BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026879
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K1Z|A Chain A, Crystal Structure Of Human Haloacid Dehalogenase-like
Hydrolase Domain Containing 3 (hdhd3)
Length = 263
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 56 DAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAA---PWPE-KLRYEGDGR 111
D TLL+L P+ E YA+ AR +GL V+ + +++GFR+A+ A +P L + R
Sbjct: 7 DVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSFPNYGLSHGLTSR 66
Query: 112 PFWRLVVSEA---TGCTNDDYF----EEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVA 164
+W VV + G + E++Y+ ++ W + GA ++ + G+++A
Sbjct: 67 QWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDTLRECRTRGLRLA 126
Query: 165 VVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAAL 209
V+SNFD RL +L L + + FD V+ S G KPDPRIF+ AL
Sbjct: 127 VISNFDRRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEAL 171
>pdb|2ZG6|A Chain A, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
pdb|2ZG6|B Chain B, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
Length = 220
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAA-PWPEKLRYEG 108
Y AVL+D G TL+ E + + G ++D + + + KA +P++ E
Sbjct: 3 YKAVLVDFGNTLVGFKPVFYEKVYQVLKDNGYDLDLRKVFRAYAKAXGXINYPDEDGLEH 62
Query: 109 -DGRPFW---------RLVVSEATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKD 158
D + F RLV D GEA+ L + + LK
Sbjct: 63 VDPKDFLYILGIYPSERLVKELKEADIRD------------GEAF-LYDDTLEFLEGLKS 109
Query: 159 AGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALG 210
G K+A+VSN R++ LL+ ++ FDA+ +S E+ KP+P+IF AL
Sbjct: 110 NGYKLALVSNASPRVKTLLEKFDLKKYFDALALSYEIKAVKPNPKIFGFALA 161
>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From
Ehrlichia Chaffeensis At 1.9a Resolution
Length = 231
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 130 FEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFD-TRLRKLLKDLNVIDLFDA 188
+E E K + + L GA + + LK+ + +A+VSN + RLR + N+ FD+
Sbjct: 89 YENSLEKSQKSDNFMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHYFDS 148
Query: 189 VVISSEVGCEKPDPRIFKAAL 209
++ S + G KP P AAL
Sbjct: 149 IIGSGDTGTIKPSPEPVLAAL 169
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 148 GAYQSILLLKDAGVKVAVVSNFD--TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIF 205
GA + ++ LK+ G ++ ++++ + + K+L+ L + D F+ V+IS G +KP P+IF
Sbjct: 98 GARKVLIRLKELGYELGIITDGNPVKQWEKILR-LELDDFFEHVIISDFEGVKKPHPKIF 156
Query: 206 KAAL 209
K AL
Sbjct: 157 KKAL 160
>pdb|4FFD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 163 VAVVSNFDT-RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAAL 209
V ++++ DT + L L + DLFD++ S E G KP PRIF+ AL
Sbjct: 118 VGMITDSDTEQAMAFLDALGIKDLFDSITTSEEAGFFKPHPRIFELAL 165
>pdb|1X42|A Chain A, Crystal Structure Of A Haloacid Dehalogenase Family
Protein (Ph0459) From Pyrococcus Horikoshii Ot3
Length = 232
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 163 VAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAAL 209
V +++ DT L L L + DLFD++ S E G KP PRIF+ AL
Sbjct: 118 VGXITDSDTEYLXAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELAL 165
>pdb|3U26|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 163 VAVVSNFDT-RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAAL 209
V +++ DT + L L + DLFD++ S E G KP PRIF+ AL
Sbjct: 118 VGXITDSDTEQAXAFLDALGIKDLFDSITTSEEAGFFKPHPRIFELAL 165
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 151 QSILLLKDAGVKVAVVSN--FDTR-----LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203
Q+ L+L+ G A+++N D R L +L+ +L + FD ++ S +VG KP+P+
Sbjct: 107 QAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKM--HFDFLIESCQVGMVKPEPQ 164
Query: 204 IFKAALGT 211
I+K L T
Sbjct: 165 IYKFLLDT 172
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 149 AYQSILLLKDAGVKVAVVSN-FDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKA 207
A +++ LK AG VA++SN D L+ LK + + D+ + + ++ KPDPRI++
Sbjct: 110 AAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQF 169
Query: 208 A 208
A
Sbjct: 170 A 170
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 149 AYQSILLLKDAGVKVAVVSN-FDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKA 207
A +++ LK AG VA++SN D L+ LK + + D+ + + ++ KPDPRI++
Sbjct: 110 AAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQF 169
Query: 208 A 208
A
Sbjct: 170 A 170
>pdb|3UM9|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
pdb|3UM9|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
Length = 230
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 151 QSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAAL 209
Q++ L+ AG+K A++SN +R+++ + + + FD ++ EV KP ++++ A+
Sbjct: 103 QALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNSFDHLISVDEVRLFKPHQKVYELAM 162
Query: 210 GTSEHG 215
T G
Sbjct: 163 DTLHLG 168
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 156 LKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAA 208
LK+ +K+ + S+ K+L+ L +ID F A+V + + KPDP IF A
Sbjct: 104 LKNENIKIGLASS-SRNAPKILRRLAIIDDFHAIVDPTTLAKGKPDPDIFLTA 155
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 156 LKDAGVKVAVVSN-FDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202
LK G K+AVVSN + +K+L LN+ FD +V G +KP P
Sbjct: 95 LKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGEKKPSP 142
>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Fragilis
Length = 225
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 122 TGCTNDDYFEEVYEYYAKGEAWH------LPHGAYQSILLLKDAGVKVAVVSN-FDTRLR 174
TG T+ D E + Y+K + L ++ LK G+++ ++S + R+
Sbjct: 61 TGITDADQLESFRQEYSKEADIYXNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRIL 120
Query: 175 KLLKDLNVIDLFDAVVISSEVGCEKPDP 202
L++ D FD ++ +V KPDP
Sbjct: 121 SFLRNHXPDDWFDIIIGGEDVTHHKPDP 148
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 156 LKDAGVKVAVVSN-FDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202
LK G K+AVVSN + +K+L LN+ FD +V G +KP P
Sbjct: 93 LKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGEKKPSP 140
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 14/163 (8%)
Query: 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGD 109
+ AVL D G + AE + ++A + G+N + + +K+ D
Sbjct: 2 FKAVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLAD 61
Query: 110 GRPFWRLVVSEATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSIL-LLKD---AGVKVAV 165
+ E ND+Y + + + P Y IL LLKD +K+A+
Sbjct: 62 -KKVSAEEFKELAKRKNDNYVKMIQDVS--------PADVYPGILQLLKDLRSNKIKIAL 112
Query: 166 VSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAA 208
S LL+ +N+ FDA+ +EV KP P IF AA
Sbjct: 113 ASA-SKNGPFLLERMNLTGYFDAIADPAEVAASKPAPDIFIAA 154
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 126 NDDYFEEVYEYYAKGEAWHLPHGAYQSIL-LLKD---AGVKVAVVSNFDTRLRKLLKDLN 181
ND+Y + + + P Y IL LLKD +K+A+ S LL+ +N
Sbjct: 77 NDNYVKMIQDVS--------PADVYPGILQLLKDLRSNKIKIALASA-SKNGPFLLERMN 127
Query: 182 VIDLFDAVVISSEVGCEKPDPRIFKAA 208
+ FDA+ +EV KP P IF AA
Sbjct: 128 LTGYFDAIADPAEVAASKPAPDIFIAA 154
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 126 NDDYFEEVYEYYAKGEAWHLPHGAYQSIL-LLKD---AGVKVAVVSNFDTRLRKLLKDLN 181
ND+Y + + + P Y IL LLKD +K+A+ S LL+ +N
Sbjct: 77 NDNYVKMIQDVS--------PADVYPGILQLLKDLRSNKIKIALASA-SKNGPFLLERMN 127
Query: 182 VIDLFDAVVISSEVGCEKPDPRIFKAA 208
+ FDA+ +EV KP P IF AA
Sbjct: 128 LTGYFDAIADPAEVAASKPAPDIFIAA 154
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 28/164 (17%)
Query: 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDG 110
+AV+ D G L E Y +A YG P+ E L G
Sbjct: 2 EAVIFDXDGVLXDTEPLYFEAYRRVAESYG-----------------KPYTEDLHRRIXG 44
Query: 111 RPFWR--LVVSEATGCTN--DDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVA 164
P ++ EA + +++ + V+E + E G +++ +K +K+A
Sbjct: 45 VPEREGLPILXEALEIKDSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLA 104
Query: 165 VVSNFDTRLRKLLKDLNVIDL---FDAVVISSEVGCEKPDPRIF 205
+ ++ T R+ L+ L +DL FD V +V KPDP I+
Sbjct: 105 LATS--TPQREALERLRRLDLEKYFDVXVFGDQVKNGKPDPEIY 146
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 114 WRLVVSEATG-CTNDDYFEEVYEYYAKGEAWHLPHGA-YQSILLLKDAGVKVAVVSNFDT 171
W + E G N EE Y + H+ +++L V++ +++N D
Sbjct: 98 WEEAIQETKGGAANRKLAEECYFLWKSTRLQHMTLAEDVKAMLTELRKEVRLLLLTNGDR 157
Query: 172 RL-RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIF 205
+ R+ ++ FDAVV+ E EKP P IF
Sbjct: 158 QTQREKIEACACQSYFDAVVVGGEQREEKPAPSIF 192
>pdb|1DGR|A Chain A, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|B Chain B, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|C Chain C, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|A Chain A, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 178
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 133 VYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVIS 192
V EY +K LPH + +L+L G + V+ N D R D +D DA+ I
Sbjct: 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR------DTYKLDQGDAIKIQ 96
Query: 193 SEVGCEKPDP------RIFKAAL-----GTSEHGFQLSCSVMPSSL 227
+ +P RI K A+ GT E F S +PS L
Sbjct: 97 AGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYL 142
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 156 LKDAGVKVAVVSNFDTRLRKLL---KDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTS 212
L++ G +V V+SN RL + + D D + +S ++G KP+ RI++ L
Sbjct: 103 LREQGHRVVVLSN-TNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAE 161
Query: 213 EHGFQLSCSVM 223
GF S +V
Sbjct: 162 --GFSPSDTVF 170
>pdb|1CAU|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|A Chain A, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|C Chain C, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|E Chain E, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 181
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 133 VYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVIS 192
V EY +K LPH + +L+L G + V+ N D R D +D DA+ I
Sbjct: 45 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR------DTYKLDQGDAIKIQ 98
Query: 193 SEVGCEKPDP------RIFKAAL-----GTSEHGFQLSCSVMPSSL 227
+ +P RI K A+ GT E F S +PS L
Sbjct: 99 AGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYL 144
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 22/136 (16%)
Query: 50 YDAVLLDAGGTLLQ----LAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLR 105
Y A + D GT+L L + + ++ V+ DIK F L
Sbjct: 4 YKAAIFDXDGTILDTSADLTSALNYAFEQTGHRHDFTVE--DIKNFFGSGVVVAVTRALA 61
Query: 106 YEGDGRPFWRLV--------VSEATGCTNDDYFEEVYE-YYAKGEAWHLPHGAYQSIL-- 154
YE G LV + EA T + EV++ YYA + + G + IL
Sbjct: 62 YEA-GSSRESLVAFGTKDEQIPEAVTQTEVNRVLEVFKPYYA--DHCQIKTGPFPGILDL 118
Query: 155 --LLKDAGVKVAVVSN 168
L+ GVK+AVVSN
Sbjct: 119 XKNLRQKGVKLAVVSN 134
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 58 GGTLLQLAEPVEETY------ASIARKYGLNVDSADIKKGFRKA-FAAPWPEKLRYEGDG 110
GGTL++ A VEE Y A GL + ++ G + A F AP+ G+G
Sbjct: 72 GGTLIESAILVEECYSVEPSAALTIFATGLGLTPINLAAGPQHAEFLAPF-----LSGEG 126
Query: 111 RPFWRLVVSEATGCTN 126
P LV SE G N
Sbjct: 127 SPLASLVFSEPGGVAN 142
>pdb|2OM6|A Chain A, Hypothetical Protein (probable Phosphoserine Phosph
(ph0253) From Pyrococcus Horikoshii Ot3
pdb|2OM6|B Chain B, Hypothetical Protein (probable Phosphoserine Phosph
(ph0253) From Pyrococcus Horikoshii Ot3
Length = 235
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 147 HGAYQSILLLKDAGVKVAVVSNFD----TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202
G +++ +K+ G+K AV+ N + R LL+ + + D + EV KP
Sbjct: 102 EGTKEALQFVKERGLKTAVIGNVXFWPGSYTRLLLERFGLXEFIDKTFFADEVLSYKPRK 161
Query: 203 RIFKAALGTSE 213
F+ L + E
Sbjct: 162 EXFEKVLNSFE 172
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 114 WRLVVSEATG-CTNDDYFEEVYEYYAKGEAWHLPHGA-YQSILLLKDAGVKVAVVSNFDT 171
W + E G N EE Y + H+ +++L V++ +++N D
Sbjct: 88 WEEAIQETKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLTELRKEVRLLLLTNGDR 147
Query: 172 RL-RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIF 205
+ R+ ++ FDA+VI E EKP P IF
Sbjct: 148 QTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIF 182
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 151 QSILLLKDAGVKVAVVSNF-----DTR--LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203
Q+ + LK G +V+N D R L +++ +L+ FD ++ S +VG KP+P+
Sbjct: 107 QAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELS--QHFDFLIESCQVGMIKPEPQ 164
Query: 204 IFKAALGT 211
I+ L T
Sbjct: 165 IYNFLLDT 172
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 133 VYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVIS 192
V EY +K LPH + +L+L G + V+ N D R D +D DA+ I
Sbjct: 88 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR------DTYKLDQGDAIKIQ 141
Query: 193 SEVGCEKPDP------RIFKAAL-----GTSEHGFQLSCSVMPSSL 227
+ +P RI K A+ GT E F S +PS L
Sbjct: 142 AGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYL 187
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 82 NVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEYY 137
+ + ++KKG+RKA P+K GD F +SEA ND E+Y+ Y
Sbjct: 19 SANEQELKKGYRKAALKYHPDKPT--GDTEKFKE--ISEAFEILNDPQKREIYDQY 70
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 35/133 (26%)
Query: 71 TYASIARKYG---LNVDSADIKKGFRKAFAAP----------WPEKLRYEGDGRPFWRLV 117
TY + + YG L V+ +IKKG P + +G+ W L
Sbjct: 289 TYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLT 348
Query: 118 VSEATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLL 177
V+ DY VYE +K +A L Y++ +LL
Sbjct: 349 VAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKT----------------------ELL 386
Query: 178 KDLNVIDLFDAVV 190
K L +IDL+D V
Sbjct: 387 KPLGIIDLYDREV 399
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 178 KDLNVIDLFDAVVISSEVGCEKPDPRIFKAA 208
+ V D F+ +S E+ KP+P IFKA
Sbjct: 152 RTFKVEDYFEKTYLSYEMKMAKPEPEIFKAV 182
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 178 KDLNVIDLFDAVVISSEVGCEKPDPRIFKAA 208
+ V D F+ +S E+ KP+P IFKA
Sbjct: 152 RTFKVEDYFEKTYLSYEMKMAKPEPEIFKAV 182
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 148 GAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIF 205
G +++ L K+ G+ V + S L K+L ++ D FDA+ + ++ KP P+++
Sbjct: 98 GVREAVALCKEQGLLVGLASASPLHXLEKVLTXFDLRDSFDALASAEKLPYSKPHPQVY 156
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 33 CSSMPLHSGVGKS--VKKAYDAVLLDAGGTLLQLAEPVEETYASI 75
CS++ L+ G + K D D G T L +++PVE +A+I
Sbjct: 43 CSNLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATI 87
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 33 CSSMPLHSGVGKS--VKKAYDAVLLDAGGTLLQLAEPVEETYASI 75
CS++ L+ G + K D D G T L +++PVE +A+I
Sbjct: 43 CSNLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATI 87
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGF 92
+DAVL D G L++ + + + S+ + GL++D +I F
Sbjct: 28 FDAVLFDLDGVLVESEGIIAQVWQSVLAERGLHLDLTEIAMYF 70
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 33 CSSMPLHSGVGKS--VKKAYDAVLLDAGGTLLQLAEPVEETYASI 75
CS++ L+ G + K D D G T L +++PVE +A+I
Sbjct: 43 CSNLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATI 87
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 33 CSSMPLHSGVGKS--VKKAYDAVLLDAGGTLLQLAEPVEETYASI 75
CS++ L+ G + K D D G T L +++PVE +A+I
Sbjct: 43 CSNLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATI 87
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 33 CSSMPLHSGVGKS--VKKAYDAVLLDAGGTLLQLAEPVEETYASI 75
CS++ L+ G + K D D G T L +++PVE +A+I
Sbjct: 43 CSNLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATI 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,917,982
Number of Sequences: 62578
Number of extensions: 288428
Number of successful extensions: 793
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 48
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)