||+||++|.++||. ++|
T Consensus 82 ~LLY~~ER~Qy~~ll~~~p~~~~S~iYGa~HLLRLfvkLPell~~t~~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y 161 (181)
T 2f5j_A 82 QLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDY 161 (181)
T ss_dssp HSCCGGGHHHHHHHHHHSTTCCHHHHCBHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGE
T ss_pred ccCcHHHHHHHHHHHHhCCCCCHHHHcCHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhc
Confidence 9999999999999985 3458999999999999999999999999999999999999999999999999999995 999
Q ss_pred CCCChhhhhccCCC
Q 026878 217 DGSRVSEGKGKGKD 230 (231)
Q Consensus 217 ~~~~~eY~~~~~~~ 230 (231)
++++|+|++.|.+.
T Consensus 162 ~~~~~eY~~~~~~~ 175 (181)
T 2f5j_A 162 EVAPPEYHRKAVLE 175 (181)
T ss_dssp EECCHHHHC-----
T ss_pred CCCCHHHHHHHhhh
Confidence 99999999998764
No 2
>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-54 Score=370.55 Aligned_cols=166 Identities=39% Similarity=0.613 Sum_probs=142.9
Q ss_pred cccceEeeCChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccC--------------------------
Q 026878 62 VEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKD-------------------------- 115 (231)
Q Consensus 62 ~~~~i~i~iP~~Lk~~LvdD~e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~~-------------------------- 115 (231)
.+++|+|.||+.||++|||||++||++++|++|||++||++||++|+++.....
T Consensus 4 ~~~~v~i~iP~~Lk~~LvdDw~~Itk~~kLv~LPa~~~V~~IL~~Y~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 83 (211)
T 2y0n_A 4 EERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPA 83 (211)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHHTSCCEECSSCSSCHHHHHHHHHHHHHHHHHSCC---------------------C
T ss_pred CCceeEEeCCHHHHHHHHHHHHHHhcCCceEeCCCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccccch
Confidence 457899999999999999999999999999999999999999999998864210
Q ss_pred CcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhC------------CCCCccccchhHHHHHHhhhhHHhccC
Q 026878 116 GMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVD------------NVSPSTIYGAEHLLRLFVKLPELLAYV 183 (231)
Q Consensus 116 ~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~------------~~~pS~iYGa~HLLRLfvkLPell~~t 183 (231)
....+.++|+++||++|||++||.+|||++||+||.+++.. +.+||++|||+|||||||+||+||+.+
T Consensus 84 ~~~~~~~~Ev~~GLr~YFd~~L~~~LLY~~ER~Qy~~~~~~~~~~~~~~~~~~~~~~S~iYGa~HLLRLfvkLPelL~~t 163 (211)
T 2y0n_A 84 EKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKM 163 (211)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHC--------CCSCCCCGGGTCCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhhcccCCcccccCCCCHHHHcCHHHHHHHHHHhHHHHhcC
Confidence 01235689999999999999999999999999999999842 358999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccCCCCChhhhhcc
Q 026878 184 NIEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAYDGSRVSEGKGK 227 (231)
Q Consensus 184 ~~d~~~~~~l~~~l~~fL~fL~~n~~~~F~-~dY~~~~~eY~~~~ 227 (231)
+||+++++.|+.++++||+||++|.++||. ++|++++++|++..
T Consensus 164 ~~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y~~~~~~~~~~~ 208 (211)
T 2y0n_A 164 SFSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYSTK 208 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGEECC--------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCChhccCCCCHHHHhhc
Confidence 999999999999999999999999999996 89999988887653
No 3
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=86.15 E-value=7.8 Score=28.01 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhCCCCCccccchhHHHHHHh
Q 026878 95 PRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFV 174 (231)
Q Consensus 95 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~~~~pS~iYGa~HLLRLfv 174 (231)
|...|+.+.+++|+++.. . +....-+......|+.+++.+-..-+ ..+++ -...++-+.+.
T Consensus 4 ~~~~t~~~~~~~fl~~l~-~-~~s~~Ti~~Y~~~l~~f~~~l~~~~~----------------~~l~~-it~~~i~~y~~ 64 (117)
T 3nrw_A 4 RPSLSPREARDRYLAHRQ-T-DAADASIKSFRYRLKHFVEWAEERDI----------------TAMRE-LTGWKLDEYET 64 (117)
T ss_dssp CCCCCHHHHHHHHHHHHT-T-TSCHHHHHHHHHHHHHHHHHHHHTTC----------------CSGGG-CCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHHcCC----------------CChHH-CCHHHHHHHHH
Confidence 677899999999999886 3 22333344444455555443210000 01111 13344555554
Q ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 026878 175 KLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 207 (231)
Q Consensus 175 kLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n 207 (231)
.|- ..++.+.+++.....|..|++|+.+.
T Consensus 65 ~l~----~~~~s~~Ti~~~ls~lr~f~~~l~~~ 93 (117)
T 3nrw_A 65 FRR----GSDVSPATLNGEMQTLKNWLEYLARI 93 (117)
T ss_dssp HHH----TSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----hCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 432 25689999999999999999999875
No 4
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=66.00 E-value=27 Score=24.27 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHhhhccC-CcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhCCCCCccccchhHHHHHH
Q 026878 95 PRLPNVDDILTKYLQYRSKKD-GMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLF 173 (231)
Q Consensus 95 P~~~tV~~IL~~Y~~~~~~~~-~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~~~~pS~iYGa~HLLRLf 173 (231)
|...|+.+++++|++...... +..+ +......++.||...+|..-+- + -...++.+++
T Consensus 4 ~~~~t~~~~~~~~l~~~~~~~~~~~T--~~~y~~~~~~~i~~~~g~~~l~------------------~-It~~~i~~~~ 62 (117)
T 2kkp_A 4 PSKITVEQWLNRWLTDYAKPHLRQST--WESYETVLRLHVIPTLGSIPLK------------------K-LQPADIQRLY 62 (117)
T ss_dssp SCCSCHHHHHHHHHHHHTSCCCSCCC--CSHHHHHHHHHHCCCCCTSCTT------------------T-CCHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHhccCCCccH--HHHHHHHHHHHhccccCceEHH------------------H-CCHHHHHHHH
Confidence 678899999999998742111 1111 1111223344444444433222 2 1344555555
Q ss_pred hhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 026878 174 VKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 207 (231)
Q Consensus 174 vkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n 207 (231)
..|- ...+.+.+++.....+..|++|..++
T Consensus 63 ~~l~----~~~~s~~t~~~~~~~l~~~~~~A~~~ 92 (117)
T 2kkp_A 63 ASKL----ESGLSPTRVRYIHVVLHEAMSQARES 92 (117)
T ss_dssp HHHH----HTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH----HcCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 5432 23567889999999999999998864
No 5
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=62.24 E-value=26 Score=24.48 Aligned_cols=88 Identities=8% Similarity=0.061 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhCCCCCccccchhHHHHHHh
Q 026878 95 PRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFV 174 (231)
Q Consensus 95 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~~~~pS~iYGa~HLLRLfv 174 (231)
|..+|+.+++++|++...... ....+......+..||...+|..- .+++ ...++.+++.
T Consensus 3 ~~~~t~~~~~~~~~~~~~~~~--~~~T~~~y~~~l~~~i~~~~g~~~------------------l~~i-t~~~i~~~~~ 61 (118)
T 2kd1_A 3 PSKLSYGEYLESWFNTKRHSV--GIQTAKVLKGYLNSRIIPSLGNIK------------------LAKL-TSLHMQNYVN 61 (118)
T ss_dssp CSCSBHHHHHHHHHHHHHHHH--CHHHHHHHHHHHTTTHHHHTTSSB------------------GGGC-CHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhhhHhhCcCC------------------HHhC-CHHHHHHHHH
Confidence 567899999999998643110 111122222233334444445322 2222 3445555555
Q ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 026878 175 KLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 207 (231)
Q Consensus 175 kLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n 207 (231)
.|- ...+...+++.....+..|++|..++
T Consensus 62 ~l~----~~g~s~~t~~~~~~~l~~~~~~a~~~ 90 (118)
T 2kd1_A 62 SLR----DEGLKRGTIEKIIKVIRNSLEHAIDL 90 (118)
T ss_dssp HHH----HHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HcCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 432 23467889999999999999999865
No 6
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=45.54 E-value=76 Score=22.24 Aligned_cols=86 Identities=15% Similarity=0.248 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhCCCCCccccchhHHHHHHh
Q 026878 95 PRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFV 174 (231)
Q Consensus 95 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~~~~pS~iYGa~HLLRLfv 174 (231)
+...|+.+++++|++.. .. .....+......+..|+...+|..-| +++ -..++..++.
T Consensus 4 ~~~~t~~~~~~~wl~~~-~~--~~~~T~~~y~~~l~~~i~~~~g~~~l------------------~~I-t~~~i~~~~~ 61 (121)
T 2kkv_A 4 SGAYTFETIAREWHESN-KR--WSEDHRSRVLRYLELYIFPHIGSSDI------------------RQL-KTSHLLAPIK 61 (121)
T ss_dssp CCCCSHHHHHHHHHTTC-CS--SCHHHHHHHHHHHHHHHSSSSTTSCT------------------TCC-CSGGGHHHHH
T ss_pred cccCcHHHHHHHHHHHc-CC--CCHHHHHHHHHHHHhhcCchhcCCCH------------------HHc-CHHHHHHHHH
Confidence 45689999999999876 21 11222222333444444444454322 111 2234444444
Q ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 026878 175 KLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 207 (231)
Q Consensus 175 kLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n 207 (231)
.|-. .....+++.+...|..|++|..++
T Consensus 62 ~l~~-----~~s~~t~~~~~~~l~~~~~~A~~~ 89 (121)
T 2kkv_A 62 EVDT-----SGKHDVAQRLQQRVTAIMRYAVQN 89 (121)
T ss_dssp HHHH-----TTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----cCCHHHHHHHHHHHHHHHHHHHHc
Confidence 4321 126778999999999999998864
No 7
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=40.77 E-value=1.3e+02 Score=24.14 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=71.1
Q ss_pred eCChhHHHHHHHHHHHhhhC----CceeeCCCCCC-HHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCC
Q 026878 69 QIPSTLKKQLVDDWEFVNQQ----DKLVKLPRLPN-VDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLY 143 (231)
Q Consensus 69 ~iP~~Lk~~LvdD~e~Vtk~----~~L~~LP~~~t-V~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY 143 (231)
.+|..+..++ ++|.+. --++++|...+ |.++.+.|-......-.....-+..++.-|+.||-. |+.-|+-
T Consensus 26 ~vP~iv~~~i----~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK~flre-LPePLi~ 100 (209)
T 2ee4_A 26 PIPLFVEKCV----EFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFAD-LPDPLIP 100 (209)
T ss_dssp CSCHHHHHHH----HHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHHHHHHH-SSSCSSC
T ss_pred CCChHHHHHH----HHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHh-CCCccCC
Confidence 5888776654 233332 24688887644 455555554322110000011234556667777775 4444432
Q ss_pred hh---------------hHhh-HHHhhhCCCCCccccchhHHHHHHhhhhHHhccCCCCHHHHHHHHH------------
Q 026878 144 KK---------------ERQQ-YHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQ------------ 195 (231)
Q Consensus 144 ~~---------------ER~Q-Y~~~~~~~~~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~~l~~------------ 195 (231)
.. ||.+ ...++ ..-++....=..+|+++|.++-.--....|+...+..+..
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf~P~L~~~~~~~~~ 179 (209)
T 2ee4_A 101 YSLHPELLEAAKIPDKTERLHALKEIV-KKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENRE 179 (209)
T ss_dssp TTTHHHHHHHHSCSSHHHHHHHHHHHT-TTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCCCCCSSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhcccccCCCCccHH
Confidence 11 2211 12222 2234444444556666666554433345577666654221
Q ss_pred ------HHHHHHHHHHHchhhhcc
Q 026878 196 ------KMIDFLKFMQKNQSTFFL 213 (231)
Q Consensus 196 ------~l~~fL~fL~~n~~~~F~ 213 (231)
....++++|-.|.+.+|.
T Consensus 180 ~l~~~~~~~~vve~LI~~~~~iF~ 203 (209)
T 2ee4_A 180 FLSTTKIHQSVVETFIQQCQFFFY 203 (209)
T ss_dssp CSCCCTTHHHHHHHHHHTHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHhhHHHcC
Confidence 346789999999999987
No 8
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=31.09 E-value=38 Score=18.97 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHchhhh
Q 026878 192 RLQQKMIDFLKFMQKNQSTF 211 (231)
Q Consensus 192 ~l~~~l~~fL~fL~~n~~~~ 211 (231)
-|...+.+|++|+.+...+|
T Consensus 4 DIisTIgdfvKlI~~TV~KF 23 (26)
T 1dtc_A 4 DIISTIGDLVKWIIDTVNKF 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999887766
No 9
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=29.89 E-value=86 Score=20.01 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHh
Q 026878 102 DILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKA 136 (231)
Q Consensus 102 ~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~ 136 (231)
+||+++..... ..-.|++++|+..|++.
T Consensus 15 EIL~E~RkElq-------K~K~EIIeAi~~El~~~ 42 (45)
T 1use_A 15 ELLEEVKKELQ-------KVKEEIIEAFVQELRKR 42 (45)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Confidence 56666665543 23468999999999974
No 10
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=27.84 E-value=1.5e+02 Score=20.52 Aligned_cols=87 Identities=8% Similarity=0.067 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhCCCCCccccchhHHHHHHh
Q 026878 95 PRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFV 174 (231)
Q Consensus 95 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~~~~pS~iYGa~HLLRLfv 174 (231)
+...|+.+++++|++...... ....+......+..|+-..+|..-| +++ -..|+.+++.
T Consensus 2 ~~~~t~~~~~~~wl~~~~~~~--~~~T~~~y~~~l~~~i~~~lg~~~l------------------~~I-t~~~i~~~~~ 60 (118)
T 2kj8_A 2 SNNNSFSAIYKEWYEHKKQVW--SVGYATELAKMFDDDILPIIGGLEI------------------QDI-EPMQLLEVIR 60 (118)
T ss_dssp CSTTBHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHHHTTSBT------------------TSC-CHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHcccC--CHHHHHHHHHHHHHHhhHHhcCCcH------------------HHC-CHHHHHHHHH
Confidence 345799999999998754211 1122222223344444333454322 222 3445555555
Q ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 026878 175 KLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 207 (231)
Q Consensus 175 kLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n 207 (231)
.|-+ .-...+++.+...|..|++|..++
T Consensus 61 ~l~~-----~~s~~t~~~~~~~l~~~~~~Av~~ 88 (118)
T 2kj8_A 61 RFED-----RGAMERANKARRRCGEVFRYAIVT 88 (118)
T ss_dssp HHHT-----TTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----cCCHHHHHHHHHHHHHHHHHHHHc
Confidence 4321 125678999999999999998764
No 11
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=22.41 E-value=3e+02 Score=22.04 Aligned_cols=142 Identities=13% Similarity=0.125 Sum_probs=69.1
Q ss_pred eCChhHHHHHHHHH-HHhhhCCceeeCCCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhhH
Q 026878 69 QIPSTLKKQLVDDW-EFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKER 147 (231)
Q Consensus 69 ~iP~~Lk~~LvdD~-e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER 147 (231)
.+|..+..++..=. .-+. .--|+++|...+. +-|.+-.+.-.....-...-+..++.-|+.||-. |+--|+-..--
T Consensus 24 ~vP~iv~~~i~~l~~~gl~-~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~lLK~flRe-LPePLl~~~ly 100 (216)
T 1pbw_A 24 IAPPLLIKLVEAIEKKGLE-CSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLD-LPNPVIPAAVY 100 (216)
T ss_dssp CSCHHHHHHHHHHHHHHTT-CTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHHHHHHHHT-SSSCSSCHHHH
T ss_pred CcCHHHHHHHHHHHHcCCC-CCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHHHHHHHHh-CCCCCCCHHHH
Confidence 47877766532100 1122 2348889888777 5555544332111111122345566667777754 55555432211
Q ss_pred hhHH-----------------HhhhC--CCCCccccchhHHHHHHhhhhHHhccCCCCHHHHHHHH--------------
Q 026878 148 QQYH-----------------DLVVD--NVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQ-------------- 194 (231)
Q Consensus 148 ~QY~-----------------~~~~~--~~~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~~l~-------------- 194 (231)
..+. .++ . .-++....=..+|+++|.++-+-=....|+...+..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~ll-~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~ 179 (216)
T 1pbw_A 101 SEMISLAPEVQSSEEYIQLLKKLI-RSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSDN 179 (216)
T ss_dssp HHHHHHGGGCCSHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHhhhcCCCCCCchhh
Confidence 1221 222 2 23333444445566666554443333456555544322
Q ss_pred -HHHHHHHHHHHHchhhhccc
Q 026878 195 -QKMIDFLKFMQKNQSTFFLS 214 (231)
Q Consensus 195 -~~l~~fL~fL~~n~~~~F~~ 214 (231)
.....++++|-+|.+.+|..
T Consensus 180 ~~~~~~vve~LI~~~~~iF~~ 200 (216)
T 1pbw_A 180 TENLIKVIEILISTEWNERQP 200 (216)
T ss_dssp HHHHHHHHHHHHHTTC-----
T ss_pred hHHHHHHHHHHHhhhHHhcCC
Confidence 56788999999999999984
No 12
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=22.05 E-value=3e+02 Score=21.92 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=66.7
Q ss_pred eeCChhHHHHHHHH-HHHhhhCCceeeCCCCCC-HHHHHHHHHHhhhccCCcc-hhhHHHHHHHHHHHHHHhCCccCCCh
Q 026878 68 IQIPSTLKKQLVDD-WEFVNQQDKLVKLPRLPN-VDDILTKYLQYRSKKDGMM-TDSIGEILKGIRCYFDKALPVMLLYK 144 (231)
Q Consensus 68 i~iP~~Lk~~LvdD-~e~Vtk~~~L~~LP~~~t-V~~IL~~Y~~~~~~~~~~~-~~~~~Ev~~Gl~~YFn~~L~~~LLY~ 144 (231)
-.+|..+..++..= ..-+. .--++++|...+ |.++.+.|-......-... ..-+..++.-|+.||-. |+.-|+-.
T Consensus 33 ~~vP~~v~~~i~~l~~~gl~-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flre-LPePLl~~ 110 (214)
T 3byi_A 33 STVPWFVKQCIEAVEKRGLD-VDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRE-LPEPLFPY 110 (214)
T ss_dssp CSSCHHHHHHHHHHHHHTTT-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHH-SSSCSSCH
T ss_pred CCCChHHHHHHHHHHHhCCC-CCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHh-CCCCCCCH
Confidence 35787776654210 01122 224788887543 4444444432211100111 11344556667777754 55555533
Q ss_pred hhHhhHHHhhh---------------CCCCCccccchhHHHHHHhhhhHHhccCCCCHHHHHHH----------------
Q 026878 145 KERQQYHDLVV---------------DNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRL---------------- 193 (231)
Q Consensus 145 ~ER~QY~~~~~---------------~~~~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~~l---------------- 193 (231)
.=-..+.++.. ..-++....=..+|+++|.++-.--....|+...+..+
T Consensus 111 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLa~vf~P~Ll~~~~~~~~~~ 190 (214)
T 3byi_A 111 SFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENETGNMA 190 (214)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHCCTTSSSCHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHHHhHHHhccccCCCCCccHHHH
Confidence 22222222221 11123333334455555554433222334554444321
Q ss_pred --HHHHHHHHHHHHHchhhhcccc
Q 026878 194 --QQKMIDFLKFMQKNQSTFFLSA 215 (231)
Q Consensus 194 --~~~l~~fL~fL~~n~~~~F~~d 215 (231)
......++.||-.|.+.+|.+|
T Consensus 191 ~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 191 IHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1245689999999999999753
No 13
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=21.85 E-value=2e+02 Score=19.73 Aligned_cols=87 Identities=8% Similarity=0.198 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhCCCCCccccchhHHHHHHh
Q 026878 95 PRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFV 174 (231)
Q Consensus 95 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~~~~pS~iYGa~HLLRLfv 174 (231)
|...|+.+++++|++...... .....+......++ ++-..+|..-|-...+ .++..++.
T Consensus 3 ~~~~Tf~~~~~~wl~~~~~~~-~~~~T~~~y~~~~~-~i~p~~g~~~l~~It~-------------------~~i~~~~~ 61 (112)
T 3lys_A 3 PIKQEISEYFKDWMELYKKNA-IDEMTYKGYEQTLK-YLKTYMPNVLISEITA-------------------SSYQRALN 61 (112)
T ss_dssp CCCSBHHHHHHHHHHHHTTTT-SCHHHHHHHHHHHH-HHHHHSSSCBTTTCCH-------------------HHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHccCC-CCHHHHHHHHHHHH-HHHHHhCCCCHHhCCH-------------------HHHHHHHH
Confidence 667899999999998643211 11112222222333 5555566544433333 33344444
Q ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 026878 175 KLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 207 (231)
Q Consensus 175 kLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n 207 (231)
.|- ......+++.+...+..+++|..++
T Consensus 62 ~l~-----~~~s~~t~~~~~~~l~~i~~~Av~~ 89 (112)
T 3lys_A 62 KFA-----ETHAKASTKGFHTRVRASIQCLIEE 89 (112)
T ss_dssp HHH-----TTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH-----HhccHHHHHHHHHHHHHHHHHHHHC
Confidence 332 2356788899999999999998864
No 14
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=21.33 E-value=2e+02 Score=19.48 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc
Q 026878 183 VNIEDETLIRLQQKMIDFLKFMQKN 207 (231)
Q Consensus 183 t~~d~~~~~~l~~~l~~fL~fL~~n 207 (231)
..+...+++.....|..|++|+.++
T Consensus 68 ~~~s~~Ti~~~~~~lr~~~~~a~~~ 92 (112)
T 2key_A 68 LCNADSTAQRNLSTIKIYVSAAIKK 92 (112)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHC
Confidence 4578889999999999999999865
No 15
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=20.96 E-value=2e+02 Score=19.49 Aligned_cols=37 Identities=5% Similarity=0.018 Sum_probs=26.1
Q ss_pred hhHHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 026878 166 AEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 207 (231)
Q Consensus 166 a~HLLRLfvkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n 207 (231)
..++.+++..|-. . ..+.+++.+...|..|++|..++
T Consensus 53 ~~~i~~~~~~l~~---~--~s~~t~~~~~~~l~~~~~~A~~~ 89 (116)
T 2kj5_A 53 PRHIDDVLKAVMK---R--GAPSIANDTLRWLKRMFNYAIKR 89 (116)
T ss_dssp HHHHHHHHHHHHH---H--TCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---c--cChHHHHHHHHHHHHHHHHHHHc
Confidence 3455555554422 1 26788999999999999998865
No 16
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=20.57 E-value=1.1e+02 Score=21.88 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.3
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHH
Q 026878 180 LAYVNIEDETLIRLQQKMIDFLKFMQK 206 (231)
Q Consensus 180 l~~t~~d~~~~~~l~~~l~~fL~fL~~ 206 (231)
|+...++++.+..+...++++|.|++.
T Consensus 17 LArL~l~eeE~~~~~~~l~~Il~~ve~ 43 (92)
T 3kfu_G 17 LAKIRLSPEEEALLLQDLKRILDFVDA 43 (92)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999985
Done!