Query 026879
Match_columns 231
No_of_seqs 131 out of 1269
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 14:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02252 DREG-2 REG-2-like, H 100.0 2.6E-27 5.7E-32 182.5 17.8 176 51-227 1-187 (203)
2 COG0637 Predicted phosphatase/ 100.0 2.4E-27 5.3E-32 184.4 15.1 165 49-228 1-170 (221)
3 PLN02770 haloacid dehalogenase 99.9 1.8E-26 4E-31 182.8 15.6 167 47-228 19-192 (248)
4 PLN02575 haloacid dehalogenase 99.9 9.4E-26 2E-30 185.6 17.2 166 49-228 130-300 (381)
5 PRK13478 phosphonoacetaldehyde 99.9 1.6E-26 3.5E-31 185.2 12.4 177 47-228 1-187 (267)
6 TIGR02253 CTE7 HAD superfamily 99.9 1.2E-25 2.6E-30 175.4 16.9 170 50-227 2-177 (221)
7 PLN03243 haloacid dehalogenase 99.9 7.5E-26 1.6E-30 179.8 15.9 166 49-228 23-193 (260)
8 TIGR01422 phosphonatase phosph 99.9 2.4E-26 5.1E-31 182.9 12.6 173 50-228 2-185 (253)
9 PRK09449 dUMP phosphatase; Pro 99.9 3E-25 6.6E-30 173.5 17.8 174 48-227 1-178 (224)
10 PRK13226 phosphoglycolate phos 99.9 9.5E-26 2.1E-30 176.8 15.0 165 49-228 11-179 (229)
11 TIGR03351 PhnX-like phosphonat 99.9 2.2E-25 4.8E-30 173.8 16.5 164 50-228 1-174 (220)
12 PRK13288 pyrophosphatase PpaX; 99.9 1.3E-25 2.7E-30 174.5 14.9 161 48-227 1-165 (214)
13 PRK10826 2-deoxyglucose-6-phos 99.9 3.3E-25 7.1E-30 173.1 17.0 165 49-228 6-176 (222)
14 PRK10725 fructose-1-P/6-phosph 99.9 3.7E-25 8.1E-30 168.4 15.2 166 47-229 2-171 (188)
15 PRK10563 6-phosphogluconate ph 99.9 9.1E-25 2E-29 170.5 16.3 165 47-228 1-170 (221)
16 PRK11587 putative phosphatase; 99.9 3.3E-25 7.2E-30 172.6 13.7 161 48-228 1-166 (218)
17 KOG3085 Predicted hydrolase (H 99.9 6.9E-25 1.5E-29 168.4 14.5 182 47-229 4-197 (237)
18 TIGR01428 HAD_type_II 2-haloal 99.9 3.3E-25 7.1E-30 170.1 12.7 168 50-228 1-176 (198)
19 TIGR01990 bPGM beta-phosphoglu 99.9 1.8E-24 4E-29 164.1 16.1 161 52-228 1-169 (185)
20 TIGR02009 PGMB-YQAB-SF beta-ph 99.9 1.7E-24 3.6E-29 164.4 15.5 163 50-228 1-170 (185)
21 TIGR02254 YjjG/YfnB HAD superf 99.9 4.1E-24 8.8E-29 167.0 17.8 172 50-227 1-180 (224)
22 PLN02940 riboflavin kinase 99.9 2.2E-24 4.7E-29 180.3 17.0 165 49-228 10-178 (382)
23 TIGR01449 PGP_bact 2-phosphogl 99.9 3.2E-24 7E-29 166.4 16.7 161 53-228 1-169 (213)
24 COG0546 Gph Predicted phosphat 99.9 1.7E-24 3.6E-29 168.7 14.6 171 47-228 1-173 (220)
25 PRK14988 GMP/IMP nucleotidase; 99.9 1.5E-23 3.2E-28 163.7 15.5 86 142-228 91-177 (224)
26 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 3.9E-23 8.4E-28 158.5 17.1 169 51-228 1-189 (197)
27 TIGR01454 AHBA_synth_RP 3-amin 99.9 2.1E-23 4.5E-28 161.0 15.6 155 53-228 1-159 (205)
28 PF13419 HAD_2: Haloacid dehal 99.9 6E-24 1.3E-28 159.3 11.3 159 53-228 1-161 (176)
29 PRK13223 phosphoglycolate phos 99.9 3E-23 6.6E-28 166.4 14.9 165 49-228 12-185 (272)
30 TIGR02247 HAD-1A3-hyp Epoxide 99.9 1.2E-23 2.6E-28 163.0 12.0 173 50-228 2-180 (211)
31 COG1011 Predicted hydrolase (H 99.9 4.1E-23 8.8E-28 161.9 14.2 177 47-229 1-183 (229)
32 PRK13222 phosphoglycolate phos 99.9 8E-23 1.7E-27 159.9 15.8 167 47-228 3-177 (226)
33 PLN02779 haloacid dehalogenase 99.9 9.1E-23 2E-27 164.6 16.0 167 49-228 39-230 (286)
34 PRK10748 flavin mononucleotide 99.9 1.2E-22 2.7E-27 160.0 15.3 172 48-227 8-190 (238)
35 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 2.7E-23 5.8E-28 156.5 8.8 163 52-229 1-168 (175)
36 PLN02919 haloacid dehalogenase 99.9 2.5E-22 5.4E-27 185.8 14.6 167 47-228 72-246 (1057)
37 PRK09456 ?-D-glucose-1-phospha 99.9 8.1E-22 1.8E-26 151.4 15.1 166 52-230 2-171 (199)
38 PRK13225 phosphoglycolate phos 99.9 1.3E-21 2.9E-26 156.4 15.6 157 49-228 61-223 (273)
39 TIGR01993 Pyr-5-nucltdase pyri 99.9 8.3E-22 1.8E-26 149.5 12.4 155 51-228 1-169 (184)
40 PRK06698 bifunctional 5'-methy 99.9 1.8E-21 3.9E-26 167.0 15.5 162 49-228 240-411 (459)
41 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 8.9E-21 1.9E-25 143.5 15.9 86 143-229 84-169 (183)
42 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 4.3E-21 9.2E-26 141.5 13.2 143 52-227 1-144 (154)
43 KOG2914 Predicted haloacid-hal 99.8 1.4E-19 3E-24 138.7 14.6 169 47-229 7-181 (222)
44 PLN02811 hydrolase 99.8 1.2E-19 2.6E-24 141.4 14.1 155 57-228 1-168 (220)
45 TIGR00338 serB phosphoserine p 99.8 3.9E-18 8.6E-23 132.8 15.1 158 47-228 11-179 (219)
46 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.8 1.6E-17 3.4E-22 127.6 14.3 85 143-228 79-174 (201)
47 PHA02597 30.2 hypothetical pro 99.8 8.1E-18 1.8E-22 129.0 12.4 148 50-229 2-157 (197)
48 PLN02954 phosphoserine phospha 99.7 3.3E-16 7.2E-21 122.4 15.6 156 47-227 9-179 (224)
49 TIGR01656 Histidinol-ppas hist 99.7 3.3E-17 7.2E-22 119.7 8.8 85 143-228 26-129 (147)
50 PRK08942 D,D-heptose 1,7-bisph 99.7 1.4E-16 3E-21 120.5 10.9 83 143-228 28-131 (181)
51 TIGR01691 enolase-ppase 2,3-di 99.7 1.4E-15 3E-20 117.7 15.5 84 142-228 93-180 (220)
52 TIGR01664 DNA-3'-Pase DNA 3'-p 99.7 4.5E-16 9.7E-21 115.7 10.8 81 144-227 42-137 (166)
53 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 1E-16 2.3E-21 114.2 6.9 81 144-229 29-120 (128)
54 TIGR01662 HAD-SF-IIIA HAD-supe 99.7 4E-16 8.6E-21 112.0 9.9 78 144-226 25-112 (132)
55 PRK06769 hypothetical protein; 99.7 3.2E-16 6.9E-21 117.5 9.5 85 143-228 27-121 (173)
56 TIGR00213 GmhB_yaeD D,D-heptos 99.7 9E-16 2E-20 115.5 11.1 83 143-228 25-134 (176)
57 PRK09552 mtnX 2-hydroxy-3-keto 99.7 2.1E-15 4.5E-20 117.5 12.2 152 51-227 4-170 (219)
58 TIGR01261 hisB_Nterm histidino 99.6 1.1E-15 2.3E-20 113.0 9.9 82 143-227 28-130 (161)
59 TIGR01685 MDP-1 magnesium-depe 99.6 7.3E-17 1.6E-21 120.0 3.7 87 142-229 43-142 (174)
60 KOG3109 Haloacid dehalogenase- 99.6 1.2E-14 2.7E-19 108.5 13.9 164 48-230 13-191 (244)
61 PRK11133 serB phosphoserine ph 99.6 3.4E-14 7.4E-19 116.0 15.6 156 48-227 108-274 (322)
62 TIGR01672 AphA HAD superfamily 99.6 2.6E-14 5.6E-19 111.6 12.6 77 143-227 113-194 (237)
63 TIGR01489 DKMTPPase-SF 2,3-dik 99.6 9.1E-14 2E-18 105.5 14.0 83 143-229 71-174 (188)
64 cd01427 HAD_like Haloacid deha 99.6 3E-14 6.6E-19 102.0 9.3 84 143-227 23-123 (139)
65 PRK13582 thrH phosphoserine ph 99.5 9.4E-14 2E-18 107.0 12.0 84 143-228 67-155 (205)
66 TIGR01488 HAD-SF-IB Haloacid D 99.5 3.4E-12 7.3E-17 96.0 13.8 84 143-227 72-168 (177)
67 TIGR03333 salvage_mtnX 2-hydro 99.4 1.7E-12 3.8E-17 100.7 11.7 84 143-227 69-166 (214)
68 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.4 4.3E-12 9.4E-17 97.5 12.7 84 143-227 86-181 (202)
69 TIGR01668 YqeG_hyp_ppase HAD s 99.4 1.5E-12 3.3E-17 97.3 9.8 74 144-227 43-118 (170)
70 TIGR01686 FkbH FkbH-like domai 99.4 1.5E-12 3.3E-17 107.0 7.8 79 144-228 31-114 (320)
71 TIGR02137 HSK-PSP phosphoserin 99.4 2.4E-11 5.1E-16 93.3 13.8 142 51-227 2-154 (203)
72 PRK05446 imidazole glycerol-ph 99.4 5.4E-12 1.2E-16 103.8 10.9 82 143-227 29-131 (354)
73 COG2179 Predicted hydrolase of 99.4 5.5E-12 1.2E-16 90.7 8.9 72 147-228 49-121 (175)
74 TIGR01663 PNK-3'Pase polynucle 99.4 6.6E-12 1.4E-16 108.2 11.1 81 144-227 197-294 (526)
75 TIGR01684 viral_ppase viral ph 99.3 4.5E-12 9.8E-17 100.3 8.5 59 146-204 148-207 (301)
76 COG0560 SerB Phosphoserine pho 99.3 4.2E-11 9.2E-16 92.4 13.7 157 48-227 3-170 (212)
77 PF00702 Hydrolase: haloacid d 99.3 5.4E-12 1.2E-16 97.6 8.5 78 144-227 127-205 (215)
78 smart00577 CPDc catalytic doma 99.3 2.7E-12 5.8E-17 93.8 5.9 81 143-228 44-126 (148)
79 PRK11590 hypothetical protein; 99.3 2.7E-11 5.9E-16 93.8 11.6 132 50-193 6-145 (211)
80 PHA02530 pseT polynucleotide k 99.3 4.5E-12 9.7E-17 103.4 7.4 87 143-229 186-281 (300)
81 TIGR01670 YrbI-phosphatas 3-de 99.3 3.1E-12 6.8E-17 94.0 4.1 66 152-227 36-102 (154)
82 TIGR02726 phenyl_P_delta pheny 99.3 1.1E-11 2.4E-16 92.1 6.0 67 151-227 41-108 (169)
83 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.2 2.9E-11 6.3E-16 95.6 8.2 78 144-227 24-105 (242)
84 PRK11009 aphA acid phosphatase 99.2 8E-11 1.7E-15 92.0 10.1 75 143-227 113-194 (237)
85 TIGR01452 PGP_euk phosphoglyco 99.2 2E-11 4.3E-16 98.5 4.7 81 145-227 144-229 (279)
86 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.2 1.7E-11 3.6E-16 97.7 4.1 82 145-227 121-206 (257)
87 TIGR01544 HAD-SF-IE haloacid d 99.2 3.3E-09 7.1E-14 84.3 16.4 168 53-227 25-221 (277)
88 PRK08238 hypothetical protein; 99.1 1.1E-09 2.4E-14 94.0 12.3 78 143-227 71-149 (479)
89 TIGR02244 HAD-IG-Ncltidse HAD 99.1 7.7E-09 1.7E-13 84.8 14.9 85 143-228 183-305 (343)
90 TIGR01533 lipo_e_P4 5'-nucleot 99.1 2.2E-09 4.7E-14 85.3 11.4 79 141-227 115-198 (266)
91 PHA03398 viral phosphatase sup 99.1 1E-09 2.3E-14 87.1 9.5 50 146-195 150-200 (303)
92 PF06888 Put_Phosphatase: Puta 99.1 3.6E-09 7.8E-14 82.3 11.8 117 52-192 2-122 (234)
93 COG0241 HisB Histidinol phosph 99.0 3.8E-09 8.3E-14 78.5 11.0 82 143-227 30-132 (181)
94 PRK09484 3-deoxy-D-manno-octul 99.0 6.2E-10 1.4E-14 84.2 6.7 67 151-227 55-122 (183)
95 COG4229 Predicted enolase-phos 99.0 8.8E-09 1.9E-13 75.2 12.1 82 143-227 102-187 (229)
96 PTZ00445 p36-lilke protein; Pr 99.0 8.3E-10 1.8E-14 83.2 6.7 86 144-230 75-191 (219)
97 PF08645 PNK3P: Polynucleotide 99.0 2.5E-09 5.3E-14 78.9 8.6 81 143-226 27-127 (159)
98 PF12689 Acid_PPase: Acid Phos 99.0 3.7E-10 8E-15 83.5 3.9 84 141-230 42-137 (169)
99 PRK10444 UMP phosphatase; Prov 99.0 7.9E-09 1.7E-13 81.8 10.6 32 195-227 170-201 (248)
100 COG0647 NagD Predicted sugar p 99.0 6.7E-09 1.5E-13 82.3 9.9 49 144-192 24-77 (269)
101 TIGR01545 YfhB_g-proteo haloac 98.9 1.9E-08 4.1E-13 77.7 10.6 61 130-193 82-144 (210)
102 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.9 4.5E-09 9.8E-14 83.4 5.9 80 145-227 122-205 (249)
103 COG4996 Predicted phosphatase 98.8 1.1E-08 2.4E-13 70.6 5.8 82 141-227 38-126 (164)
104 PF13344 Hydrolase_6: Haloacid 98.8 2.9E-08 6.3E-13 67.5 6.8 51 144-194 14-68 (101)
105 PLN02645 phosphoglycolate phos 98.7 7.8E-08 1.7E-12 78.8 8.5 51 144-194 44-98 (311)
106 KOG1615 Phosphoserine phosphat 98.6 2.8E-06 6E-11 63.1 14.4 114 49-184 15-129 (227)
107 PF12710 HAD: haloacid dehalog 98.6 1.3E-07 2.9E-12 71.7 7.9 77 147-227 92-185 (192)
108 KOG3120 Predicted haloacid deh 98.6 3.3E-07 7.1E-12 69.2 9.2 49 143-191 83-133 (256)
109 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.6 2.5E-08 5.3E-13 78.9 2.0 81 146-227 140-223 (242)
110 PF09419 PGP_phosphatase: Mito 98.5 4.5E-07 9.8E-12 66.9 8.0 74 144-228 59-147 (168)
111 TIGR02251 HIF-SF_euk Dullard-l 98.5 1.6E-07 3.4E-12 69.6 3.9 81 143-228 41-123 (162)
112 COG1778 Low specificity phosph 98.4 1.6E-07 3.6E-12 67.1 2.6 67 152-228 43-110 (170)
113 TIGR01675 plant-AP plant acid 98.4 3.3E-06 7.2E-11 65.5 9.9 60 140-200 116-179 (229)
114 KOG3040 Predicted sugar phosph 98.4 2.2E-06 4.7E-11 64.3 7.7 30 197-227 179-208 (262)
115 TIGR01680 Veg_Stor_Prot vegeta 98.3 1.2E-05 2.6E-10 63.5 10.7 54 140-194 141-198 (275)
116 PRK00192 mannosyl-3-phosphogly 98.2 4.3E-06 9.4E-11 67.3 6.5 40 147-186 24-64 (273)
117 PF03767 Acid_phosphat_B: HAD 98.2 5.8E-06 1.3E-10 64.7 6.5 48 143-191 114-165 (229)
118 PRK10513 sugar phosphate phosp 98.1 9.5E-06 2.1E-10 65.1 7.4 36 149-184 25-61 (270)
119 TIGR02250 FCP1_euk FCP1-like p 98.1 7.5E-06 1.6E-10 60.1 6.1 77 143-227 57-137 (156)
120 PRK01158 phosphoglycolate phos 98.1 7.2E-06 1.6E-10 64.2 6.2 35 149-183 25-60 (230)
121 PF03031 NIF: NLI interacting 98.1 7.1E-06 1.5E-10 60.5 4.9 81 143-228 35-117 (159)
122 PF06941 NT5C: 5' nucleotidase 98.0 5.4E-06 1.2E-10 63.2 4.2 42 128-169 54-98 (191)
123 PRK10530 pyridoxal phosphate ( 98.0 1.8E-05 4E-10 63.5 6.6 18 48-65 1-18 (272)
124 COG0561 Cof Predicted hydrolas 97.9 4.6E-05 9.9E-10 61.0 6.9 38 147-184 23-61 (264)
125 TIGR01487 SPP-like sucrose-pho 97.9 3.7E-05 7.9E-10 59.6 6.0 36 148-183 22-58 (215)
126 PRK12702 mannosyl-3-phosphogly 97.8 4.3E-05 9.3E-10 61.2 6.2 37 149-185 23-60 (302)
127 PRK15126 thiamin pyrimidine py 97.8 4.2E-05 9E-10 61.5 6.1 36 149-184 24-60 (272)
128 TIGR01460 HAD-SF-IIA Haloacid 97.8 4.5E-05 9.7E-10 60.1 5.9 50 144-193 14-68 (236)
129 PF05152 DUF705: Protein of un 97.8 0.00015 3.2E-09 57.4 8.4 49 145-193 143-192 (297)
130 PF05761 5_nucleotid: 5' nucle 97.8 0.00014 3E-09 62.2 8.9 52 141-192 180-241 (448)
131 PRK10976 putative hydrolase; P 97.8 6.4E-05 1.4E-09 60.2 6.1 34 150-183 25-59 (266)
132 PTZ00174 phosphomannomutase; P 97.8 9.8E-05 2.1E-09 58.6 7.0 30 149-178 27-57 (247)
133 KOG2882 p-Nitrophenyl phosphat 97.7 5.9E-05 1.3E-09 60.0 5.5 80 146-227 167-251 (306)
134 TIGR02461 osmo_MPG_phos mannos 97.7 8.2E-05 1.8E-09 58.2 6.0 38 147-184 18-56 (225)
135 PRK03669 mannosyl-3-phosphogly 97.7 0.00013 2.9E-09 58.6 7.3 35 149-183 29-64 (271)
136 KOG2630 Enolase-phosphatase E- 97.7 0.0016 3.6E-08 49.9 11.8 76 143-225 122-205 (254)
137 TIGR01689 EcbF-BcbF capsule bi 97.6 0.00046 9.9E-09 48.7 8.1 48 144-193 24-87 (126)
138 smart00775 LNS2 LNS2 domain. T 97.6 0.00037 8E-09 51.3 7.8 36 144-179 27-66 (157)
139 COG4359 Uncharacterized conser 97.6 0.0031 6.8E-08 46.7 12.0 39 143-181 72-111 (220)
140 PLN02645 phosphoglycolate phos 97.5 2.6E-05 5.6E-10 64.0 0.9 76 151-227 177-257 (311)
141 TIGR01525 ATPase-IB_hvy heavy 97.5 0.00022 4.7E-09 63.3 6.1 72 144-227 384-457 (556)
142 TIGR00099 Cof-subfamily Cof su 97.5 0.00032 6.9E-09 55.9 6.0 36 148-183 20-56 (256)
143 TIGR01456 CECR5 HAD-superfamil 97.4 0.00014 2.9E-09 60.1 3.8 16 52-67 2-17 (321)
144 TIGR02463 MPGP_rel mannosyl-3- 97.4 0.00032 6.9E-09 54.6 5.6 35 149-183 21-56 (221)
145 PF08282 Hydrolase_3: haloacid 97.4 0.0005 1.1E-08 54.0 6.7 37 147-183 18-55 (254)
146 PF11019 DUF2608: Protein of u 97.4 0.0036 7.7E-08 49.8 11.3 81 144-229 81-190 (252)
147 PLN02887 hydrolase family prot 97.4 0.00036 7.9E-09 61.7 6.1 35 149-183 330-365 (580)
148 TIGR01482 SPP-subfamily Sucros 97.4 0.00034 7.4E-09 54.4 5.2 13 53-65 1-13 (225)
149 TIGR01512 ATPase-IB2_Cd heavy 97.3 0.00031 6.7E-09 62.0 5.2 72 144-227 362-435 (536)
150 TIGR01486 HAD-SF-IIB-MPGP mann 97.3 0.00067 1.5E-08 54.1 6.5 36 149-184 21-57 (256)
151 PRK14502 bifunctional mannosyl 97.3 0.00062 1.4E-08 60.6 6.5 35 150-184 439-474 (694)
152 COG2503 Predicted secreted aci 97.3 0.0036 7.8E-08 48.5 9.6 46 142-187 120-170 (274)
153 PF13242 Hydrolase_like: HAD-h 97.1 0.0004 8.6E-09 44.3 2.3 29 197-226 2-30 (75)
154 PF08235 LNS2: LNS2 (Lipin/Ned 97.0 0.0037 8E-08 45.7 7.2 37 144-180 27-67 (157)
155 TIGR01511 ATPase-IB1_Cu copper 97.0 0.001 2.3E-08 59.0 5.1 71 144-227 405-476 (562)
156 COG3882 FkbH Predicted enzyme 96.9 0.003 6.6E-08 53.6 6.5 74 149-228 260-338 (574)
157 TIGR01522 ATPase-IIA2_Ca golgi 96.7 0.004 8.7E-08 58.3 6.8 83 144-227 528-627 (884)
158 TIGR01484 HAD-SF-IIB HAD-super 96.7 0.0044 9.4E-08 47.5 5.5 14 52-65 1-14 (204)
159 PRK10671 copA copper exporting 96.7 0.0039 8.5E-08 58.1 6.1 72 144-227 650-722 (834)
160 TIGR01452 PGP_euk phosphoglyco 96.5 0.0097 2.1E-07 48.1 7.0 50 144-193 18-71 (279)
161 PRK10187 trehalose-6-phosphate 96.5 0.0061 1.3E-07 48.9 5.8 38 144-181 36-75 (266)
162 TIGR02245 HAD_IIID1 HAD-superf 96.3 0.014 3E-07 44.4 6.0 38 144-182 45-83 (195)
163 KOG2134 Polynucleotide kinase 96.2 0.019 4.2E-07 47.5 6.6 69 144-214 104-185 (422)
164 TIGR01460 HAD-SF-IIA Haloacid 96.1 0.0041 8.8E-08 49.0 2.5 69 159-227 143-216 (236)
165 TIGR01457 HAD-SF-IIA-hyp2 HAD- 96.0 0.016 3.5E-07 46.0 5.5 50 144-193 17-70 (249)
166 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.0 0.013 2.8E-07 46.8 4.8 50 144-193 21-74 (257)
167 PLN02499 glycerol-3-phosphate 95.9 0.13 2.7E-06 44.6 10.7 31 152-183 101-133 (498)
168 PLN02177 glycerol-3-phosphate 95.8 0.087 1.9E-06 46.1 9.7 35 145-183 111-147 (497)
169 TIGR02471 sucr_syn_bact_C sucr 95.8 0.016 3.6E-07 45.4 4.7 31 152-183 23-54 (236)
170 PLN02580 trehalose-phosphatase 95.7 0.025 5.4E-07 47.6 5.4 35 144-179 141-176 (384)
171 PRK11033 zntA zinc/cadmium/mer 95.6 0.016 3.6E-07 53.2 4.6 70 144-227 568-638 (741)
172 TIGR01485 SPP_plant-cyano sucr 95.6 0.029 6.4E-07 44.4 5.4 35 149-183 26-61 (249)
173 PLN02423 phosphomannomutase 95.4 0.013 2.8E-07 46.5 2.8 28 49-76 5-33 (245)
174 PLN02151 trehalose-phosphatase 95.1 0.047 1E-06 45.4 5.4 34 144-178 120-154 (354)
175 PLN03017 trehalose-phosphatase 94.9 0.068 1.5E-06 44.6 5.7 32 144-176 133-165 (366)
176 COG3769 Predicted hydrolase (H 94.8 0.1 2.3E-06 40.1 5.9 35 149-183 28-63 (274)
177 TIGR00685 T6PP trehalose-phosp 94.8 0.057 1.2E-06 42.7 4.8 24 203-227 170-193 (244)
178 PRK14501 putative bifunctional 94.7 0.075 1.6E-06 48.9 6.0 37 145-181 515-553 (726)
179 KOG2470 Similar to IMP-GMP spe 94.2 0.035 7.6E-07 45.5 2.5 47 145-191 241-291 (510)
180 COG1877 OtsB Trehalose-6-phosp 93.8 0.13 2.8E-06 41.1 5.0 35 144-178 40-76 (266)
181 PLN02205 alpha,alpha-trehalose 93.6 0.16 3.4E-06 47.5 5.8 34 145-178 617-652 (854)
182 COG4087 Soluble P-type ATPase 93.6 0.46 1E-05 33.5 6.7 73 143-226 29-102 (152)
183 KOG4549 Magnesium-dependent ph 93.6 0.41 8.9E-06 33.4 6.3 79 142-226 42-131 (144)
184 COG0731 Fe-S oxidoreductases [ 93.5 0.32 6.8E-06 39.4 6.7 68 141-213 89-165 (296)
185 COG5610 Predicted hydrolase (H 93.4 0.49 1.1E-05 40.5 7.8 84 144-228 97-185 (635)
186 TIGR01658 EYA-cons_domain eyes 93.4 0.98 2.1E-05 35.5 8.8 61 161-226 176-239 (274)
187 TIGR01116 ATPase-IIA1_Ca sarco 92.0 0.28 6.2E-06 46.4 5.3 41 144-184 537-578 (917)
188 PLN03064 alpha,alpha-trehalose 91.7 0.42 9E-06 45.0 5.9 38 144-181 622-661 (934)
189 TIGR01497 kdpB K+-transporting 91.7 0.47 1E-05 43.2 6.0 71 144-227 446-518 (675)
190 KOG1618 Predicted phosphatase 91.7 0.41 8.8E-06 39.0 5.0 26 144-169 51-80 (389)
191 PLN03063 alpha,alpha-trehalose 91.6 0.29 6.2E-06 45.6 4.7 36 144-179 532-569 (797)
192 COG2217 ZntA Cation transport 91.5 0.44 9.5E-06 43.6 5.7 43 144-186 537-580 (713)
193 PRK10530 pyridoxal phosphate ( 91.2 0.39 8.5E-06 38.3 4.7 80 144-227 137-225 (272)
194 COG4502 5'(3')-deoxyribonucleo 91.0 0.68 1.5E-05 33.1 5.0 26 143-169 67-92 (180)
195 PF02358 Trehalose_PPase: Treh 90.7 0.3 6.4E-06 38.3 3.4 29 144-172 19-48 (235)
196 KOG0323 TFIIF-interacting CTD 90.6 0.55 1.2E-05 42.1 5.3 53 143-196 200-255 (635)
197 KOG2961 Predicted hydrolase (H 90.0 1.5 3.3E-05 31.8 6.1 16 49-64 42-57 (190)
198 PRK01122 potassium-transportin 89.9 1 2.2E-05 41.2 6.4 71 144-227 445-517 (679)
199 PRK14010 potassium-transportin 88.9 1.6 3.4E-05 39.9 6.9 71 144-227 441-513 (673)
200 KOG2882 p-Nitrophenyl phosphat 87.6 1.1 2.5E-05 36.1 4.7 40 144-183 38-81 (306)
201 PF05822 UMPH-1: Pyrimidine 5' 86.7 2.1 4.6E-05 33.8 5.6 42 141-182 87-129 (246)
202 COG4850 Uncharacterized conser 85.9 3.9 8.5E-05 33.6 6.8 31 143-173 195-226 (373)
203 KOG0207 Cation transport ATPas 85.8 4.2 9E-05 38.0 7.7 72 144-227 723-795 (951)
204 PRK13762 tRNA-modifying enzyme 85.4 3.2 7E-05 34.3 6.5 29 143-171 141-169 (322)
205 KOG2469 IMP-GMP specific 5'-nu 84.9 3 6.4E-05 35.3 5.9 84 144-228 198-315 (424)
206 TIGR01647 ATPase-IIIA_H plasma 84.7 1.9 4.1E-05 40.1 5.3 41 144-184 442-483 (755)
207 COG5083 SMP2 Uncharacterized p 84.6 0.96 2.1E-05 38.5 3.0 42 50-96 375-416 (580)
208 KOG3128 Uncharacterized conser 84.3 1.7 3.6E-05 34.4 3.9 40 141-180 135-175 (298)
209 TIGR01456 CECR5 HAD-superfamil 84.1 0.99 2.2E-05 37.3 2.9 32 196-227 230-273 (321)
210 PRK10517 magnesium-transportin 81.2 3.5 7.7E-05 39.2 5.6 49 144-194 550-599 (902)
211 TIGR01517 ATPase-IIB_Ca plasma 80.9 5.1 0.00011 38.3 6.7 41 144-184 579-620 (941)
212 TIGR01524 ATPase-IIIB_Mg magne 80.1 5.1 0.00011 38.0 6.3 40 144-183 515-555 (867)
213 PRK15122 magnesium-transportin 80.1 4.2 9.2E-05 38.7 5.8 40 144-183 550-590 (903)
214 COG3700 AphA Acid phosphatase 79.7 12 0.00026 28.1 6.7 47 147-193 117-168 (237)
215 TIGR01523 ATPase-IID_K-Na pota 77.1 8.4 0.00018 37.4 6.8 40 144-183 646-686 (1053)
216 PF03332 PMM: Eukaryotic phosp 77.0 5.1 0.00011 31.1 4.4 44 149-193 1-45 (220)
217 PF05116 S6PP: Sucrose-6F-phos 77.0 2.1 4.5E-05 34.0 2.4 27 51-77 3-29 (247)
218 smart00577 CPDc catalytic doma 76.7 1.6 3.5E-05 31.5 1.6 15 51-65 3-17 (148)
219 TIGR02251 HIF-SF_euk Dullard-l 76.1 1.6 3.5E-05 32.1 1.5 15 51-65 2-16 (162)
220 KOG3189 Phosphomannomutase [Li 76.0 2.7 5.7E-05 32.1 2.6 28 51-78 12-39 (252)
221 COG5663 Uncharacterized conser 73.5 6.9 0.00015 29.0 4.1 28 144-172 72-99 (194)
222 KOG2116 Protein involved in pl 71.9 5.3 0.00012 35.9 3.8 47 50-101 530-576 (738)
223 TIGR02463 MPGP_rel mannosyl-3- 71.9 14 0.00031 28.3 6.0 49 173-227 153-205 (221)
224 TIGR02250 FCP1_euk FCP1-like p 70.7 2.7 6E-05 30.8 1.6 18 50-67 6-23 (156)
225 TIGR01494 ATPase_P-type ATPase 70.6 18 0.00038 31.9 6.9 39 144-182 347-386 (499)
226 PF06437 ISN1: IMP-specific 5' 68.9 14 0.00029 31.3 5.3 17 49-65 146-162 (408)
227 TIGR03470 HpnH hopanoid biosyn 68.2 13 0.00028 30.7 5.3 30 141-170 81-110 (318)
228 COG0378 HypB Ni2+-binding GTPa 65.3 39 0.00084 25.9 6.7 61 149-215 30-93 (202)
229 TIGR02495 NrdG2 anaerobic ribo 65.0 16 0.00034 27.4 4.8 29 143-171 73-101 (191)
230 TIGR03365 Bsubt_queE 7-cyano-7 64.6 7 0.00015 30.8 2.9 30 143-172 83-112 (238)
231 COG0474 MgtA Cation transport 62.5 15 0.00033 35.1 5.1 51 144-194 547-600 (917)
232 COG2216 KdpB High-affinity K+ 61.8 14 0.0003 32.6 4.3 42 145-186 448-490 (681)
233 TIGR01106 ATPase-IIC_X-K sodiu 61.5 12 0.00026 36.1 4.4 40 144-183 568-608 (997)
234 PRK10076 pyruvate formate lyas 60.9 9.2 0.0002 29.6 2.9 29 143-171 49-78 (213)
235 TIGR01652 ATPase-Plipid phosph 59.0 14 0.0003 36.0 4.3 41 144-184 631-672 (1057)
236 TIGR01485 SPP_plant-cyano sucr 58.7 22 0.00048 27.9 4.9 65 160-227 119-193 (249)
237 TIGR01657 P-ATPase-V P-type AT 58.4 27 0.00059 34.0 6.1 41 144-184 656-697 (1054)
238 TIGR02471 sucr_syn_bact_C sucr 57.9 17 0.00038 28.2 4.1 65 160-227 112-185 (236)
239 TIGR02109 PQQ_syn_pqqE coenzym 57.8 25 0.00054 29.4 5.2 41 143-183 64-107 (358)
240 PRK00192 mannosyl-3-phosphogly 57.6 18 0.00039 28.9 4.2 67 154-227 142-217 (273)
241 KOG0202 Ca2+ transporting ATPa 57.2 21 0.00046 33.4 4.8 44 144-187 584-628 (972)
242 PF03603 DNA_III_psi: DNA poly 56.8 28 0.00061 24.6 4.5 71 154-228 7-77 (128)
243 PF00875 DNA_photolyase: DNA p 55.4 17 0.00036 26.6 3.4 44 147-194 53-97 (165)
244 PRK05301 pyrroloquinoline quin 54.7 28 0.00062 29.3 5.1 41 142-182 72-115 (378)
245 TIGR02826 RNR_activ_nrdG3 anae 54.2 20 0.00043 26.0 3.5 25 147-171 75-99 (147)
246 PLN02382 probable sucrose-phos 53.2 7.9 0.00017 33.3 1.5 25 202-227 177-204 (413)
247 TIGR01482 SPP-subfamily Sucros 52.8 25 0.00054 26.9 4.2 63 164-227 111-175 (225)
248 COG4030 Uncharacterized protei 52.1 1.2E+02 0.0025 24.0 8.5 39 143-182 82-121 (315)
249 TIGR03278 methan_mark_10 putat 51.6 23 0.00049 30.4 4.0 41 143-183 85-130 (404)
250 TIGR02886 spore_II_AA anti-sig 51.4 34 0.00074 22.7 4.2 35 151-186 62-96 (106)
251 cd07043 STAS_anti-anti-sigma_f 50.7 38 0.00083 21.8 4.3 36 150-186 60-95 (99)
252 smart00540 LEM in nuclear memb 50.3 15 0.00033 20.6 1.9 30 150-179 9-39 (44)
253 KOG1605 TFIIF-interacting CTD 50.3 9.6 0.00021 30.5 1.4 17 49-65 88-104 (262)
254 PF04358 DsrC: DsrC like prote 50.2 80 0.0017 21.6 6.1 38 51-88 7-44 (109)
255 PRK01158 phosphoglycolate phos 47.4 33 0.00072 26.3 4.1 62 163-227 118-183 (230)
256 TIGR01487 SPP-like sucrose-pho 47.0 35 0.00077 26.0 4.2 62 164-227 111-173 (215)
257 PRK13717 conjugal transfer pro 45.9 48 0.0011 23.3 4.1 14 48-61 43-56 (128)
258 cd01421 IMPCH Inosine monophos 45.4 61 0.0013 24.6 5.0 33 146-182 10-42 (187)
259 TIGR02493 PFLA pyruvate format 44.8 35 0.00076 26.5 3.9 27 143-169 76-103 (235)
260 COG2897 SseA Rhodanese-related 44.7 27 0.00059 28.4 3.2 31 196-226 69-99 (285)
261 PF03808 Glyco_tran_WecB: Glyc 43.9 1.3E+02 0.0028 22.2 6.6 17 152-168 40-56 (172)
262 cd04728 ThiG Thiazole synthase 43.6 1.6E+02 0.0034 23.5 7.1 68 143-213 103-175 (248)
263 PF10137 TIR-like: Predicted n 43.4 78 0.0017 22.2 5.0 45 159-203 23-71 (125)
264 cd05014 SIS_Kpsf KpsF-like pro 43.2 29 0.00062 23.9 2.9 26 145-170 59-84 (128)
265 PLN03190 aminophospholipid tra 42.8 41 0.00089 33.2 4.7 40 144-183 726-766 (1178)
266 cd05008 SIS_GlmS_GlmD_1 SIS (S 42.1 28 0.00061 23.9 2.7 26 146-171 59-84 (126)
267 PF14213 DUF4325: Domain of un 42.0 39 0.00084 21.1 3.1 30 51-80 18-47 (74)
268 PF04413 Glycos_transf_N: 3-De 42.0 64 0.0014 24.3 4.8 87 125-224 82-178 (186)
269 KOG0206 P-type ATPase [General 41.6 3.7E+02 0.008 26.8 11.1 48 144-191 651-700 (1151)
270 KOG0204 Calcium transporting A 40.7 66 0.0014 30.5 5.3 42 144-185 647-689 (1034)
271 cd02071 MM_CoA_mut_B12_BD meth 40.5 52 0.0011 22.7 3.8 38 147-184 65-105 (122)
272 cd00532 MGS-like MGS-like doma 39.6 1.2E+02 0.0026 20.5 6.8 59 154-215 36-101 (112)
273 COG4850 Uncharacterized conser 39.1 2.3E+02 0.005 23.7 8.8 60 146-213 239-302 (373)
274 cd05710 SIS_1 A subgroup of th 38.3 39 0.00084 23.2 2.9 26 146-171 60-85 (120)
275 PF04055 Radical_SAM: Radical 38.2 94 0.002 21.8 5.1 72 141-212 54-136 (166)
276 COG4019 Uncharacterized protei 38.0 1.4E+02 0.0031 21.0 6.9 53 155-209 32-87 (156)
277 TIGR02668 moaA_archaeal probab 37.5 75 0.0016 25.8 4.9 40 143-182 67-109 (302)
278 TIGR00377 ant_ant_sig anti-ant 37.2 86 0.0019 20.6 4.5 36 151-187 66-101 (108)
279 KOG2469 IMP-GMP specific 5'-nu 37.1 23 0.00051 30.1 1.8 19 47-65 24-42 (424)
280 PF13911 AhpC-TSA_2: AhpC/TSA 36.8 1.1E+02 0.0025 20.5 5.1 32 151-182 4-36 (115)
281 PF08484 Methyltransf_14: C-me 36.7 1.3E+02 0.0029 22.0 5.6 46 147-193 55-101 (160)
282 cd01445 TST_Repeats Thiosulfat 36.5 52 0.0011 23.4 3.4 29 197-225 75-103 (138)
283 KOG1014 17 beta-hydroxysteroid 35.2 1.6E+02 0.0034 24.4 6.1 57 150-213 63-123 (312)
284 COG2044 Predicted peroxiredoxi 35.0 68 0.0015 22.4 3.6 27 144-170 59-85 (120)
285 KOG2832 TFIIF-interacting CTD 34.9 1.4E+02 0.0029 25.4 5.8 76 144-224 214-290 (393)
286 PF14097 SpoVAE: Stage V sporu 34.5 1.7E+02 0.0038 21.8 5.7 11 163-173 2-12 (180)
287 PRK11145 pflA pyruvate formate 34.1 33 0.00073 26.9 2.3 28 143-170 81-109 (246)
288 COG0602 NrdG Organic radical a 33.8 58 0.0013 25.2 3.5 28 145-172 84-111 (212)
289 TIGR01101 V_ATP_synt_F vacuola 33.7 1.5E+02 0.0033 20.5 5.1 63 147-211 46-111 (115)
290 cd06589 GH31 The enzymes of gl 33.6 57 0.0012 26.1 3.5 27 144-170 63-89 (265)
291 smart00266 CAD Domains present 33.4 28 0.0006 22.0 1.3 16 50-65 38-53 (74)
292 PF03020 LEM: LEM domain; Int 33.2 7.3 0.00016 21.8 -1.2 29 151-179 10-39 (43)
293 COG4333 Uncharacterized protei 33.1 14 0.00031 26.4 0.0 18 2-19 15-32 (167)
294 PF09895 DUF2122: RecB-family 33.0 1.2E+02 0.0027 20.6 4.5 57 140-199 19-75 (106)
295 COG0505 CarA Carbamoylphosphat 32.7 1.9E+02 0.0042 24.4 6.3 65 145-215 185-250 (368)
296 cd04795 SIS SIS domain. SIS (S 32.7 49 0.0011 20.7 2.6 22 146-167 60-81 (87)
297 cd04906 ACT_ThrD-I_1 First of 32.5 89 0.0019 19.9 3.7 23 148-170 54-76 (85)
298 PRK00208 thiG thiazole synthas 32.1 2.6E+02 0.0057 22.3 7.1 67 144-213 104-175 (250)
299 TIGR02666 moaA molybdenum cofa 32.1 1.1E+02 0.0024 25.3 5.1 41 143-183 70-114 (334)
300 TIGR01484 HAD-SF-IIB HAD-super 31.7 44 0.00094 25.2 2.5 31 196-227 159-189 (204)
301 COG1117 PstB ABC-type phosphat 31.6 89 0.0019 24.6 4.0 30 149-179 188-217 (253)
302 cd06537 CIDE_N_B CIDE_N domain 31.6 31 0.00068 22.2 1.3 15 51-65 40-54 (81)
303 COG1180 PflA Pyruvate-formate 31.3 46 0.001 26.6 2.6 28 144-171 96-123 (260)
304 PF00696 AA_kinase: Amino acid 31.3 1E+02 0.0023 23.8 4.7 40 147-186 20-59 (242)
305 TIGR02765 crypto_DASH cryptoch 31.3 1.1E+02 0.0025 26.3 5.2 34 149-182 63-97 (429)
306 cd06539 CIDE_N_A CIDE_N domain 31.1 32 0.0007 22.0 1.4 16 50-65 40-55 (78)
307 TIGR03127 RuMP_HxlB 6-phospho 30.8 56 0.0012 24.1 2.9 26 146-171 85-110 (179)
308 cd08612 GDPD_GDE4 Glycerophosp 30.7 1.3E+02 0.0028 24.5 5.2 38 149-191 250-288 (300)
309 PRK13361 molybdenum cofactor b 30.5 1.2E+02 0.0026 25.1 5.0 41 143-183 72-116 (329)
310 PF05240 APOBEC_C: APOBEC-like 30.4 45 0.00098 19.7 1.8 22 147-168 2-23 (55)
311 PF02593 dTMP_synthase: Thymid 30.0 2.7E+02 0.0058 21.7 7.0 68 144-215 59-133 (217)
312 TIGR00696 wecB_tagA_cpsF bacte 30.0 2.3E+02 0.005 21.2 6.0 20 151-170 39-58 (177)
313 cd06595 GH31_xylosidase_XylS-l 29.7 72 0.0016 25.9 3.6 25 144-168 71-95 (292)
314 PF08620 RPAP1_C: RPAP1-like, 29.5 22 0.00047 22.4 0.4 9 54-62 4-12 (73)
315 COG1433 Uncharacterized conser 29.5 1.2E+02 0.0027 21.2 4.1 35 149-183 54-88 (121)
316 COG2920 DsrC Dissimilatory sul 29.5 1.8E+02 0.004 19.7 5.9 39 50-88 8-46 (111)
317 cd01615 CIDE_N CIDE_N domain, 29.4 35 0.00076 21.8 1.3 16 50-65 40-55 (78)
318 PRK06856 DNA polymerase III su 29.4 89 0.0019 22.1 3.5 59 155-217 7-65 (128)
319 COG1366 SpoIIAA Anti-anti-sigm 29.0 1.3E+02 0.0027 20.5 4.3 35 151-186 67-101 (117)
320 PRK08091 ribulose-phosphate 3- 29.0 2.9E+02 0.0062 21.7 7.0 61 147-210 103-168 (228)
321 PRK09454 ugpQ cytoplasmic glyc 28.8 1.8E+02 0.0039 22.9 5.6 46 150-201 199-245 (249)
322 cd05006 SIS_GmhA Phosphoheptos 28.7 63 0.0014 23.9 2.9 26 145-170 113-138 (177)
323 TIGR03556 photolyase_8HDF deox 28.7 1.6E+02 0.0035 25.9 5.7 44 147-194 55-99 (471)
324 PF12261 T_hemolysin: Thermost 28.5 1.4E+02 0.0029 22.6 4.5 32 151-183 107-138 (179)
325 cd07041 STAS_RsbR_RsbS_like Su 28.3 1.6E+02 0.0035 19.4 4.7 35 149-184 62-96 (109)
326 PF00578 AhpC-TSA: AhpC/TSA fa 28.2 80 0.0017 21.2 3.2 36 147-182 46-82 (124)
327 cd05017 SIS_PGI_PMI_1 The memb 28.2 64 0.0014 22.0 2.7 34 146-180 56-89 (119)
328 PF00072 Response_reg: Respons 28.0 1.2E+02 0.0026 19.7 4.0 40 147-186 56-98 (112)
329 TIGR00685 T6PP trehalose-phosp 28.0 54 0.0012 25.7 2.5 16 50-65 3-18 (244)
330 smart00851 MGS MGS-like domain 27.9 1.1E+02 0.0024 19.7 3.6 15 150-164 3-17 (90)
331 cd06536 CIDE_N_ICAD CIDE_N dom 27.6 39 0.00084 21.7 1.3 15 51-65 43-57 (80)
332 PF00588 SpoU_methylase: SpoU 27.6 61 0.0013 22.9 2.5 51 143-197 58-108 (142)
333 PF01740 STAS: STAS domain; I 27.5 94 0.002 20.9 3.4 37 149-186 69-105 (117)
334 PRK03692 putative UDP-N-acetyl 27.2 2.6E+02 0.0057 22.1 6.2 22 150-171 95-116 (243)
335 PRK11508 sulfur transfer prote 27.0 2.1E+02 0.0046 19.6 6.6 38 51-88 7-44 (109)
336 PF13686 DrsE_2: DsrE/DsrF/Drs 27.0 58 0.0013 23.6 2.3 24 146-169 90-113 (148)
337 PF01380 SIS: SIS domain SIS d 26.9 80 0.0017 21.5 3.0 25 146-170 66-90 (131)
338 PF11848 DUF3368: Domain of un 26.7 55 0.0012 18.5 1.7 20 144-163 16-35 (48)
339 cd05013 SIS_RpiR RpiR-like pro 26.3 67 0.0015 22.0 2.5 24 147-170 74-97 (139)
340 TIGR02494 PFLE_PFLC glycyl-rad 26.3 53 0.0011 26.6 2.2 28 143-170 136-164 (295)
341 TIGR03342 dsrC_tusE_dsvC sulfu 26.2 2.2E+02 0.0048 19.5 6.6 38 51-88 6-43 (108)
342 cd06592 GH31_glucosidase_KIAA1 26.1 90 0.002 25.5 3.5 25 144-168 67-91 (303)
343 PF06901 FrpC: RTX iron-regula 26.0 35 0.00075 25.9 1.0 17 51-67 59-75 (271)
344 PF03033 Glyco_transf_28: Glyc 26.0 1.5E+02 0.0032 20.5 4.3 33 149-183 15-47 (139)
345 cd08573 GDPD_GDE1 Glycerophosp 26.0 1.3E+02 0.0028 23.9 4.3 34 150-183 218-252 (258)
346 PRK13937 phosphoheptose isomer 25.7 75 0.0016 23.9 2.8 26 145-170 118-143 (188)
347 KOG3189 Phosphomannomutase [Li 25.6 62 0.0013 25.0 2.2 49 143-193 27-76 (252)
348 PF01755 Glyco_transf_25: Glyc 25.4 1.4E+02 0.003 22.3 4.3 39 187-229 60-98 (200)
349 cd05005 SIS_PHI Hexulose-6-pho 25.4 77 0.0017 23.4 2.8 27 145-171 87-113 (179)
350 cd06591 GH31_xylosidase_XylS X 25.3 94 0.002 25.6 3.5 25 144-168 63-87 (319)
351 cd06594 GH31_glucosidase_YihQ 25.3 95 0.0021 25.6 3.5 25 144-168 68-92 (317)
352 cd06599 GH31_glycosidase_Aec37 25.1 96 0.0021 25.6 3.5 25 144-168 70-94 (317)
353 COG1816 Add Adenosine deaminas 24.7 2.2E+02 0.0047 24.0 5.5 67 151-217 237-310 (345)
354 KOG0780 Signal recognition par 24.6 4E+02 0.0087 23.1 6.9 80 144-226 139-223 (483)
355 cd06598 GH31_transferase_CtsZ 24.3 95 0.0021 25.6 3.4 25 144-168 67-91 (317)
356 cd06538 CIDE_N_FSP27 CIDE_N do 24.1 49 0.0011 21.2 1.3 15 51-65 40-54 (79)
357 KOG3107 Predicted haloacid deh 24.1 1.6E+02 0.0035 25.2 4.5 61 160-226 370-433 (468)
358 cd06593 GH31_xylosidase_YicI Y 24.1 1E+02 0.0022 25.2 3.5 25 144-168 63-87 (308)
359 TIGR00441 gmhA phosphoheptose 23.8 83 0.0018 22.7 2.6 25 146-170 92-116 (154)
360 PF13439 Glyco_transf_4: Glyco 23.7 1.1E+02 0.0023 21.6 3.3 23 149-171 18-40 (177)
361 cd06597 GH31_transferase_CtsY 23.6 1.1E+02 0.0023 25.6 3.6 25 144-168 82-106 (340)
362 COG4868 Uncharacterized protei 23.5 3E+02 0.0066 23.0 5.9 64 149-215 55-135 (493)
363 PRK08005 epimerase; Validated 23.4 3.5E+02 0.0077 20.9 6.6 60 147-212 93-158 (210)
364 PLN02951 Molybderin biosynthes 23.4 1.5E+02 0.0033 25.1 4.5 42 142-183 116-161 (373)
365 COG3727 Vsr DNA G:T-mismatch r 23.2 1.1E+02 0.0024 21.8 2.9 57 1-64 14-70 (150)
366 cd07042 STAS_SulP_like_sulfate 23.2 2E+02 0.0043 18.6 4.3 37 150-187 63-99 (107)
367 PF13588 HSDR_N_2: Type I rest 23.1 90 0.0019 21.0 2.6 26 147-172 68-93 (112)
368 PF01114 Colipase: Colipase, N 22.9 9.9 0.00022 20.7 -1.7 10 4-13 20-29 (40)
369 COG1922 WecG Teichoic acid bio 22.8 3.6E+02 0.0078 21.6 6.1 58 149-212 97-157 (253)
370 TIGR03859 PQQ_PqqD coenzyme PQ 22.8 59 0.0013 20.8 1.5 35 125-161 45-79 (81)
371 PF04977 DivIC: Septum formati 22.4 1.3E+02 0.0029 18.5 3.1 15 201-215 53-68 (80)
372 TIGR00761 argB acetylglutamate 22.4 1.8E+02 0.0039 22.5 4.5 36 149-184 18-53 (231)
373 TIGR00664 DNA_III_psi DNA poly 22.3 82 0.0018 22.5 2.2 60 155-218 8-67 (133)
374 COG1763 MobB Molybdopterin-gua 21.7 1.1E+02 0.0023 22.6 2.9 20 149-168 19-38 (161)
375 cd06603 GH31_GANC_GANAB_alpha 21.6 1.2E+02 0.0026 25.2 3.5 25 144-168 61-85 (339)
376 cd06844 STAS Sulphate Transpor 21.5 2.3E+02 0.0049 18.4 4.3 36 149-185 60-95 (100)
377 cd08585 GDPD_like_3 Glyceropho 21.2 1.4E+02 0.0031 23.3 3.7 35 151-186 199-235 (237)
378 PRK08883 ribulose-phosphate 3- 21.0 4E+02 0.0087 20.7 6.4 33 147-179 93-128 (220)
379 PF13712 Glyco_tranf_2_5: Glyc 21.0 1.6E+02 0.0035 22.7 3.9 64 162-230 2-68 (217)
380 PRK06100 DNA polymerase III su 20.9 2.1E+02 0.0045 20.4 4.1 60 155-217 8-69 (132)
381 PF10740 DUF2529: Protein of u 20.9 68 0.0015 23.9 1.7 25 147-171 95-120 (172)
382 cd08564 GDPD_GsGDE_like Glycer 20.9 1.8E+02 0.004 23.0 4.3 39 149-191 212-254 (265)
383 PF13394 Fer4_14: 4Fe-4S singl 20.8 33 0.00072 23.3 0.0 27 147-173 65-93 (119)
384 smart00481 POLIIIAc DNA polyme 20.6 2E+02 0.0044 17.0 4.5 22 149-170 17-38 (67)
385 PF02017 CIDE-N: CIDE-N domain 20.6 56 0.0012 20.9 1.0 15 51-65 41-55 (78)
386 PF12990 DUF3874: Domain of un 20.5 1.7E+02 0.0036 18.5 3.1 33 149-183 28-61 (73)
387 TIGR00222 panB 3-methyl-2-oxob 20.4 2.4E+02 0.0051 22.8 4.7 40 152-195 6-45 (263)
388 PF00931 NB-ARC: NB-ARC domain 20.4 3.3E+02 0.0071 21.5 5.8 66 149-215 5-77 (287)
389 COG0424 Maf Nucleotide-binding 20.3 4E+02 0.0087 20.4 5.8 21 161-182 3-23 (193)
390 PRK00414 gmhA phosphoheptose i 20.3 1.1E+02 0.0024 23.1 2.8 26 145-170 123-148 (192)
391 TIGR02803 ExbD_1 TonB system t 20.3 97 0.0021 21.4 2.3 26 143-168 95-121 (122)
392 PRK08745 ribulose-phosphate 3- 20.3 4.3E+02 0.0092 20.6 6.9 58 147-210 97-160 (223)
393 PRK11081 tRNA guanosine-2'-O-m 20.2 1.9E+02 0.0041 22.7 4.1 27 143-169 73-99 (229)
394 PF02353 CMAS: Mycolic acid cy 20.2 3.1E+02 0.0067 22.1 5.5 66 148-213 72-157 (273)
395 COG1126 GlnQ ABC-type polar am 20.1 1.5E+02 0.0033 23.3 3.4 36 144-179 170-205 (240)
No 1
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.96 E-value=2.6e-27 Score=182.46 Aligned_cols=176 Identities=39% Similarity=0.664 Sum_probs=131.1
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCC---Chhhhcc-CCCcHHHHHHHHHHhcC---
Q 026879 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAP---WPEKLRY-EGDGRPFWRLVVSEATG--- 123 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~--- 123 (231)
|+|+||+||||+|+...+..++.+++.++|.+.+.+++...|....... ++..... +.....++...+.....
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999877665544433322211 1111111 22333344444333211
Q ss_pred CC----ChHHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcCCCCC
Q 026879 124 CT----NDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEK 199 (231)
Q Consensus 124 ~~----~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~~~K 199 (231)
.. ..+..+.+++.+.......++||+.++|+.|+++|++++|+||++..+...++.+|+.++||.++++++++..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~~~~l~~~~l~~~fd~i~~s~~~~~~K 160 (203)
T TIGR02252 81 VPDPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSRLRGLLEALGLLEYFDFVVTSYEVGAEK 160 (203)
T ss_pred CCCchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHCCcHHhcceEEeecccCCCC
Confidence 11 22333444444443344689999999999999999999999998876777899999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 200 PDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 200 P~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
|+|++|+++++++|++|+ +|++|+|+.
T Consensus 161 P~~~~~~~~~~~~~~~~~-~~~~IgD~~ 187 (203)
T TIGR02252 161 PDPKIFQEALERAGISPE-EALHIGDSL 187 (203)
T ss_pred CCHHHHHHHHHHcCCChh-HEEEECCCc
Confidence 999999999999999998 999999985
No 2
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.95 E-value=2.4e-27 Score=184.37 Aligned_cols=165 Identities=24% Similarity=0.339 Sum_probs=127.7
Q ss_pred cccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCC--C
Q 026879 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT--N 126 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 126 (231)
++++||||+||||+|+.+.+.++|.+++.++|+..+.+.....+.. .....+........... .
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~--------------~~~~~~~~~~~~~~~~~~~~ 66 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGG--------------GIARIIDLLRKLAAGEDPAD 66 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCC--------------ChHHHHHHHHHHhcCCcccC
Confidence 3789999999999999999999999999999999887766553211 11111122222222211 1
Q ss_pred hHHHHH-HHHHHH-cCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHH
Q 026879 127 DDYFEE-VYEYYA-KGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (231)
Q Consensus 127 ~~~~~~-~~~~~~-~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~ 203 (231)
...... ..+... ......++||+.++|+.|+++|+++++.||+++. +...|+.+|+.++|+.+++++++...||+|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd 146 (221)
T COG0637 67 LAELERLLYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPD 146 (221)
T ss_pred HHHHHHHHHHHHHhhhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCH
Confidence 111222 222221 2344799999999999999999999999998876 7999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccceeeCCCce
Q 026879 204 IFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
+|.++++++|+.|+ +|++|+|+..
T Consensus 147 ~yL~Aa~~Lgv~P~-~CvviEDs~~ 170 (221)
T COG0637 147 IYLLAAERLGVDPE-ECVVVEDSPA 170 (221)
T ss_pred HHHHHHHHcCCChH-HeEEEecchh
Confidence 99999999999999 9999999864
No 3
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.95 E-value=1.8e-26 Score=182.84 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=122.1
Q ss_pred cccccEEEEecCCccccccccHHHHHHHHHHHhCC----CCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhc
Q 026879 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGL----NVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT 122 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (231)
++++++|+||+||||+|+...+..+|.+++.++|. +.+.+.+... ..+... ...+...+....
T Consensus 19 ~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~---~~G~~~----------~~~~~~~~~~~~ 85 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVEN---IAGKHN----------EDIALGLFPDDL 85 (248)
T ss_pred cCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHH---cCCCCH----------HHHHHHHcCcch
Confidence 45689999999999999999999999999999864 3344332221 111111 111111111000
Q ss_pred CCCChHHHHHHHHHHHc--CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCC
Q 026879 123 GCTNDDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEK 199 (231)
Q Consensus 123 ~~~~~~~~~~~~~~~~~--~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~K 199 (231)
. ...+........|.. .....++||+.++|+.|+++|++++|+||+... +...++.+|+.++||.++++++++..|
T Consensus 86 ~-~~~~~~~~~~~~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~K 164 (248)
T PLN02770 86 E-RGLKFTDDKEALFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAK 164 (248)
T ss_pred h-hHHHHHHHHHHHHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCC
Confidence 0 001111122222222 134689999999999999999999999998876 789999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 200 PDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 200 P~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
|+|++|.++++++|++|+ +|++|+|+..
T Consensus 165 P~p~~~~~a~~~~~~~~~-~~l~vgDs~~ 192 (248)
T PLN02770 165 PHPDPYLKALEVLKVSKD-HTFVFEDSVS 192 (248)
T ss_pred CChHHHHHHHHHhCCChh-HEEEEcCCHH
Confidence 999999999999999998 9999999864
No 4
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.94 E-value=9.4e-26 Score=185.57 Aligned_cols=166 Identities=17% Similarity=0.215 Sum_probs=124.3
Q ss_pred cccEEEEecCCccccccc-cHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcC-CCC
Q 026879 49 AYDAVLLDAGGTLLQLAE-PVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATG-CTN 126 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 126 (231)
..++||||+||||+|+.+ .+..+|.+++.++|.+.+.++.... ..+ ......+..++..... ...
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~---~~G----------~~~~~~l~~ll~~~~~~~~~ 196 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRR---VEG----------MKNEQAISEVLCWSRDPAEL 196 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHH---hcC----------CCHHHHHHHHhhccCCHHHH
Confidence 689999999999999987 4556999999999988765543322 111 1112222222211100 011
Q ss_pred hHHHHHHHHHHHc--CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHH
Q 026879 127 DDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (231)
Q Consensus 127 ~~~~~~~~~~~~~--~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~ 203 (231)
+++.+.+.+.|.. .....++||+.++|+.|+++|++++|+||+... +...++.+|+.++||.++++++++..||+|+
T Consensus 197 e~l~~~~~~~y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Pe 276 (381)
T PLN02575 197 RRMATRKEEIYQALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPE 276 (381)
T ss_pred HHHHHHHHHHHHHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHH
Confidence 2233333344432 133689999999999999999999999999876 7999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccceeeCCCce
Q 026879 204 IFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
+|..+++++|+.|+ +|++|+|+..
T Consensus 277 ifl~A~~~lgl~Pe-ecl~IGDS~~ 300 (381)
T PLN02575 277 MFIYAAQLLNFIPE-RCIVFGNSNQ 300 (381)
T ss_pred HHHHHHHHcCCCcc-cEEEEcCCHH
Confidence 99999999999999 8999999753
No 5
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.94 E-value=1.6e-26 Score=185.23 Aligned_cols=177 Identities=11% Similarity=0.113 Sum_probs=121.5
Q ss_pred cccccEEEEecCCcccccccc-HHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCC
Q 026879 47 KKAYDAVLLDAGGTLLQLAEP-VEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT 125 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (231)
||++|+|+||+||||+|+... +..++.+++.++|.+.+.+++...+ +................. ..+....+..
T Consensus 1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~----G~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 75 (267)
T PRK13478 1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPM----GLGKWDHIRALLKMPRVA-ARWQAVFGRL 75 (267)
T ss_pred CCceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhc----CCCHHHHHHHHHhcHHHH-HHHHHHhCCC
Confidence 567899999999999998654 3679999999999877665543322 111100000000000000 1111122211
Q ss_pred -ChH----HHHHHHHHHHc--CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccc-cEEEecCcCC
Q 026879 126 -NDD----YFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF-DAVVISSEVG 196 (231)
Q Consensus 126 -~~~----~~~~~~~~~~~--~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~f-d~ii~s~~~~ 196 (231)
..+ ....+.+.+.. .....++||+.++|+.|+++|++++|+||+... +...++.+++.++| |.++++++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~ 155 (267)
T PRK13478 76 PTEADVDALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVP 155 (267)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCC
Confidence 112 22222222221 133689999999999999999999999998876 68889999998875 8999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 197 CEKPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 197 ~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
..||+|++|.++++++|+.+.++|++|+|+..
T Consensus 156 ~~KP~p~~~~~a~~~l~~~~~~e~l~IGDs~~ 187 (267)
T PRK13478 156 AGRPYPWMALKNAIELGVYDVAACVKVDDTVP 187 (267)
T ss_pred CCCCChHHHHHHHHHcCCCCCcceEEEcCcHH
Confidence 99999999999999999975338999999864
No 6
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.94 E-value=1.2e-25 Score=175.38 Aligned_cols=170 Identities=23% Similarity=0.256 Sum_probs=121.9
Q ss_pred ccEEEEecCCccccccccHHHHHHHH---HHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCC
Q 026879 50 YDAVLLDAGGTLLQLAEPVEETYASI---ARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTN 126 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (231)
+++|+||+||||+|+.+.+..++..+ +..+|.+.+.+++...+........... ......+..... ....
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~ 74 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNY---PTHFDYLIRRLW----EEYN 74 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhcccc---CcchHHHHHHHh----hhcC
Confidence 68999999999999998887777655 4566777777776665543322111100 001111111111 1111
Q ss_pred hHHHHHHHHHHHc--CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHH
Q 026879 127 DDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (231)
Q Consensus 127 ~~~~~~~~~~~~~--~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~ 203 (231)
.+........+.. ...+.++||+.++|+.|+++|++++|+||+... +...++.+|+.++||.++++++++..||+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~ 154 (221)
T TIGR02253 75 PKLVAAFVYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPK 154 (221)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHH
Confidence 1222222222111 233689999999999999999999999999865 6888999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccceeeCCCc
Q 026879 204 IFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
+|+++++++|++|+ +|++|+|+.
T Consensus 155 ~~~~~~~~~~~~~~-~~~~igDs~ 177 (221)
T TIGR02253 155 IFYAALKRLGVKPE-EAVMVGDRL 177 (221)
T ss_pred HHHHHHHHcCCChh-hEEEECCCh
Confidence 99999999999988 999999986
No 7
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.94 E-value=7.5e-26 Score=179.80 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=121.8
Q ss_pred cccEEEEecCCcccccc-ccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCC-CC
Q 026879 49 AYDAVLLDAGGTLLQLA-EPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC-TN 126 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 126 (231)
.+|+||||+||||+|+. ..+..+|.+++.++|.+.+.++.... ..+.. ....+...+...... ..
T Consensus 23 ~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~---~~G~~----------~~~~~~~l~~~~~~~~~~ 89 (260)
T PLN03243 23 GWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKR---AEGMK----------NEQAISEVLCWSRDFLQM 89 (260)
T ss_pred CceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHH---hcCCC----------HHHHHHHHhccCCCHHHH
Confidence 58999999999999996 45667999999999988765544321 11211 112222211100000 01
Q ss_pred hHHHHHHHHHH--HcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHH
Q 026879 127 DDYFEEVYEYY--AKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (231)
Q Consensus 127 ~~~~~~~~~~~--~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~ 203 (231)
++........| .......++||+.++|+.|+++|++++|+||+... +...++++|+.++|+.++++++++..||+|+
T Consensus 90 ~~l~~~~~~~~~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe 169 (260)
T PLN03243 90 KRLAIRKEDLYEYMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPE 169 (260)
T ss_pred HHHHHHHHHHHHHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHH
Confidence 11122111222 11234689999999999999999999999998876 7889999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccceeeCCCce
Q 026879 204 IFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
+|.++++++|+.|+ +|++|+|+..
T Consensus 170 ~~~~a~~~l~~~p~-~~l~IgDs~~ 193 (260)
T PLN03243 170 MFMYAAERLGFIPE-RCIVFGNSNS 193 (260)
T ss_pred HHHHHHHHhCCChH-HeEEEcCCHH
Confidence 99999999999998 9999999864
No 8
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.94 E-value=2.4e-26 Score=182.94 Aligned_cols=173 Identities=13% Similarity=0.179 Sum_probs=121.2
Q ss_pred ccEEEEecCCcccccccc-HHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCC-CCh
Q 026879 50 YDAVLLDAGGTLLQLAEP-VEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC-TND 127 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 127 (231)
+++|+||+||||+|+... +..++.+++.++|.+.+.+++...+ +...................+. ...+. ..+
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~----G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 76 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPM----GLGKWDHIRALLKMPAVAERWR-AKFGRLPTE 76 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhc----CccHHHHHHHHhcCHHHHHHHH-HHhCCCCCH
Confidence 689999999999998653 5779999999999887766554322 1111111110000111111111 11111 112
Q ss_pred HHHHHHHHHH----Hc--CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccc-cEEEecCcCCCCC
Q 026879 128 DYFEEVYEYY----AK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF-DAVVISSEVGCEK 199 (231)
Q Consensus 128 ~~~~~~~~~~----~~--~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~f-d~ii~s~~~~~~K 199 (231)
+..+.+++.| .. .....++||+.++|+.|+++|++++|+||+... +..+++.+|+.++| |.++++++++..|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~K 156 (253)
T TIGR01422 77 ADIEAIYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGR 156 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCC
Confidence 2222222222 11 134689999999999999999999999998876 68899999999986 9999999999999
Q ss_pred CCHHHHHHHHHhcCCC-CCccceeeCCCce
Q 026879 200 PDPRIFKAALGTSEHG-FQLSCSVMPSSLF 228 (231)
Q Consensus 200 P~~~~~~~~~~~~~~~-~~~~~~v~~d~~~ 228 (231)
|+|++|.++++++|+. |+ +|++|+|+..
T Consensus 157 P~p~~~~~a~~~l~~~~~~-~~l~IGDs~~ 185 (253)
T TIGR01422 157 PAPWMALKNAIELGVYDVA-ACVKVGDTVP 185 (253)
T ss_pred CCHHHHHHHHHHcCCCCch-heEEECCcHH
Confidence 9999999999999996 66 9999999864
No 9
>PRK09449 dUMP phosphatase; Provisional
Probab=99.94 E-value=3e-25 Score=173.50 Aligned_cols=174 Identities=22% Similarity=0.274 Sum_probs=121.4
Q ss_pred ccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHH---HHHHHhcCC
Q 026879 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWR---LVVSEATGC 124 (231)
Q Consensus 48 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 124 (231)
|++|+|+||+||||+|.. ...++.+++..+|.+.+.+.+.. +.......+............+.. .......+.
T Consensus 1 m~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T PRK09449 1 MKYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFTAEDFQD-YQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNV 77 (224)
T ss_pred CCccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCcHHHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC
Confidence 468999999999999853 35688888999998766554432 221111111111111111111111 111222232
Q ss_pred CChHHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHH
Q 026879 125 TNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~ 203 (231)
..++..+.+.+.+.. ...++||+.++|+.|+ +|++++|+||+... +...++.+|+.++||.++++++++..||+|+
T Consensus 78 ~~~~~~~~~~~~~~~--~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~ 154 (224)
T PRK09449 78 TPGELNSAFLNAMAE--ICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVA 154 (224)
T ss_pred CHHHHHHHHHHHHhh--cCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHH
Confidence 333333334344432 2579999999999999 57999999998876 5888999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccceeeCCCc
Q 026879 204 IFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
+|+++++++|+.|.++|++|+|+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~vgD~~ 178 (224)
T PRK09449 155 IFDYALEQMGNPDRSRVLMVGDNL 178 (224)
T ss_pred HHHHHHHHcCCCCcccEEEEcCCc
Confidence 999999999987755899999986
No 10
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.94 E-value=9.5e-26 Score=176.79 Aligned_cols=165 Identities=20% Similarity=0.185 Sum_probs=123.1
Q ss_pred cccEEEEecCCccccccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCCh
Q 026879 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTND 127 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (231)
++++|+||+||||+|+.+.+..++..++.++|.+ .+.+.+...+.... ...+............+
T Consensus 11 ~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~~~~ 76 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGA--------------RAMLAVAFPELDAAARD 76 (229)
T ss_pred cCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHH--------------HHHHHHHhccCChHHHH
Confidence 3589999999999999999999999999999976 45444433221111 11111110000000112
Q ss_pred HHHHHHHHHHHcC--CCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHH
Q 026879 128 DYFEEVYEYYAKG--EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRI 204 (231)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~ 204 (231)
+..+.+.+.|... ....++||+.++|+.|+++|++++|+||+... ....++.+|+.++|+.++++++.+..||+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~ 156 (229)
T PRK13226 77 ALIPEFLQRYEALIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLP 156 (229)
T ss_pred HHHHHHHHHHHHhhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHH
Confidence 3333344444331 33689999999999999999999999998876 57789999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccceeeCCCce
Q 026879 205 FKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 205 ~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
|.++++++|++|+ +|++|+|+..
T Consensus 157 ~~~~~~~l~~~p~-~~l~IGDs~~ 179 (229)
T PRK13226 157 LLVAAERIGVAPT-DCVYVGDDER 179 (229)
T ss_pred HHHHHHHhCCChh-hEEEeCCCHH
Confidence 9999999999998 9999999863
No 11
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.94 E-value=2.2e-25 Score=173.81 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=126.0
Q ss_pred ccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCC---C
Q 026879 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT---N 126 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 126 (231)
+|+|+||+||||+|+.+.+..++.+++.++|.+.+.++....+ . +......+...+.. .+.. .
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~----------g~~~~~~~~~~~~~-~~~~~~~~ 66 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAW---M----------GQSKIEAIRALLAL-DGADEAEA 66 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhh---c----------CCCHHHHHHHHHhc-cCCCHHHH
Confidence 5789999999999999999999999999999987766554421 1 11222333333322 1111 1
Q ss_pred hHHHHHHHHHHHc---CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc--ccccEEEecCcCCCCCC
Q 026879 127 DDYFEEVYEYYAK---GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI--DLFDAVVISSEVGCEKP 200 (231)
Q Consensus 127 ~~~~~~~~~~~~~---~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~--~~fd~ii~s~~~~~~KP 200 (231)
++....+.+.|.. .....++||+.++|+.|+++|++++|+||+... +...++.+|+. ++|+.++++++.+..||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP 146 (220)
T TIGR03351 67 QAAFADFEERLAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRP 146 (220)
T ss_pred HHHHHHHHHHHHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCC
Confidence 2223333333332 234689999999999999999999999999876 78999999999 99999999999999999
Q ss_pred CHHHHHHHHHhcCCC-CCccceeeCCCce
Q 026879 201 DPRIFKAALGTSEHG-FQLSCSVMPSSLF 228 (231)
Q Consensus 201 ~~~~~~~~~~~~~~~-~~~~~~v~~d~~~ 228 (231)
+|++|..+++++|+. |+ +|++|+|+..
T Consensus 147 ~p~~~~~a~~~~~~~~~~-~~~~igD~~~ 174 (220)
T TIGR03351 147 APDLILRAMELTGVQDVQ-SVAVAGDTPN 174 (220)
T ss_pred CHHHHHHHHHHcCCCChh-HeEEeCCCHH
Confidence 999999999999998 56 9999999863
No 12
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.94 E-value=1.3e-25 Score=174.49 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=122.5
Q ss_pred ccccEEEEecCCccccccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCC
Q 026879 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTN 126 (231)
Q Consensus 48 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (231)
|++++|+||+||||+|+...+..++.+++.+++.. .+.+.+...+. . .....+... .....
T Consensus 1 m~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G----~----------~~~~~~~~~----~~~~~ 62 (214)
T PRK13288 1 MKINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIG----P----------SLHDTFSKI----DESKV 62 (214)
T ss_pred CCccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC----c----------CHHHHHHhc----CHHHH
Confidence 46899999999999999999999999999998764 45555544321 1 111111111 01111
Q ss_pred hHHHHHHHHHHHc--CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHH
Q 026879 127 DDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (231)
Q Consensus 127 ~~~~~~~~~~~~~--~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~ 203 (231)
+.....+...+.. .....++||+.++|+.|+++|++++|+||+... +...++.+|+.++|+.++++++.+..||+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~ 142 (214)
T PRK13288 63 EEMITTYREFNHEHHDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPE 142 (214)
T ss_pred HHHHHHHHHHHHHhhhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcH
Confidence 2222222222221 133689999999999999999999999998876 7889999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccceeeCCCc
Q 026879 204 IFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
+|.++++++|++|+ +|++|+|+.
T Consensus 143 ~~~~~~~~~~~~~~-~~~~iGDs~ 165 (214)
T PRK13288 143 PVLKALELLGAKPE-EALMVGDNH 165 (214)
T ss_pred HHHHHHHHcCCCHH-HEEEECCCH
Confidence 99999999999988 999999985
No 13
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.94 E-value=3.3e-25 Score=173.08 Aligned_cols=165 Identities=16% Similarity=0.263 Sum_probs=124.2
Q ss_pred cccEEEEecCCccccccccHHHHHHHHHHHhCCCCCH-HHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhc--CCC
Q 026879 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDS-ADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT--GCT 125 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 125 (231)
++++|+||+||||+|+.+.+..++.+++.++|.+.+. +.+...+ +. ........+..... ...
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~----g~----------~~~~~~~~~~~~~~~~~~~ 71 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTL----GL----------RIDQVVDLWYARQPWNGPS 71 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhh----CC----------CHHHHHHHHHHhcCCCCCC
Confidence 5899999999999999999999999999999987654 3332211 11 11111111111111 111
Q ss_pred ChHHHHHHHHHHHc--CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCH
Q 026879 126 NDDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202 (231)
Q Consensus 126 ~~~~~~~~~~~~~~--~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~ 202 (231)
.+...+.+.+.+.. .....++||+.++|+.|+++|++++|+||+... +...++.+++.++|+.++++++++..||+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~ 151 (222)
T PRK10826 72 RQEVVQRIIARVISLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHP 151 (222)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCH
Confidence 22333333333322 133689999999999999999999999998876 688999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCccceeeCCCce
Q 026879 203 RIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
++|+.+++++|+.|+ +|++|+|+..
T Consensus 152 ~~~~~~~~~~~~~~~-~~~~igDs~~ 176 (222)
T PRK10826 152 EVYLNCAAKLGVDPL-TCVALEDSFN 176 (222)
T ss_pred HHHHHHHHHcCCCHH-HeEEEcCChh
Confidence 999999999999998 9999999864
No 14
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.93 E-value=3.7e-25 Score=168.43 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=122.1
Q ss_pred cccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCC-C
Q 026879 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC-T 125 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 125 (231)
|.++++|+||+||||+|+...+..++.+++.++|.+.+.+..... . +......+..+....... .
T Consensus 2 ~~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~----~----------g~~~~~~~~~~~~~~~~~~~ 67 (188)
T PRK10725 2 YDRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVAL----N----------GSPTWRIAQAIIELNQADLD 67 (188)
T ss_pred CCcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHh----c----------CCCHHHHHHHHHHHhCCCCC
Confidence 446899999999999999999999999999999987665433321 1 111122233333221111 1
Q ss_pred ChHHHHHHHHHHHc--CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCH
Q 026879 126 NDDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202 (231)
Q Consensus 126 ~~~~~~~~~~~~~~--~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~ 202 (231)
.+.........+.. .....++|+ .++|..|++. ++++|+||+... +...++.+|+.++||.++++++++..||+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p 145 (188)
T PRK10725 68 PHALAREKTEAVKSMLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAP 145 (188)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCCh
Confidence 22222222222211 133578885 6899999876 899999998876 689999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCccceeeCCCcee
Q 026879 203 RIFKAALGTSEHGFQLSCSVMPSSLFM 229 (231)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~d~~~~ 229 (231)
++|+++++++|++|+ +|++|+|+..=
T Consensus 146 ~~~~~~~~~~~~~~~-~~l~igDs~~d 171 (188)
T PRK10725 146 DTFLRCAQLMGVQPT-QCVVFEDADFG 171 (188)
T ss_pred HHHHHHHHHcCCCHH-HeEEEeccHhh
Confidence 999999999999988 99999998653
No 15
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.93 E-value=9.1e-25 Score=170.46 Aligned_cols=165 Identities=17% Similarity=0.227 Sum_probs=122.8
Q ss_pred cccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCC-
Q 026879 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT- 125 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 125 (231)
||++++|+||+||||+|+...+..++.+++.++|.+.+.+++...+. +......+..+........
T Consensus 1 ~~~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~~~ 67 (221)
T PRK10563 1 MSQIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFK-------------GVKLYEIIDIISKEHGVTLA 67 (221)
T ss_pred CCCCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhc-------------CCCHHHHHHHHHHHhCCCCC
Confidence 35689999999999999998888999999999998876655433221 1112233344333221112
Q ss_pred ChHHHHHHHHHHHc--CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcccccc-EEEecCcCCCCCCC
Q 026879 126 NDDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFD-AVVISSEVGCEKPD 201 (231)
Q Consensus 126 ~~~~~~~~~~~~~~--~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd-~ii~s~~~~~~KP~ 201 (231)
.++..+.+.+.+.. .....++||+.++|+.|+ ++++|+||++.. +...++.+|+.++|+ .++++++++..||+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~---~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~ 144 (221)
T PRK10563 68 KAELEPVYRAEVARLFDSELEPIAGANALLESIT---VPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPD 144 (221)
T ss_pred HHHHHHHHHHHHHHHHHccCCcCCCHHHHHHHcC---CCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCC
Confidence 23332232222211 234689999999999993 899999999876 788999999999996 67788889999999
Q ss_pred HHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 202 PRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
|++|+.+++++|++|+ +|++|+|+..
T Consensus 145 p~~~~~a~~~~~~~p~-~~l~igDs~~ 170 (221)
T PRK10563 145 PALMFHAAEAMNVNVE-NCILVDDSSA 170 (221)
T ss_pred hHHHHHHHHHcCCCHH-HeEEEeCcHh
Confidence 9999999999999988 9999999864
No 16
>PRK11587 putative phosphatase; Provisional
Probab=99.93 E-value=3.3e-25 Score=172.57 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=117.1
Q ss_pred ccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCCh
Q 026879 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTND 127 (231)
Q Consensus 48 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (231)
|++++|+||+||||+|+.+.+..++.+++.++|.+. ++.... ..+. .....+..+.. ....+
T Consensus 1 M~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~--~~~~~~---~~g~----------~~~~~~~~~~~---~~~~~ 62 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP--DEVLNF---IHGK----------QAITSLRHFMA---GASEA 62 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH--HHHHHH---HcCC----------CHHHHHHHHhc---cCCcH
Confidence 468999999999999999999999999999999863 222221 1111 11111121111 11112
Q ss_pred HHHHHHHH--HHHc--CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCH
Q 026879 128 DYFEEVYE--YYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202 (231)
Q Consensus 128 ~~~~~~~~--~~~~--~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~ 202 (231)
...+.+.. .+.. .....++||+.++|+.|+++|++++|+||+... ....++..++ .+|+.++++++++..||+|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~~i~~~~~~~~~KP~p 141 (218)
T PRK11587 63 EIQAEFTRLEQIEATDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPEVFVTAERVKRGKPEP 141 (218)
T ss_pred HHHHHHHHHHHHHHhhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCccEEEEHHHhcCCCCCc
Confidence 22121111 1111 234689999999999999999999999998765 5777888888 5688999999999999999
Q ss_pred HHHHHHHHhcCCCCCccceeeCCCce
Q 026879 203 RIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
++|..+++++|+.|+ +|++|+|+..
T Consensus 142 ~~~~~~~~~~g~~p~-~~l~igDs~~ 166 (218)
T PRK11587 142 DAYLLGAQLLGLAPQ-ECVVVEDAPA 166 (218)
T ss_pred HHHHHHHHHcCCCcc-cEEEEecchh
Confidence 999999999999998 9999999874
No 17
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.93 E-value=6.9e-25 Score=168.39 Aligned_cols=182 Identities=37% Similarity=0.502 Sum_probs=149.5
Q ss_pred cccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhC---CChhh--hccCCCcHHHHHHHHHHh
Q 026879 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAA---PWPEK--LRYEGDGRPFWRLVVSEA 121 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~ 121 (231)
.|.+++|+||++|||+...+.....|..+.+.+|.+.+.+.....+...... ..+.. ........+||..++...
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~ 83 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVEST 83 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHH
Confidence 5689999999999999988888999999999999997778888877666643 22222 222236688999888887
Q ss_pred cCCCChHHHHHHH-----HHHHcC--CCcccCCCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCc
Q 026879 122 TGCTNDDYFEEVY-----EYYAKG--EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSE 194 (231)
Q Consensus 122 ~~~~~~~~~~~~~-----~~~~~~--~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~ 194 (231)
+.....+..+... +.|... ..+...+++.++|+.||.+|+.++++||.+...+..+..+|+..+||.++.|++
T Consensus 84 f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~~~l~~~~l~~~fD~vv~S~e 163 (237)
T KOG3085|consen 84 FGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLRLLLLPLGLSAYFDFVVESCE 163 (237)
T ss_pred hccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHHHHhhccCHHHhhhhhhhhhh
Confidence 7765554444444 222221 356788999999999999999999999999998899999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCccceeeCCCcee
Q 026879 195 VGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSLFM 229 (231)
Q Consensus 195 ~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 229 (231)
+|..||+|.||+.+++.+++.|+ +|++++|...+
T Consensus 164 ~g~~KPDp~If~~al~~l~v~Pe-e~vhIgD~l~n 197 (237)
T KOG3085|consen 164 VGLEKPDPRIFQLALERLGVKPE-ECVHIGDLLEN 197 (237)
T ss_pred hccCCCChHHHHHHHHHhCCChH-HeEEecCcccc
Confidence 99999999999999999999999 99999998765
No 18
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.93 E-value=3.3e-25 Score=170.12 Aligned_cols=168 Identities=23% Similarity=0.314 Sum_probs=113.2
Q ss_pred ccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHH-hhhCCChhhhcc-CCCc----HHHHHHHHHHhcC
Q 026879 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRK-AFAAPWPEKLRY-EGDG----RPFWRLVVSEATG 123 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~ 123 (231)
+|+|+||+||||+|+.+. ..++.+++...+... ...|.. .....+...... .... ...+...+.. .+
T Consensus 1 ik~viFD~dgTLiD~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~g 73 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSV-VERFAELYGGRGEAL-----SQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGR-LG 73 (198)
T ss_pred CcEEEEeCCCcCccHHHH-HHHHHHHhCchHHHH-----HHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHH-cC
Confidence 478999999999998754 444444443322111 111111 000000000000 0011 1222222222 23
Q ss_pred CC-ChHHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCC
Q 026879 124 CT-NDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPD 201 (231)
Q Consensus 124 ~~-~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~ 201 (231)
.. ..+..+.+.+.|. .+.++||+.++|+.|+++|++++|+||++.. +...++.+|+.++||.++++++++..||+
T Consensus 74 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~ 150 (198)
T TIGR01428 74 LEDDESAADRLAEAYL---RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPA 150 (198)
T ss_pred CCCCHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCC
Confidence 22 2333445555553 3589999999999999999999999999876 68889999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 202 PRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
|++|+.+++++|++|+ +|++|+|+..
T Consensus 151 ~~~~~~~~~~~~~~p~-~~~~vgD~~~ 176 (198)
T TIGR01428 151 PQVYQLALEALGVPPD-EVLFVASNPW 176 (198)
T ss_pred HHHHHHHHHHhCCChh-hEEEEeCCHH
Confidence 9999999999999998 8999999864
No 19
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.93 E-value=1.8e-24 Score=164.14 Aligned_cols=161 Identities=22% Similarity=0.254 Sum_probs=118.2
Q ss_pred EEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCCh----
Q 026879 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTND---- 127 (231)
Q Consensus 52 ~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 127 (231)
+|+||+||||+|+...+..++.++++.+|.+.+.+..... . +......+...+........+
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~----~----------g~~~~~~~~~~~~~~~~~~~~~~~~ 66 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESL----K----------GVSREDSLERILDLGGKKYSEEEKE 66 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHh----c----------CCChHHHHHHHHHhcCCCCCHHHHH
Confidence 4899999999999999999999999999988665433221 1 111122222222221111111
Q ss_pred HHHHHHHHHHH----cCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcCCCCCCCHH
Q 026879 128 DYFEEVYEYYA----KGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (231)
Q Consensus 128 ~~~~~~~~~~~----~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~ 203 (231)
+..+.+.+.|. ......++||+.++|+.|+++|++++|+||+.. ....++.+|+.++||.++++++++..||+|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~ 145 (185)
T TIGR01990 67 ELAERKNDYYVELLKELTPADVLPGIKNLLDDLKKNNIKIALASASKN-APTVLEKLGLIDYFDAIVDPAEIKKGKPDPE 145 (185)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc-HHHHHHhcCcHhhCcEEEehhhcCCCCCChH
Confidence 12222212222 122357899999999999999999999999643 4668999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccceeeCCCce
Q 026879 204 IFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
+|.+++++++++|+ +|++|+|+..
T Consensus 146 ~~~~~~~~~~~~~~-~~v~vgD~~~ 169 (185)
T TIGR01990 146 IFLAAAEGLGVSPS-ECIGIEDAQA 169 (185)
T ss_pred HHHHHHHHcCCCHH-HeEEEecCHH
Confidence 99999999999988 9999999864
No 20
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.93 E-value=1.7e-24 Score=164.38 Aligned_cols=163 Identities=24% Similarity=0.326 Sum_probs=121.1
Q ss_pred ccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhc-CCCC--
Q 026879 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT-GCTN-- 126 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 126 (231)
+++|+||+||||+|+.+.+..++.+++.++|.+.+.+ .... .. +......+........ ....
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~-~~~~---~~----------g~~~~~~~~~~~~~~~~~~~~~~ 66 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQ-YNTS---LG----------GLSREDILRAILKLRKPGLSLET 66 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHH-HHHH---cC----------CCCHHHHHHHHHHhcCCCCCHHH
Confidence 4789999999999999999999999999999876532 2111 11 1122233333332211 1111
Q ss_pred -hHHHHHHHHHHHc---CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcCCCCCCCH
Q 026879 127 -DDYFEEVYEYYAK---GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202 (231)
Q Consensus 127 -~~~~~~~~~~~~~---~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~ 202 (231)
+...+...+.|.+ .....++||+.++|+.|+++|++++++||+ ..+...++.+|+.++|+.++++++.+..||+|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~-~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~ 145 (185)
T TIGR02009 67 IHQLAERKNELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS-KNADRILAKLGLTDYFDAIVDADEVKEGKPHP 145 (185)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc-hhHHHHHHHcChHHHCCEeeehhhCCCCCCCh
Confidence 1122222222222 233689999999999999999999999998 55788999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCccceeeCCCce
Q 026879 203 RIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
++|.++++++|++|+ +|++|+|+..
T Consensus 146 ~~~~~~~~~~~~~~~-~~v~IgD~~~ 170 (185)
T TIGR02009 146 ETFLLAAELLGVSPN-ECVVFEDALA 170 (185)
T ss_pred HHHHHHHHHcCCCHH-HeEEEeCcHh
Confidence 999999999999988 8999999865
No 21
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.93 E-value=4.1e-24 Score=167.00 Aligned_cols=172 Identities=17% Similarity=0.285 Sum_probs=123.8
Q ss_pred ccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHH----HHHHHHHhcCCC
Q 026879 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPF----WRLVVSEATGCT 125 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 125 (231)
+|+|+||+||||+|+......++.+++.++|.+.+.+.. ..+.......+............+ +....... +..
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMF-AQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEY-NTE 78 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHH-HHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 578999999999999998888999999999987654432 222222221222221111111211 12222222 222
Q ss_pred C-h-HHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCH
Q 026879 126 N-D-DYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202 (231)
Q Consensus 126 ~-~-~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~ 202 (231)
. . ...+.+.+.+. ....++||+.++|+.|+++ ++++|+||+... +...++.+++..+||.++++++++..||+|
T Consensus 79 ~~~~~~~~~~~~~~~--~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~ 155 (224)
T TIGR02254 79 ADEALLNQKYLRFLE--EGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDK 155 (224)
T ss_pred CcHHHHHHHHHHHHh--ccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCH
Confidence 1 1 22233333332 2358999999999999999 999999998876 688899999999999999999999999999
Q ss_pred HHHHHHHHhc-CCCCCccceeeCCCc
Q 026879 203 RIFKAALGTS-EHGFQLSCSVMPSSL 227 (231)
Q Consensus 203 ~~~~~~~~~~-~~~~~~~~~v~~d~~ 227 (231)
++|+++++++ |++|+ +|++|+|+.
T Consensus 156 ~~~~~~~~~~~~~~~~-~~v~igD~~ 180 (224)
T TIGR02254 156 EIFNYALERMPKFSKE-EVLMIGDSL 180 (224)
T ss_pred HHHHHHHHHhcCCCch-heEEECCCc
Confidence 9999999999 99998 999999986
No 22
>PLN02940 riboflavin kinase
Probab=99.93 E-value=2.2e-24 Score=180.27 Aligned_cols=165 Identities=25% Similarity=0.282 Sum_probs=125.8
Q ss_pred cccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhc-CCCCh
Q 026879 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT-GCTND 127 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 127 (231)
.+++|+||+||||+|+...+..++..++.++|.+.+.++....+ + ......+...+.... ....+
T Consensus 10 ~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~----G----------~~~~~~~~~~~~~~~~~~~~~ 75 (382)
T PLN02940 10 LVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIV----G----------KTPLEAAATVVEDYGLPCSTD 75 (382)
T ss_pred cCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhc----C----------CCHHHHHHHHHHHhCCCCCHH
Confidence 48999999999999999999999999999999887665543321 1 111222233322211 11223
Q ss_pred HHHHHHHHHHHc-CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHH-hcCccccccEEEecCcCCCCCCCHHH
Q 026879 128 DYFEEVYEYYAK-GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLK-DLNVIDLFDAVVISSEVGCEKPDPRI 204 (231)
Q Consensus 128 ~~~~~~~~~~~~-~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~-~~gl~~~fd~ii~s~~~~~~KP~~~~ 204 (231)
+....+.+.+.. .....++||+.++|+.|+++|++++|+||+... +...++ ..|+.++||.++++++++..||+|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~ 155 (382)
T PLN02940 76 EFNSEITPLLSEQWCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDI 155 (382)
T ss_pred HHHHHHHHHHHHHHccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHH
Confidence 333333333322 234689999999999999999999999998876 577776 78999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccceeeCCCce
Q 026879 205 FKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 205 ~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
|.++++++|++|+ +|++|+|+..
T Consensus 156 ~~~a~~~lgv~p~-~~l~VGDs~~ 178 (382)
T PLN02940 156 FLEAAKRLNVEPS-NCLVIEDSLP 178 (382)
T ss_pred HHHHHHHcCCChh-HEEEEeCCHH
Confidence 9999999999998 9999999864
No 23
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.92 E-value=3.2e-24 Score=166.40 Aligned_cols=161 Identities=19% Similarity=0.157 Sum_probs=120.1
Q ss_pred EEEecCCccccccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCC----Ch
Q 026879 53 VLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT----ND 127 (231)
Q Consensus 53 iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 127 (231)
||||+||||+|+.+.+..++.+++.++|.+ .+.+.+...+.. . ....+........... .+
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~----------~~~~~~~~~~~~~~~~~~~~~~ 66 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIGN----G----------VPVLMERVLAWAGQEPDAQRVA 66 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcc----c----------HHHHHHHHhhccccccChHHHH
Confidence 689999999999988889999999999886 455544332111 1 1112222211111111 12
Q ss_pred HHHHHHHHHHHcC--CCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHH
Q 026879 128 DYFEEVYEYYAKG--EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRI 204 (231)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~ 204 (231)
+..+.+.+.|... ....++||+.++|+.|+++|++++|+||+... +...++++|+.++|+.++++++++..||+|++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~ 146 (213)
T TIGR01449 67 ELRKLFDRHYEEVAGELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDP 146 (213)
T ss_pred HHHHHHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHH
Confidence 2233333344332 23689999999999999999999999998876 68899999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccceeeCCCce
Q 026879 205 FKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 205 ~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
|.++++++|++|+ +|++|+|+..
T Consensus 147 ~~~~~~~~~~~~~-~~~~igDs~~ 169 (213)
T TIGR01449 147 LLLAAERLGVAPQ-QMVYVGDSRV 169 (213)
T ss_pred HHHHHHHcCCChh-HeEEeCCCHH
Confidence 9999999999998 8999999853
No 24
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.92 E-value=1.7e-24 Score=168.70 Aligned_cols=171 Identities=26% Similarity=0.286 Sum_probs=124.6
Q ss_pred cccccEEEEecCCccccccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCC
Q 026879 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT 125 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (231)
+|++++|+||+||||+|+.+.+..++..++.++|.+ .+.+.+...........+............. ..
T Consensus 1 ~~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~----------~~ 70 (220)
T COG0546 1 MMMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAA----------EL 70 (220)
T ss_pred CCCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHH----------HH
Confidence 357899999999999999999999999999999988 5666655432111111110000000000000 01
Q ss_pred ChHHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHH
Q 026879 126 NDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRI 204 (231)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~ 204 (231)
.+.+.+.+.+.|.......++||+.++|..|+++|++++|+||.+.. +...++.+|+.++|+.+++.++....||+|..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~ 150 (220)
T COG0546 71 VERLREEFLTAYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEP 150 (220)
T ss_pred HHHHHHHHHHHHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHH
Confidence 11122222233322112479999999999999999999999998876 79999999999999999998888999999999
Q ss_pred HHHHHHhcCCCCCccceeeCCCce
Q 026879 205 FKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 205 ~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
+..+++++|++|+ ++++|+|+..
T Consensus 151 l~~~~~~~~~~~~-~~l~VGDs~~ 173 (220)
T COG0546 151 LLLLLEKLGLDPE-EALMVGDSLN 173 (220)
T ss_pred HHHHHHHhCCChh-heEEECCCHH
Confidence 9999999999964 9999999863
No 25
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.91 E-value=1.5e-23 Score=163.66 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=80.6
Q ss_pred CcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccc
Q 026879 142 AWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSC 220 (231)
Q Consensus 142 ~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 220 (231)
...++||+.++|+.|+++|++++|+||+... +...++.+|+.++||.++++++++..||+|++|+++++++|++|+ +|
T Consensus 91 ~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~-~~ 169 (224)
T PRK14988 91 RAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAE-RT 169 (224)
T ss_pred cCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChH-HE
Confidence 3689999999999999999999999998866 688899999999999999999999999999999999999999998 99
Q ss_pred eeeCCCce
Q 026879 221 SVMPSSLF 228 (231)
Q Consensus 221 ~v~~d~~~ 228 (231)
++|+|+..
T Consensus 170 l~igDs~~ 177 (224)
T PRK14988 170 LFIDDSEP 177 (224)
T ss_pred EEEcCCHH
Confidence 99999864
No 26
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.91 E-value=3.9e-23 Score=158.48 Aligned_cols=169 Identities=17% Similarity=0.140 Sum_probs=118.9
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHHhC-CCCCHHHHHHHHHHhhhC-CChhhhccCCCcHHHHHHHHHHh------c
Q 026879 51 DAVLLDAGGTLLQLAEPVEETYASIARKYG-LNVDSADIKKGFRKAFAA-PWPEKLRYEGDGRPFWRLVVSEA------T 122 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~ 122 (231)
++|+||+||||+|+.+.+..++.++++++| ...+.+.+.......... .+. .....+.. .+... .
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~ 73 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQ------LTHRLVVD-GLNSASSERVRD 73 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchH------HHHHHHHH-hhhcccchhccC
Confidence 469999999999999999999999999997 556666554432211000 000 00001111 11100 0
Q ss_pred CCCChHHHHHHHHHHHcC-----------CCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEE
Q 026879 123 GCTNDDYFEEVYEYYAKG-----------EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVV 190 (231)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~-----------~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii 190 (231)
....+...+.+.+.|... ....+.+++.++|+.|++.|++++|+||+... +...++.+|+..+|+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~ 153 (197)
T TIGR01548 74 APTLEAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQI 153 (197)
T ss_pred CccHHHHHHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEE
Confidence 112233333333334321 11245566799999999999999999999876 799999999999999999
Q ss_pred ecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 191 ISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 191 ~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
+++++.. ||+|++|.++++++|++|+ +|++|+|+..
T Consensus 154 ~~~~~~~-KP~p~~~~~~~~~~~~~~~-~~i~vGD~~~ 189 (197)
T TIGR01548 154 WMEDCPP-KPNPEPLILAAKALGVEAC-HAAMVGDTVD 189 (197)
T ss_pred eecCCCC-CcCHHHHHHHHHHhCcCcc-cEEEEeCCHH
Confidence 9999887 9999999999999999988 9999999864
No 27
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.91 E-value=2.1e-23 Score=160.99 Aligned_cols=155 Identities=23% Similarity=0.312 Sum_probs=115.6
Q ss_pred EEEecCCccccccccHHHHHHHHHHHh-CCC-CCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCChHHH
Q 026879 53 VLLDAGGTLLQLAEPVEETYASIARKY-GLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYF 130 (231)
Q Consensus 53 iiFD~DGTL~d~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (231)
|+||+||||+|+.+.+.+++.+++.++ |.+ .+.+.+... .+..++... . . .+.+.. ..
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~----------~----~-~~~~~~-~~ 60 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRH----LGRYFPDIM----------R----I-MGLPLE-ME 60 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH----hCccHHHHH----------H----H-cCCCHH-HH
Confidence 689999999999999999999999884 754 344443332 222221111 1 0 011100 00
Q ss_pred HHH-HHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHH
Q 026879 131 EEV-YEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAA 208 (231)
Q Consensus 131 ~~~-~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~ 208 (231)
... ...+.......++||+.++|+.|+++|++++|+||+... +...++.+|+.++|+.++++++.+..||+|++|.++
T Consensus 61 ~~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~ 140 (205)
T TIGR01454 61 EPFVRESYRLAGEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREA 140 (205)
T ss_pred HHHHHHHHHhhcccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHH
Confidence 111 111211234789999999999999999999999998866 688899999999999999999999999999999999
Q ss_pred HHhcCCCCCccceeeCCCce
Q 026879 209 LGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 209 ~~~~~~~~~~~~~v~~d~~~ 228 (231)
++++|++|+ +|++|+|+..
T Consensus 141 ~~~~~~~~~-~~l~igD~~~ 159 (205)
T TIGR01454 141 LRLLDVPPE-DAVMVGDAVT 159 (205)
T ss_pred HHHcCCChh-heEEEcCCHH
Confidence 999999988 8999999853
No 28
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.91 E-value=6e-24 Score=159.31 Aligned_cols=159 Identities=19% Similarity=0.330 Sum_probs=118.6
Q ss_pred EEEecCCccccccccHHHHHHHH-HHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCChHHHH
Q 026879 53 VLLDAGGTLLQLAEPVEETYASI-ARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFE 131 (231)
Q Consensus 53 iiFD~DGTL~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (231)
|+||+||||+++...+.+++.++ ++.++.+.+.+.+.+.+ .......+..++..... . .....
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~-~~~~~ 64 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELF--------------GKSYEEALERLLERFGI-D-PEEIQ 64 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHT--------------TSHHHHHHHHHHHHHHH-H-HHHHH
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHh--------------CCCHHHHHHHhhhccch-h-HHHHH
Confidence 79999999999988777888874 66777653333333221 11112223333322211 1 22233
Q ss_pred HHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHH
Q 026879 132 EVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALG 210 (231)
Q Consensus 132 ~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~ 210 (231)
+.+..+......+++||+.++|+.|+++|++++++||++.. +...++.+|+.++|+.++++++.+..||+|++|+++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 144 (176)
T PF13419_consen 65 ELFREYNLESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALE 144 (176)
T ss_dssp HHHHHHHHHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHH
T ss_pred HHhhhhhhhhccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHH
Confidence 33333322244799999999999999999999999999876 68999999999999999999999999999999999999
Q ss_pred hcCCCCCccceeeCCCce
Q 026879 211 TSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 211 ~~~~~~~~~~~v~~d~~~ 228 (231)
++|++|+ +|++|+|+..
T Consensus 145 ~~~~~p~-~~~~vgD~~~ 161 (176)
T PF13419_consen 145 KLGIPPE-EILFVGDSPS 161 (176)
T ss_dssp HHTSSGG-GEEEEESSHH
T ss_pred HcCCCcc-eEEEEeCCHH
Confidence 9999997 9999999864
No 29
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.91 E-value=3e-23 Score=166.37 Aligned_cols=165 Identities=17% Similarity=0.211 Sum_probs=122.8
Q ss_pred cccEEEEecCCccccccccHHHHHHHHHHHhCCCCC-HHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhc---CC
Q 026879 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVD-SADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT---GC 124 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 124 (231)
.+|+|+||+||||+|+.+.+..++.+++.++|.+.. .+.+....... ....+...+.... +.
T Consensus 12 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~--------------~~~~~~~~l~~~~~~~~~ 77 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNG--------------APVLVRRALAGSIDHDGV 77 (272)
T ss_pred cCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChh--------------HHHHHHHHhcccccccCC
Confidence 578999999999999999999999999999998753 33332221111 0111111111000 00
Q ss_pred ---CChHHHHHHHHHHHcC-CCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCC
Q 026879 125 ---TNDDYFEEVYEYYAKG-EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEK 199 (231)
Q Consensus 125 ---~~~~~~~~~~~~~~~~-~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~K 199 (231)
..++..+.+.+.|... ....++||+.++|+.|+++|++++|+||++.. +...++.+++..+|+.++++++.+..|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~K 157 (272)
T PRK13223 78 DDELAEQALALFMEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKK 157 (272)
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCC
Confidence 1122233334444332 23578999999999999999999999998876 688999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 200 PDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 200 P~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
|+|++|+.+++++|++|+ +|++|+|+..
T Consensus 158 p~p~~~~~~~~~~g~~~~-~~l~IGD~~~ 185 (272)
T PRK13223 158 PDPAALLFVMKMAGVPPS-QSLFVGDSRS 185 (272)
T ss_pred CCcHHHHHHHHHhCCChh-HEEEECCCHH
Confidence 999999999999999988 9999999853
No 30
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.91 E-value=1.2e-23 Score=162.98 Aligned_cols=173 Identities=24% Similarity=0.288 Sum_probs=112.2
Q ss_pred ccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccC-CCcHHHHHHHHHHhcCC--CC
Q 026879 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYE-GDGRPFWRLVVSEATGC--TN 126 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~ 126 (231)
+|+|+||+||||+|+.. ....|...+...|.+ .+.....+.......+......+ ....+++..+. +..+. ..
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~ 77 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK--DFIVTVNITGPDFNPWARTFERGELTAEAFDGLFR-HEYGLRLGH 77 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc--cHHHHHHhcCCCCChHHHHHHcCCCCHHHHHHHHH-HHhccccCC
Confidence 57999999999999865 555666555445543 22222222222222222211111 12223333322 22221 11
Q ss_pred hHHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh---HHHHHHhcCccccccEEEecCcCCCCCCCHH
Q 026879 127 DDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR---LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (231)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~---~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~ 203 (231)
+......+..+.. ....++||+.++|+.|+++|++++|+||+... ....+...++.++||.+++|++++..||+|+
T Consensus 78 ~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~ 156 (211)
T TIGR02247 78 DVRIAPVFPLLYG-ENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPR 156 (211)
T ss_pred CcCchhhHHHHhc-cccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHH
Confidence 2222333332222 23689999999999999999999999997643 2333455788899999999999999999999
Q ss_pred HHHHHHHhcCCCCCccceeeCCCce
Q 026879 204 IFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
+|+.+++++|++|+ +|++|+|...
T Consensus 157 ~~~~~~~~~g~~~~-~~l~i~D~~~ 180 (211)
T TIGR02247 157 IYQLMLERLGVAPE-ECVFLDDLGS 180 (211)
T ss_pred HHHHHHHHcCCCHH-HeEEEcCCHH
Confidence 99999999999998 8999988754
No 31
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.90 E-value=4.1e-23 Score=161.86 Aligned_cols=177 Identities=24% Similarity=0.221 Sum_probs=117.5
Q ss_pred cccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcH-----HHHHHHHHHh
Q 026879 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGR-----PFWRLVVSEA 121 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 121 (231)
+|++++|+||+||||++............+...+............. ... .+........... ..........
T Consensus 1 ~~~~k~i~FD~d~TL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (229)
T COG1011 1 MMMIKAILFDLDGTLLDFDSAEFRAVLAEFAEIGVPETLEELALLKL-IEK-LEARFLRGEYTGEYGLTLERLLELLERL 78 (229)
T ss_pred CCceeEEEEecCCcccccchHHhHHHHHHHHHhchHHHhhhhHHHHH-HHH-HHHHHHcccchHHHhhhHHHHHHHHHhh
Confidence 46789999999999999876655444444444433321111111100 000 1111111110000 1111111122
Q ss_pred cCCCChHHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCC
Q 026879 122 TGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKP 200 (231)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP 200 (231)
.........+.....+.. ..+++|++.++|+.|+.+ ++++|+||+... +...+..+|+.++||.+++|+++|..||
T Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP 155 (229)
T COG1011 79 LGDEDAELVEELLAALAK--LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKP 155 (229)
T ss_pred cccccHHHHHHHHHHHHh--hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCC
Confidence 222333444444444332 369999999999999999 999999998765 6999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCCCccceeeCCCcee
Q 026879 201 DPRIFKAALGTSEHGFQLSCSVMPSSLFM 229 (231)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 229 (231)
+|++|+.+++++|++|+ +|++|+|+...
T Consensus 156 ~~~~f~~~~~~~g~~p~-~~l~VgD~~~~ 183 (229)
T COG1011 156 DPEIFEYALEKLGVPPE-EALFVGDSLEN 183 (229)
T ss_pred CcHHHHHHHHHcCCCcc-eEEEECCChhh
Confidence 99999999999999988 99999998754
No 32
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.90 E-value=8e-23 Score=159.94 Aligned_cols=167 Identities=22% Similarity=0.189 Sum_probs=124.4
Q ss_pred cccccEEEEecCCccccccccHHHHHHHHHHHhCCCC-CHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcC--
Q 026879 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNV-DSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATG-- 123 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 123 (231)
++++++|+||+||||+|+...+..++.+++.++|.+. +.+.+...+ +.. ....+...+.....
T Consensus 3 ~~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~----------~~~~~~~~~~~~~~~~ 68 (226)
T PRK13222 3 FMDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWV----GNG----------ADVLVERALTWAGREP 68 (226)
T ss_pred CCcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHh----Ccc----------HHHHHHHHHhhccCCc
Confidence 3568999999999999998888889999999998764 444433221 111 11222222211000
Q ss_pred --CCChHHHHHHHHHHHcC--CCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCC
Q 026879 124 --CTNDDYFEEVYEYYAKG--EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCE 198 (231)
Q Consensus 124 --~~~~~~~~~~~~~~~~~--~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~ 198 (231)
...+.....+.+.|... ....++||+.++|+.|++.|++++++||+... +..+++.+|+..+|+.++++++.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~ 148 (226)
T PRK13222 69 DEELLEKLRELFDRHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNK 148 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCC
Confidence 11222233344444432 23689999999999999999999999998876 68899999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 199 KPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 199 KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
||+|++|+.++++++++|+ +|++|+|+..
T Consensus 149 kp~~~~~~~~~~~~~~~~~-~~i~igD~~~ 177 (226)
T PRK13222 149 KPDPAPLLLACEKLGLDPE-EMLFVGDSRN 177 (226)
T ss_pred CcChHHHHHHHHHcCCChh-heEEECCCHH
Confidence 9999999999999999988 9999999853
No 33
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=9.1e-23 Score=164.58 Aligned_cols=167 Identities=20% Similarity=0.279 Sum_probs=110.9
Q ss_pred cccEEEEecCCcccccc-ccHHHHHHHHHHHhCCC-C--CHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHh---
Q 026879 49 AYDAVLLDAGGTLLQLA-EPVEETYASIARKYGLN-V--DSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEA--- 121 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~-~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 121 (231)
.+++||||+||||+|+. ..+..+|.+++.++|++ . +.+.+.. +.. .+.... .....+....
T Consensus 39 ~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~-~~~-~g~~~~----------~~~~~~~~~~~~~ 106 (286)
T PLN02779 39 LPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDE-LLN-IGGGKE----------RMTWYFNENGWPT 106 (286)
T ss_pred CCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHH-HHc-cCCChH----------HHHHHHHHcCCCc
Confidence 47999999999999999 99899999999999983 2 3332211 111 111000 0000000000
Q ss_pred -----c---CCCChHHHH----HHHHHHH---cCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcccc
Q 026879 122 -----T---GCTNDDYFE----EVYEYYA---KGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDL 185 (231)
Q Consensus 122 -----~---~~~~~~~~~----~~~~~~~---~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~ 185 (231)
. ....+...+ ...+.|. ....+.++||+.++|+.|+++|++++|+||+... +...++.++...+
T Consensus 107 ~~~~~~~~~~e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~ 186 (286)
T PLN02779 107 STIEKAPKDEEERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPER 186 (286)
T ss_pred cccccCCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccc
Confidence 0 000011111 1112222 1223589999999999999999999999998876 6777777644444
Q ss_pred cc--EEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 186 FD--AVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 186 fd--~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
|+ .++++++++..||+|++|.++++++|++|+ +|++|+|+..
T Consensus 187 ~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~-~~l~IGDs~~ 230 (286)
T PLN02779 187 AQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPS-RCVVVEDSVI 230 (286)
T ss_pred cCceEEEeccccCCCCCCHHHHHHHHHHhCcChH-HEEEEeCCHH
Confidence 44 234788889999999999999999999998 9999999864
No 34
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.90 E-value=1.2e-22 Score=160.03 Aligned_cols=172 Identities=14% Similarity=0.124 Sum_probs=112.2
Q ss_pred ccccEEEEecCCccccccccHHHHHHHHHHHhCCC------CCHHHHHHHHHHhhhCCChhhhcc-CCCcHHHHHHHHHH
Q 026879 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN------VDSADIKKGFRKAFAAPWPEKLRY-EGDGRPFWRLVVSE 120 (231)
Q Consensus 48 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 120 (231)
.++|+|+||+||||+|+.+....++.+++..++.. .+.+.+.. +.............. .......+...+ .
T Consensus 8 ~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 85 (238)
T PRK10748 8 GRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQR-LRQALREAEPEIYHDVTRWRWRAIEQAM-L 85 (238)
T ss_pred CCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHHH-HHHHHHHhCchhhCcHHHHHHHHHHHHH-H
Confidence 35799999999999999988888888877655211 11222222 222111111111000 000011112222 2
Q ss_pred hcCCCChHH---HHHHHHHHHcC-CCcccCCCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcCC
Q 026879 121 ATGCTNDDY---FEEVYEYYAKG-EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVG 196 (231)
Q Consensus 121 ~~~~~~~~~---~~~~~~~~~~~-~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~ 196 (231)
..+...+.. .+.....+... ..+.++||+.++|+.|++. ++++|+||++.. ++..|+.++||.++++++++
T Consensus 86 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~----~~~~gl~~~fd~i~~~~~~~ 160 (238)
T PRK10748 86 DAGLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ----PELFGLGDYFEFVLRAGPHG 160 (238)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch----HHHCCcHHhhceeEecccCC
Confidence 222222221 12222222211 3368999999999999976 999999998765 47799999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 197 CEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 197 ~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
..||+|++|+.+++++|++|+ +|++|+|+.
T Consensus 161 ~~KP~p~~~~~a~~~~~~~~~-~~~~VGD~~ 190 (238)
T PRK10748 161 RSKPFSDMYHLAAEKLNVPIG-EILHVGDDL 190 (238)
T ss_pred cCCCcHHHHHHHHHHcCCChh-HEEEEcCCc
Confidence 999999999999999999998 899999984
No 35
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.89 E-value=2.7e-23 Score=156.45 Aligned_cols=163 Identities=18% Similarity=0.215 Sum_probs=111.7
Q ss_pred EEEEecCCccccccccHHHHHHHHHHHhCCC---CCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCC-Ch
Q 026879 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLN---VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT-ND 127 (231)
Q Consensus 52 ~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 127 (231)
+|+||+||||+|+...+..++..++...+.. .+...+...+.......+.... ......+..+. ...+.. ..
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~g~~~~~ 76 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFP---EDTVRALRYIA-DRLGLDAEP 76 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHH---HHHHHHHHHHH-HHcCCCCCH
Confidence 5899999999999988888888877764421 1122222222222111111000 00011223332 223332 22
Q ss_pred HHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHH
Q 026879 128 DYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFK 206 (231)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~ 206 (231)
+..+.+.+.|. .+.++||+.++|+ +++|+||++.. +...++++|+.++||.++++++++..||+|++|+
T Consensus 77 ~~~~~~~~~~~---~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~ 146 (175)
T TIGR01493 77 KYGERLRDAYK---NLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYE 146 (175)
T ss_pred HHHHHHHHHHh---cCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHH
Confidence 33344444443 3579999999999 38899999877 6889999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccceeeCCCcee
Q 026879 207 AALGTSEHGFQLSCSVMPSSLFM 229 (231)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~d~~~~ 229 (231)
.+++++|++|+ +|++|+|+.+-
T Consensus 147 ~~~~~~~~~p~-~~l~vgD~~~D 168 (175)
T TIGR01493 147 LVFDTVGLPPD-RVLMVAAHQWD 168 (175)
T ss_pred HHHHHHCCCHH-HeEeEecChhh
Confidence 99999999998 99999998653
No 36
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.89 E-value=2.5e-22 Score=185.77 Aligned_cols=167 Identities=28% Similarity=0.296 Sum_probs=126.3
Q ss_pred cccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHh--cCC
Q 026879 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEA--TGC 124 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 124 (231)
-+++++|+||+||||+|+...+.++|.+++.++|.+.+.+++...+. .....++....... .+.
T Consensus 72 ~~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G--------------~~~~~~~~~~~~~~~l~~~ 137 (1057)
T PLN02919 72 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMG--------------TGEANFLGGVASVKGVKGF 137 (1057)
T ss_pred CCCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhC--------------CCHHHHHHHHHHhcCCCCC
Confidence 35789999999999999999999999999999999877665544321 11122222221111 011
Q ss_pred CChHHHHHHHHH----HHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc-ccccEEEecCcCCCC
Q 026879 125 TNDDYFEEVYEY----YAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI-DLFDAVVISSEVGCE 198 (231)
Q Consensus 125 ~~~~~~~~~~~~----~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~-~~fd~ii~s~~~~~~ 198 (231)
..++..+.+++. |.......++||+.++|+.|+++|++++|+||+... +...++++|+. .+||.++++++++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~ 217 (1057)
T PLN02919 138 DPDAAKKRFFEIYLEKYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENL 217 (1057)
T ss_pred CHHHHHHHHHHHHHHHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccC
Confidence 222223333333 322222357999999999999999999999998876 68889999996 899999999999999
Q ss_pred CCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 199 KPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 199 KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
||+|++|+++++++|+.|+ +|++|+|+..
T Consensus 218 KP~Pe~~~~a~~~lgv~p~-e~v~IgDs~~ 246 (1057)
T PLN02919 218 KPAPDIFLAAAKILGVPTS-ECVVIEDALA 246 (1057)
T ss_pred CCCHHHHHHHHHHcCcCcc-cEEEEcCCHH
Confidence 9999999999999999999 8999999864
No 37
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.89 E-value=8.1e-22 Score=151.39 Aligned_cols=166 Identities=16% Similarity=0.200 Sum_probs=110.1
Q ss_pred EEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCC--hHH
Q 026879 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTN--DDY 129 (231)
Q Consensus 52 ~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 129 (231)
+|+||+||||++...... +.......+. +...+...+.. ...+.....+.....+++..+... .+... +..
T Consensus 2 ~viFDldgvL~d~~~~~~--~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~ 74 (199)
T PRK09456 2 LYIFDLGNVIVDIDFNRV--LGVWSDLSRV--PLATLKKRFTM--GEAFHQHERGEISDEAFAEALCHE-MALSLSYEQF 74 (199)
T ss_pred EEEEeCCCccccCcHHHH--HHHHHHhcCC--CHHHHHHHHhc--CcHHHHHhcCCCCHHHHHHHHHHH-hCCCCCHHHH
Confidence 699999999999753221 2211111222 23333333321 122333333333445555544443 33322 222
Q ss_pred HHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHh-cCccccccEEEecCcCCCCCCCHHHHHH
Q 026879 130 FEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKD-LNVIDLFDAVVISSEVGCEKPDPRIFKA 207 (231)
Q Consensus 130 ~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~-~gl~~~fd~ii~s~~~~~~KP~~~~~~~ 207 (231)
.....+.+ ..++||+.++|+.|+++|++++|+||++.. +...+.. .++..+||.+++|++++..||+|++|+.
T Consensus 75 ~~~~~~~~-----~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~ 149 (199)
T PRK09456 75 AHGWQAVF-----VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQH 149 (199)
T ss_pred HHHHHHHH-----hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHH
Confidence 22222222 368999999999999999999999998876 3444444 5788999999999999999999999999
Q ss_pred HHHhcCCCCCccceeeCCCceee
Q 026879 208 ALGTSEHGFQLSCSVMPSSLFMI 230 (231)
Q Consensus 208 ~~~~~~~~~~~~~~v~~d~~~~V 230 (231)
+++++|++|+ +|++|+|+...|
T Consensus 150 ~~~~~~~~p~-~~l~vgD~~~di 171 (199)
T PRK09456 150 VLQAEGFSAA-DAVFFDDNADNI 171 (199)
T ss_pred HHHHcCCChh-HeEEeCCCHHHH
Confidence 9999999999 999999986543
No 38
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.88 E-value=1.3e-21 Score=156.43 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=115.0
Q ss_pred cccEEEEecCCccccccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCC--
Q 026879 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT-- 125 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 125 (231)
.+++|+||+||||+|+.+.+..++.+++.++|.+ .+.+.+.... +... ...+. . .+..
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~----g~~~----------~~i~~----~-~~~~~~ 121 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLR----QWSS----------RTIVR----R-AGLSPW 121 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHh----CccH----------HHHHH----H-cCCCHH
Confidence 5899999999999999999999999999999986 3444333221 1111 11111 1 1111
Q ss_pred -ChHHHHHHHHHHHc-CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCH
Q 026879 126 -NDDYFEEVYEYYAK-GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202 (231)
Q Consensus 126 -~~~~~~~~~~~~~~-~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~ 202 (231)
.++......+.+.. .....++||+.++|+.|+++|++++|+||+... +...++.+|+.++|+.++++++. +|++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~---~~k~ 198 (273)
T PRK13225 122 QQARLLQRVQRQLGDCLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPI---LSKR 198 (273)
T ss_pred HHHHHHHHHHHHHHhhcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCC---CCCH
Confidence 11222222222222 234689999999999999999999999998876 68899999999999998887664 3456
Q ss_pred HHHHHHHHhcCCCCCccceeeCCCce
Q 026879 203 RIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
++|++++++++++|+ +|++|+|+..
T Consensus 199 ~~~~~~l~~~~~~p~-~~l~IGDs~~ 223 (273)
T PRK13225 199 RALSQLVAREGWQPA-AVMYVGDETR 223 (273)
T ss_pred HHHHHHHHHhCcChh-HEEEECCCHH
Confidence 899999999999998 8999999863
No 39
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.88 E-value=8.3e-22 Score=149.51 Aligned_cols=155 Identities=17% Similarity=0.201 Sum_probs=107.8
Q ss_pred cEEEEecCCccccccccHHHHHHHHHH-----HhCCCCCHH-HHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCC
Q 026879 51 DAVLLDAGGTLLQLAEPVEETYASIAR-----KYGLNVDSA-DIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC 124 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (231)
++|+||+||||+|+......++.+.+. .+|.+.... .+...+....+. .. ...... ...
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~-------------~~-~~~~~~-~~~ 65 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGT-------------TL-AGLMIL-HEI 65 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHch-------------HH-HHHHHh-hCC
Confidence 479999999999998888888877654 456543211 111111101110 00 011111 111
Q ss_pred CChHHHHHHHHHHHc---CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCC---
Q 026879 125 TNDDYFEEVYEYYAK---GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGC--- 197 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~---~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~--- 197 (231)
..+ .+.+.|.. .....++||+.++|+.|+ ++++|+||++.. +...++.+|+.++||.++++++.+.
T Consensus 66 ~~~----~~~~~~~~~~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~ 138 (184)
T TIGR01993 66 DAD----EYLRYVHGRLPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYL 138 (184)
T ss_pred CHH----HHHHHHhccCCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccC
Confidence 111 22222221 123579999999999998 589999998876 7899999999999999999999887
Q ss_pred -CCCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 198 -EKPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 198 -~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
.||+|++|+.+++++|++|+ +|++|+|+..
T Consensus 139 ~~KP~p~~~~~~~~~~~~~~~-~~l~vgD~~~ 169 (184)
T TIGR01993 139 LPKPSPQAYEKALREAGVDPE-RAIFFDDSAR 169 (184)
T ss_pred CCCCCHHHHHHHHHHhCCCcc-ceEEEeCCHH
Confidence 59999999999999999998 8999999864
No 40
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.87 E-value=1.8e-21 Score=167.03 Aligned_cols=162 Identities=12% Similarity=0.126 Sum_probs=114.5
Q ss_pred cccEEEEecCCccccccccHHHHHHHHHHHhC------CCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhc
Q 026879 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYG------LNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT 122 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (231)
++++|+||+||||+|+.+.+..+|.+++.+++ ...+.+.+... .+ ......+..+.....
T Consensus 240 m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~G----------~~~~~~~~~l~~~~~ 305 (459)
T PRK06698 240 MLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREI----MG----------VPLPKVWEALLPDHS 305 (459)
T ss_pred hhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHH----cC----------CChHHHHHHHhhhcc
Confidence 47899999999999999999999999998874 11233333221 11 122233333322111
Q ss_pred CCCChHHHHHHHHHHHc---CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCC
Q 026879 123 GCTNDDYFEEVYEYYAK---GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCE 198 (231)
Q Consensus 123 ~~~~~~~~~~~~~~~~~---~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~ 198 (231)
....++....+.+.|.. ....+++||+.++|+.|+++|++++|+||+..+ +...++.+|+.++|+.+++++++. .
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~-~ 384 (459)
T PRK06698 306 LEIREQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQIN-S 384 (459)
T ss_pred hhHHHHHHHHHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCC-C
Confidence 11112222222222221 234689999999999999999999999999877 699999999999999999999874 4
Q ss_pred CCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 199 KPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 199 KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
||+|++|.+++++++ |+ +|++|+|+..
T Consensus 385 ~~kP~~~~~al~~l~--~~-~~v~VGDs~~ 411 (459)
T PRK06698 385 LNKSDLVKSILNKYD--IK-EAAVVGDRLS 411 (459)
T ss_pred CCCcHHHHHHHHhcC--cc-eEEEEeCCHH
Confidence 677889999999876 44 8999999853
No 41
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.87 E-value=8.9e-21 Score=143.49 Aligned_cols=86 Identities=29% Similarity=0.384 Sum_probs=77.7
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCcccee
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSV 222 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 222 (231)
.+++||+.++|+.|+++|++++|+||+.......+.++|+.++|+.++++++++..||+|++|+.+++++|++|+ +|++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~-~~~~ 162 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDHAVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPE-ECLF 162 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcc-eEEE
Confidence 589999999999999999999999998866544445599999999999999999999999999999999999988 9999
Q ss_pred eCCCcee
Q 026879 223 MPSSLFM 229 (231)
Q Consensus 223 ~~d~~~~ 229 (231)
|+|+..-
T Consensus 163 vgD~~~d 169 (183)
T TIGR01509 163 VDDSPAG 169 (183)
T ss_pred EcCCHHH
Confidence 9998643
No 42
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.87 E-value=4.3e-21 Score=141.47 Aligned_cols=143 Identities=27% Similarity=0.380 Sum_probs=107.0
Q ss_pred EEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCChHHHH
Q 026879 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFE 131 (231)
Q Consensus 52 ~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (231)
+|+||+||||+|+.+....+|.+++.+++.. .+.+... .+. ....+ ..... ..+
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~--~~~~~~~----~g~----------~~~~~-~~~~~---------~~~ 54 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGED--FQALKAL----RGL----------AEELL-YRIAT---------SFE 54 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhccc--HHHHHHH----Hcc----------ChHHH-HHHHH---------HHH
Confidence 4899999999999888899999999998853 3333221 111 00111 11100 011
Q ss_pred HHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHH
Q 026879 132 EVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALG 210 (231)
Q Consensus 132 ~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~ 210 (231)
.+.. |. .....+||+.++|+.|+++|++++|+||+... +...++.+ +..+|+.++++++.+ .||+|++|.++++
T Consensus 55 ~~~~-~~--~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~ 129 (154)
T TIGR01549 55 ELLG-YD--AEEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALE 129 (154)
T ss_pred HHhC-cc--hhheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHH
Confidence 1111 22 22467899999999999999999999998876 67778887 889999999999988 9999999999999
Q ss_pred hcCCCCCccceeeCCCc
Q 026879 211 TSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 211 ~~~~~~~~~~~v~~d~~ 227 (231)
++|++| +|++|+|+.
T Consensus 130 ~~~~~~--~~l~iGDs~ 144 (154)
T TIGR01549 130 SLGLPP--EVLHVGDNL 144 (154)
T ss_pred HcCCCC--CEEEEeCCH
Confidence 999986 799999985
No 43
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=138.74 Aligned_cols=169 Identities=22% Similarity=0.244 Sum_probs=126.4
Q ss_pred cccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcC-CC
Q 026879 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATG-CT 125 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 125 (231)
...+.+++||+||||+|++..+.+++..++.++|...+.+..... .+....+....++..... ..
T Consensus 7 ~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~--------------mG~~~~eaa~~~~~~~~dp~s 72 (222)
T KOG2914|consen 7 SLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKS--------------MGKRTSEAARLFVKKLPDPVS 72 (222)
T ss_pred ccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHH--------------cCCCHHHHHHHHHhhcCCCCC
Confidence 346789999999999999999999999999999987666544331 222333333444422211 23
Q ss_pred ChHHHHHHHHHHHc-CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcC-ccccccEEEe--cCcCCCCCC
Q 026879 126 NDDYFEEVYEYYAK-GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLN-VIDLFDAVVI--SSEVGCEKP 200 (231)
Q Consensus 126 ~~~~~~~~~~~~~~-~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~g-l~~~fd~ii~--s~~~~~~KP 200 (231)
.++...+..+.... .....+.||+..+++.|+.+|++++++|+.++. +..++.+++ +...|+.++. ..++...||
T Consensus 73 ~ee~~~e~~~~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP 152 (222)
T KOG2914|consen 73 REEFNKEEEEILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKP 152 (222)
T ss_pred HHHHHHHHHHHHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCC
Confidence 33443333333222 244689999999999999999999999998765 777888877 7788988877 667889999
Q ss_pred CHHHHHHHHHhcCCCCCccceeeCCCcee
Q 026879 201 DPRIFKAALGTSEHGFQLSCSVMPSSLFM 229 (231)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 229 (231)
+|++|..+++.+|..|.+.|+|++|+..-
T Consensus 153 ~Pdi~l~A~~~l~~~~~~k~lVfeds~~G 181 (222)
T KOG2914|consen 153 DPDIYLKAAKRLGVPPPSKCLVFEDSPVG 181 (222)
T ss_pred CchHHHHHHHhcCCCCccceEEECCCHHH
Confidence 99999999999999994499999998653
No 44
>PLN02811 hydrolase
Probab=99.83 E-value=1.2e-19 Score=141.45 Aligned_cols=155 Identities=23% Similarity=0.247 Sum_probs=110.4
Q ss_pred cCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHh-cCC--CChHHH---
Q 026879 57 AGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEA-TGC--TNDDYF--- 130 (231)
Q Consensus 57 ~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~--- 130 (231)
+||||+|+...+..+|.+++.++|++.+.+.... ..+ ......+..+.... ... ..+...
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~----~~G----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAK----MMG----------KKAIEAARIFVEESGLSDSLSPEDFLVER 66 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHH----ccC----------CCHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 6999999999999999999999998865443222 111 11122222222221 110 111211
Q ss_pred HHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHH-HHHhcCccccccEEEecC--cCCCCCCCHHHHH
Q 026879 131 EEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRK-LLKDLNVIDLFDAVVISS--EVGCEKPDPRIFK 206 (231)
Q Consensus 131 ~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~-~l~~~gl~~~fd~ii~s~--~~~~~KP~~~~~~ 206 (231)
+.....+. ....++||+.++|+.|+++|++++|+||+... +.. .++..++.++|+.+++++ +++..||+|++|.
T Consensus 67 ~~~~~~~~--~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~ 144 (220)
T PLN02811 67 EAMLQDLF--PTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFL 144 (220)
T ss_pred HHHHHHHH--hhCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHH
Confidence 12222221 23688999999999999999999999998764 443 344567889999999999 8899999999999
Q ss_pred HHHHhcC---CCCCccceeeCCCce
Q 026879 207 AALGTSE---HGFQLSCSVMPSSLF 228 (231)
Q Consensus 207 ~~~~~~~---~~~~~~~~v~~d~~~ 228 (231)
.++++++ ++|+ +|++|+|+..
T Consensus 145 ~a~~~~~~~~~~~~-~~v~IgDs~~ 168 (220)
T PLN02811 145 AAARRFEDGPVDPG-KVLVFEDAPS 168 (220)
T ss_pred HHHHHhCCCCCCcc-ceEEEeccHh
Confidence 9999997 8888 9999999874
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.79 E-value=3.9e-18 Score=132.82 Aligned_cols=158 Identities=20% Similarity=0.162 Sum_probs=105.2
Q ss_pred cccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCC
Q 026879 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTN 126 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (231)
++++++|+||+||||+++. ++.+++..+|.+.....+ +..... .......+....+....+ ..
T Consensus 11 ~~~~k~iiFD~DGTL~~~~-----~~~~l~~~~g~~~~~~~~---~~~~~~--------g~~~~~~~~~~~~~~~~~-~~ 73 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAE-----TIDEIAKIAGVEEEVSEI---TERAMR--------GELDFKASLRERVALLKG-LP 73 (219)
T ss_pred hccCCEEEEeCcccCCCch-----HHHHHHHHhCCHHHHHHH---HHHHHc--------CCCCHHHHHHHHHHHhCC-CC
Confidence 5568999999999999974 566777777765322222 111111 111122222322222212 12
Q ss_pred hHHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEe-------cC---cC
Q 026879 127 DDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVI-------SS---EV 195 (231)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~-------s~---~~ 195 (231)
.+.++.. .. ..+++||+.++|+.|+++|++++|+||+... +...++.+|+..+|+..+. +. ..
T Consensus 74 ~~~~~~~----~~--~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 147 (219)
T TIGR00338 74 VELLKEV----RE--NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPI 147 (219)
T ss_pred HHHHHHH----Hh--cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcc
Confidence 2222222 21 2579999999999999999999999998876 6888999999988854322 11 22
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 196 GCEKPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 196 ~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
...+|+|.+|++++++++++|+ +|++|+|+..
T Consensus 148 ~~~~~k~~~~~~~~~~~~~~~~-~~i~iGDs~~ 179 (219)
T TIGR00338 148 VDASYKGKTLLILLRKEGISPE-NTVAVGDGAN 179 (219)
T ss_pred cCCcccHHHHHHHHHHcCCCHH-HEEEEECCHH
Confidence 2356789999999999999988 8999999853
No 46
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.77 E-value=1.6e-17 Score=127.60 Aligned_cols=85 Identities=20% Similarity=0.165 Sum_probs=73.5
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCH----------HHHHHHHHh
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDP----------RIFKAALGT 211 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~----------~~~~~~~~~ 211 (231)
..++||+.++|+.|+++|++++|+||+... +...++.+|+..+|+..+.+++.+..||++ +++++++++
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~ 158 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRE 158 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHH
Confidence 589999999999999999999999999877 688899999998888887777666656553 688999999
Q ss_pred cCCCCCccceeeCCCce
Q 026879 212 SEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 212 ~~~~~~~~~~v~~d~~~ 228 (231)
+|++++ +|++|+|+..
T Consensus 159 ~~~~~~-~~i~iGDs~~ 174 (201)
T TIGR01491 159 LNPSLT-ETVAVGDSKN 174 (201)
T ss_pred hCCCHH-HEEEEcCCHh
Confidence 999888 8999999863
No 47
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.76 E-value=8.1e-18 Score=128.97 Aligned_cols=148 Identities=17% Similarity=0.209 Sum_probs=95.4
Q ss_pred ccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCChHH
Q 026879 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDY 129 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (231)
+|+|+||+||||+|+. .++.+++.++|.+. +++...+........ .. ..+. ..+.
T Consensus 2 ~k~viFDlDGTLiD~~----~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~--------------~~----~~~~-~~~~ 56 (197)
T PHA02597 2 KPTILTDVDGVLLSWQ----SGLPYFAQKYNIPT--DHILKMIQDERFRDP--------------GE----LFGC-DQEL 56 (197)
T ss_pred CcEEEEecCCceEchh----hccHHHHHhcCCCH--HHHHHHHhHhhhcCH--------------HH----Hhcc-cHHH
Confidence 6899999999999964 45677788888753 443332221111100 00 0111 1111
Q ss_pred HHHHHHHHHc---CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchhH-HHHHHhcCccc----cccEEEecCcCCCCCCC
Q 026879 130 FEEVYEYYAK---GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRL-RKLLKDLNVID----LFDAVVISSEVGCEKPD 201 (231)
Q Consensus 130 ~~~~~~~~~~---~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~-~~~l~~~gl~~----~fd~ii~s~~~~~~KP~ 201 (231)
....++.|.. .....++||+.++|+.|++. ++++++||+.... ...++.+++.. +|+.++++++ .||+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~---~~~k 132 (197)
T PHA02597 57 AKKLIEKYNNSDFIRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGH---DESK 132 (197)
T ss_pred HHHHhhhhhHHHHHHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEecc---Cccc
Confidence 1222222211 13357999999999999987 5788899977654 44566777765 4567777766 3678
Q ss_pred HHHHHHHHHhcCCCCCccceeeCCCcee
Q 026879 202 PRIFKAALGTSEHGFQLSCSVMPSSLFM 229 (231)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 229 (231)
|++|..+++++| |+ +|++|+|+..-
T Consensus 133 p~~~~~a~~~~~--~~-~~v~vgDs~~d 157 (197)
T PHA02597 133 EKLFIKAKEKYG--DR-VVCFVDDLAHN 157 (197)
T ss_pred HHHHHHHHHHhC--CC-cEEEeCCCHHH
Confidence 899999999999 55 79999998754
No 48
>PLN02954 phosphoserine phosphatase
Probab=99.72 E-value=3.3e-16 Score=122.38 Aligned_cols=156 Identities=13% Similarity=0.046 Sum_probs=101.0
Q ss_pred cccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCC
Q 026879 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTN 126 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (231)
.+.+|+|+||+||||+++. .+..+++.+|.+...+++...| .+ ......+.+...+.... . .
T Consensus 9 ~~~~k~viFDfDGTL~~~~-----~~~~~~~~~g~~~~~~~~~~~~---~~--------g~~~~~~~~~~~~~~~~-~-~ 70 (224)
T PLN02954 9 WRSADAVCFDVDSTVCVDE-----GIDELAEFCGAGEAVAEWTAKA---MG--------GSVPFEEALAARLSLFK-P-S 70 (224)
T ss_pred HccCCEEEEeCCCcccchH-----HHHHHHHHcCChHHHHHHHHHH---HC--------CCCCHHHHHHHHHHHcC-C-C
Confidence 3678999999999999973 5677888888753333332222 11 11122333333222211 1 1
Q ss_pred hHHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc--ccccEEEe--------cCc-
Q 026879 127 DDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI--DLFDAVVI--------SSE- 194 (231)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~--~~fd~ii~--------s~~- 194 (231)
.+.+...++. ....++||+.++|+.|+++|++++|+||+... +...++.+|+. ++|...+. +.+
T Consensus 71 ~~~~~~~~~~----~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~ 146 (224)
T PLN02954 71 LSQVEEFLEK----RPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDE 146 (224)
T ss_pred HHHHHHHHHH----ccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccC
Confidence 1222222222 22578999999999999999999999998876 68889999996 45643221 111
Q ss_pred ---CCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 195 ---VGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 195 ---~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
....+|+|++++++++++|.. +|++|+|+.
T Consensus 147 ~~~~~~~~~K~~~i~~~~~~~~~~---~~i~iGDs~ 179 (224)
T PLN02954 147 NEPTSRSGGKAEAVQHIKKKHGYK---TMVMIGDGA 179 (224)
T ss_pred CCcccCCccHHHHHHHHHHHcCCC---ceEEEeCCH
Confidence 123467789999999998863 899999986
No 49
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.72 E-value=3.3e-17 Score=119.71 Aligned_cols=85 Identities=29% Similarity=0.425 Sum_probs=68.5
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCch----------------hHHHHHHhcCccc--cccEEE-ecCcCCCCCCCHH
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT----------------RLRKLLKDLNVID--LFDAVV-ISSEVGCEKPDPR 203 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~----------------~~~~~l~~~gl~~--~fd~ii-~s~~~~~~KP~~~ 203 (231)
+.++||+.++|+.|+++|++++|+||++. .+...++.+|+.. +|.... .+++.+..||+|+
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~ 105 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPG 105 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHH
Confidence 47899999999999999999999999762 2466788888862 122222 2455677899999
Q ss_pred HHHHHHHhcCCCCCccceeeCCCce
Q 026879 204 IFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
+|+++++++|++|+ +|++|+|+..
T Consensus 106 ~~~~~~~~~~~~~~-e~i~IGDs~~ 129 (147)
T TIGR01656 106 LILEALKRLGVDAS-RSLVVGDRLR 129 (147)
T ss_pred HHHHHHHHcCCChH-HEEEEcCCHH
Confidence 99999999999998 8999999853
No 50
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.70 E-value=1.4e-16 Score=120.51 Aligned_cols=83 Identities=23% Similarity=0.346 Sum_probs=69.1
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCch---------------h-HHHHHHhcCccccccEEEec-----CcCCCCCCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT---------------R-LRKLLKDLNVIDLFDAVVIS-----SEVGCEKPD 201 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~---------------~-~~~~l~~~gl~~~fd~ii~s-----~~~~~~KP~ 201 (231)
+.++||+.++|+.|+++|++++|+||++. + +...++.+|+ .|+.++.+ ++.+..||+
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~~i~~~~~~~~~~~~~~KP~ 105 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLDGIYYCPHHPEDGCDCRKPK 105 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcCCCCC
Confidence 48899999999999999999999999752 1 3445666776 48887754 356789999
Q ss_pred HHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 202 PRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
|++|.++++++|+.|+ +|++|+|+..
T Consensus 106 p~~~~~~~~~l~~~~~-~~~~VgDs~~ 131 (181)
T PRK08942 106 PGMLLSIAERLNIDLA-GSPMVGDSLR 131 (181)
T ss_pred HHHHHHHHHHcCCChh-hEEEEeCCHH
Confidence 9999999999999988 9999999853
No 51
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.69 E-value=1.4e-15 Score=117.71 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=70.9
Q ss_pred CcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhc---CccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCC
Q 026879 142 AWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDL---NVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQ 217 (231)
Q Consensus 142 ~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~---gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~ 217 (231)
..++|||+.++|+.|+++|++++|+||++.. +...+++. ++.++|+..+.. ..+ .||+|++|.++++++|++|+
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~-~~g-~KP~p~~y~~i~~~lgv~p~ 170 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDT-TVG-LKTEAQSYVKIAGQLGSPPR 170 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEe-Ccc-cCCCHHHHHHHHHHhCcChh
Confidence 3579999999999999999999999999876 46666665 677788877643 334 69999999999999999998
Q ss_pred ccceeeCCCce
Q 026879 218 LSCSVMPSSLF 228 (231)
Q Consensus 218 ~~~~v~~d~~~ 228 (231)
+|++++|+..
T Consensus 171 -e~lfVgDs~~ 180 (220)
T TIGR01691 171 -EILFLSDIIN 180 (220)
T ss_pred -HEEEEeCCHH
Confidence 8999999853
No 52
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.68 E-value=4.5e-16 Score=115.68 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=70.2
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-------------HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHH
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-------------LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALG 210 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-------------~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~ 210 (231)
.++||+.++|+.|+++|++++|+||+... +...++.+|+. ++.++++++....||+|++|+.+++
T Consensus 42 ~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~~~ii~~~~~~~~KP~p~~~~~~~~ 119 (166)
T TIGR01664 42 FLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP--IQVLAATHAGLYRKPMTGMWEYLQS 119 (166)
T ss_pred EecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC--EEEEEecCCCCCCCCccHHHHHHHH
Confidence 47899999999999999999999997642 46778999985 3677777776778999999999999
Q ss_pred hcC--CCCCccceeeCCCc
Q 026879 211 TSE--HGFQLSCSVMPSSL 227 (231)
Q Consensus 211 ~~~--~~~~~~~~v~~d~~ 227 (231)
++| ++|+ +|++|+|+.
T Consensus 120 ~~~~~~~~~-~~v~VGD~~ 137 (166)
T TIGR01664 120 QYNSPIKMT-RSFYVGDAA 137 (166)
T ss_pred HcCCCCCch-hcEEEECCC
Confidence 999 8888 899999974
No 53
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.68 E-value=1e-16 Score=114.17 Aligned_cols=81 Identities=17% Similarity=0.083 Sum_probs=71.7
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCC-chh-HHHHHHhcC-------ccccccEEEecCcCCCCCCCHHHHHHHHHhcC-
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNF-DTR-LRKLLKDLN-------VIDLFDAVVISSEVGCEKPDPRIFKAALGTSE- 213 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~-~~~-~~~~l~~~g-------l~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~- 213 (231)
.++||+.++|+.|+++|++++|+||+ ... ....++..+ +.++|+.++++++ +|+|++|..+++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~----~pkp~~~~~a~~~lg~ 104 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYW----LPKSPRLVEIALKLNG 104 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCC----CcHHHHHHHHHHHhcC
Confidence 67899999999999999999999998 555 467788888 8899999998753 589999999999999
Q ss_pred -CCCCccceeeCCCcee
Q 026879 214 -HGFQLSCSVMPSSLFM 229 (231)
Q Consensus 214 -~~~~~~~~v~~d~~~~ 229 (231)
+.|+ +|++|+|+...
T Consensus 105 ~~~p~-~~l~igDs~~n 120 (128)
T TIGR01681 105 VLKPK-SILFVDDRPDN 120 (128)
T ss_pred CCCcc-eEEEECCCHhH
Confidence 9998 99999998754
No 54
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.68 E-value=4e-16 Score=111.97 Aligned_cols=78 Identities=27% Similarity=0.372 Sum_probs=67.4
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCc--------hh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhc-C
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFD--------TR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTS-E 213 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~--------~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~-~ 213 (231)
.++||+.++|+.|+++|++++|+||+. .. +...++.+++. |+.++.+. +..||+|++|+++++++ +
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~--~~~KP~~~~~~~~~~~~~~ 100 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--IDVLYACP--HCRKPKPGMFLEALKRFNE 100 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EEEEEECC--CCCCCChHHHHHHHHHcCC
Confidence 789999999999999999999999987 54 68889999986 44445444 67899999999999999 5
Q ss_pred CCCCccceeeCCC
Q 026879 214 HGFQLSCSVMPSS 226 (231)
Q Consensus 214 ~~~~~~~~v~~d~ 226 (231)
++|+ +|++|+|+
T Consensus 101 ~~~~-~~v~IGD~ 112 (132)
T TIGR01662 101 IDPE-ESVYVGDQ 112 (132)
T ss_pred CChh-heEEEcCC
Confidence 9988 99999993
No 55
>PRK06769 hypothetical protein; Validated
Probab=99.67 E-value=3.2e-16 Score=117.52 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=69.9
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCch---------hHHHHHHhcCccccccEEE-ecCcCCCCCCCHHHHHHHHHhc
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT---------RLRKLLKDLNVIDLFDAVV-ISSEVGCEKPDPRIFKAALGTS 212 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~---------~~~~~l~~~gl~~~fd~ii-~s~~~~~~KP~~~~~~~~~~~~ 212 (231)
+.++||+.++|+.|+++|++++|+||+.. .+...++.+|+.++|.... ++++.+..||+|++|.++++++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l 106 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKH 106 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHc
Confidence 47899999999999999999999999763 2344467777766554433 4666788999999999999999
Q ss_pred CCCCCccceeeCCCce
Q 026879 213 EHGFQLSCSVMPSSLF 228 (231)
Q Consensus 213 ~~~~~~~~~v~~d~~~ 228 (231)
+++|+ +|++|+|+..
T Consensus 107 ~~~p~-~~i~IGD~~~ 121 (173)
T PRK06769 107 GLDLT-QCAVIGDRWT 121 (173)
T ss_pred CCCHH-HeEEEcCCHH
Confidence 99988 8999999853
No 56
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.66 E-value=9e-16 Score=115.51 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=68.5
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCch---------------h-HHHHHHhcCccccccEEEec-----------CcC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT---------------R-LRKLLKDLNVIDLFDAVVIS-----------SEV 195 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~---------------~-~~~~l~~~gl~~~fd~ii~s-----------~~~ 195 (231)
+.++||+.++|+.|+++|++++|+||++. . +...+...++. |+.++.+ ++.
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~ 102 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYYCPHHPEGVEEFRQVC 102 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEECCCCCcccccccCCC
Confidence 48999999999999999999999999773 1 23456666665 7777654 355
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 196 GCEKPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 196 ~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
+..||+|++|.++++++|++|+ +|++|+|+..
T Consensus 103 ~~~KP~p~~~~~a~~~~~~~~~-~~v~VGDs~~ 134 (176)
T TIGR00213 103 DCRKPKPGMLLQARKELHIDMA-QSYMVGDKLE 134 (176)
T ss_pred CCCCCCHHHHHHHHHHcCcChh-hEEEEcCCHH
Confidence 6789999999999999999998 9999999864
No 57
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.65 E-value=2.1e-15 Score=117.51 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=98.0
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCChHHH
Q 026879 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYF 130 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (231)
++|+||+||||.+..... .++++++. ...+++.+.+. .......+.....+...... ..
T Consensus 4 ~~vifDfDgTi~~~d~~~-----~~~~~~~~-~~~~~i~~~~~-----------~g~~~~~~~~~~~~~~l~~~----~~ 62 (219)
T PRK09552 4 IQIFCDFDGTITNNDNII-----AIMKKFAP-PEWEELKDDIL-----------SQELSIQEGVGQMFQLLPSN----LK 62 (219)
T ss_pred cEEEEcCCCCCCcchhhH-----HHHHHhCH-HHHHHHHHHHH-----------hCCcCHHHHHHHHHHhCCCC----ch
Confidence 489999999999987543 24444442 12233322221 11122233334443332221 12
Q ss_pred HHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc--cc--cEEEecCcCCCCCCCHHH-
Q 026879 131 EEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID--LF--DAVVISSEVGCEKPDPRI- 204 (231)
Q Consensus 131 ~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~--~f--d~ii~s~~~~~~KP~~~~- 204 (231)
+...+.+.. ...++||+.++|+.|+++|++++|+||+... +...++.+ +.. .+ +..+..+.+...||+|..
T Consensus 63 ~~~~~~~~~--~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~ 139 (219)
T PRK09552 63 EEIIQFLLE--TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDE 139 (219)
T ss_pred HHHHHHHHh--CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccc
Confidence 333333332 2689999999999999999999999999876 68888887 643 22 344555666777888765
Q ss_pred ---------HHHHHHhcCCCCCccceeeCCCc
Q 026879 205 ---------FKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 205 ---------~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
...+++.++..+. +|++|+|+.
T Consensus 140 ~~~~~~~~~K~~~l~~~~~~~~-~~i~iGDs~ 170 (219)
T PRK09552 140 HCQNHCGCCKPSLIRKLSDTND-FHIVIGDSI 170 (219)
T ss_pred cccccCCCchHHHHHHhccCCC-CEEEEeCCH
Confidence 3578999998887 899999985
No 58
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.65 E-value=1.1e-15 Score=112.96 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=71.9
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCc---------------hh-HHHHHHhcCccccccEEE-e----cCcCCCCCCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFD---------------TR-LRKLLKDLNVIDLFDAVV-I----SSEVGCEKPD 201 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~---------------~~-~~~~l~~~gl~~~fd~ii-~----s~~~~~~KP~ 201 (231)
+.++||+.++|+.|+++|++++|+||.. .. +...++.+|+. |+.++ + +++.+..||+
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~KP~ 105 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRKPK 105 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCCCC
Confidence 5899999999999999999999999962 22 57778999996 87665 4 5888899999
Q ss_pred HHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 202 PRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
|++|+.++++++++|+ +|++|+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~-e~l~IGD~~ 130 (161)
T TIGR01261 106 IKLLEPYLKKNLIDKA-RSYVIGDRE 130 (161)
T ss_pred HHHHHHHHHHcCCCHH-HeEEEeCCH
Confidence 9999999999999988 999999975
No 59
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.65 E-value=7.3e-17 Score=120.00 Aligned_cols=87 Identities=16% Similarity=0.046 Sum_probs=78.0
Q ss_pred CcccCCCHHHHHHHHhHCCCeEEEEeCC-chh-HHHHHHhcCcc---------ccccEEEecCcCCCCCCCHHHHHHHHH
Q 026879 142 AWHLPHGAYQSILLLKDAGVKVAVVSNF-DTR-LRKLLKDLNVI---------DLFDAVVISSEVGCEKPDPRIFKAALG 210 (231)
Q Consensus 142 ~~~~~pgv~~~L~~L~~~g~~i~i~Sn~-~~~-~~~~l~~~gl~---------~~fd~ii~s~~~~~~KP~~~~~~~~~~ 210 (231)
..+++||+.++|+.|+++|++++|+||+ ... +...++.+++. ++|+.++++++....||.+.+++.+.+
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~ 122 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNK 122 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhh
Confidence 3689999999999999999999999987 555 68889999998 999999999988888999999988888
Q ss_pred hc--CCCCCccceeeCCCcee
Q 026879 211 TS--EHGFQLSCSVMPSSLFM 229 (231)
Q Consensus 211 ~~--~~~~~~~~~v~~d~~~~ 229 (231)
.+ |++|+ +|++|+|+..-
T Consensus 123 ~~~~gl~p~-e~l~VgDs~~d 142 (174)
T TIGR01685 123 VDPSVLKPA-QILFFDDRTDN 142 (174)
T ss_pred cccCCCCHH-HeEEEcChhHh
Confidence 87 89998 99999998754
No 60
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.63 E-value=1.2e-14 Score=108.55 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=110.7
Q ss_pred ccccEEEEecCCccccccccHHHHHH----HHH-HHhCCCCCHHH-HH-HHHHHhhhCCChhhhccCCCcHHHHHHHHHH
Q 026879 48 KAYDAVLLDAGGTLLQLAEPVEETYA----SIA-RKYGLNVDSAD-IK-KGFRKAFAAPWPEKLRYEGDGRPFWRLVVSE 120 (231)
Q Consensus 48 ~~~k~iiFD~DGTL~d~~~~~~~~~~----~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (231)
.++++++||+|+||+........+.+ +.+ +++|++.+..+ .. ..|++. + .....+...
T Consensus 13 ~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~Y-G--------------~t~aGL~~~ 77 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEY-G--------------LTMAGLKAV 77 (244)
T ss_pred ccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHH-h--------------HHHHHHHHh
Confidence 37899999999999998766655555 333 34676643221 11 111111 0 111111111
Q ss_pred hcCCCChHHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCC---
Q 026879 121 ATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVG--- 196 (231)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~--- 196 (231)
....+.++ +..+.......+.++|.+-.+++|..|+.++ .+++||+.+. +.++|+.+||.+-|+++++.+-..
T Consensus 78 ~~~~d~de-Y~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~ 154 (244)
T KOG3109|consen 78 GYIFDADE-YHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIE 154 (244)
T ss_pred cccCCHHH-HHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCC
Confidence 11112222 2222222222233789999999999999874 8899999986 799999999999999999876443
Q ss_pred ---CCCCCHHHHHHHHHhcCCC-CCccceeeCCCceee
Q 026879 197 ---CEKPDPRIFKAALGTSEHG-FQLSCSVMPSSLFMI 230 (231)
Q Consensus 197 ---~~KP~~~~~~~~~~~~~~~-~~~~~~v~~d~~~~V 230 (231)
..||++++|+++++..|++ |. ++++++|+.-+|
T Consensus 155 ~~~vcKP~~~afE~a~k~agi~~p~-~t~FfDDS~~NI 191 (244)
T KOG3109|consen 155 KTVVCKPSEEAFEKAMKVAGIDSPR-NTYFFDDSERNI 191 (244)
T ss_pred CceeecCCHHHHHHHHHHhCCCCcC-ceEEEcCchhhH
Confidence 4699999999999999999 66 999999998655
No 61
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.61 E-value=3.4e-14 Score=116.00 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=103.0
Q ss_pred ccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCCh
Q 026879 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTND 127 (231)
Q Consensus 48 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (231)
.++++|+||+||||+.. +.+.+++..+|.......+.+.+ +. ......+.....+... ....+
T Consensus 108 ~~~~LvvfDmDGTLI~~-----e~i~eia~~~g~~~~v~~it~~~---m~--------Geldf~esl~~rv~~l-~g~~~ 170 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQI-----ECIDEIAKLAGTGEEVAEVTERA---MR--------GELDFEASLRQRVATL-KGADA 170 (322)
T ss_pred cCCCEEEEECCCCCcch-----HHHHHHHHHhCCchHHHHHHHHH---Hc--------CCcCHHHHHHHHHHHh-CCCCH
Confidence 46899999999999843 46777777787764333333221 11 1222222222222222 11222
Q ss_pred HHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcccccc-------EEEecC---cCC
Q 026879 128 DYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFD-------AVVISS---EVG 196 (231)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd-------~ii~s~---~~~ 196 (231)
..++.+ . ...+++||+.++|+.|++.|++++|+|++... ....++.+|+...+. +.+++. ++.
T Consensus 171 ~il~~v----~--~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv 244 (322)
T PRK11133 171 NILQQV----R--ENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIV 244 (322)
T ss_pred HHHHHH----H--HhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccC
Confidence 222222 2 12689999999999999999999999998876 577778888865442 222222 233
Q ss_pred CCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 197 CEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 197 ~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
..||+++.++.+++++|++++ +|++|+|+.
T Consensus 245 ~~k~K~~~L~~la~~lgi~~~-qtIaVGDg~ 274 (322)
T PRK11133 245 DAQYKADTLTRLAQEYEIPLA-QTVAIGDGA 274 (322)
T ss_pred CcccHHHHHHHHHHHcCCChh-hEEEEECCH
Confidence 568999999999999999988 899999975
No 62
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.59 E-value=2.6e-14 Score=111.56 Aligned_cols=77 Identities=12% Similarity=-0.004 Sum_probs=64.0
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCC----chh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNF----DTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQ 217 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~----~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~ 217 (231)
..+++++.++|+.|+++|++++++||. ... +...++.+|+.++|+.++++++.+..||++. .+++++++
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i--- 186 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI--- 186 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC---
Confidence 467778999999999999999999997 434 5777889999999999999998888899886 34566664
Q ss_pred ccceeeCCCc
Q 026879 218 LSCSVMPSSL 227 (231)
Q Consensus 218 ~~~~v~~d~~ 227 (231)
+++++|+.
T Consensus 187 --~i~vGDs~ 194 (237)
T TIGR01672 187 --RIHYGDSD 194 (237)
T ss_pred --eEEEeCCH
Confidence 68899985
No 63
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.57 E-value=9.1e-14 Score=105.50 Aligned_cols=83 Identities=13% Similarity=0.206 Sum_probs=67.3
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCc--------------------CCCCCCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE--------------------VGCEKPD 201 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~--------------------~~~~KP~ 201 (231)
.+++||+.++|+.|+++|++++|+||+... +...++.+|+.++|+.+++++. .....++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 589999999999999999999999998876 6888999999999999997532 1122344
Q ss_pred HHHHHHHHHhcCCCCCccceeeCCCcee
Q 026879 202 PRIFKAALGTSEHGFQLSCSVMPSSLFM 229 (231)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 229 (231)
++++++..+.. +. ++++++|+..-
T Consensus 151 ~~~~~~~~~~~---~~-~~i~iGD~~~D 174 (188)
T TIGR01489 151 GKVIHKLSEPK---YQ-HIIYIGDGVTD 174 (188)
T ss_pred HHHHHHHHhhc---Cc-eEEEECCCcch
Confidence 77888887765 44 89999998753
No 64
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.55 E-value=3e-14 Score=101.99 Aligned_cols=84 Identities=30% Similarity=0.402 Sum_probs=75.7
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCC----------------CCCHHHH
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCE----------------KPDPRIF 205 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~----------------KP~~~~~ 205 (231)
..++|++.++|+.|+++|++++++||+... +...++..++..+|+.+++++..... ||++..+
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKL 102 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHH
Confidence 589999999999999999999999998876 68899999998889999988876655 9999999
Q ss_pred HHHHHhcCCCCCccceeeCCCc
Q 026879 206 KAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
..+++.++..++ .+++++|+.
T Consensus 103 ~~~~~~~~~~~~-~~~~igD~~ 123 (139)
T cd01427 103 LAALKLLGVDPE-EVLMVGDSL 123 (139)
T ss_pred HHHHHHcCCChh-hEEEeCCCH
Confidence 999999998876 899999975
No 65
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.54 E-value=9.4e-14 Score=107.03 Aligned_cols=84 Identities=17% Similarity=0.087 Sum_probs=63.6
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcC----CCCCCCHHHHHHHHHhcCCCCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEV----GCEKPDPRIFKAALGTSEHGFQ 217 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~----~~~KP~~~~~~~~~~~~~~~~~ 217 (231)
.+++||+.++|+.|+++ ++++|+||+... +...++.+|+..+|+..+..++. +..+|.|.....++++++..+.
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~ 145 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGY 145 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCC
Confidence 58899999999999999 999999999887 68889999999888765443221 2223444445666666666665
Q ss_pred ccceeeCCCce
Q 026879 218 LSCSVMPSSLF 228 (231)
Q Consensus 218 ~~~~v~~d~~~ 228 (231)
+|++|+|+..
T Consensus 146 -~~v~iGDs~~ 155 (205)
T PRK13582 146 -RVIAAGDSYN 155 (205)
T ss_pred -eEEEEeCCHH
Confidence 8999999863
No 66
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.45 E-value=3.4e-12 Score=95.99 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=66.3
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcC------------CCCCCCHHHHHHHH
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEV------------GCEKPDPRIFKAAL 209 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~------------~~~KP~~~~~~~~~ 209 (231)
+.++||+.++|+.++++|++++|+|++... +...++.+|+..+|...+..++. .....++..++..+
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~ 151 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELL 151 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHH
Confidence 568999999999999999999999998877 68889999998877655444321 11223356788888
Q ss_pred HhcCCCCCccceeeCCCc
Q 026879 210 GTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 210 ~~~~~~~~~~~~v~~d~~ 227 (231)
++.+++++ ++++++|+.
T Consensus 152 ~~~~~~~~-~~~~iGDs~ 168 (177)
T TIGR01488 152 EESKITLK-KIIAVGDSV 168 (177)
T ss_pred HHhCCCHH-HEEEEeCCH
Confidence 88888877 899999975
No 67
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.44 E-value=1.7e-12 Score=100.69 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=65.7
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccc---cEEEecCcCCCCCCCHHHH----------HHH
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF---DAVVISSEVGCEKPDPRIF----------KAA 208 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~f---d~ii~s~~~~~~KP~~~~~----------~~~ 208 (231)
.+++||+.++|+.|+++|++++|+|++... +..+++.++....| +.++..+.+...||.|..+ ..+
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 689999999999999999999999998876 67788877544444 3345555566778888776 477
Q ss_pred HHhcCCCCCccceeeCCCc
Q 026879 209 LGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 209 ~~~~~~~~~~~~~v~~d~~ 227 (231)
+++++..+. .|++|+|+.
T Consensus 149 l~~~~~~~~-~~i~iGDg~ 166 (214)
T TIGR03333 149 IRKLSEPND-YHIVIGDSV 166 (214)
T ss_pred HHHHhhcCC-cEEEEeCCH
Confidence 888777666 889999975
No 68
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.42 E-value=4.3e-12 Score=97.52 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=67.0
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccE-EEecCc----------CCCCCCCHHHHHHHHH
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDA-VVISSE----------VGCEKPDPRIFKAALG 210 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~-ii~s~~----------~~~~KP~~~~~~~~~~ 210 (231)
..++|++.++|+.++++|++++|+||+... +...++.+|++++|.. +...++ ....+++...++..++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 478999999999999999999999999877 6888899999887755 222121 1233556677899999
Q ss_pred hcCCCCCccceeeCCCc
Q 026879 211 TSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 211 ~~~~~~~~~~~v~~d~~ 227 (231)
+.+++++ .|++++|+.
T Consensus 166 ~~~~~~~-~~~~~gDs~ 181 (202)
T TIGR01490 166 EEQIDLK-DSYAYGDSI 181 (202)
T ss_pred HcCCCHH-HcEeeeCCc
Confidence 9999887 899999986
No 69
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.42 E-value=1.5e-12 Score=97.32 Aligned_cols=74 Identities=24% Similarity=0.161 Sum_probs=62.6
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCc-hh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccce
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFD-TR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCS 221 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~-~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 221 (231)
.++||+.++|+.|++.|++++|+||++ .. +...++.+++..++ +..||+|++|..++++++++|+ +|+
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~---------~~~KP~p~~~~~~l~~~~~~~~-~~l 112 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLP---------HAVKPPGCAFRRAHPEMGLTSE-QVA 112 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEc---------CCCCCChHHHHHHHHHcCCCHH-HEE
Confidence 678999999999999999999999987 44 46666777764321 4579999999999999999988 899
Q ss_pred eeCCCc
Q 026879 222 VMPSSL 227 (231)
Q Consensus 222 v~~d~~ 227 (231)
+|+|+.
T Consensus 113 ~IGDs~ 118 (170)
T TIGR01668 113 VVGDRL 118 (170)
T ss_pred EECCcc
Confidence 999986
No 70
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.37 E-value=1.5e-12 Score=106.96 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=71.2
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHh----cCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKD----LNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQL 218 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~----~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~ 218 (231)
.+|||+.++|+.|+++|++++|+||.+.. +...++. +++.++|+.+.++ .||+|+.+.++++++|+.++
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~- 104 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNLGTD- 104 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCCCcC-
Confidence 46899999999999999999999998866 7888998 8999999988765 68999999999999999998
Q ss_pred cceeeCCCce
Q 026879 219 SCSVMPSSLF 228 (231)
Q Consensus 219 ~~~v~~d~~~ 228 (231)
++++|+|+..
T Consensus 105 ~~vfidD~~~ 114 (320)
T TIGR01686 105 SFLFIDDNPA 114 (320)
T ss_pred cEEEECCCHH
Confidence 9999999864
No 71
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.37 E-value=2.4e-11 Score=93.29 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=90.5
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHh--cCCCChH
Q 026879 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEA--TGCTNDD 128 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 128 (231)
..++||+||||++. .|..+..+.|.. ...... ........+....+.-. .+.+.+.
T Consensus 2 ~la~FDlD~TLi~~------~w~~~~~~~g~~--~~~~~~--------------~~~~~~~~~~~~r~~ll~~~g~~~~~ 59 (203)
T TIGR02137 2 EIACLDLEGVLVPE------IWIAFAEKTGID--ALKATT--------------RDIPDYDVLMKQRLRILDEHGLKLGD 59 (203)
T ss_pred eEEEEeCCcccHHH------HHHHHHHHcCCc--HHHHHh--------------cCCcCHHHHHHHHHHHHHHCCCCHHH
Confidence 46999999999964 477777778843 111110 01111122222222111 1333333
Q ss_pred HHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccE--------EEecCcCCCCC
Q 026879 129 YFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDA--------VVISSEVGCEK 199 (231)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~--------ii~s~~~~~~K 199 (231)
. +...+ .++++||+.++|+.|++.+ +++|+|++... +...++.+|++.+|.. .++.... ..|
T Consensus 60 i-~~~~~------~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~-~~~ 130 (203)
T TIGR02137 60 I-QEVIA------TLKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQL-RQK 130 (203)
T ss_pred H-HHHHH------hCCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeee-cCc
Confidence 2 22222 2589999999999999984 99999999887 6889999999988863 2222211 467
Q ss_pred CCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 200 PDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 200 P~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
|.+....+.+++.+. +|++++|+.
T Consensus 131 ~~K~~~l~~l~~~~~----~~v~vGDs~ 154 (203)
T TIGR02137 131 DPKRQSVIAFKSLYY----RVIAAGDSY 154 (203)
T ss_pred chHHHHHHHHHhhCC----CEEEEeCCH
Confidence 788877777777664 789999975
No 72
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.37 E-value=5.4e-12 Score=103.83 Aligned_cols=82 Identities=21% Similarity=0.399 Sum_probs=69.0
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCC---------------chh-HHHHHHhcCccccccEEEe-----cCcCCCCCCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNF---------------DTR-LRKLLKDLNVIDLFDAVVI-----SSEVGCEKPD 201 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~---------------~~~-~~~~l~~~gl~~~fd~ii~-----s~~~~~~KP~ 201 (231)
..++||+.++|..|+++|++++|+||. ... +...++..++. |+.++. +++.+..||+
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd~i~i~~~~~sd~~~~rKP~ 106 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FDEVLICPHFPEDNCSCRKPK 106 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--eeeEEEeCCcCcccCCCCCCC
Confidence 589999999999999999999999995 122 45567888884 777654 3567789999
Q ss_pred HHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 202 PRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
|+++..++++++++|+ ++++|+|+.
T Consensus 107 p~~l~~a~~~l~v~~~-~svmIGDs~ 131 (354)
T PRK05446 107 TGLVEEYLAEGAIDLA-NSYVIGDRE 131 (354)
T ss_pred HHHHHHHHHHcCCCcc-cEEEEcCCH
Confidence 9999999999999998 999999975
No 73
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.36 E-value=5.5e-12 Score=90.74 Aligned_cols=72 Identities=28% Similarity=0.312 Sum_probs=61.8
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCC
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPS 225 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d 225 (231)
|++.+-+..++++|+++.|+||..+. +...++.+|+. .+. ++.||.+..|.+|+++++++++ +|+||+|
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~----fi~-----~A~KP~~~~fr~Al~~m~l~~~-~vvmVGD 118 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP----FIY-----RAKKPFGRAFRRALKEMNLPPE-EVVMVGD 118 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc----eee-----cccCccHHHHHHHHHHcCCChh-HEEEEcc
Confidence 55667889999999999999997754 88889998873 444 4589999999999999999999 9999999
Q ss_pred Cce
Q 026879 226 SLF 228 (231)
Q Consensus 226 ~~~ 228 (231)
++.
T Consensus 119 qL~ 121 (175)
T COG2179 119 QLF 121 (175)
T ss_pred hhh
Confidence 863
No 74
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.36 E-value=6.6e-12 Score=108.18 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=70.4
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCch-------------hHHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHH
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT-------------RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALG 210 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~-------------~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~ 210 (231)
.++||+.+.|+.|++.|++++|+||... .+..+++.+|+. |+.+++++....+||+|.++..+++
T Consensus 197 ~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~pGm~~~a~~ 274 (526)
T TIGR01663 197 IIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKE 274 (526)
T ss_pred ecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 3689999999999999999999999544 256778888885 8988888888889999999999999
Q ss_pred hcC----CCCCccceeeCCCc
Q 026879 211 TSE----HGFQLSCSVMPSSL 227 (231)
Q Consensus 211 ~~~----~~~~~~~~v~~d~~ 227 (231)
+++ ++++ ++++|+|..
T Consensus 275 ~~~~~~~Id~~-~S~~VGDaa 294 (526)
T TIGR01663 275 EANDGTEIQED-DCFFVGDAA 294 (526)
T ss_pred hcCcccCCCHH-HeEEeCCcc
Confidence 985 7777 999999974
No 75
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.34 E-value=4.5e-12 Score=100.31 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHH
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRI 204 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~ 204 (231)
.||+.++|++|+++|++++|+||+.++ +...++.+|+..+|+.++++++....||+|+.
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e~ 207 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAEEYSTMST 207 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCccccCCCCccc
Confidence 388999999999999999999998876 78899999999999999999999999999863
No 76
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.34 E-value=4.2e-11 Score=92.37 Aligned_cols=157 Identities=20% Similarity=0.215 Sum_probs=104.5
Q ss_pred ccccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCCh
Q 026879 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTND 127 (231)
Q Consensus 48 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (231)
++.+.++||+||||++ ...+..+....|.. +++.....+.+... ..........++...+. ..
T Consensus 3 ~~~~L~vFD~D~TLi~-----~~~~~~~~~~~g~~---~~v~~~t~~~~~~~--------~~~~~~~~~~v~~l~g~-~~ 65 (212)
T COG0560 3 RMKKLAVFDLDGTLIN-----AELIDELARGAGVG---EEVLAITERAMRGE--------LDFEESLRLRVALLKGL-PV 65 (212)
T ss_pred CccceEEEecccchhh-----HHHHHHHHHHhCCH---HHHHHHHHHHhccc--------ccHHHHHHHHHHHhCCC-CH
Confidence 3568899999999998 33555555556554 33333222222211 12233334444444443 33
Q ss_pred HHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCc---CC-------
Q 026879 128 DYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE---VG------- 196 (231)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~---~~------- 196 (231)
+..+.+.+.+ ..++||+.++++.+++.|++++|+|.+... +..+.+.+|++..+...+..++ .|
T Consensus 66 ~~v~~~~~~~-----~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~ 140 (212)
T COG0560 66 EVLEEVREEF-----LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPIC 140 (212)
T ss_pred HHHHHHHHhc-----CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeec
Confidence 3344444443 589999999999999999999999999987 5889999999988866555554 11
Q ss_pred CCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 197 CEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 197 ~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
..+-+.......++++|.+++ +++.++|+.
T Consensus 141 ~~~~K~~~l~~~~~~~g~~~~-~~~a~gDs~ 170 (212)
T COG0560 141 DGEGKAKALRELAAELGIPLE-ETVAYGDSA 170 (212)
T ss_pred CcchHHHHHHHHHHHcCCCHH-HeEEEcCch
Confidence 112245677899999999988 888889975
No 77
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.33 E-value=5.4e-12 Score=97.62 Aligned_cols=78 Identities=24% Similarity=0.434 Sum_probs=67.5
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCcccee
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSV 222 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 222 (231)
+++|++.++|+.|++.|++++++|+.+.. .....+.+|+. +.++.+... .||++.+|..+++.+++++. .|++
T Consensus 127 ~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~---~~~v~a~~~--~kP~~k~~~~~i~~l~~~~~-~v~~ 200 (215)
T PF00702_consen 127 PLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF---DSIVFARVI--GKPEPKIFLRIIKELQVKPG-EVAM 200 (215)
T ss_dssp EBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC---SEEEEESHE--TTTHHHHHHHHHHHHTCTGG-GEEE
T ss_pred cchhhhhhhhhhhhccCcceeeeeccccccccccccccccc---ccccccccc--ccccchhHHHHHHHHhcCCC-EEEE
Confidence 68999999999999999999999986665 68899999993 454554433 79999999999999999999 9999
Q ss_pred eCCCc
Q 026879 223 MPSSL 227 (231)
Q Consensus 223 ~~d~~ 227 (231)
++|.+
T Consensus 201 vGDg~ 205 (215)
T PF00702_consen 201 VGDGV 205 (215)
T ss_dssp EESSG
T ss_pred EccCH
Confidence 99986
No 78
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.32 E-value=2.7e-12 Score=93.82 Aligned_cols=81 Identities=10% Similarity=-0.041 Sum_probs=73.2
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc-cccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccc
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID-LFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSC 220 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~-~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 220 (231)
+.++||+.++|+.|+ ++++++|+||+..+ +..+++.+++.. +|+.+++++++...||+ |.++++++|++|+ +|
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~-~~ 118 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLS-NV 118 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChh-cE
Confidence 588999999999999 56999999999987 688899999865 56999999999999997 9999999999998 99
Q ss_pred eeeCCCce
Q 026879 221 SVMPSSLF 228 (231)
Q Consensus 221 ~v~~d~~~ 228 (231)
++|+|+..
T Consensus 119 i~i~Ds~~ 126 (148)
T smart00577 119 IIIDDSPD 126 (148)
T ss_pred EEEECCHH
Confidence 99999864
No 79
>PRK11590 hypothetical protein; Provisional
Probab=99.32 E-value=2.7e-11 Score=93.77 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=73.8
Q ss_pred ccEEEEecCCccccccccHHHHHHHHH-HHhCCCCCH-HHHHHHHHHhhhCCChhhhccCCCc-HHHHHHHHHHhcCCC-
Q 026879 50 YDAVLLDAGGTLLQLAEPVEETYASIA-RKYGLNVDS-ADIKKGFRKAFAAPWPEKLRYEGDG-RPFWRLVVSEATGCT- 125 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 125 (231)
.|+++||+||||+ .+.....+...+ .+++.+... +.....+ +............. ..+.. ....+.+
T Consensus 6 ~k~~iFD~DGTL~--~~d~~~~~~~~~~~~~g~~~~~~~~~~~~i----g~~l~~~~~~~~~~~~~~~~---~~~~g~~~ 76 (211)
T PRK11590 6 RRVVFFDLDGTLH--QQDMFGSFLRYLLRRQPLNLLLVLPLLPVI----GLGLLVKGRAARWPMSLLLW---GCTFGHSE 76 (211)
T ss_pred ceEEEEecCCCCc--ccchHHHHHHHHHHhcchhhHHHhHHHHHh----ccCcccchhhhhhhHHHHHH---HHHcCCCH
Confidence 4789999999999 344566666666 777755322 3332222 11111100000000 00000 0111211
Q ss_pred --ChHHHHHHHHHHHcCCCcccCCCHHHHH-HHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecC
Q 026879 126 --NDDYFEEVYEYYAKGEAWHLPHGAYQSI-LLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISS 193 (231)
Q Consensus 126 --~~~~~~~~~~~~~~~~~~~~~pgv~~~L-~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~ 193 (231)
.++..+.+.+.|... ..++||+.++| +.|++.|++++|+||+... +...++.+|+.. .+.++++.
T Consensus 77 ~~~~~~~~~f~~~~~~~--~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~-~~~~i~t~ 145 (211)
T PRK11590 77 ARLQALEADFVRWFRDN--VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLP-RVNLIASQ 145 (211)
T ss_pred HHHHHHHHHHHHHHHHh--CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccc-cCceEEEE
Confidence 122333333334322 46799999999 6788899999999999887 588888888632 44555554
No 80
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.32 E-value=4.5e-12 Score=103.40 Aligned_cols=87 Identities=17% Similarity=0.078 Sum_probs=76.2
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc-cccEEEecC-------cCCCCCCCHHHHHHHHHhcC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID-LFDAVVISS-------EVGCEKPDPRIFKAALGTSE 213 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~-~fd~ii~s~-------~~~~~KP~~~~~~~~~~~~~ 213 (231)
..++|++.++|+.|+++|++++++||.+.. ....++.+++.+ +|+.+++.+ +.+..||+|++++.++++++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~ 265 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKI 265 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 488999999999999999999999998876 588899999987 999999988 45678999999999999998
Q ss_pred CCCCccceeeCCCcee
Q 026879 214 HGFQLSCSVMPSSLFM 229 (231)
Q Consensus 214 ~~~~~~~~v~~d~~~~ 229 (231)
..+.+.|++|+|+..-
T Consensus 266 ~~~~~~~~~vgD~~~d 281 (300)
T PHA02530 266 APKYDVLLAVDDRDQV 281 (300)
T ss_pred ccCceEEEEEcCcHHH
Confidence 8443399999998753
No 81
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.28 E-value=3.1e-12 Score=94.05 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=58.8
Q ss_pred HHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 152 SILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 152 ~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
+|+.|+++|++++|+||.+.. +...++.+|+..+|+. .||+|+.+.++++++|++++ +|++++|+.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~---------~~~k~~~~~~~~~~~~~~~~-~~~~vGDs~ 102 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQG---------QSNKLIAFSDILEKLALAPE-NVAYIGDDL 102 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEec---------ccchHHHHHHHHHHcCCCHH-HEEEECCCH
Confidence 899999999999999998866 6889999999877753 37889999999999999988 899999975
No 82
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.25 E-value=1.1e-11 Score=92.08 Aligned_cols=67 Identities=13% Similarity=0.289 Sum_probs=59.8
Q ss_pred HHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 151 QSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 151 ~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
..++.|++.|++++|+||.... +...++.+|+..+|+.+ ||+|+.|+.++++++++++ +|++|+|+.
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~---------kpkp~~~~~~~~~l~~~~~-ev~~iGD~~ 108 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGI---------KKKTEPYAQMLEEMNISDA-EVCYVGDDL 108 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecC---------CCCHHHHHHHHHHcCcCHH-HEEEECCCH
Confidence 4688899999999999998876 69999999999888742 8999999999999999988 899999985
No 83
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.24 E-value=2.9e-11 Score=95.58 Aligned_cols=78 Identities=21% Similarity=0.173 Sum_probs=64.9
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HH--HHHHhcCccc-cccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCcc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LR--KLLKDLNVID-LFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLS 219 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~--~~l~~~gl~~-~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~ 219 (231)
.++||+.++|+.|+++|++++++||+.+. .. ..++.+|+.. +|+.+++++++.. +.+..++++++..|. .
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~~-~ 97 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAV-----QMILESKKRFDIRNG-I 97 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHH-----HHHHhhhhhccCCCc-e
Confidence 67899999999999999999999997765 33 7899999997 9999999986532 467777788888777 7
Q ss_pred ceeeCCCc
Q 026879 220 CSVMPSSL 227 (231)
Q Consensus 220 ~~v~~d~~ 227 (231)
|++++|..
T Consensus 98 ~~~vGd~~ 105 (242)
T TIGR01459 98 IYLLGHLE 105 (242)
T ss_pred EEEeCCcc
Confidence 88888854
No 84
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.23 E-value=8e-11 Score=91.97 Aligned_cols=75 Identities=11% Similarity=-0.013 Sum_probs=59.4
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCc----hh-HHHHHHhcCc--cccccEEEecCcCCCCCCCHHHHHHHHHhcCCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFD----TR-LRKLLKDLNV--IDLFDAVVISSEVGCEKPDPRIFKAALGTSEHG 215 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~----~~-~~~~l~~~gl--~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~ 215 (231)
..++||+.++|+.|+++|++++++||.+ .. ....++.+|+ .++|+.+++.+.. .||++.. +++++++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~--~K~~K~~---~l~~~~i- 186 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKP--GQYTKTQ---WLKKKNI- 186 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCC--CCCCHHH---HHHhcCC-
Confidence 6899999999999999999999999953 23 3566667999 8999988887753 7888754 4555664
Q ss_pred CCccceeeCCCc
Q 026879 216 FQLSCSVMPSSL 227 (231)
Q Consensus 216 ~~~~~~v~~d~~ 227 (231)
+++++|+.
T Consensus 187 ----~I~IGDs~ 194 (237)
T PRK11009 187 ----RIFYGDSD 194 (237)
T ss_pred ----eEEEcCCH
Confidence 78899975
No 85
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.18 E-value=2e-11 Score=98.54 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=63.8
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCchhH--HHHHHhcCccccccEEE---ecCcCCCCCCCHHHHHHHHHhcCCCCCcc
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFDTRL--RKLLKDLNVIDLFDAVV---ISSEVGCEKPDPRIFKAALGTSEHGFQLS 219 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~--~~~l~~~gl~~~fd~ii---~s~~~~~~KP~~~~~~~~~~~~~~~~~~~ 219 (231)
.|+++.++++.|+++|. ++|+||.+... ...+...++..+|+.+. +.+.....||+|++|+.+++++|++|+ +
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~-~ 221 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPA-R 221 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChh-h
Confidence 48899999999998887 78999977542 22334556666776554 344556789999999999999999988 9
Q ss_pred ceeeCCCc
Q 026879 220 CSVMPSSL 227 (231)
Q Consensus 220 ~~v~~d~~ 227 (231)
|++|+|++
T Consensus 222 ~lmIGD~~ 229 (279)
T TIGR01452 222 TLMVGDRL 229 (279)
T ss_pred EEEECCCh
Confidence 99999985
No 86
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.18 E-value=1.7e-11 Score=97.73 Aligned_cols=82 Identities=17% Similarity=0.106 Sum_probs=68.3
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCC---CCCCHHHHHHHHHhcCCCCCccc
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGC---EKPDPRIFKAALGTSEHGFQLSC 220 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~---~KP~~~~~~~~~~~~~~~~~~~~ 220 (231)
.|+++.+.++.|++.+.+++++||.+.. ....+...|+..+|+.+.++..... .||+|++|+.++++++++|+ +|
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~-~~ 199 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPE-EA 199 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChh-hE
Confidence 3678899999999989999999998765 3445567788888987776654433 69999999999999999988 99
Q ss_pred eeeCCCc
Q 026879 221 SVMPSSL 227 (231)
Q Consensus 221 ~v~~d~~ 227 (231)
++|+|+.
T Consensus 200 ~~vGD~~ 206 (257)
T TIGR01458 200 VMIGDDC 206 (257)
T ss_pred EEECCCc
Confidence 9999985
No 87
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.17 E-value=3.3e-09 Score=84.35 Aligned_cols=168 Identities=13% Similarity=0.021 Sum_probs=105.1
Q ss_pred EEEecCCccccccc-c--HHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhc-------cCCCcHHHHHHHHHHhc
Q 026879 53 VLLDAGGTLLQLAE-P--VEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLR-------YEGDGRPFWRLVVSEAT 122 (231)
Q Consensus 53 iiFD~DGTL~d~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 122 (231)
||=|+|-||..... . --.....+++.-. .. .+.+............+-... -.....+||.....-..
T Consensus 25 visDFD~Tlt~~~~~~g~~~~s~~~~~~~~~-~~-~~~~~~~~~~l~~~Y~PiE~d~~~~~~eK~~~m~eWw~k~~~l~~ 102 (277)
T TIGR01544 25 IISDFDYTLSRFSYEDGKRCPTCHGIFDNCK-LL-TDECRKKLLQLKEKYYPIEVDPVLTVEEKYPYMVEWWTKSHGLLV 102 (277)
T ss_pred EeeccCccceeeecCCCCCCcchHhHHhhCC-CC-CHHHHHHHHHHHhhccceecCCCCChHHhhhHHHHHHHHHHHHHh
Confidence 78899999976541 1 1112223333321 11 233444444444333322111 11122456655544443
Q ss_pred CCC-ChHHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEE------EecCc
Q 026879 123 GCT-NDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAV------VISSE 194 (231)
Q Consensus 123 ~~~-~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~i------i~s~~ 194 (231)
+.. ..+.++.+.+ ...+.+.||+.++|+.|+++|++++|+|++... +...++.+|+.+.+..+ +..+.
T Consensus 103 ~~~~~~e~i~~~v~----~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dG 178 (277)
T TIGR01544 103 QQAFPKAKIKEIVA----ESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDG 178 (277)
T ss_pred cCCCCHHHHHHHHh----hcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCC
Confidence 332 2233333322 234799999999999999999999999999877 79999999997777676 44444
Q ss_pred CCCCCCCH---------HHHHHHHHhcC--CCCCccceeeCCCc
Q 026879 195 VGCEKPDP---------RIFKAALGTSE--HGFQLSCSVMPSSL 227 (231)
Q Consensus 195 ~~~~KP~~---------~~~~~~~~~~~--~~~~~~~~v~~d~~ 227 (231)
+-..||.| .+++++.+.++ ..++ +|++++|+.
T Consensus 179 vltG~~~P~i~~~~K~~~v~~~~~~~~~~~~~~~-~vI~vGDs~ 221 (277)
T TIGR01544 179 VLKGFKGPLIHTFNKNHDVALRNTEYFNQLKDRS-NIILLGDSQ 221 (277)
T ss_pred eEeCCCCCcccccccHHHHHHHHHHHhCccCCcc-eEEEECcCh
Confidence 44568888 78888899888 6666 899999985
No 88
>PRK08238 hypothetical protein; Validated
Probab=99.11 E-value=1.1e-09 Score=94.03 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=63.7
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccce
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCS 221 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 221 (231)
.+.+||+.+.+++++++|++++|+||+++. ++..++++|+ ||.++++++....||++.. +.+.+.++. +.++
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~-~~l~~~l~~---~~~~ 143 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FDGVFASDGTTNLKGAAKA-AALVEAFGE---RGFD 143 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CCEEEeCCCccccCCchHH-HHHHHHhCc---cCee
Confidence 467899999999999999999999999887 6888899988 9999999988878777653 334455553 2578
Q ss_pred eeCCCc
Q 026879 222 VMPSSL 227 (231)
Q Consensus 222 v~~d~~ 227 (231)
+++|+.
T Consensus 144 yvGDS~ 149 (479)
T PRK08238 144 YAGNSA 149 (479)
T ss_pred EecCCH
Confidence 888875
No 89
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.07 E-value=7.7e-09 Score=84.77 Aligned_cols=85 Identities=19% Similarity=0.119 Sum_probs=66.2
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhc-C-------ccccccEEEecCc-----------------CC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDL-N-------VIDLFDAVVISSE-----------------VG 196 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~-g-------l~~~fd~ii~s~~-----------------~~ 196 (231)
+..+||+.++|+.|+++|++++|+||++.. +...++.+ | |.++||.|+++.. .+
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g 262 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVETG 262 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCCC
Confidence 567999999999999999999999999977 68888886 7 9999999998642 12
Q ss_pred CCCCCH------------HHHHHHHHhcCCCCCccceeeCCCce
Q 026879 197 CEKPDP------------RIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 197 ~~KP~~------------~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
..++.. .-.....+.+|+.++ ++++|+|++.
T Consensus 263 ~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~-~vlYvGD~i~ 305 (343)
T TIGR02244 263 SLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGK-EVLYFGDHIY 305 (343)
T ss_pred cccCCccccccCCCeEeCCCHHHHHHHHCCCCC-cEEEECCcch
Confidence 222222 123566677788877 9999999864
No 90
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.07 E-value=2.2e-09 Score=85.27 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=59.2
Q ss_pred CCcccCCCHHHHHHHHhHCCCeEEEEeCCchh----HHHHHHhcCcccc-ccEEEecCcCCCCCCCHHHHHHHHHhcCCC
Q 026879 141 EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR----LRKLLKDLNVIDL-FDAVVISSEVGCEKPDPRIFKAALGTSEHG 215 (231)
Q Consensus 141 ~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~----~~~~l~~~gl~~~-fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~ 215 (231)
....++||+.++|+.|+++|++++++||.... ....|+.+|+..+ ++.++..++ + +|.+.-++.+.+.+++
T Consensus 115 ~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~-~--~~K~~rr~~I~~~y~I- 190 (266)
T TIGR01533 115 AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKD-K--SSKESRRQKVQKDYEI- 190 (266)
T ss_pred CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCC-C--CCcHHHHHHHHhcCCE-
Confidence 34689999999999999999999999996632 3577889999764 466766542 2 4556777777775554
Q ss_pred CCccceeeCCCc
Q 026879 216 FQLSCSVMPSSL 227 (231)
Q Consensus 216 ~~~~~~v~~d~~ 227 (231)
+++|+|..
T Consensus 191 ----vl~vGD~~ 198 (266)
T TIGR01533 191 ----VLLFGDNL 198 (266)
T ss_pred ----EEEECCCH
Confidence 67788864
No 91
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=99.07 E-value=1e-09 Score=87.10 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcC
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEV 195 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~ 195 (231)
.|++.++|++|+++|++++|+||++++ +...++.+|+.++|+.++++++.
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i 200 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRK 200 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCc
Confidence 388999999999999999999998876 78899999999999999988753
No 92
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.05 E-value=3.6e-09 Score=82.31 Aligned_cols=117 Identities=11% Similarity=0.247 Sum_probs=74.2
Q ss_pred EEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCC-CChHHH
Q 026879 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC-TNDDYF 130 (231)
Q Consensus 52 ~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 130 (231)
+|+||||+||++.+.. ..+.+.++...-.+++...+.+ ..|. ++...++...... -..+.+
T Consensus 2 LvvfDFD~TIvd~dsd-----~~v~~~l~~~~~~~~l~~~~~~---~~wt----------~~m~~vl~~L~~~gvt~~~I 63 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSD-----DWVIELLPPEELPEELRESYPK---GGWT----------EYMDRVLQLLHEQGVTPEDI 63 (234)
T ss_pred EEEEeCCCCccCCccH-----HHHHHhcCCcccHHHHHHhccc---cchH----------HHHHHHHHHHHHcCCCHHHH
Confidence 5899999999998633 3344455444323444443321 1222 2223333332211 112222
Q ss_pred HHHHHHHHcCCCcccCCCHHHHHHHH--hHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEec
Q 026879 131 EEVYEYYAKGEAWHLPHGAYQSILLL--KDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVIS 192 (231)
Q Consensus 131 ~~~~~~~~~~~~~~~~pgv~~~L~~L--~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s 192 (231)
.... ..+++.||+.++++.+ ++.|+.++|+|+++.- +..+|++.|+.+.|+.|++-
T Consensus 64 ~~~l------~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TN 122 (234)
T PF06888_consen 64 RDAL------RSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTN 122 (234)
T ss_pred HHHH------HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeC
Confidence 2222 2269999999999999 4569999999999987 79999999999999887753
No 93
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.04 E-value=3.8e-09 Score=78.53 Aligned_cols=82 Identities=26% Similarity=0.444 Sum_probs=65.2
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCc---------------hh-HHHHHHhcCccccccEEEecC-----cCCCCCCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFD---------------TR-LRKLLKDLNVIDLFDAVVISS-----EVGCEKPD 201 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~---------------~~-~~~~l~~~gl~~~fd~ii~s~-----~~~~~KP~ 201 (231)
+.+.||+.+.|..|++.|++++++||.+ +. +...|+..|+ .||.++.+- ....+||.
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv--~id~i~~Cph~p~~~c~cRKP~ 107 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGV--KIDGILYCPHHPEDNCDCRKPK 107 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcccCCC
Confidence 4888999999999999999999999921 11 2334555565 478877653 24679999
Q ss_pred HHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 202 PRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
+.+++.++++++++++ .-++|+|..
T Consensus 108 ~gm~~~~~~~~~iD~~-~s~~VGD~~ 132 (181)
T COG0241 108 PGMLLSALKEYNIDLS-RSYVVGDRL 132 (181)
T ss_pred hHHHHHHHHHhCCCcc-ceEEecCcH
Confidence 9999999999999998 888889974
No 94
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.03 E-value=6.2e-10 Score=84.20 Aligned_cols=67 Identities=15% Similarity=0.273 Sum_probs=57.1
Q ss_pred HHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 151 QSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 151 ~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
..++.|+++|++++|+||.+.. +...++.+|+..+|+. .++.++.++++++++|++|+ +|++|+|+.
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g---------~~~k~~~l~~~~~~~gl~~~-ev~~VGDs~ 122 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQG---------QSNKLIAFSDLLEKLAIAPE-QVAYIGDDL 122 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecC---------CCcHHHHHHHHHHHhCCCHH-HEEEECCCH
Confidence 3677888899999999998766 6889999999877751 35668999999999999988 899999986
No 95
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.03 E-value=8.8e-09 Score=75.24 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=63.7
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchhH-HHH---HHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCc
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTRL-RKL---LKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQL 218 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~-~~~---l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~ 218 (231)
.++||++.+.|++.++.|++++|.|++.... .-. .+...+..+|++.+-.. +| .|-...-|.++++..|++|.
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDtt-iG-~KrE~~SY~kIa~~iGl~p~- 178 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTT-IG-KKRESQSYAKIAGDIGLPPA- 178 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeecc-cc-ccccchhHHHHHHhcCCCch-
Confidence 5899999999999999999999999988553 222 23345666666655542 22 56677899999999999999
Q ss_pred cceeeCCCc
Q 026879 219 SCSVMPSSL 227 (231)
Q Consensus 219 ~~~v~~d~~ 227 (231)
++++..|.+
T Consensus 179 eilFLSDn~ 187 (229)
T COG4229 179 EILFLSDNP 187 (229)
T ss_pred heEEecCCH
Confidence 888888864
No 96
>PTZ00445 p36-lilke protein; Provisional
Probab=99.02 E-value=8.3e-10 Score=83.23 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=67.2
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCch----------------hHHHHHHhcCccccccEEEecC-----------cCC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT----------------RLRKLLKDLNVIDLFDAVVISS-----------EVG 196 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~----------------~~~~~l~~~gl~~~fd~ii~s~-----------~~~ 196 (231)
.+-|+...++.+|++.|++++|+|=++. -+...|+..+-+-.++.+++-. .++
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~g 154 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLG 154 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhc
Confidence 4557788899999999999999996554 1356677665554455566433 247
Q ss_pred CCCCCHHH--H--HHHHHhcCCCCCccceeeCCCceee
Q 026879 197 CEKPDPRI--F--KAALGTSEHGFQLSCSVMPSSLFMI 230 (231)
Q Consensus 197 ~~KP~~~~--~--~~~~~~~~~~~~~~~~v~~d~~~~V 230 (231)
..||+|++ | ++++++.|+.|+ +|++|+|...+|
T Consensus 155 l~KPdp~iK~yHle~ll~~~gl~pe-E~LFIDD~~~NV 191 (219)
T PTZ00445 155 LDAPMPLDKSYHLKQVCSDFNVNPD-EILFIDDDMNNC 191 (219)
T ss_pred ccCCCccchHHHHHHHHHHcCCCHH-HeEeecCCHHHH
Confidence 88999999 9 999999999999 999999987665
No 97
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.00 E-value=2.5e-09 Score=78.90 Aligned_cols=81 Identities=21% Similarity=0.479 Sum_probs=57.1
Q ss_pred ccc-CCCHHHHHHHHhHCCCeEEEEeCC----c-----------hhHHHHHHhcCccccccEEEecCcCCCCCCCHHHHH
Q 026879 143 WHL-PHGAYQSILLLKDAGVKVAVVSNF----D-----------TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFK 206 (231)
Q Consensus 143 ~~~-~pgv~~~L~~L~~~g~~i~i~Sn~----~-----------~~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~ 206 (231)
+.+ +|++.+.|+.|.+.|+.|+|+||. . ..+..+++.+++. +...++......+||.+.|++
T Consensus 27 ~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip--~~~~~a~~~d~~RKP~~GM~~ 104 (159)
T PF08645_consen 27 WKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP--IQVYAAPHKDPCRKPNPGMWE 104 (159)
T ss_dssp GEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS---EEEEECGCSSTTSTTSSHHHH
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc--eEEEecCCCCCCCCCchhHHH
Confidence 344 468999999999999999999993 1 0124455666665 333444444478999999999
Q ss_pred HHHHhcCC----CCCccceeeCCC
Q 026879 207 AALGTSEH----GFQLSCSVMPSS 226 (231)
Q Consensus 207 ~~~~~~~~----~~~~~~~v~~d~ 226 (231)
.+++.++. +.+ ++++|+|.
T Consensus 105 ~~~~~~~~~~~id~~-~Sf~VGDa 127 (159)
T PF08645_consen 105 FALKDYNDGVEIDLA-NSFYVGDA 127 (159)
T ss_dssp HHCCCTSTT--S-CC-C-EEEESS
T ss_pred HHHHhcccccccccc-ceEEEecc
Confidence 99999975 545 88999985
No 98
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.99 E-value=3.7e-10 Score=83.45 Aligned_cols=84 Identities=25% Similarity=0.242 Sum_probs=57.4
Q ss_pred CCcccCCCHHHHHHHHhHCCCeEEEEeCCc-hh-HHHHHHhcCcc----------ccccEEEecCcCCCCCCCHHHHHHH
Q 026879 141 EAWHLPHGAYQSILLLKDAGVKVAVVSNFD-TR-LRKLLKDLNVI----------DLFDAVVISSEVGCEKPDPRIFKAA 208 (231)
Q Consensus 141 ~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~-~~-~~~~l~~~gl~----------~~fd~ii~s~~~~~~KP~~~~~~~~ 208 (231)
..+.+||++.++|+.|+++|++++++|-++ .+ +...|+.+++. ++|+..-.. .. .+..-|+.+
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~----~g-sK~~Hf~~i 116 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIY----PG-SKTTHFRRI 116 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEES----SS--HHHHHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhhee----cC-chHHHHHHH
Confidence 347999999999999999999999999433 34 69999999999 888773332 12 567789999
Q ss_pred HHhcCCCCCccceeeCCCceee
Q 026879 209 LGTSEHGFQLSCSVMPSSLFMI 230 (231)
Q Consensus 209 ~~~~~~~~~~~~~v~~d~~~~V 230 (231)
.++.|++.+ +.++++|+..++
T Consensus 117 ~~~tgI~y~-eMlFFDDe~~N~ 137 (169)
T PF12689_consen 117 HRKTGIPYE-EMLFFDDESRNI 137 (169)
T ss_dssp HHHH---GG-GEEEEES-HHHH
T ss_pred HHhcCCChh-HEEEecCchhcc
Confidence 999999988 899999986654
No 99
>PRK10444 UMP phosphatase; Provisional
Probab=98.96 E-value=7.9e-09 Score=81.81 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 195 VGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 195 ~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
....||+|++|+.++++++++++ +|++|+|++
T Consensus 170 ~~~gKP~~~~~~~~~~~~~~~~~-~~v~IGD~~ 201 (248)
T PRK10444 170 FYVGKPSPWIIRAALNKMQAHSE-ETVIVGDNL 201 (248)
T ss_pred cccCCCCHHHHHHHHHHcCCCcc-cEEEECCCc
Confidence 33569999999999999999988 999999986
No 100
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.95 E-value=6.7e-09 Score=82.31 Aligned_cols=49 Identities=29% Similarity=0.210 Sum_probs=30.5
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCch---h-HHHHHHh-cCccccccEEEec
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT---R-LRKLLKD-LNVIDLFDAVVIS 192 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~---~-~~~~l~~-~gl~~~fd~ii~s 192 (231)
.++||+.++|+.|+++|.++.++||.+. + +...|.. .+++...+.|++|
T Consensus 24 ~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS 77 (269)
T COG0647 24 EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTS 77 (269)
T ss_pred ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecH
Confidence 6678888888888888888888887542 2 3445555 4443334444444
No 101
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.90 E-value=1.9e-08 Score=77.70 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCcccCCCHHHHHH-HHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecC
Q 026879 130 FEEVYEYYAKGEAWHLPHGAYQSIL-LLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISS 193 (231)
Q Consensus 130 ~~~~~~~~~~~~~~~~~pgv~~~L~-~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~ 193 (231)
.+.+.+.|.. ...++||+.++|+ .++++|++++|+||+... +....+..++.. .+.++++.
T Consensus 82 ~~~f~~~~~~--~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~-~~~~i~t~ 144 (210)
T TIGR01545 82 EADFVAAFRD--KVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIH-RLNLIASQ 144 (210)
T ss_pred HHHHHHHHHH--hCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccc-cCcEEEEE
Confidence 3444444433 2368999999995 889899999999999887 577777766533 24455554
No 102
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.86 E-value=4.5e-09 Score=83.41 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=58.8
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCchhHH----HHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccc
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFDTRLR----KLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSC 220 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~----~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 220 (231)
.|+.+...+..|+ +|.+ .++||.+.... .....-.+...++...+.+.+...||+|++|+.+++.++++++ ++
T Consensus 122 ~y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~-~~ 198 (249)
T TIGR01457 122 DYEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTERE-ET 198 (249)
T ss_pred CHHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcc-cE
Confidence 4566677777775 4676 88899775421 1112233445566677777777889999999999999999988 89
Q ss_pred eeeCCCc
Q 026879 221 SVMPSSL 227 (231)
Q Consensus 221 ~v~~d~~ 227 (231)
++|+|+.
T Consensus 199 ~~VGD~~ 205 (249)
T TIGR01457 199 LMVGDNY 205 (249)
T ss_pred EEECCCc
Confidence 9999986
No 103
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.81 E-value=1.1e-08 Score=70.62 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=61.7
Q ss_pred CCcccCCCHHHHHHHHhHCCCeEEEEe-CCchhHHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhc------C
Q 026879 141 EAWHLPHGAYQSILLLKDAGVKVAVVS-NFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTS------E 213 (231)
Q Consensus 141 ~~~~~~pgv~~~L~~L~~~g~~i~i~S-n~~~~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~------~ 213 (231)
..++++|+++++|+.+++.|+-++.+| |-...+-..|..+++.+||+-++.- ....| -.|..++++.. .
T Consensus 38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~Vie--PhP~K--~~ML~~llr~i~~er~~~ 113 (164)
T COG4996 38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIE--PHPYK--FLMLSQLLREINTERNQK 113 (164)
T ss_pred eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEec--CCChh--HHHHHHHHHHHHHhhccc
Confidence 337899999999999999999999999 7666677889999999999988762 11122 12455555544 4
Q ss_pred CCCCccceeeCCCc
Q 026879 214 HGFQLSCSVMPSSL 227 (231)
Q Consensus 214 ~~~~~~~~v~~d~~ 227 (231)
+.|+ ++|+++|.-
T Consensus 114 ikP~-~Ivy~DDR~ 126 (164)
T COG4996 114 IKPS-EIVYLDDRR 126 (164)
T ss_pred cCcc-eEEEEeccc
Confidence 6778 788888864
No 104
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.77 E-value=2.9e-08 Score=67.49 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=40.2
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCch----hHHHHHHhcCccccccEEEecCc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT----RLRKLLKDLNVIDLFDAVVISSE 194 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~----~~~~~l~~~gl~~~fd~ii~s~~ 194 (231)
.++||+.++|+.|+++|.+++++||... +....|+.+|+.---+.+++|..
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~ 68 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGM 68 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHH
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHH
Confidence 7889999999999999999999998542 25778899999866688888754
No 105
>PLN02645 phosphoglycolate phosphatase
Probab=98.70 E-value=7.8e-08 Score=78.82 Aligned_cols=51 Identities=24% Similarity=0.271 Sum_probs=42.0
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCch----hHHHHHHhcCccccccEEEecCc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT----RLRKLLKDLNVIDLFDAVVISSE 194 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~----~~~~~l~~~gl~~~fd~ii~s~~ 194 (231)
.++||+.++|+.|+++|++++++||... .+...++.+|+...++.++++..
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~ 98 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSF 98 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHH
Confidence 5679999999999999999999998552 23556788999888888988753
No 106
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.65 E-value=2.8e-06 Score=63.06 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=70.2
Q ss_pred cccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCChhhhccCCCcHHHHHHHHHHhcCCCChH
Q 026879 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDD 128 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (231)
.-++|.||+|-||+..+ ....+++..|.. ++..+.-.+.++.. .+.++-+...+.-.. ..
T Consensus 15 ~~~aVcFDvDSTvi~eE-----gIdelA~~~G~~---~~Va~~T~rAMng~--------~~F~eaL~~Rl~llq--p~-- 74 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEE-----GIDELAAYCGVG---EAVAEVTRRAMNGE--------ADFQEALAARLSLLQ--PL-- 74 (227)
T ss_pred hcCeEEEecCcchhHHh-----hHHHHHHHhCch---HHHHHHHHHHhCCC--------CcHHHHHHHHHHHhc--cc--
Confidence 45899999999998654 445555555555 33333333333321 111222222221111 11
Q ss_pred HHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc
Q 026879 129 YFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (231)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~ 184 (231)
+.-.+.+....++++-||++++...|+++|..++++|++-.. +..+...+||.-
T Consensus 75 --~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 75 --QVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred --HHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 111222333345789999999999999999999999998877 578888888864
No 107
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.64 E-value=1.3e-07 Score=71.73 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=51.0
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcC--C------C-CCC----CHHHHHHH---H
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEV--G------C-EKP----DPRIFKAA---L 209 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~--~------~-~KP----~~~~~~~~---~ 209 (231)
|++.++|+.++++|++++|+|.+... +...++.+|+... .++++... + . ..+ +....+.+ .
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~ 169 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDD--NVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRD 169 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEG--GEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCce--EEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHh
Confidence 55559999999999999999998877 5888888888742 23332220 0 0 000 34455655 3
Q ss_pred HhcCCCCCccceeeCCCc
Q 026879 210 GTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 210 ~~~~~~~~~~~~v~~d~~ 227 (231)
.. +..+. .+++++|+.
T Consensus 170 ~~-~~~~~-~~~~iGDs~ 185 (192)
T PF12710_consen 170 EE-DIDPD-RVIAIGDSI 185 (192)
T ss_dssp HH-THTCC-EEEEEESSG
T ss_pred hc-CCCCC-eEEEEECCH
Confidence 33 55555 889999986
No 108
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.63 E-value=3.3e-07 Score=69.25 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=44.6
Q ss_pred cccCCCHHHHHHHHhHCC-CeEEEEeCCchh-HHHHHHhcCccccccEEEe
Q 026879 143 WHLPHGAYQSILLLKDAG-VKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVI 191 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g-~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~ 191 (231)
++..||+.++++.+++.| +.+.|+|.++.- +..+|+++|+.+.|..|++
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfT 133 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFT 133 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhc
Confidence 689999999999999998 599999998886 7999999999999987775
No 109
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.57 E-value=2.5e-08 Score=78.91 Aligned_cols=81 Identities=12% Similarity=0.057 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCCchhH-HHHHHhcCccccccEE--EecCcCCCCCCCHHHHHHHHHhcCCCCCcccee
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNFDTRL-RKLLKDLNVIDLFDAV--VISSEVGCEKPDPRIFKAALGTSEHGFQLSCSV 222 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~~~~~-~~~l~~~gl~~~fd~i--i~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 222 (231)
||++.++|+.|.++|+++ |+||.+... ...+...+...+|..+ ++.+.....||+|++|+.++++++..+.++|++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 688999999998889997 889987653 4456667777777654 566666689999999999999999876558999
Q ss_pred eCCCc
Q 026879 223 MPSSL 227 (231)
Q Consensus 223 ~~d~~ 227 (231)
|+|++
T Consensus 219 vGD~~ 223 (242)
T TIGR01459 219 VGDSF 223 (242)
T ss_pred ECCCc
Confidence 99984
No 110
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.55 E-value=4.5e-07 Score=66.90 Aligned_cols=74 Identities=24% Similarity=0.233 Sum_probs=48.9
Q ss_pred ccCCCHHHHHHHHhHCCC--eEEEEeCCc-------h-hHHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcC
Q 026879 144 HLPHGAYQSILLLKDAGV--KVAVVSNFD-------T-RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSE 213 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~--~i~i~Sn~~-------~-~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~ 213 (231)
.+.|.+.+.++++++.+. ++.|+||+. . ++...-+.+|+. .+.. ...|| ..+..+++.++
T Consensus 59 ~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp----vl~h----~~kKP--~~~~~i~~~~~ 128 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP----VLRH----RAKKP--GCFREILKYFK 128 (168)
T ss_pred cCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc----EEEe----CCCCC--ccHHHHHHHHh
Confidence 445666678888888855 599999962 2 356666777853 2222 25788 45666666664
Q ss_pred C-----CCCccceeeCCCce
Q 026879 214 H-----GFQLSCSVMPSSLF 228 (231)
Q Consensus 214 ~-----~~~~~~~v~~d~~~ 228 (231)
. .|+ +++||+|.++
T Consensus 129 ~~~~~~~p~-eiavIGDrl~ 147 (168)
T PF09419_consen 129 CQKVVTSPS-EIAVIGDRLF 147 (168)
T ss_pred hccCCCCch-hEEEEcchHH
Confidence 3 366 8999999763
No 111
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.47 E-value=1.6e-07 Score=69.60 Aligned_cols=81 Identities=5% Similarity=-0.005 Sum_probs=71.3
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc-cccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccc
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID-LFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSC 220 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~-~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 220 (231)
+..-||+.++|+.|++. +.++|.|++.+. +..+++.++... +|+.+++.++....+|. |.+.+..+|.+++ ++
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~-~v 115 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLS-KV 115 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChh-hE
Confidence 46789999999999988 999999999987 788999999875 89999999887777776 7888999998887 99
Q ss_pred eeeCCCce
Q 026879 221 SVMPSSLF 228 (231)
Q Consensus 221 ~v~~d~~~ 228 (231)
++|+|+..
T Consensus 116 IiVDD~~~ 123 (162)
T TIGR02251 116 IIIDNSPY 123 (162)
T ss_pred EEEeCChh
Confidence 99999864
No 112
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.41 E-value=1.6e-07 Score=67.11 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=55.9
Q ss_pred HHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 152 SILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 152 ~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
.++.|.+.|++++|+|..+.. ++...+.+|+..+|.++- -....|+.+++++++.++ +|.+++|+..
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~~---------dK~~a~~~L~~~~~l~~e-~~ayiGDD~~ 110 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGIS---------DKLAAFEELLKKLNLDPE-EVAYVGDDLV 110 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeechH---------hHHHHHHHHHHHhCCCHH-HhhhhcCccc
Confidence 578888999999999998877 688999999976554322 256799999999999999 9999999864
No 113
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.40 E-value=3.3e-06 Score=65.48 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=45.2
Q ss_pred CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh----HHHHHHhcCccccccEEEecCcCCCCCC
Q 026879 140 GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR----LRKLLKDLNVIDLFDAVVISSEVGCEKP 200 (231)
Q Consensus 140 ~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~----~~~~l~~~gl~~~fd~ii~s~~~~~~KP 200 (231)
....++.|++.++++.|+++|++++++||-+.. ....|...|+..+ +.++-.......|+
T Consensus 116 ~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~ 179 (229)
T TIGR01675 116 KGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLILRGLEDSNKT 179 (229)
T ss_pred cCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-CeeeecCCCCCCch
Confidence 344689999999999999999999999996642 2577888898764 77777543333443
No 114
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.36 E-value=2.2e-06 Score=64.32 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 197 CEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 197 ~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
..||+|.+|+.+++.+|++|+ +||||+|++
T Consensus 179 vGKP~~~fFe~al~~~gv~p~-~aVMIGDD~ 208 (262)
T KOG3040|consen 179 VGKPSPFFFESALQALGVDPE-EAVMIGDDL 208 (262)
T ss_pred ecCCCHHHHHHHHHhcCCChH-HheEEcccc
Confidence 579999999999999999999 999999986
No 115
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.28 E-value=1.2e-05 Score=63.54 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=42.2
Q ss_pred CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchh---H-HHHHHhcCccccccEEEecCc
Q 026879 140 GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR---L-RKLLKDLNVIDLFDAVVISSE 194 (231)
Q Consensus 140 ~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~---~-~~~l~~~gl~~~fd~ii~s~~ 194 (231)
....++.|++.++++.++++|++|+++||.+.. . ...|...|+..+ +.++-...
T Consensus 141 ~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~-~~LiLR~~ 198 (275)
T TIGR01680 141 KGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTW-EKLILKDP 198 (275)
T ss_pred cccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCc-ceeeecCC
Confidence 344689999999999999999999999996642 2 566888888754 66776543
No 116
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.18 E-value=4.3e-06 Score=67.31 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=33.1
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccc
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF 186 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~f 186 (231)
|++.++|+.|++.|++++++|+.+.. +...++.+|+..++
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~ 64 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPF 64 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCE
Confidence 44668899999999999999998765 78888999987654
No 117
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.16 E-value=5.8e-06 Score=64.69 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=37.9
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCch---hH-HHHHHhcCccccccEEEe
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT---RL-RKLLKDLNVIDLFDAVVI 191 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~---~~-~~~l~~~gl~~~fd~ii~ 191 (231)
.+++||+.++++.++++|+.|+++||.+. +. ..-|...|...+ +.++.
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~-~~l~l 165 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGW-DHLIL 165 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTB-SCGEE
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCcc-chhcc
Confidence 48999999999999999999999999543 23 667888897643 45443
No 118
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.13 E-value=9.5e-06 Score=65.13 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=28.9
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~ 184 (231)
..+.|++|+++|++++++|+.+.. +...++.+++..
T Consensus 25 ~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (270)
T PRK10513 25 VKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQ 61 (270)
T ss_pred HHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCC
Confidence 447889999999999999987754 677788888754
No 119
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.12 E-value=7.5e-06 Score=60.15 Aligned_cols=77 Identities=10% Similarity=0.002 Sum_probs=58.5
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc-ccc-cEEEecCcCCCCCCCHHHHHHHH-HhcCCCCCc
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI-DLF-DAVVISSEVGCEKPDPRIFKAAL-GTSEHGFQL 218 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~-~~f-d~ii~s~~~~~~KP~~~~~~~~~-~~~~~~~~~ 218 (231)
+.++||+.++|+.|++. ++++|+||+.+. +..+++.++.. .+| +.+++.++.+ . .+.+-+ ..++.+.+
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~--~----~~~KdL~~i~~~d~~- 128 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG--S----PHTKSLLRLFPADES- 128 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC--C----CccccHHHHcCCCcc-
Confidence 68999999999999966 999999999987 78899999988 588 6778877653 1 122234 33455555
Q ss_pred cceeeCCCc
Q 026879 219 SCSVMPSSL 227 (231)
Q Consensus 219 ~~~v~~d~~ 227 (231)
.+++++|+.
T Consensus 129 ~vvivDd~~ 137 (156)
T TIGR02250 129 MVVIIDDRE 137 (156)
T ss_pred cEEEEeCCH
Confidence 788888764
No 120
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.10 E-value=7.2e-06 Score=64.16 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=21.6
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
..+.|++|+++|++++++|+.+.. +...++.+++.
T Consensus 25 ~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 25 AVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred HHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 345666677777777777765543 45555666654
No 121
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.05 E-value=7.1e-06 Score=60.54 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=56.2
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCc-cccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccc
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV-IDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSC 220 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl-~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 220 (231)
+.+-||+.++|+.+.+. +.++|.|.+... +..+++.+.- ..+|+.+++.+.....+- .+.+-++.+|.+.. .+
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~---~~~KdL~~l~~~~~-~v 109 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDKG---SYIKDLSKLGRDLD-NV 109 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETT---EEE--GGGSSS-GG-GE
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhcccccccccccccccccc---ccccchHHHhhccc-cE
Confidence 57789999999999877 999999998876 6888888876 578999998876542221 11266777776555 88
Q ss_pred eeeCCCce
Q 026879 221 SVMPSSLF 228 (231)
Q Consensus 221 ~v~~d~~~ 228 (231)
++++|+..
T Consensus 110 vivDD~~~ 117 (159)
T PF03031_consen 110 VIVDDSPR 117 (159)
T ss_dssp EEEES-GG
T ss_pred EEEeCCHH
Confidence 88888764
No 122
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.04 E-value=5.4e-06 Score=63.16 Aligned_cols=42 Identities=17% Similarity=0.494 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcC---CCcccCCCHHHHHHHHhHCCCeEEEEeCC
Q 026879 128 DYFEEVYEYYAKG---EAWHLPHGAYQSILLLKDAGVKVAVVSNF 169 (231)
Q Consensus 128 ~~~~~~~~~~~~~---~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~ 169 (231)
+..+.+++.+... ...+++||+.++|++|.+.|+.++++|..
T Consensus 54 e~~~~~~~~~~~~~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar 98 (191)
T PF06941_consen 54 EFYEKLWRFYEEPGFFSNLPPIPGAVEALKKLRDKGHEIVIITAR 98 (191)
T ss_dssp THHHHHHHHHTSTTTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-
T ss_pred HHHHHHHHHHhChhhhcCCCccHHHHHHHHHHHHcCCcEEEEEec
Confidence 3344555555432 34789999999999999999778877754
No 123
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.99 E-value=1.8e-05 Score=63.47 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=15.5
Q ss_pred ccccEEEEecCCcccccc
Q 026879 48 KAYDAVLLDAGGTLLQLA 65 (231)
Q Consensus 48 ~~~k~iiFD~DGTL~d~~ 65 (231)
|++|+|+||+||||++..
T Consensus 1 M~~kli~~DlDGTLl~~~ 18 (272)
T PRK10530 1 MTYRVIALDLDGTLLTPK 18 (272)
T ss_pred CCccEEEEeCCCceECCC
Confidence 468999999999999764
No 124
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.87 E-value=4.6e-05 Score=61.01 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=31.4
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCch-hHHHHHHhcCccc
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDT-RLRKLLKDLNVID 184 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~-~~~~~l~~~gl~~ 184 (231)
+...++|++++++|++++++|+.+. .+...++.+++..
T Consensus 23 ~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 23 PETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 3455788899999999999998775 4788899999875
No 125
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.86 E-value=3.7e-05 Score=59.63 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=23.0
Q ss_pred CHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 148 GAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 148 gv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
...+.|++|+++|++++++|+.+.. +...++.+++.
T Consensus 22 ~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 22 RAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 3446677777777777777765543 55556666654
No 126
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.84 E-value=4.3e-05 Score=61.22 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=30.5
Q ss_pred HHHHHHHHhHCCCeEEEEeCCch-hHHHHHHhcCcccc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDT-RLRKLLKDLNVIDL 185 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~-~~~~~l~~~gl~~~ 185 (231)
+.+.|++|+++|++++++|+... ++..+.+.+++..+
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p 60 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHP 60 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCe
Confidence 45789999999999999998775 47888888888753
No 127
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.83 E-value=4.2e-05 Score=61.53 Aligned_cols=36 Identities=8% Similarity=0.244 Sum_probs=24.0
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~ 184 (231)
..+.|++|+++|++++++|+.+.. +...++.+++..
T Consensus 24 ~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 24 TLSTLARLRERDITLTFATGRHVLEMQHILGALSLDA 60 (272)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCC
Confidence 345677777777777777776543 566667776653
No 128
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=97.82 E-value=4.5e-05 Score=60.09 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=38.6
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCc-h--h-HHHHHHh-cCccccccEEEecC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFD-T--R-LRKLLKD-LNVIDLFDAVVISS 193 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~-~--~-~~~~l~~-~gl~~~fd~ii~s~ 193 (231)
.++|++.+.|+.++++|+++.++||.. + . ....|.. +|+.--.+.+++|.
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~ 68 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSG 68 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHH
Confidence 457899999999999999999999854 2 2 4555666 78776677788774
No 129
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.80 E-value=0.00015 Score=57.37 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=43.4
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecC
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISS 193 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~ 193 (231)
..|.+.+.|.+|++.|..+++=|.|+++ +..-++.+++.++||.+++.+
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGG 192 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCC
Confidence 4477788999999999999999998887 799999999999999999764
No 130
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=97.79 E-value=0.00014 Score=62.20 Aligned_cols=52 Identities=21% Similarity=0.230 Sum_probs=36.4
Q ss_pred CCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHh---c------CccccccEEEec
Q 026879 141 EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKD---L------NVIDLFDAVVIS 192 (231)
Q Consensus 141 ~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~---~------gl~~~fd~ii~s 192 (231)
..+...|.+..+|++|+++|.++.++||++-. ....++. - .|.++||.||+.
T Consensus 180 kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~ 241 (448)
T PF05761_consen 180 KYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVD 241 (448)
T ss_dssp CCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES
T ss_pred HHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEc
Confidence 33567889999999999999999999998865 3444443 3 688999999974
No 131
>PRK10976 putative hydrolase; Provisional
Probab=97.76 E-value=6.4e-05 Score=60.21 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=20.8
Q ss_pred HHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 150 YQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 150 ~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
.+.|++|+++|++++++|+.... +...++.+++.
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 25 KETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 35666667777777777765533 45556666654
No 132
>PTZ00174 phosphomannomutase; Provisional
Probab=97.75 E-value=9.8e-05 Score=58.57 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=21.2
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchh-HHHHHH
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLK 178 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~ 178 (231)
..++|++++++|+.++++|+.+.. +...+.
T Consensus 27 ~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 27 MKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 446788888889999999986643 444443
No 133
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=97.75 E-value=5.9e-05 Score=60.01 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCCchhHH--HHHHhcC---ccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccc
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNFDTRLR--KLLKDLN---VIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSC 220 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~--~~l~~~g---l~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 220 (231)
|+....+++.|++-++ ++++||.+.... ....-.| +...+......+..-..||++.+++.++++.+++|+ ++
T Consensus 167 y~KL~kA~~yLqnP~c-lflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~ps-Rt 244 (306)
T KOG2882|consen 167 YPKLMKALNYLQNPGC-LFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNIDPS-RT 244 (306)
T ss_pred HHHHHHHHHHhCCCCc-EEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCCcc-eE
Confidence 3445556777776643 456777554211 0011111 111122233334455789999999999999999999 99
Q ss_pred eeeCCCc
Q 026879 221 SVMPSSL 227 (231)
Q Consensus 221 ~v~~d~~ 227 (231)
+||+|++
T Consensus 245 ~mvGDRL 251 (306)
T KOG2882|consen 245 CMVGDRL 251 (306)
T ss_pred EEEcccc
Confidence 9999986
No 134
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.73 E-value=8.2e-05 Score=58.17 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=31.1
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~ 184 (231)
|+..++|++|+++|++++++|+.+.. +...++.+|+..
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEP 56 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 34568999999999999999997754 777888999754
No 135
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.72 E-value=0.00013 Score=58.63 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=29.0
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
..+.|++|+++|++++++|+.+.. +...++.+|+.
T Consensus 29 ~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 29 AAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 446889999999999999987754 78888888875
No 136
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=97.66 E-value=0.0016 Score=49.87 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=58.4
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchhHHHHH-HhcC-------ccccccEEEecCcCCCCCCCHHHHHHHHHhcCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLL-KDLN-------VIDLFDAVVISSEVGCEKPDPRIFKAALGTSEH 214 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l-~~~g-------l~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~ 214 (231)
.+.|+++...++.++..|++++|.|.+...+...+ .+.+ +..|||.-++ .|-....|.++.+..|.
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt~iG------~K~e~~sy~~I~~~Ig~ 195 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDTTIG------LKVESQSYKKIGHLIGK 195 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhcccc------ceehhHHHHHHHHHhCC
Confidence 48999999999999999999999999887654333 3221 4456666554 56677899999999999
Q ss_pred CCCccceeeCC
Q 026879 215 GFQLSCSVMPS 225 (231)
Q Consensus 215 ~~~~~~~v~~d 225 (231)
++. ++++.-|
T Consensus 196 s~~-eiLfLTd 205 (254)
T KOG2630|consen 196 SPR-EILFLTD 205 (254)
T ss_pred Chh-heEEecc
Confidence 987 6766555
No 137
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.64 E-value=0.00046 Score=48.65 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=35.7
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCch----------------hHHHHHHhcCccccccEEEecC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT----------------RLRKLLKDLNVIDLFDAVVISS 193 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~----------------~~~~~l~~~gl~~~fd~ii~s~ 193 (231)
.+.+++.+.|+.|++.|+.++++|+.+. ....+|+..++. +|.++..-
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip--Yd~l~~~k 87 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP--YDEIYVGK 87 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC--CceEEeCC
Confidence 5667788999999999999999997542 226677777775 56666543
No 138
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.62 E-value=0.00037 Score=51.29 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=28.9
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-H---HHHHHh
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-L---RKLLKD 179 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~---~~~l~~ 179 (231)
...|++.+++++++++|++++++|+.+.. . ...++.
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 34589999999999999999999997644 3 356666
No 139
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.0031 Score=46.75 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=34.8
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLN 181 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~g 181 (231)
+.+.||.+++++..++++++++|+|+|... +...++..+
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 689999999999999999999999998876 677777765
No 140
>PLN02645 phosphoglycolate phosphatase
Probab=97.54 E-value=2.6e-05 Score=64.03 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=57.5
Q ss_pred HHHHHHhHCCCeEEEEeCCchhH--HHHHHhcCccccccEEEecCcCCC---CCCCHHHHHHHHHhcCCCCCccceeeCC
Q 026879 151 QSILLLKDAGVKVAVVSNFDTRL--RKLLKDLNVIDLFDAVVISSEVGC---EKPDPRIFKAALGTSEHGFQLSCSVMPS 225 (231)
Q Consensus 151 ~~L~~L~~~g~~i~i~Sn~~~~~--~~~l~~~gl~~~fd~ii~s~~~~~---~KP~~~~~~~~~~~~~~~~~~~~~v~~d 225 (231)
.....|+.++-.++|+||.+... ...+...|+..+|+.+.++..... .||+|.+|+.++++++++++ ++++|+|
T Consensus 177 ~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~-~~~~VGD 255 (311)
T PLN02645 177 YATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKS-QICMVGD 255 (311)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcc-cEEEEcC
Confidence 34555554334689999977642 334456788888888887765433 59999999999999999988 8999999
Q ss_pred Cc
Q 026879 226 SL 227 (231)
Q Consensus 226 ~~ 227 (231)
+.
T Consensus 256 ~~ 257 (311)
T PLN02645 256 RL 257 (311)
T ss_pred Cc
Confidence 86
No 141
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.49 E-value=0.00022 Score=63.30 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=55.1
Q ss_pred ccCCCHHHHHHHHhHCC-CeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccce
Q 026879 144 HLPHGAYQSILLLKDAG-VKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCS 221 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g-~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 221 (231)
.++||+.++|+.|+++| ++++++||.+.. +...++++|+.++|..+. +++++++.++. +..+. +|+
T Consensus 384 ~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~~-------p~~K~~~v~~l----~~~~~-~v~ 451 (556)
T TIGR01525 384 QLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAELL-------PEDKLAIVKEL----QEEGG-VVA 451 (556)
T ss_pred cchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccCC-------HHHHHHHHHHH----HHcCC-EEE
Confidence 68999999999999999 999999998876 689999999988776531 12223344443 33444 899
Q ss_pred eeCCCc
Q 026879 222 VMPSSL 227 (231)
Q Consensus 222 v~~d~~ 227 (231)
+++|..
T Consensus 452 ~vGDg~ 457 (556)
T TIGR01525 452 MVGDGI 457 (556)
T ss_pred EEECCh
Confidence 999975
No 142
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.45 E-value=0.00032 Score=55.88 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=25.2
Q ss_pred CHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 148 GAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 148 gv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
...+.|++|+++|++++++|+.+.. +...++.+++.
T Consensus 20 ~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 20 STKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 3446777888888888888876644 56667777665
No 143
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.44 E-value=0.00014 Score=60.07 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.1
Q ss_pred EEEEecCCcccccccc
Q 026879 52 AVLLDAGGTLLQLAEP 67 (231)
Q Consensus 52 ~iiFD~DGTL~d~~~~ 67 (231)
+++||+||||++....
T Consensus 2 ~~ifD~DGvL~~g~~~ 17 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKP 17 (321)
T ss_pred EEEEeCcCceECCccc
Confidence 5899999999987533
No 144
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.42 E-value=0.00032 Score=54.57 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=29.6
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
..++|+.|+++|++++++||.+.. +...++.+++.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 447888999999999999998865 68888888876
No 145
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.41 E-value=0.0005 Score=54.01 Aligned_cols=37 Identities=19% Similarity=0.428 Sum_probs=31.0
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
|...++|+.|+++|++++++|+.+.. +...+..+++.
T Consensus 18 ~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 18 PETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred HHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 45668899999999999999997754 78888888876
No 146
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.40 E-value=0.0036 Score=49.77 Aligned_cols=81 Identities=14% Similarity=0.164 Sum_probs=58.9
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh---H-HHHHHhcCcc---ccc----------------------cEEEecCc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR---L-RKLLKDLNVI---DLF----------------------DAVVISSE 194 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~---~-~~~l~~~gl~---~~f----------------------d~ii~s~~ 194 (231)
..-+++.++++.|+++|+++..+|..... . .+.|+.+|++ ..| ++|+.+.
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~- 159 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG- 159 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC-
Confidence 56789999999999999999999985543 2 5567777765 100 1122222
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCccceeeCCCcee
Q 026879 195 VGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSLFM 229 (231)
Q Consensus 195 ~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 229 (231)
.-+.-+++...+..+|..|+ .+++|+|+.-.
T Consensus 160 ---~~~KG~~L~~fL~~~~~~pk-~IIfIDD~~~n 190 (252)
T PF11019_consen 160 ---GQDKGEVLKYFLDKINQSPK-KIIFIDDNKEN 190 (252)
T ss_pred ---CCccHHHHHHHHHHcCCCCC-eEEEEeCCHHH
Confidence 23445899999999999999 99999987543
No 147
>PLN02887 hydrolase family protein
Probab=97.39 E-value=0.00036 Score=61.68 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
..+.|++|+++|+.++++|+.... +...++.+++.
T Consensus 330 t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 330 NAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 347889999999999999987754 66777777764
No 148
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.37 E-value=0.00034 Score=54.43 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=11.3
Q ss_pred EEEecCCcccccc
Q 026879 53 VLLDAGGTLLQLA 65 (231)
Q Consensus 53 iiFD~DGTL~d~~ 65 (231)
|+||+||||++..
T Consensus 1 i~~DlDGTLl~~~ 13 (225)
T TIGR01482 1 IASDIDGTLTDPN 13 (225)
T ss_pred CeEeccCccCCCC
Confidence 5899999999865
No 149
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.35 E-value=0.00031 Score=62.01 Aligned_cols=72 Identities=11% Similarity=0.220 Sum_probs=54.8
Q ss_pred ccCCCHHHHHHHHhHCCC-eEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccce
Q 026879 144 HLPHGAYQSILLLKDAGV-KVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCS 221 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~-~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 221 (231)
+++||+.++|+.|+++|+ +++++||.+.. ....++.+|++++|..+. +.++.+ ++++++..+. +++
T Consensus 362 ~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~-------p~~K~~----~i~~l~~~~~-~v~ 429 (536)
T TIGR01512 362 EPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELL-------PEDKLE----IVKELREKYG-PVA 429 (536)
T ss_pred cchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccC-------cHHHHH----HHHHHHhcCC-EEE
Confidence 689999999999999999 99999998776 699999999988775432 122333 3444443334 899
Q ss_pred eeCCCc
Q 026879 222 VMPSSL 227 (231)
Q Consensus 222 v~~d~~ 227 (231)
+++|..
T Consensus 430 ~vGDg~ 435 (536)
T TIGR01512 430 MVGDGI 435 (536)
T ss_pred EEeCCH
Confidence 999975
No 150
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.33 E-value=0.00067 Score=54.06 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=29.6
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~ 184 (231)
..++|+.|+++|++++++|+.+.. +...++.+|+.+
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLED 57 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCC
Confidence 457889999999999999987755 788888888753
No 151
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.30 E-value=0.00062 Score=60.64 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=27.0
Q ss_pred HHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc
Q 026879 150 YQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (231)
Q Consensus 150 ~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~ 184 (231)
.+.|++|+++|++++++|+.... +...++.+++..
T Consensus 439 ~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~~ 474 (694)
T PRK14502 439 LDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIKD 474 (694)
T ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 46788889999999999986654 677777777653
No 152
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.28 E-value=0.0036 Score=48.51 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=37.1
Q ss_pred CcccCCCHHHHHHHHhHCCCeEEEEeCCchh--H---HHHHHhcCcccccc
Q 026879 142 AWHLPHGAYQSILLLKDAGVKVAVVSNFDTR--L---RKLLKDLNVIDLFD 187 (231)
Q Consensus 142 ~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~--~---~~~l~~~gl~~~fd 187 (231)
...+.||+.++|+..-++|..|+-+||.+.+ . ..-|...|+...-+
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~ 170 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLE 170 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccc
Confidence 3589999999999999999999999996543 2 45677788876554
No 153
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=97.08 E-value=0.0004 Score=44.32 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHhcCCCCCccceeeCCC
Q 026879 197 CEKPDPRIFKAALGTSEHGFQLSCSVMPSS 226 (231)
Q Consensus 197 ~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~ 226 (231)
..||+|.+|+.++++++++|+ +|++|+|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~-~~~~VGD~ 30 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPS-RCVMVGDS 30 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGG-GEEEEESS
T ss_pred CCCCcHHHHHHHHHHcCCCHH-HEEEEcCC
Confidence 379999999999999999999 99999998
No 154
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.04 E-value=0.0037 Score=45.66 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=29.4
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCch---h-HHHHHHhc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT---R-LRKLLKDL 180 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~---~-~~~~l~~~ 180 (231)
...||+.++++.++++||++.-+|..+. . .+.+|+..
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 4558999999999999999999998652 2 36677665
No 155
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.02 E-value=0.001 Score=59.05 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=52.5
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCcccee
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSV 222 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 222 (231)
+++||+.++|+.|+++|++++++||.+.. +...++.+|++ +| ++-. +++++++.++..+ +++ +|++
T Consensus 405 ~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~-~~-----~~~~--p~~K~~~v~~l~~----~~~-~v~~ 471 (562)
T TIGR01511 405 QLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-VR-----AEVL--PDDKAALIKELQE----KGR-VVAM 471 (562)
T ss_pred cccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc-EE-----ccCC--hHHHHHHHHHHHH----cCC-EEEE
Confidence 68999999999999999999999998876 68999999995 22 2221 2333444444433 344 8999
Q ss_pred eCCCc
Q 026879 223 MPSSL 227 (231)
Q Consensus 223 ~~d~~ 227 (231)
++|.+
T Consensus 472 VGDg~ 476 (562)
T TIGR01511 472 VGDGI 476 (562)
T ss_pred EeCCC
Confidence 99975
No 156
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.90 E-value=0.003 Score=53.61 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=53.6
Q ss_pred HHHHHHHHhHCCCeEEEEe-CCchhHHHHHHhcCccccccEEEecCcC----CCCCCCHHHHHHHHHhcCCCCCccceee
Q 026879 149 AYQSILLLKDAGVKVAVVS-NFDTRLRKLLKDLNVIDLFDAVVISSEV----GCEKPDPRIFKAALGTSEHGFQLSCSVM 223 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~S-n~~~~~~~~l~~~gl~~~fd~ii~s~~~----~~~KP~~~~~~~~~~~~~~~~~~~~~v~ 223 (231)
.-+.+..|+++|+-++|+| |..+.+.......+ |-++.-++. -..-|..+-.+++++++|+..+ ..|++
T Consensus 260 fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp-----~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~d-SmvFi 333 (574)
T COG3882 260 FQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHP-----DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLD-SMVFI 333 (574)
T ss_pred HHHHHHHHHhccEEEEEecCCchhhHHHHHhhCC-----CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCcc-ceEEe
Confidence 3468889999999999999 65566766666544 222222221 1356889999999999999877 88888
Q ss_pred CCCce
Q 026879 224 PSSLF 228 (231)
Q Consensus 224 ~d~~~ 228 (231)
+|+..
T Consensus 334 DD~p~ 338 (574)
T COG3882 334 DDNPA 338 (574)
T ss_pred cCCHH
Confidence 88753
No 157
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=96.73 E-value=0.004 Score=58.33 Aligned_cols=83 Identities=8% Similarity=0.116 Sum_probs=62.1
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCC----------------CCCHHHHH
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCE----------------KPDPRIFK 206 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~----------------KP~~~~~~ 206 (231)
++.||+.++++.|++.|+++.++|+.+.. +....+..|+...++.++++.+.... .+.|+--.
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~ 607 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKM 607 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHH
Confidence 57999999999999999999999997766 68899999998877777666544322 24555555
Q ss_pred HHHHhcCCCCCccceeeCCCc
Q 026879 207 AALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~d~~ 227 (231)
.+++.+..... .+.+++|.+
T Consensus 608 ~iv~~lq~~g~-~v~mvGDGv 627 (884)
T TIGR01522 608 KIVKALQKRGD-VVAMTGDGV 627 (884)
T ss_pred HHHHHHHHCCC-EEEEECCCc
Confidence 55555544333 788888865
No 158
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.67 E-value=0.0044 Score=47.49 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=11.4
Q ss_pred EEEEecCCcccccc
Q 026879 52 AVLLDAGGTLLQLA 65 (231)
Q Consensus 52 ~iiFD~DGTL~d~~ 65 (231)
.|+||+||||++..
T Consensus 1 li~~D~DgTL~~~~ 14 (204)
T TIGR01484 1 LLFFDLDGTLLDPN 14 (204)
T ss_pred CEEEeCcCCCcCCC
Confidence 37899999999753
No 159
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.66 E-value=0.0039 Score=58.07 Aligned_cols=72 Identities=11% Similarity=0.197 Sum_probs=55.5
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCcccee
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSV 222 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 222 (231)
+++||+.+.|+.|++.|++++++|+.+.. ....++.+|+.++|..+. |+--..++++++..++ .+++
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~~-----------p~~K~~~i~~l~~~~~-~v~~ 717 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVL-----------PDGKAEAIKRLQSQGR-QVAM 717 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCCC-----------HHHHHHHHHHHhhcCC-EEEE
Confidence 57899999999999999999999997766 688999999976554321 2223456666666655 8999
Q ss_pred eCCCc
Q 026879 223 MPSSL 227 (231)
Q Consensus 223 ~~d~~ 227 (231)
++|.+
T Consensus 718 vGDg~ 722 (834)
T PRK10671 718 VGDGI 722 (834)
T ss_pred EeCCH
Confidence 99975
No 160
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.54 E-value=0.0097 Score=48.09 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=40.8
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCc-h---hHHHHHHhcCccccccEEEecC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFD-T---RLRKLLKDLNVIDLFDAVVISS 193 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~-~---~~~~~l~~~gl~~~fd~ii~s~ 193 (231)
.++||+.++|++|+++|++++++||.. . .....++.+|+....+.+++|.
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~ 71 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSA 71 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHH
Confidence 688999999999999999999999844 2 2356788899876677888864
No 161
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.54 E-value=0.0061 Score=48.90 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=27.2
Q ss_pred ccCCCHHHHHHHHhH-CCCeEEEEeCCchh-HHHHHHhcC
Q 026879 144 HLPHGAYQSILLLKD-AGVKVAVVSNFDTR-LRKLLKDLN 181 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~-~g~~i~i~Sn~~~~-~~~~l~~~g 181 (231)
.+.|.+.+.|+.|++ .|+.++|+|+.+.. +...+..++
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~ 75 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYR 75 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCccc
Confidence 344667788888887 68899999987755 565665544
No 162
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.27 E-value=0.014 Score=44.44 Aligned_cols=38 Identities=8% Similarity=0.061 Sum_probs=32.7
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl 182 (231)
..-|++.++|+.+.+. |.|+|.|.+... +..+++.+++
T Consensus 45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l~~ 83 (195)
T TIGR02245 45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTELGV 83 (195)
T ss_pred EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHhcc
Confidence 4569999999999997 999999998766 7888888765
No 163
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.16 E-value=0.019 Score=47.53 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=48.5
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-------------HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHH
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-------------LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALG 210 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-------------~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~ 210 (231)
.++|.+..=|..|.+.|+.++|.||.... +..++..+++. |........-..+||...+++...+
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~vP--i~~~~A~~~~~yRKP~tGMwe~~~~ 181 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGVP--IQLLAAIIKGKYRKPSTGMWEFLKR 181 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCCc--eEEeeeccCCcccCcchhHHHHHHH
Confidence 67788889999999999999999984211 23334444443 3333333334589999999999998
Q ss_pred hcCC
Q 026879 211 TSEH 214 (231)
Q Consensus 211 ~~~~ 214 (231)
.++-
T Consensus 182 ~~nd 185 (422)
T KOG2134|consen 182 LEND 185 (422)
T ss_pred Hhhc
Confidence 8763
No 164
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=96.10 E-value=0.0041 Score=48.99 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=43.6
Q ss_pred CCCeEEEEeCCchhH--HHHHHhcCccccccE---EEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 159 AGVKVAVVSNFDTRL--RKLLKDLNVIDLFDA---VVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 159 ~g~~i~i~Sn~~~~~--~~~l~~~gl~~~fd~---ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
+|-...++||.+... ..-....+...+|+. +.+.......||+|++|+.+++++++.+.+.|++|+|+.
T Consensus 143 ~~~~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~ 216 (236)
T TIGR01460 143 EGDVPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNL 216 (236)
T ss_pred CCCCeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCc
Confidence 443567778965321 111222344444333 333333346799999999999999998885559999986
No 165
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=96.00 E-value=0.016 Score=46.01 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=41.7
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCc---hh-HHHHHHhcCccccccEEEecC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFD---TR-LRKLLKDLNVIDLFDAVVISS 193 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~---~~-~~~~l~~~gl~~~fd~ii~s~ 193 (231)
.++|++.++|++|+++|++++++||.. .+ +...++.+|+....|.++++.
T Consensus 17 ~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~ 70 (249)
T TIGR01457 17 ERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTAS 70 (249)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHH
Confidence 567899999999999999999999833 23 577889999987778888875
No 166
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.95 E-value=0.013 Score=46.78 Aligned_cols=50 Identities=26% Similarity=0.221 Sum_probs=40.0
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCch----hHHHHHHhcCccccccEEEecC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT----RLRKLLKDLNVIDLFDAVVISS 193 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~----~~~~~l~~~gl~~~fd~ii~s~ 193 (231)
.++|++.++|++|+++|++++++||... .+...++.+|+.--.+.+++|.
T Consensus 21 ~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~ 74 (257)
T TIGR01458 21 VAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPA 74 (257)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHH
Confidence 4889999999999999999999998442 2577788888864456677763
No 167
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=95.92 E-value=0.13 Score=44.64 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=24.3
Q ss_pred HHHHHhHCCCeEEEEeCCchh-HHHHHHh-cCcc
Q 026879 152 SILLLKDAGVKVAVVSNFDTR-LRKLLKD-LNVI 183 (231)
Q Consensus 152 ~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~-~gl~ 183 (231)
.++.+++.| +.+|+|..++- ++..++. +|.+
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D 133 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRAD 133 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCc
Confidence 566777788 99999988877 6888877 7754
No 168
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=95.85 E-value=0.087 Score=46.08 Aligned_cols=35 Identities=9% Similarity=0.228 Sum_probs=23.9
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHh-cCcc
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKD-LNVI 183 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~-~gl~ 183 (231)
+.|++.+ .++++|.. +|+|.+.+. ++..++. +|++
T Consensus 111 l~~~a~~---~~~~~g~~-vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 111 VHPETWR---VFNSFGKR-YIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred cCHHHHH---HHHhCCCE-EEEECCcHHHHHHHHHHcCCCC
Confidence 5565554 44567755 999988877 6877765 7865
No 169
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=95.80 E-value=0.016 Score=45.45 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=19.2
Q ss_pred HHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 152 SILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 152 ~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
.++ ++++|++++++|+.+.. +...+..+++.
T Consensus 23 ~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 23 LLR-GSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred HHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 344 45667777777776543 56666666654
No 170
>PLN02580 trehalose-phosphatase
Probab=95.65 E-value=0.025 Score=47.61 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=28.3
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHh
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKD 179 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~ 179 (231)
.+.|++.++|+.|.+. .+++|+|+.+.. +...+..
T Consensus 141 ~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~~ 176 (384)
T PLN02580 141 LMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVGL 176 (384)
T ss_pred cCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhCC
Confidence 5668899999999998 799999998765 6666544
No 171
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.61 E-value=0.016 Score=53.21 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=50.6
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCcccee
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSV 222 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 222 (231)
++.||+.+.++.|++.|++++++|+.+.. .....+.+|+..++ +..+..|++ ++++++ .+. .+++
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~~------~~~p~~K~~------~v~~l~-~~~-~v~m 633 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFRA------GLLPEDKVK------AVTELN-QHA-PLAM 633 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCeec------CCCHHHHHH------HHHHHh-cCC-CEEE
Confidence 68999999999999999999999997766 69999999996322 222223333 333333 223 7889
Q ss_pred eCCCc
Q 026879 223 MPSSL 227 (231)
Q Consensus 223 ~~d~~ 227 (231)
++|.+
T Consensus 634 vGDgi 638 (741)
T PRK11033 634 VGDGI 638 (741)
T ss_pred EECCH
Confidence 99875
No 172
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=95.57 E-value=0.029 Score=44.44 Aligned_cols=35 Identities=6% Similarity=0.009 Sum_probs=23.7
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
..+++++++++|++++++|+.+.. +..+++.+++.
T Consensus 26 ~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 26 LNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCC
Confidence 446777777788888888876643 56666666654
No 173
>PLN02423 phosphomannomutase
Probab=95.39 E-value=0.013 Score=46.46 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=18.1
Q ss_pred cccEEE-EecCCccccccccHHHHHHHHH
Q 026879 49 AYDAVL-LDAGGTLLQLAEPVEETYASIA 76 (231)
Q Consensus 49 ~~k~ii-FD~DGTL~d~~~~~~~~~~~~~ 76 (231)
++++|+ ||+||||++..........+++
T Consensus 5 ~~~~i~~~D~DGTLl~~~~~i~~~~~~ai 33 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRKEATPEMLEFM 33 (245)
T ss_pred ccceEEEEeccCCCcCCCCcCCHHHHHHH
Confidence 456666 9999999987754433333333
No 174
>PLN02151 trehalose-phosphatase
Probab=95.14 E-value=0.047 Score=45.42 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=26.6
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHH
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLK 178 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~ 178 (231)
.+.|++.++|+.|.+. ++++|+|+.+.. +...+.
T Consensus 120 ~~~~~~~~aL~~La~~-~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 120 FMSKKMRNTVRKLAKC-FPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cCCHHHHHHHHHHhcC-CCEEEEECCCHHHHHHHcC
Confidence 5668888999999954 899999997755 555554
No 175
>PLN03017 trehalose-phosphatase
Probab=94.88 E-value=0.068 Score=44.64 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=24.4
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHH
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKL 176 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~ 176 (231)
.+.|++.+.|++|+ +|++++|+|+.+.. +...
T Consensus 133 ~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~ 165 (366)
T PLN03017 133 FMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNF 165 (366)
T ss_pred cCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHh
Confidence 45577888999999 67999999987754 5544
No 176
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.80 E-value=0.1 Score=40.10 Aligned_cols=35 Identities=40% Similarity=0.397 Sum_probs=26.2
Q ss_pred HHHHHHHHhHCCCeEEEEeCCch-hHHHHHHhcCcc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDT-RLRKLLKDLNVI 183 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~-~~~~~l~~~gl~ 183 (231)
+.+.+.+|++.|+++..+|+... ++...-+.+|+.
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 33678888999999999998775 466666677665
No 177
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=94.77 E-value=0.057 Score=42.69 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCCCCccceeeCCCc
Q 026879 203 RIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
...+++++.++..+. .+++++|+.
T Consensus 170 ~a~~~~~~~~~~~~~-~~i~iGD~~ 193 (244)
T TIGR00685 170 EIVKRLLWHQPGSGI-SPVYLGDDI 193 (244)
T ss_pred HHHHHHHHhcccCCC-ceEEEcCCC
Confidence 566777777776655 667777764
No 178
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=94.67 E-value=0.075 Score=48.92 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=27.2
Q ss_pred cCCCHHHHHHHHhHC-CCeEEEEeCCchh-HHHHHHhcC
Q 026879 145 LPHGAYQSILLLKDA-GVKVAVVSNFDTR-LRKLLKDLN 181 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~-g~~i~i~Sn~~~~-~~~~l~~~g 181 (231)
+-+++.+.|+.|.+. |..++|+|+.+.. +...+...+
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~ 553 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLP 553 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 446677889999984 8999999987755 566665544
No 179
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.035 Score=45.46 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=36.4
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCchh-HH---HHHHhcCccccccEEEe
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFDTR-LR---KLLKDLNVIDLFDAVVI 191 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~---~~l~~~gl~~~fd~ii~ 191 (231)
--|....+|+.|+++|.+++++||++-. +. ..+-.-.|.++||.||.
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIv 291 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIV 291 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEE
Confidence 3456788999999999999999999865 43 33334467889998886
No 180
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=93.82 E-value=0.13 Score=41.12 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=26.4
Q ss_pred ccCCCHHHHHHHHhHC-CCeEEEEeCCchh-HHHHHH
Q 026879 144 HLPHGAYQSILLLKDA-GVKVAVVSNFDTR-LRKLLK 178 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~-g~~i~i~Sn~~~~-~~~~l~ 178 (231)
.+.+++.++|+.|.++ +..++|+|.-+.. +..++.
T Consensus 40 ~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 40 VPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 6778899999999988 3349999986644 555555
No 181
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=93.60 E-value=0.16 Score=47.50 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=22.7
Q ss_pred cCCCHHHHHHHH-hHCCCeEEEEeCCchh-HHHHHH
Q 026879 145 LPHGAYQSILLL-KDAGVKVAVVSNFDTR-LRKLLK 178 (231)
Q Consensus 145 ~~pgv~~~L~~L-~~~g~~i~i~Sn~~~~-~~~~l~ 178 (231)
+-|++.++|++| ++.|..++|+|+.+.. +...+.
T Consensus 617 p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~ 652 (854)
T PLN02205 617 PSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFS 652 (854)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhC
Confidence 335667788887 5557888888886654 555553
No 182
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=93.59 E-value=0.46 Score=33.51 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=55.2
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCch-hHHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccce
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT-RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCS 221 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~-~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 221 (231)
.++++.+.+.++.|++. +.++|.|+-.. .+...++..|+. .+.+.... +++.=.++++.++- |.+.|+
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~--~~rv~a~a-------~~e~K~~ii~eLkk-~~~k~v 97 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIP--VERVFAGA-------DPEMKAKIIRELKK-RYEKVV 97 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCc--eeeeeccc-------CHHHHHHHHHHhcC-CCcEEE
Confidence 58999999999999999 99999998444 368888888875 34444422 56677888888875 444788
Q ss_pred eeCCC
Q 026879 222 VMPSS 226 (231)
Q Consensus 222 v~~d~ 226 (231)
++++-
T Consensus 98 mVGnG 102 (152)
T COG4087 98 MVGNG 102 (152)
T ss_pred EecCC
Confidence 88764
No 183
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=93.57 E-value=0.41 Score=33.45 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=52.0
Q ss_pred CcccCCCHHHHHHHHhHCCCeEEEEeCCch-h-HHHHHHhcCcccc---------ccEEEecCcCCCCCCCHHHHHHHHH
Q 026879 142 AWHLPHGAYQSILLLKDAGVKVAVVSNFDT-R-LRKLLKDLNVIDL---------FDAVVISSEVGCEKPDPRIFKAALG 210 (231)
Q Consensus 142 ~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~-~-~~~~l~~~gl~~~---------fd~ii~s~~~~~~KP~~~~~~~~~~ 210 (231)
.+.+|+++...|..|++.|+.++++|++.. + +...|+.+.+..- |+.+-..+- ....-|...-+
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~g-----sklghfke~~n 116 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGDG-----SKLGHFKEFTN 116 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecCc-----ccchhHHHHhh
Confidence 368999999999999999999999999774 3 5788888765432 222222221 12334555666
Q ss_pred hcCCCCCccceeeCCC
Q 026879 211 TSEHGFQLSCSVMPSS 226 (231)
Q Consensus 211 ~~~~~~~~~~~v~~d~ 226 (231)
..|.... +.++++|+
T Consensus 117 ~s~~~~k-~~~~fdDe 131 (144)
T KOG4549|consen 117 NSNSIEK-NKQVFDDE 131 (144)
T ss_pred ccCcchh-ceeeeccc
Confidence 6666555 44555554
No 184
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=93.55 E-value=0.32 Score=39.44 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=45.4
Q ss_pred CCcccCCCHHHHHHHHhHCC-CeEEEEeCCchhHHHHHHhcCccccccEEEecCcCC-------CCCCCH-HHHHHHHHh
Q 026879 141 EAWHLPHGAYQSILLLKDAG-VKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVG-------CEKPDP-RIFKAALGT 211 (231)
Q Consensus 141 ~~~~~~pgv~~~L~~L~~~g-~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~-------~~KP~~-~~~~~~~~~ 211 (231)
.+..+||...++++.+++.| ++++|+||+..+ .+++.+. .+|.++.|=+.. --+|.. ..++++++-
T Consensus 89 GEPTLy~~L~elI~~~k~~g~~~tflvTNgslp--dv~~~L~---~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~ 163 (296)
T COG0731 89 GEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLP--DVLEELK---LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEG 163 (296)
T ss_pred CCcccccCHHHHHHHHHhcCCceEEEEeCCChH--HHHHHhc---cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHH
Confidence 44689999999999999999 799999999863 3333333 356666553322 224532 456666665
Q ss_pred cC
Q 026879 212 SE 213 (231)
Q Consensus 212 ~~ 213 (231)
+.
T Consensus 164 L~ 165 (296)
T COG0731 164 LE 165 (296)
T ss_pred HH
Confidence 53
No 185
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.41 E-value=0.49 Score=40.47 Aligned_cols=84 Identities=17% Similarity=0.094 Sum_probs=69.6
Q ss_pred ccCC--CHHHHHHHHhHCCCeEEEEeCC--chh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCc
Q 026879 144 HLPH--GAYQSILLLKDAGVKVAVVSNF--DTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQL 218 (231)
Q Consensus 144 ~~~p--gv~~~L~~L~~~g~~i~i~Sn~--~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~ 218 (231)
.+|| ...++.+.+.+.|.++.++|.. +.. ++..|...|.+-.--.++.|.+....|-....|..++...+++|.
T Consensus 97 vLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~- 175 (635)
T COG5610 97 VLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPK- 175 (635)
T ss_pred EeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChh-
Confidence 4455 4567899999999999999984 345 588999999875555688999999999999999999999999998
Q ss_pred cceeeCCCce
Q 026879 219 SCSVMPSSLF 228 (231)
Q Consensus 219 ~~~v~~d~~~ 228 (231)
....++|..+
T Consensus 176 ~w~H~GDN~~ 185 (635)
T COG5610 176 KWIHCGDNWV 185 (635)
T ss_pred heEEecCchh
Confidence 7888888754
No 186
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=93.36 E-value=0.98 Score=35.48 Aligned_cols=61 Identities=15% Similarity=0.018 Sum_probs=41.8
Q ss_pred CeEEEEeCCc-hhHHHHHHhcCccccc--cEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCC
Q 026879 161 VKVAVVSNFD-TRLRKLLKDLNVIDLF--DAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSS 226 (231)
Q Consensus 161 ~~i~i~Sn~~-~~~~~~l~~~gl~~~f--d~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~ 226 (231)
.-=++||++. .....+.=-++++.+| +.|+++..+|+ ...|+++.+++|.+.. ..++|+|-
T Consensus 176 ~vNvLVTs~qLVPaLaKcLLy~L~~~f~ieNIYSa~kvGK----~~cFe~I~~Rfg~p~~-~f~~IGDG 239 (274)
T TIGR01658 176 CINVLVTSGQLIPSLAKCLLFRLDTIFRIENVYSSIKVGK----LQCFKWIKERFGHPKV-RFCAIGDG 239 (274)
T ss_pred eeEEEEEcCccHHHHHHHHHhccCCccccccccchhhcch----HHHHHHHHHHhCCCCc-eEEEeCCC
Confidence 3446677755 3444455557888877 56888887763 5699999999997433 56667763
No 187
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=92.01 E-value=0.28 Score=46.42 Aligned_cols=41 Identities=10% Similarity=0.217 Sum_probs=35.7
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~ 184 (231)
++.|++.+.++.|++.|+++.++|+.+.. .....+..|+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~ 578 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFS 578 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCC
Confidence 57999999999999999999999986655 688889999853
No 188
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=91.75 E-value=0.42 Score=45.03 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=30.2
Q ss_pred ccCCCHHHHHHHHhHC-CCeEEEEeCCchh-HHHHHHhcC
Q 026879 144 HLPHGAYQSILLLKDA-GVKVAVVSNFDTR-LRKLLKDLN 181 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~-g~~i~i~Sn~~~~-~~~~l~~~g 181 (231)
.+.|++.++|+.|.+. +..++|+|+.+.+ +...+...+
T Consensus 622 ~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~ 661 (934)
T PLN03064 622 RLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFD 661 (934)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 5778899999999886 6899999998765 677665543
No 189
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=91.67 E-value=0.47 Score=43.21 Aligned_cols=71 Identities=10% Similarity=0.126 Sum_probs=50.5
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCC-HHHHHHHHHhcCCCCCccce
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPD-PRIFKAALGTSEHGFQLSCS 221 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~-~~~~~~~~~~~~~~~~~~~~ 221 (231)
++-||+.+.+++|++.|+++.++|+.+.. +....+.+|++++| . ..+|. +.-+-+.+++.|. .+.
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~----a-----~~~PedK~~~v~~lq~~g~----~Va 512 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFI----A-----EATPEDKIALIRQEQAEGK----LVA 512 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEE----c-----CCCHHHHHHHHHHHHHcCC----eEE
Confidence 57899999999999999999999987766 68899999986533 2 23443 2233333443332 577
Q ss_pred eeCCCc
Q 026879 222 VMPSSL 227 (231)
Q Consensus 222 v~~d~~ 227 (231)
+++|.+
T Consensus 513 mvGDG~ 518 (675)
T TIGR01497 513 MTGDGT 518 (675)
T ss_pred EECCCc
Confidence 888865
No 190
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=91.66 E-value=0.41 Score=39.01 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=19.8
Q ss_pred ccCCCHHHHHHHHhHC----CCeEEEEeCC
Q 026879 144 HLPHGAYQSILLLKDA----GVKVAVVSNF 169 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~----g~~i~i~Sn~ 169 (231)
.+.|++.++|+.|.++ .++...+||+
T Consensus 51 ~~i~~~~~Alr~L~~~~g~lkIP~vfLTNG 80 (389)
T KOG1618|consen 51 RPIPGALKALRRLVDNQGQLKIPFVFLTNG 80 (389)
T ss_pred CCCcchHHHHHHHHhcCCCeeccEEEEeCC
Confidence 5667777888888776 6788888885
No 191
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=91.59 E-value=0.29 Score=45.58 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=28.6
Q ss_pred ccCCCHHHHHHHHhHC-CCeEEEEeCCchh-HHHHHHh
Q 026879 144 HLPHGAYQSILLLKDA-GVKVAVVSNFDTR-LRKLLKD 179 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~-g~~i~i~Sn~~~~-~~~~l~~ 179 (231)
.+.|++.++|+.|.+. +..++|+|+.+.+ +...+..
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~ 569 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGE 569 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCC
Confidence 5668889999999876 6899999997765 6766654
No 192
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=91.49 E-value=0.44 Score=43.60 Aligned_cols=43 Identities=26% Similarity=0.374 Sum_probs=37.9
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF 186 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~f 186 (231)
++-|++.+.+++|++.|+++.++|+-++. .+.+.+.+|+++++
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~ 580 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVR 580 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhhe
Confidence 57899999999999999999999986666 69999999996654
No 193
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=91.19 E-value=0.39 Score=38.33 Aligned_cols=80 Identities=6% Similarity=0.042 Sum_probs=48.6
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCch-----hH-HHHHHhcCccc---cccEEEecCcCCCCCCCHHHHHHHHHhcCC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT-----RL-RKLLKDLNVID---LFDAVVISSEVGCEKPDPRIFKAALGTSEH 214 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~-----~~-~~~l~~~gl~~---~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~ 214 (231)
..++++.+++..++..+..+.++++... .. ....+.+++.. .++.+-. -..+.. ++..++++++.+|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei-~~~~~~--K~~~l~~l~~~~gi 213 (272)
T PRK10530 137 PTFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDI-ARKGNS--KGKRLTQWVEAQGW 213 (272)
T ss_pred cceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEE-ecCCCC--hHHHHHHHHHHcCC
Confidence 3456777888888777767777776431 22 33334445431 1111100 011223 45689999999999
Q ss_pred CCCccceeeCCCc
Q 026879 215 GFQLSCSVMPSSL 227 (231)
Q Consensus 215 ~~~~~~~v~~d~~ 227 (231)
+++ ++++|+|+.
T Consensus 214 ~~~-e~i~~GD~~ 225 (272)
T PRK10530 214 SMK-NVVAFGDNF 225 (272)
T ss_pred CHH-HeEEeCCCh
Confidence 988 899999975
No 194
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=90.98 E-value=0.68 Score=33.05 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=23.6
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNF 169 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~ 169 (231)
+.+.|++..++..|-+. +.++|+|.+
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaa 92 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAA 92 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEec
Confidence 47889999999999998 999999975
No 195
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=90.67 E-value=0.3 Score=38.34 Aligned_cols=29 Identities=21% Similarity=0.109 Sum_probs=18.6
Q ss_pred ccCCCHHHHHHHHhHC-CCeEEEEeCCchh
Q 026879 144 HLPHGAYQSILLLKDA-GVKVAVVSNFDTR 172 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~-g~~i~i~Sn~~~~ 172 (231)
.+.|++.++|+.|.+. +..++|+|+.+..
T Consensus 19 ~~~~~~~~~L~~La~~~~~~v~IvSGR~~~ 48 (235)
T PF02358_consen 19 VPPPELRELLRALAADPNNTVAIVSGRSLD 48 (235)
T ss_dssp ---HHHHHHHHHHHHHSE--EEEE-SS-HH
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEEeCCHH
Confidence 5668888999999987 3469999997754
No 196
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=90.65 E-value=0.55 Score=42.06 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=41.4
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc-ccc-cEEEecCcCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI-DLF-DAVVISSEVG 196 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~-~~f-d~ii~s~~~~ 196 (231)
+++-|++.++|+.+.+. |.++|+|-+.+. +..+++-+.-. .|| |.|++.++-+
T Consensus 200 vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~ 255 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESP 255 (635)
T ss_pred EEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCC
Confidence 57899999999999998 999999998876 56666665433 456 5688877743
No 197
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=89.97 E-value=1.5 Score=31.82 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.8
Q ss_pred cccEEEEecCCccccc
Q 026879 49 AYDAVLLDAGGTLLQL 64 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~ 64 (231)
.+|+|+||-|+++.-.
T Consensus 42 ~ikavVlDKDNcit~P 57 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAP 57 (190)
T ss_pred CceEEEEcCCCeeeCC
Confidence 6899999999999643
No 198
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=89.90 E-value=1 Score=41.18 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=49.8
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCC-HHHHHHHHHhcCCCCCccce
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPD-PRIFKAALGTSEHGFQLSCS 221 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~-~~~~~~~~~~~~~~~~~~~~ 221 (231)
++-||+.+.+++|++.|+++.++|+-+.. ...+.+.+|++++ ++ ..+|. +.-+-+.+++.|. .+.
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v----~A-----~~~PedK~~iV~~lQ~~G~----~Va 511 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDF----LA-----EATPEDKLALIRQEQAEGR----LVA 511 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEE----Ec-----cCCHHHHHHHHHHHHHcCC----eEE
Confidence 46799999999999999999999986655 6889999999653 22 23332 3334444454442 466
Q ss_pred eeCCCc
Q 026879 222 VMPSSL 227 (231)
Q Consensus 222 v~~d~~ 227 (231)
|++|-+
T Consensus 512 MtGDGv 517 (679)
T PRK01122 512 MTGDGT 517 (679)
T ss_pred EECCCc
Confidence 777754
No 199
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=88.88 E-value=1.6 Score=39.88 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=50.0
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCC-HHHHHHHHHhcCCCCCccce
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPD-PRIFKAALGTSEHGFQLSCS 221 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~-~~~~~~~~~~~~~~~~~~~~ 221 (231)
++-||+.+.+++|++.|+++.++|+-+.. +..+.+.+|++++| . ..+|. +.-+-+.+++.|. .+.
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~----A-----~~~PedK~~iV~~lQ~~G~----~Va 507 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFV----A-----ECKPEDKINVIREEQAKGH----IVA 507 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEE----c-----CCCHHHHHHHHHHHHhCCC----EEE
Confidence 57899999999999999999999986655 68899999997533 2 22332 2233444444442 566
Q ss_pred eeCCCc
Q 026879 222 VMPSSL 227 (231)
Q Consensus 222 v~~d~~ 227 (231)
|++|-+
T Consensus 508 MtGDGv 513 (673)
T PRK14010 508 MTGDGT 513 (673)
T ss_pred EECCCh
Confidence 778754
No 200
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=87.61 E-value=1.1 Score=36.15 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=32.6
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCch---h-HHHHHHhcCcc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT---R-LRKLLKDLNVI 183 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~---~-~~~~l~~~gl~ 183 (231)
.++||+.+.++.|++.|..+.++||... + ...+.+.+|+.
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 8899999999999999999999998442 2 35566777765
No 201
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=86.65 E-value=2.1 Score=33.82 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.7
Q ss_pred CCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCc
Q 026879 141 EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (231)
Q Consensus 141 ~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl 182 (231)
..+.+-+|+.++++.|+++++|+.|+|.|-.+ +...|+..+.
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~ 129 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGV 129 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT-
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCC
Confidence 44789999999999999999999999999887 5888888764
No 202
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=85.90 E-value=3.9 Score=33.57 Aligned_cols=31 Identities=26% Similarity=0.153 Sum_probs=27.4
Q ss_pred cccCCCHHHHHHHHhHCC-CeEEEEeCCchhH
Q 026879 143 WHLPHGAYQSILLLKDAG-VKVAVVSNFDTRL 173 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g-~~i~i~Sn~~~~~ 173 (231)
.+++|||..+++.|.+.| .+++-+||++-..
T Consensus 195 r~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~ 226 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGDAPVFYVSNSPWQL 226 (373)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEEecCChhHh
Confidence 589999999999999997 8999999987553
No 203
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=85.77 E-value=4.2 Score=38.02 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=50.7
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCcccee
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSV 222 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 222 (231)
++-||+...+..|++.|++++++|+-+.. ++...+..| +|.+++ +-.+..| .+.++.+.++-+ ...|
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG----i~~V~a-ev~P~~K--~~~Ik~lq~~~~-----~VaM 790 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVG----IDNVYA-EVLPEQK--AEKIKEIQKNGG-----PVAM 790 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhC----cceEEe-ccCchhh--HHHHHHHHhcCC-----cEEE
Confidence 57899999999999999999999986665 688899999 455555 3222222 345555555432 4566
Q ss_pred eCCCc
Q 026879 223 MPSSL 227 (231)
Q Consensus 223 ~~d~~ 227 (231)
++|-+
T Consensus 791 VGDGI 795 (951)
T KOG0207|consen 791 VGDGI 795 (951)
T ss_pred EeCCC
Confidence 66643
No 204
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=85.45 E-value=3.2 Score=34.32 Aligned_cols=29 Identities=17% Similarity=-0.040 Sum_probs=26.1
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCch
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT 171 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~ 171 (231)
+.++|.+.++++.+++.|+.+.|.|||..
T Consensus 141 PlL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 141 PTLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred ccchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 45789999999999999999999999864
No 205
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=84.94 E-value=3 Score=35.27 Aligned_cols=84 Identities=13% Similarity=0.024 Sum_probs=54.0
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HH---HHHHhcCccccccEEEecC---------------cCCC-------
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LR---KLLKDLNVIDLFDAVVISS---------------EVGC------- 197 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~---~~l~~~gl~~~fd~ii~s~---------------~~~~------- 197 (231)
...+..+.+|..+++.|.++.++||++-. .. ..+-..++..+||.++... +.+.
T Consensus 198 ~~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~ 277 (424)
T KOG2469|consen 198 VYDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGD 277 (424)
T ss_pred eecCccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccc
Confidence 34555666999999999999999997744 22 2222257889999887752 0011
Q ss_pred --------CCCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 198 --------EKPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 198 --------~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
.+++...-..+...+++... ++++++|+++
T Consensus 278 ~~~p~e~~~~ySggs~~~~~~~l~~~g~-diLy~gdHi~ 315 (424)
T KOG2469|consen 278 NTGPLEQGGVYSGGSLKTVETSMKVKGK-DILYGGDHIW 315 (424)
T ss_pred cCCcchhcccCCcchHHHHHHHhccccc-ceeeccccee
Confidence 12233455556666666554 7788888875
No 206
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=84.69 E-value=1.9 Score=40.07 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=36.3
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~ 184 (231)
++-|++.+.++.|++.|+++.++|+-+.. ...+.+..|+.+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 57899999999999999999999986665 688999999964
No 207
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=84.61 E-value=0.96 Score=38.50 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=28.9
Q ss_pred ccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 026879 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAF 96 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (231)
.+.||+|+||||..++ +|..++.-.|..++..-+.+.|-...
T Consensus 375 ~kiVVsDiDGTITkSD-----~~Ghv~~miGkdwth~gVAkLYtdI~ 416 (580)
T COG5083 375 KKIVVSDIDGTITKSD-----ALGHVKQMIGKDWTHNGVAKLYTDID 416 (580)
T ss_pred CcEEEEecCCcEEehh-----hHHHHHHHhccchhhcchhhhhhhhc
Confidence 5789999999998775 66666666666655554555554443
No 208
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.30 E-value=1.7 Score=34.41 Aligned_cols=40 Identities=10% Similarity=0.054 Sum_probs=32.0
Q ss_pred CCcccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhc
Q 026879 141 EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDL 180 (231)
Q Consensus 141 ~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~ 180 (231)
..+.+-.|+.+++..|+++++|+.|+|.+-.. ++..+...
T Consensus 135 s~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~ 175 (298)
T KOG3128|consen 135 SNIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQK 175 (298)
T ss_pred hhHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHH
Confidence 33678899999999999999999999998766 45555443
No 209
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=84.15 E-value=0.99 Score=37.28 Aligned_cols=32 Identities=9% Similarity=-0.072 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHhc--------CCC----CCccceeeCCCc
Q 026879 196 GCEKPDPRIFKAALGTS--------EHG----FQLSCSVMPSSL 227 (231)
Q Consensus 196 ~~~KP~~~~~~~~~~~~--------~~~----~~~~~~v~~d~~ 227 (231)
...||++.+|+.+++.+ +.+ +.++++||+|+.
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~ 273 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNP 273 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCCh
Confidence 45899999999999887 443 324899999986
No 210
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=81.19 E-value=3.5 Score=39.15 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=39.0
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE 194 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~ 194 (231)
++-|++.+.++.|++.|+++.++|+-+.. ...+.+.+|+.. +.++++.+
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~--~~v~~G~e 599 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDA--GEVLIGSD 599 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCc--cCceeHHH
Confidence 46789999999999999999999986655 688899999952 34444443
No 211
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=80.93 E-value=5.1 Score=38.32 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=35.6
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~ 184 (231)
++-|++.+.++.|++.|+++.++|+-+.. +..+.+..|+..
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~ 620 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILT 620 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCC
Confidence 57789999999999999999999986655 688889999863
No 212
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=80.11 E-value=5.1 Score=37.96 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=35.2
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
++-|++.+.+++|++.|+++.++|+-+.. +..+.+..|+.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 46789999999999999999999986655 68889999996
No 213
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=80.11 E-value=4.2 Score=38.66 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=35.3
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
++-|++.++++.|++.|+++.++|+-+.. +..+.+.+|+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLE 590 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 57789999999999999999999986655 68889999995
No 214
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=79.67 E-value=12 Score=28.14 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=29.0
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCch---h-H-HHHHHhcCccccccEEEecC
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDT---R-L-RKLLKDLNVIDLFDAVVISS 193 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~---~-~-~~~l~~~gl~~~fd~ii~s~ 193 (231)
+-+++++.--.++|-.|+.+|+... + + ....+.+.|......++..+
T Consensus 117 evA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gd 168 (237)
T COG3700 117 EVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGD 168 (237)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccC
Confidence 3456677777778999999998432 2 3 44445577755444445443
No 215
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=77.07 E-value=8.4 Score=37.36 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=35.7
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
++-|++.++++.|++.|+++.++|+-... ...+.+..|+.
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGII 686 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 67899999999999999999999986665 68888999985
No 216
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=76.96 E-value=5.1 Score=31.07 Aligned_cols=44 Identities=27% Similarity=0.313 Sum_probs=29.4
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecC
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISS 193 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~ 193 (231)
|.++|++|++. +.++|+|+++-. +...+....+.+.||.++..+
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~en 45 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFPEN 45 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHHSTTTHHHH-SEEEEGG
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHHcccchHhhCCeeecCC
Confidence 56899999987 999999999844 544443333455688776543
No 217
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=76.95 E-value=2.1 Score=33.96 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=18.9
Q ss_pred cEEEEecCCccccccccHHHHHHHHHH
Q 026879 51 DAVLLDAGGTLLQLAEPVEETYASIAR 77 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~~~~~~~~~~~ 77 (231)
..++.|+||||++........+.+.+.
T Consensus 3 ~ll~sDlD~Tl~~~~~~~~~~l~~~l~ 29 (247)
T PF05116_consen 3 RLLASDLDGTLIDGDDEALARLEELLE 29 (247)
T ss_dssp EEEEEETBTTTBHCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcCCCHHHHHHHHHHHH
Confidence 578999999999544444555555555
No 218
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=76.67 E-value=1.6 Score=31.52 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=13.3
Q ss_pred cEEEEecCCcccccc
Q 026879 51 DAVLLDAGGTLLQLA 65 (231)
Q Consensus 51 k~iiFD~DGTL~d~~ 65 (231)
..+++|+||||+++.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 569999999999985
No 219
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=76.09 E-value=1.6 Score=32.11 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=13.2
Q ss_pred cEEEEecCCcccccc
Q 026879 51 DAVLLDAGGTLLQLA 65 (231)
Q Consensus 51 k~iiFD~DGTL~d~~ 65 (231)
+.+++|+|+||+.+.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 469999999999885
No 220
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=76.03 E-value=2.7 Score=32.08 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=19.2
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHH
Q 026879 51 DAVLLDAGGTLLQLAEPVEETYASIARK 78 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~~~~~~~~~~~~ 78 (231)
-.++||+||||.........-+.+.+..
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~ 39 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFLQK 39 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHHHH
Confidence 4699999999988765554444444443
No 221
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=73.46 E-value=6.9 Score=29.01 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=20.5
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR 172 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~ 172 (231)
..-.++...|..++++ .+++-+|.....
T Consensus 72 l~~q~v~~~L~~~~e~-~~L~~itar~~d 99 (194)
T COG5663 72 LLAQLVKQVLPSLKEE-HRLIYITARKAD 99 (194)
T ss_pred HHHHHHHHHhHHHHhh-ceeeeeehhhHH
Confidence 4456678889999988 788888875443
No 222
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=71.95 E-value=5.3 Score=35.92 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=40.1
Q ss_pred ccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhCCCh
Q 026879 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWP 101 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (231)
-|.||=|+|||+..++ ++.+++..+|.+++..-+.+.|.......++
T Consensus 530 ~kIVISDIDGTITKSD-----vLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk 576 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSD-----VLGHVLPMIGKDWTHTGVAKLYTKIKENGYK 576 (738)
T ss_pred CcEEEecCCCceEhhh-----hhhhhhhhhcCcchhhhHHHHHHHHHhCCee
Confidence 4779999999998875 8899999999999888888888888776664
No 223
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=71.92 E-value=14 Score=28.35 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=33.1
Q ss_pred HHHHHHhcCcc----ccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 173 LRKLLKDLNVI----DLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 173 ~~~~l~~~gl~----~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
+...+...++. .+|..+... +..|+. ..+.+++.+|++++ +++.++|+.
T Consensus 153 ~~~~l~~~~~~~~~~~~~~ei~~~---~~~Kg~--al~~l~~~lgi~~~-~vi~~GD~~ 205 (221)
T TIGR02463 153 FTALLADLGLAIVQGNRFSHVLGA---SSSKGK--AANWLKATYNQPDV-KTLGLGDGP 205 (221)
T ss_pred HHHHHHHcCCeEEecCCeeEEecC---CCCHHH--HHHHHHHHhCCCCC-cEEEECCCH
Confidence 45566666654 334334432 334544 67999999999988 899999975
No 224
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=70.65 E-value=2.7 Score=30.76 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=14.7
Q ss_pred ccEEEEecCCcccccccc
Q 026879 50 YDAVLLDAGGTLLQLAEP 67 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~ 67 (231)
-..+++|+|.||+++...
T Consensus 6 kl~LVLDLDeTLihs~~~ 23 (156)
T TIGR02250 6 KLHLVLDLDQTLIHTTKD 23 (156)
T ss_pred ceEEEEeCCCCccccccc
Confidence 357999999999998643
No 225
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=70.58 E-value=18 Score=31.92 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=34.0
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl 182 (231)
++.|++.+.++.|++.|+++.++|..+.. .....+.+|+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi 386 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI 386 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc
Confidence 68899999999999999999999986665 6777788886
No 226
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=68.86 E-value=14 Score=31.27 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=15.0
Q ss_pred cccEEEEecCCcccccc
Q 026879 49 AYDAVLLDAGGTLLQLA 65 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~ 65 (231)
..+.|.||=|+||++..
T Consensus 146 ~L~LvTFDgDvTLY~DG 162 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDG 162 (408)
T ss_pred CceEEEEcCCcccccCC
Confidence 57899999999999875
No 227
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=68.21 E-value=13 Score=30.67 Aligned_cols=30 Identities=13% Similarity=-0.181 Sum_probs=26.3
Q ss_pred CCcccCCCHHHHHHHHhHCCCeEEEEeCCc
Q 026879 141 EAWHLPHGAYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 141 ~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
.++-+.|++.++++.++++|..+.+.||+.
T Consensus 81 GEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ 110 (318)
T TIGR03470 81 GEPLLHPEIDEIVRGLVARKKFVYLCTNAL 110 (318)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEecCce
Confidence 335678999999999999999999999986
No 228
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=65.28 E-value=39 Score=25.89 Aligned_cols=61 Identities=16% Similarity=0.050 Sum_probs=37.5
Q ss_pred HHHHHHHHhHCCCeEEEEeCCc--hhHHHHHHh-cCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCC
Q 026879 149 AYQSILLLKDAGVKVAVVSNFD--TRLRKLLKD-LNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHG 215 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~--~~~~~~l~~-~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~ 215 (231)
+..+++.|++. |++++++|-. .+-...+.+ .|.. .-.+-+....+ -++.+...+++++...
T Consensus 30 ie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~--i~~v~TG~~CH---~da~m~~~ai~~l~~~ 93 (202)
T COG0378 30 IEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEP--IIGVETGKGCH---LDASMNLEAIEELVLD 93 (202)
T ss_pred HHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCe--eEEeccCCccC---CcHHHHHHHHHHHhhc
Confidence 34678888888 9999999933 222334444 4432 23333433332 4677888888888754
No 229
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=65.04 E-value=16 Score=27.40 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=25.0
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCch
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT 171 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~ 171 (231)
+-++|++.++++.+++.|+.+.+.||+..
T Consensus 73 Pll~~~l~~li~~~~~~g~~v~i~TNg~~ 101 (191)
T TIGR02495 73 PTLQAGLPDFLRKVRELGFEVKLDTNGSN 101 (191)
T ss_pred ccCcHhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45667888999999999999999999864
No 230
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=64.60 E-value=7 Score=30.78 Aligned_cols=30 Identities=20% Similarity=0.003 Sum_probs=25.8
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR 172 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~ 172 (231)
+-++++..++++.+++.|+++.+-||+...
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 345688999999999999999999998753
No 231
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=62.51 E-value=15 Score=35.09 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=40.7
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcccccc--EEEecCc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFD--AVVISSE 194 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd--~ii~s~~ 194 (231)
+|-|++.++++.|++.|+++.++|+-... +..+.+..|+..--+ -++.+.+
T Consensus 547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~e 600 (917)
T COG0474 547 PPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAE 600 (917)
T ss_pred CCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHH
Confidence 78899999999999999999999985555 688889999765432 2555544
No 232
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=61.85 E-value=14 Score=32.62 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=35.8
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccc
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF 186 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~f 186 (231)
+-||++|-+.+|++.|++...+|+-+.- ...+.+..|++++.
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfi 490 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFI 490 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhh
Confidence 5799999999999999999999986654 57788889987654
No 233
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=61.51 E-value=12 Score=36.09 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=34.7
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
++-|++.+.+++|++.|+++.++|+-+.. +....+..|+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 608 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 56789999999999999999999986655 68888888884
No 234
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=60.91 E-value=9.2 Score=29.61 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=24.0
Q ss_pred cccCCC-HHHHHHHHhHCCCeEEEEeCCch
Q 026879 143 WHLPHG-AYQSILLLKDAGVKVAVVSNFDT 171 (231)
Q Consensus 143 ~~~~pg-v~~~L~~L~~~g~~i~i~Sn~~~ 171 (231)
+.+.++ +.++++.+++.|+.+++-||+..
T Consensus 49 Pllq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 49 VLMQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred HHcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 345666 68999999999999999999853
No 235
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=59.05 E-value=14 Score=35.96 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=34.2
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~ 184 (231)
++-||+.++++.|++.|+++.++|+-..+ +..+....|+-+
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~ 672 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLS 672 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCC
Confidence 68899999999999999999999985555 677777777643
No 236
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=58.74 E-value=22 Score=27.93 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=41.5
Q ss_pred CCeEEEEeCCch--h----HHHHHHhcCccccccEEEec----CcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 160 GVKVAVVSNFDT--R----LRKLLKDLNVIDLFDAVVIS----SEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 160 g~~i~i~Sn~~~--~----~~~~l~~~gl~~~fd~ii~s----~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
-+++.++..... + +...+...++. +..++++ +-.....++....+.+++.+|++++ +|++++|+.
T Consensus 119 ~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~-~~i~~GD~~ 193 (249)
T TIGR01485 119 PHKVSFFLDPEAAPEVIKQLTEMLKETGLD--VKLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPS-QTLVCGDSG 193 (249)
T ss_pred CeeEEEEechhhhhHHHHHHHHHHHhcCCC--EEEEEECCceEEEEeCCCChHHHHHHHHHHcCCCcc-CEEEEECCh
Confidence 367777664322 1 23344444443 2333433 3345667888899999999999887 899999974
No 237
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=58.44 E-value=27 Score=34.04 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=35.8
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~ 184 (231)
++-|++.+.++.|++.|+++.++|+-+.. +..+.+..|+.+
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~ 697 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVN 697 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 57899999999999999999999986655 688889999853
No 238
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=57.94 E-value=17 Score=28.23 Aligned_cols=65 Identities=8% Similarity=0.009 Sum_probs=41.6
Q ss_pred CCeEEEEeCCc--h---hHHHHHHhcCccccccEEEec----CcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 160 GVKVAVVSNFD--T---RLRKLLKDLNVIDLFDAVVIS----SEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 160 g~~i~i~Sn~~--~---~~~~~l~~~gl~~~fd~ii~s----~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
.+++.+..... . ++...++..+.. +..++++ +-....+++....+.+++++|++++ ++++++|+.
T Consensus 112 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~g~~~~-~~i~~GD~~ 185 (236)
T TIGR02471 112 PFKISYLLDPEGEPILPQIRQRLRQQSQA--AKVILSCGWFLDVLPLRASKGLALRYLSYRWGLPLE-QILVAGDSG 185 (236)
T ss_pred CeeEEEEECcccchHHHHHHHHHHhccCC--EEEEEECCceEEEeeCCCChHHHHHHHHHHhCCCHH-HEEEEcCCc
Confidence 36666665432 1 134445554432 2334444 2344567888899999999999887 899999985
No 239
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=57.78 E-value=25 Score=29.39 Aligned_cols=41 Identities=7% Similarity=-0.061 Sum_probs=30.4
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCc---hhHHHHHHhcCcc
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFD---TRLRKLLKDLNVI 183 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~---~~~~~~l~~~gl~ 183 (231)
+-+.|+..++++.+++.|+.+.+.||+. .+....|...|+.
T Consensus 64 Pll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~ 107 (358)
T TIGR02109 64 PLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLD 107 (358)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCC
Confidence 4567899999999999999999999975 2333445555543
No 240
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=57.55 E-value=18 Score=28.92 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=39.7
Q ss_pred HHHhHCCCeEEEE---eCCchh-HHHHHHhcCcc----ccccEEEecCcCCCCCCCHHHHHHHHHhcCCCC-CccceeeC
Q 026879 154 LLLKDAGVKVAVV---SNFDTR-LRKLLKDLNVI----DLFDAVVISSEVGCEKPDPRIFKAALGTSEHGF-QLSCSVMP 224 (231)
Q Consensus 154 ~~L~~~g~~i~i~---Sn~~~~-~~~~l~~~gl~----~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~-~~~~~v~~ 224 (231)
..++..++...++ ++...+ +...++..++. .+|..++..+ .+....+.+++.+|+++ + ++++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~------~Kg~al~~l~~~~~i~~~~-~v~~~G 214 (273)
T PRK00192 142 RLAKDREFSEPFLWNGSEAAKERFEEALKRLGLKVTRGGRFLHLLGGG------DKGKAVRWLKELYRRQDGV-ETIALG 214 (273)
T ss_pred HHHHhcccCCceeecCchHHHHHHHHHHHHcCCEEEECCeEEEEeCCC------CHHHHHHHHHHHHhccCCc-eEEEEc
Confidence 3344444554444 332222 45556665654 3333344432 23457899999999998 7 999999
Q ss_pred CCc
Q 026879 225 SSL 227 (231)
Q Consensus 225 d~~ 227 (231)
|+.
T Consensus 215 Ds~ 217 (273)
T PRK00192 215 DSP 217 (273)
T ss_pred CCh
Confidence 975
No 241
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=57.16 E-value=21 Score=33.41 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=37.4
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcccccc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFD 187 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd 187 (231)
+|-|++.+.++.+++.|+++..+|+-+.. +..+.+..|+...=+
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~e 628 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDE 628 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCc
Confidence 68899999999999999999999986666 688888888754433
No 242
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=56.82 E-value=28 Score=24.57 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=32.6
Q ss_pred HHHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCce
Q 026879 154 LLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSLF 228 (231)
Q Consensus 154 ~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 228 (231)
..|.+.|+....+.+.. .+.. .....+.+...-++.|++..... ++ +|..+++.+++++++...+-++.+-
T Consensus 7 ~~LqeMGItqW~Lr~P~-~L~g-~~~i~lp~~~rLliVs~~~p~~~-~~-L~~dVLrsl~L~~~q~~~ltpeq~~ 77 (128)
T PF03603_consen 7 WLLQEMGITQWQLRRPE-VLQG-EIAISLPESCRLLIVSDELPQLD-DP-LFQDVLRSLKLTPEQVLHLTPEQLA 77 (128)
T ss_dssp HHHHHCT--EEEES-GG-GTS---S-----TT--EEEE-SS---TT-SH-HHHHHHHHTT--GGGEEEE-CCGGG
T ss_pred HHHHHcCCCeEEeCCcc-ccCC-CccccCcccceEEEEeCCCCCcc-Ch-HHHHHHHHcCCCHHHhhccCHHHHh
Confidence 34667788888877632 2111 22233445566677777654322 44 8999999999998855454555543
No 243
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=55.44 E-value=17 Score=26.63 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCc
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE 194 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~ 194 (231)
.++.++=+.|++.|.++.++.+...+ +...++..++ +.|++..+
T Consensus 53 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~ 97 (165)
T PF00875_consen 53 ESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGA----TAVYFNEE 97 (165)
T ss_dssp HHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTE----SEEEEE--
T ss_pred HHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCc----CeeEeccc
Confidence 34556777788889999999986665 5677777775 46666544
No 244
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=54.68 E-value=28 Score=29.35 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=30.2
Q ss_pred CcccCCCHHHHHHHHhHCCCeEEEEeCCc---hhHHHHHHhcCc
Q 026879 142 AWHLPHGAYQSILLLKDAGVKVAVVSNFD---TRLRKLLKDLNV 182 (231)
Q Consensus 142 ~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~---~~~~~~l~~~gl 182 (231)
+.-+.|++.++++.+++.|+.+.+.||+. .+....+...|+
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~ 115 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGL 115 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCC
Confidence 34667889999999999999999999975 233344555554
No 245
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=54.21 E-value=20 Score=25.97 Aligned_cols=25 Identities=12% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCch
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDT 171 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~ 171 (231)
+++.++++.+++.|+++.+.||+..
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC
Confidence 5678999999999999999999754
No 246
>PLN02382 probable sucrose-phosphatase
Probab=53.19 E-value=7.9 Score=33.29 Aligned_cols=25 Identities=12% Similarity=-0.121 Sum_probs=18.1
Q ss_pred HHHHHHHHHhc---CCCCCccceeeCCCc
Q 026879 202 PRIFKAALGTS---EHGFQLSCSVMPSSL 227 (231)
Q Consensus 202 ~~~~~~~~~~~---~~~~~~~~~v~~d~~ 227 (231)
-...+.+++.+ |++++ ++++++|+.
T Consensus 177 g~Al~~L~~~~~~~gi~~~-~~iafGDs~ 204 (413)
T PLN02382 177 GQALAYLLKKLKAEGKAPV-NTLVCGDSG 204 (413)
T ss_pred HHHHHHHHHHhhhcCCChh-cEEEEeCCH
Confidence 44677777777 77777 778888863
No 247
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=52.79 E-value=25 Score=26.93 Aligned_cols=63 Identities=13% Similarity=-0.039 Sum_probs=37.1
Q ss_pred EEEeCCch-hHHHHHHhcCccccc-cEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 164 AVVSNFDT-RLRKLLKDLNVIDLF-DAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 164 ~i~Sn~~~-~~~~~l~~~gl~~~f-d~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
.+.+..+. .+...++.++..-.+ ......+-.....++...++++++.+|++++ ++++++|+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~-~~i~~GD~~ 175 (225)
T TIGR01482 111 KMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPG-ETLVCGDSE 175 (225)
T ss_pred EEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHH-HEEEECCCH
Confidence 34443333 356666666643111 0001112223445667789999999999987 899999974
No 248
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.10 E-value=1.2e+02 Score=24.04 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=30.1
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCc
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl 182 (231)
..+.||+.+.++.|.+. .+=+|+|.+-.+ +++.....|+
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~ 121 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGV 121 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCC
Confidence 48899999999999998 677777765544 5666666665
No 249
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=51.61 E-value=23 Score=30.44 Aligned_cols=41 Identities=15% Similarity=0.036 Sum_probs=30.9
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEE-eCCc----hhHHHHHHhcCcc
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVV-SNFD----TRLRKLLKDLNVI 183 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~-Sn~~----~~~~~~l~~~gl~ 183 (231)
.-.+|.+.++|+.+++.|+.+.+. ||+. .+....+..++++
T Consensus 85 pl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 85 VSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred cccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 467899999999999999999995 9954 2344555556654
No 250
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=51.35 E-value=34 Score=22.68 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=26.9
Q ss_pred HHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccc
Q 026879 151 QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLF 186 (231)
Q Consensus 151 ~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~f 186 (231)
.+.++++++|.++.+ +|.+..+...++..|+.+.|
T Consensus 62 ~~~~~~~~~g~~l~l-~~~~~~v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 62 GRYKKIKNEGGEVIV-CNVSPAVKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHcCCEEEE-EeCCHHHHHHHHHhCCceEE
Confidence 567778888887775 45566788889999998777
No 251
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=50.72 E-value=38 Score=21.77 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=25.3
Q ss_pred HHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccc
Q 026879 150 YQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLF 186 (231)
Q Consensus 150 ~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~f 186 (231)
.++.+.++++|..+ .+++.+.++...++..|+.+.|
T Consensus 60 ~~l~~~~~~~g~~v-~i~~~~~~~~~~l~~~gl~~~~ 95 (99)
T cd07043 60 LGAYKRARAAGGRL-VLVNVSPAVRRVLELTGLDRLF 95 (99)
T ss_pred HHHHHHHHHcCCeE-EEEcCCHHHHHHHHHhCcceee
Confidence 35667777887764 4455566788889999987655
No 252
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=50.33 E-value=15 Score=20.58 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHhHCCCeEEEEeCCchhH-HHHHHh
Q 026879 150 YQSILLLKDAGVKVAVVSNFDTRL-RKLLKD 179 (231)
Q Consensus 150 ~~~L~~L~~~g~~i~i~Sn~~~~~-~~~l~~ 179 (231)
.++.+.|.+.|++.+-+|.+++.+ ..+|..
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~ 39 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRK 39 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHH
Confidence 368889999999999999888774 666654
No 253
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=50.31 E-value=9.6 Score=30.54 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.6
Q ss_pred cccEEEEecCCcccccc
Q 026879 49 AYDAVLLDAGGTLLQLA 65 (231)
Q Consensus 49 ~~k~iiFD~DGTL~d~~ 65 (231)
+-|.++.|+|+||+.+.
T Consensus 88 ~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 88 GRKTLVLDLDETLVHSS 104 (262)
T ss_pred CCceEEEeCCCcccccc
Confidence 45899999999998875
No 254
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=50.24 E-value=80 Score=21.60 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=25.3
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHH
Q 026879 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADI 88 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
+.|-+|=+|=|++...-.......++.+.|+.++.+.+
T Consensus 7 ~~i~~D~eGfL~~~~dW~eevA~~lA~~egI~Ltd~HW 44 (109)
T PF04358_consen 7 KTIETDEEGFLVDPEDWNEEVAEALAKEEGIELTDEHW 44 (109)
T ss_dssp EEEEEETTSEESSGGG--HHHHHHHHHCTT-S--HHHH
T ss_pred EEeeeCCCcCcCChHhCCHHHHHHHHHHcCCCCCHHHH
Confidence 66899999999997655555666667778888776654
No 255
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=47.38 E-value=33 Score=26.33 Aligned_cols=62 Identities=15% Similarity=0.058 Sum_probs=37.7
Q ss_pred EEEEeCCchh-HHHHHHhcCccccccEEEec---CcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 163 VAVVSNFDTR-LRKLLKDLNVIDLFDAVVIS---SEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 163 i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s---~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
+.+.++...+ +...++..+.. +..+.+. +-......+...++.+++.+|++++ ++++++|+.
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~-~~i~~GD~~ 183 (230)
T PRK01158 118 VALRRTVPVEEVRELLEELGLD--LEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPE-EVAAIGDSE 183 (230)
T ss_pred eeecccccHHHHHHHHHHcCCc--EEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHH-HEEEECCch
Confidence 3444554433 56666665531 2222211 2222344557899999999999988 899999974
No 256
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=46.97 E-value=35 Score=26.02 Aligned_cols=62 Identities=6% Similarity=-0.093 Sum_probs=36.8
Q ss_pred EEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 164 AVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 164 ~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
.+.++...+ +...++..++..++... .-+-....-.+...++.+++.+|++++ ++++++|+.
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ei~~~~~~K~~~i~~l~~~~~i~~~-~~i~iGDs~ 173 (215)
T TIGR01487 111 IMREGKDVDEVREIIKERGLNLVDSGF-AIHIMKKGVDKGVGVEKLKELLGIKPE-EVAAIGDSE 173 (215)
T ss_pred EecCCccHHHHHHHHHhCCeEEEecCc-eEEEecCCCChHHHHHHHHHHhCCCHH-HEEEECCCH
Confidence 334443433 56667776665432210 111112223345599999999999987 899999975
No 257
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=45.90 E-value=48 Score=23.28 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=12.4
Q ss_pred ccccEEEEecCCcc
Q 026879 48 KAYDAVLLDAGGTL 61 (231)
Q Consensus 48 ~~~k~iiFD~DGTL 61 (231)
+.+..|+||+.+||
T Consensus 43 ~~P~iV~FDmK~Tl 56 (128)
T PRK13717 43 NAPVTAAFNMKQTV 56 (128)
T ss_pred CCCeEEEEehHHHH
Confidence 45788999999999
No 258
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=45.39 E-value=61 Score=24.57 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCc
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNV 182 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl 182 (231)
-+++.++.+.|.+.|++++ .|.+... .|+..|+
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~GTAk---~L~e~GI 42 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGGTAK---FLKEAGI 42 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccHHHH---HHHHcCC
Confidence 4788899999999999995 6665544 4455554
No 259
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=44.80 E-value=35 Score=26.48 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=22.4
Q ss_pred cccCCC-HHHHHHHHhHCCCeEEEEeCC
Q 026879 143 WHLPHG-AYQSILLLKDAGVKVAVVSNF 169 (231)
Q Consensus 143 ~~~~pg-v~~~L~~L~~~g~~i~i~Sn~ 169 (231)
+-+.|+ +.++++.+++.|+++.+.||+
T Consensus 76 Pll~~~~~~~li~~~~~~g~~~~i~TNG 103 (235)
T TIGR02493 76 PLLQPEFLSELFKACKELGIHTCLDTSG 103 (235)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 456677 458999999999999999998
No 260
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=44.72 E-value=27 Score=28.40 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCccceeeCCC
Q 026879 196 GCEKPDPRIFKAALGTSEHGFQLSCSVMPSS 226 (231)
Q Consensus 196 ~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~ 226 (231)
...-|+++.|.+.++++|++.++.+|+++|.
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~ 99 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDDG 99 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 4677999999999999999988667777664
No 261
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=43.86 E-value=1.3e+02 Score=22.24 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=7.1
Q ss_pred HHHHHhHCCCeEEEEeC
Q 026879 152 SILLLKDAGVKVAVVSN 168 (231)
Q Consensus 152 ~L~~L~~~g~~i~i~Sn 168 (231)
+++...+.|.+++++-.
T Consensus 40 l~~~~~~~~~~ifllG~ 56 (172)
T PF03808_consen 40 LLRRAEQRGKRIFLLGG 56 (172)
T ss_pred HHHHHHHcCCeEEEEeC
Confidence 33333334444444443
No 262
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=43.56 E-value=1.6e+02 Score=23.50 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=44.7
Q ss_pred cccCCCHHHHHHHHhHC---CCeEEEEeCCchhHHHHHHhcCcccccc--EEEecCcCCCCCCCHHHHHHHHHhcC
Q 026879 143 WHLPHGAYQSILLLKDA---GVKVAVVSNFDTRLRKLLKDLNVIDLFD--AVVISSEVGCEKPDPRIFKAALGTSE 213 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~---g~~i~i~Sn~~~~~~~~l~~~gl~~~fd--~ii~s~~~~~~KP~~~~~~~~~~~~~ 213 (231)
-.++|+..++++..+.. |+.+.-+++.+...-..+..+|-.-..- .-|+++ . .-.+|+.++.+.+..+
T Consensus 103 ~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg-~--Gi~~~~~I~~I~e~~~ 175 (248)
T cd04728 103 KTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG-Q--GLLNPYNLRIIIERAD 175 (248)
T ss_pred cccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC-C--CCCCHHHHHHHHHhCC
Confidence 36789999999988887 9999955554555444566666543333 445544 2 3335888888877644
No 263
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=43.37 E-value=78 Score=22.25 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=20.1
Q ss_pred CCCeEEEEeCCch---hH-HHHHHhcCccccccEEEecCcCCCCCCCHH
Q 026879 159 AGVKVAVVSNFDT---RL-RKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (231)
Q Consensus 159 ~g~~i~i~Sn~~~---~~-~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~ 203 (231)
.|+...+.+.... .+ +...+...-.++-=.+++.||.+..|++..
T Consensus 23 ~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~ 71 (125)
T PF10137_consen 23 LGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEE 71 (125)
T ss_pred CCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcc
Confidence 4667777665332 12 222222221111123556677766665543
No 264
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=43.16 E-value=29 Score=23.91 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=22.3
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCc
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
--+++.+.++.++++|.++..+|+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34678899999999999999999854
No 265
>PLN03190 aminophospholipid translocase; Provisional
Probab=42.79 E-value=41 Score=33.24 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=32.9
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~ 183 (231)
++-+|+.++++.|++.|+++.++|+-..+ +..+....++-
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~Ll 766 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLL 766 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCC
Confidence 68899999999999999999999985554 56666666653
No 266
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=42.10 E-value=28 Score=23.86 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCCch
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNFDT 171 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~~~ 171 (231)
-+++.+.++.++++|.++..+|+.+.
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 35688999999999999999998653
No 267
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=42.00 E-value=39 Score=21.08 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=22.5
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHHhC
Q 026879 51 DAVLLDAGGTLLQLAEPVEETYASIARKYG 80 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~ 80 (231)
+-|++|++|+-.-+......++..+..+++
T Consensus 18 ~~V~lDF~gv~~~~ssFl~eafg~l~~~~~ 47 (74)
T PF14213_consen 18 EKVVLDFEGVESITSSFLNEAFGQLVREFG 47 (74)
T ss_pred CeEEEECCCcccccHHHHHHHHHHHHHHcC
Confidence 349999999966665666667777777776
No 268
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=41.98 E-value=64 Score=24.32 Aligned_cols=87 Identities=13% Similarity=0.041 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHcC----CCcccCCCHHHHHHHHhHCCCeEEEEeCCchh--HHH--HHHh--cCccccccEEEecCc
Q 026879 125 TNDDYFEEVYEYYAKG----EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR--LRK--LLKD--LNVIDLFDAVVISSE 194 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~~----~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~--~~~--~l~~--~gl~~~fd~ii~s~~ 194 (231)
+.......+.+.+.-. -+.+++| .+|..++++|++++++.....+ ... .+.. -.+-..||.|+.-++
T Consensus 82 D~~~~~~rfl~~~~P~~~i~~EtElWP---nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~ 158 (186)
T PF04413_consen 82 DFPWAVRRFLDHWRPDLLIWVETELWP---NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSE 158 (186)
T ss_dssp SSHHHHHHHHHHH--SEEEEES----H---HHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSH
T ss_pred cCHHHHHHHHHHhCCCEEEEEccccCH---HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCH
Confidence 4445567777777542 2234555 7899999999999999863322 211 1111 123456899998765
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCccceeeC
Q 026879 195 VGCEKPDPRIFKAALGTSEHGFQLSCSVMP 224 (231)
Q Consensus 195 ~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~ 224 (231)
.-..-+.++|+.++ .+.+.+
T Consensus 159 ---------~da~r~~~lG~~~~-~v~v~G 178 (186)
T PF04413_consen 159 ---------ADAERFRKLGAPPE-RVHVTG 178 (186)
T ss_dssp ---------HHHHHHHTTT-S---SEEE--
T ss_pred ---------HHHHHHHHcCCCcc-eEEEeC
Confidence 33456677888766 555544
No 269
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=41.65 E-value=3.7e+02 Score=26.80 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=35.0
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcc-ccccEEEe
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI-DLFDAVVI 191 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~-~~fd~ii~ 191 (231)
++-.||.+.++.|++.|++|.++|+-..+ +-.+.-..++. +-..-++.
T Consensus 651 kLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~~m~~i~i 700 (1151)
T KOG0206|consen 651 KLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLRQDMKLIII 700 (1151)
T ss_pred hhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCCCCceEEEE
Confidence 57899999999999999999999985555 55555555543 33343443
No 270
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=40.69 E-value=66 Score=30.50 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=36.0
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCcccc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDL 185 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~ 185 (231)
+.-||+++.++.++..|+.+-.+|+-+-. ++.+....||...
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~ 689 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTP 689 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccC
Confidence 57899999999999999999999986654 6888888887643
No 271
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.47 E-value=52 Score=22.75 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=18.7
Q ss_pred CCHHHHHHHHhHCCC-eEE-EEe-CCchhHHHHHHhcCccc
Q 026879 147 HGAYQSILLLKDAGV-KVA-VVS-NFDTRLRKLLKDLNVID 184 (231)
Q Consensus 147 pgv~~~L~~L~~~g~-~i~-i~S-n~~~~~~~~l~~~gl~~ 184 (231)
+.+.++++.|++.|. .+. ++- +...+....+..+|++.
T Consensus 65 ~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~ 105 (122)
T cd02071 65 TLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAE 105 (122)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCE
Confidence 345566677776643 222 222 23333345566677543
No 272
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=39.64 E-value=1.2e+02 Score=20.54 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=31.2
Q ss_pred HHHhHCCCeEEEEeC----CchhHHHHHHhcCccccccEEEecCcCCC---CCCCHHHHHHHHHhcCCC
Q 026879 154 LLLKDAGVKVAVVSN----FDTRLRKLLKDLNVIDLFDAVVISSEVGC---EKPDPRIFKAALGTSEHG 215 (231)
Q Consensus 154 ~~L~~~g~~i~i~Sn----~~~~~~~~l~~~gl~~~fd~ii~s~~~~~---~KP~~~~~~~~~~~~~~~ 215 (231)
+.|++.|+++-.+.- +..++...+..- ..+|.++..-+-.. ..++-...++++-..+++
T Consensus 36 ~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~---g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip 101 (112)
T cd00532 36 RVLADAGIPVRAVSKRHEDGEPTVDAAIAEK---GKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIP 101 (112)
T ss_pred HHHHHcCCceEEEEecCCCCCcHHHHHHhCC---CCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCC
Confidence 334457777665543 223344344330 33566665433222 466666777777777774
No 273
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=39.11 E-value=2.3e+02 Score=23.71 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHhHCCCeEEEE-eCCchh---HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcC
Q 026879 146 PHGAYQSILLLKDAGVKVAVV-SNFDTR---LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSE 213 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~-Sn~~~~---~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~ 213 (231)
+|.-.-+|++. -|+.-.|. |++.++ +...+..++=. .+++..|+ ..-||++|-.+++++-
T Consensus 239 ~P~GPl~L~~~--g~~~~~i~~sga~rK~~~l~nil~~~p~~---kfvLVGDs---GE~DpeIYae~v~~fP 302 (373)
T COG4850 239 FPYGPLLLRRW--GGVLDNIIESGAARKGQSLRNILRRYPDR---KFVLVGDS---GEHDPEIYAEMVRCFP 302 (373)
T ss_pred CCCCchhHhhc--CCcccccccchhhhcccHHHHHHHhCCCc---eEEEecCC---CCcCHHHHHHHHHhCc
Confidence 34444566665 23434444 444443 24466665532 45666555 2348999999888763
No 274
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=38.33 E-value=39 Score=23.24 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCCch
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNFDT 171 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~~~ 171 (231)
-+++.+.++.++++|.++..+|+...
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 46788899999999999999998553
No 275
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=38.20 E-value=94 Score=21.80 Aligned_cols=72 Identities=18% Similarity=0.067 Sum_probs=44.0
Q ss_pred CCcccCCCHHHHHHHHhHC---CCeEEEEeCCch---hHHHHHHhcCccccccEEEecCcC--C---CCCCCHHHHHHHH
Q 026879 141 EAWHLPHGAYQSILLLKDA---GVKVAVVSNFDT---RLRKLLKDLNVIDLFDAVVISSEV--G---CEKPDPRIFKAAL 209 (231)
Q Consensus 141 ~~~~~~pgv~~~L~~L~~~---g~~i~i~Sn~~~---~~~~~l~~~gl~~~fd~ii~s~~~--~---~~KP~~~~~~~~~ 209 (231)
.....+|+..+.+..+.+. ++++.+.||+.. +....+..+++....-.+-+.++. . ..++..+-+.+++
T Consensus 54 gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l 133 (166)
T PF04055_consen 54 GEPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEAL 133 (166)
T ss_dssp STGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHH
Confidence 3356778888888888876 899999999764 245566666643322233333332 0 2456666666666
Q ss_pred Hhc
Q 026879 210 GTS 212 (231)
Q Consensus 210 ~~~ 212 (231)
+.+
T Consensus 134 ~~l 136 (166)
T PF04055_consen 134 ERL 136 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 276
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.02 E-value=1.4e+02 Score=21.00 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=30.2
Q ss_pred HHhHCCCeEEEEeCCchh---HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHH
Q 026879 155 LLKDAGVKVAVVSNFDTR---LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAAL 209 (231)
Q Consensus 155 ~L~~~g~~i~i~Sn~~~~---~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~ 209 (231)
.+... -++++.||.... +..++.++++... +.+-.-.......|.|.++..++
T Consensus 32 yi~sA-~r~vV~t~N~~K~~aindvlrrf~l~Ea-eml~~~T~~ADlTrmPA~tKalm 87 (156)
T COG4019 32 YIVSA-KRIVVATNNQKKFKAINDVLRRFCLAEA-EMLDIDTRFADLTRMPALTKALM 87 (156)
T ss_pred HHhcc-ceEEEecCCHHHHHHHHHHHHHhccchH-HHhcCccchhhcccChHHHHHHH
Confidence 33334 689999975543 4777888776532 11111112234567787877665
No 277
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=37.50 E-value=75 Score=25.81 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=28.4
Q ss_pred cccCCCHHHHHHHHhHCCC-eEEEEeCCch--hHHHHHHhcCc
Q 026879 143 WHLPHGAYQSILLLKDAGV-KVAVVSNFDT--RLRKLLKDLNV 182 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~-~i~i~Sn~~~--~~~~~l~~~gl 182 (231)
+-+.+++.++++.+++.|+ .+.+.||+.. +....+...|+
T Consensus 67 Pll~~~l~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~ 109 (302)
T TIGR02668 67 PLLRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGL 109 (302)
T ss_pred cccccCHHHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCC
Confidence 4567888899999998888 8889999853 23334455554
No 278
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=37.21 E-value=86 Score=20.65 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=25.3
Q ss_pred HHHHHHhHCCCeEEEEeCCchhHHHHHHhcCcccccc
Q 026879 151 QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFD 187 (231)
Q Consensus 151 ~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd 187 (231)
++.+.++++|.++.++. .+..+...++..|+...|+
T Consensus 66 ~~~~~~~~~~~~~~l~~-~~~~~~~~l~~~~l~~~~~ 101 (108)
T TIGR00377 66 GRYKQVRRVGGQLVLVS-VSPRVARLLDITGLLRIIP 101 (108)
T ss_pred HHHHHHHhcCCEEEEEe-CCHHHHHHHHHhChhheec
Confidence 45666777887765554 4666788888999887554
No 279
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=37.10 E-value=23 Score=30.12 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=16.3
Q ss_pred cccccEEEEecCCcccccc
Q 026879 47 KKAYDAVLLDAGGTLLQLA 65 (231)
Q Consensus 47 ~~~~k~iiFD~DGTL~d~~ 65 (231)
+.++.+|-||+|+||....
T Consensus 24 l~~i~~~GfdmDyTL~~Y~ 42 (424)
T KOG2469|consen 24 LENIGIVGFDMDYTLARYN 42 (424)
T ss_pred hhcCcEEeeccccchhhhc
Confidence 5578999999999998765
No 280
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=36.78 E-value=1.1e+02 Score=20.50 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=24.4
Q ss_pred HHHHHHhHCCCeEEEEeCCch-hHHHHHHhcCc
Q 026879 151 QSILLLKDAGVKVAVVSNFDT-RLRKLLKDLNV 182 (231)
Q Consensus 151 ~~L~~L~~~g~~i~i~Sn~~~-~~~~~l~~~gl 182 (231)
+...+|++.|+++++++-++. .+....+..++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~ 36 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCELTGF 36 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCC
Confidence 456788889999999998776 46766666554
No 281
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=36.69 E-value=1.3e+02 Score=22.04 Aligned_cols=46 Identities=24% Similarity=0.190 Sum_probs=25.9
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCc-cccccEEEecC
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNV-IDLFDAVVISS 193 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl-~~~fd~ii~s~ 193 (231)
..+.++|..+++.|.++++.-.+.+- ...+..+|+ .++++.++-.+
T Consensus 55 ~~l~~~L~~~~~~gk~I~~yGA~~kg-~tlln~~g~~~~~I~~vvD~n 101 (160)
T PF08484_consen 55 AELREFLEKLKAEGKRIAGYGAGAKG-NTLLNYFGLDNDLIDYVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHHTT--EEEE---SHH-HHHHHHHT--TTTS--EEES-
T ss_pred HHHHHHHHHHHHcCCEEEEECcchHH-HHHHHHhCCCcceeEEEEeCC
Confidence 45678999999999889888764432 345777887 35566666543
No 282
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=36.51 E-value=52 Score=23.36 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHhcCCCCCccceeeCC
Q 026879 197 CEKPDPRIFKAALGTSEHGFQLSCSVMPS 225 (231)
Q Consensus 197 ~~KP~~~~~~~~~~~~~~~~~~~~~v~~d 225 (231)
...|+++-|++.+..+|+.+...+|++.+
T Consensus 75 ~~~p~~~~~~~~~~~~GI~~~~~vVvY~~ 103 (138)
T cd01445 75 SMEPSEAEFAAMFEAKGIDLDKHLIATDG 103 (138)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence 34566777888888888877766666664
No 283
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=35.19 E-value=1.6e+02 Score=24.38 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=37.1
Q ss_pred HHHHHHHhHCCCeEEEEeCCchhH----HHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcC
Q 026879 150 YQSILLLKDAGVKVAVVSNFDTRL----RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSE 213 (231)
Q Consensus 150 ~~~L~~L~~~g~~i~i~Sn~~~~~----~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~ 213 (231)
++.-.+|.++|+.++++|=....+ .++.+..++. -.++.. ...||+. .|+++.+.+.
T Consensus 63 KayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~ve---v~~i~~---Dft~~~~-~ye~i~~~l~ 123 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVE---VRIIAI---DFTKGDE-VYEKLLEKLA 123 (312)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcE---EEEEEE---ecCCCch-hHHHHHHHhc
Confidence 455688999999999999544432 5556666643 123332 2366776 8888887774
No 284
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=35.05 E-value=68 Score=22.38 Aligned_cols=27 Identities=22% Similarity=-0.012 Sum_probs=23.8
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
..+|...+++++..+.|++++++.-+-
T Consensus 59 ~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 59 PNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred CCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 667999999999999999999998643
No 285
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=34.91 E-value=1.4e+02 Score=25.36 Aligned_cols=76 Identities=14% Similarity=0.078 Sum_probs=42.8
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCcccee
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSV 222 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 222 (231)
.--||+.-+|..+... |.|+++|....- +..+++.+.-..++.--+..+.....-+. -.+=+..+|.+++ .++|
T Consensus 214 ~kRPgvD~FL~~~a~~-yEIVi~sse~gmt~~pl~d~lDP~g~IsYkLfr~~t~y~~G~---HvKdls~LNRdl~-kViv 288 (393)
T KOG2832|consen 214 KKRPGVDYFLGHLAKY-YEIVVYSSEQGMTVFPLLDALDPKGYISYKLFRGATKYEEGH---HVKDLSKLNRDLQ-KVIV 288 (393)
T ss_pred ccCchHHHHHHhhccc-ceEEEEecCCccchhhhHhhcCCcceEEEEEecCcccccCcc---chhhhhhhccccc-eeEE
Confidence 4579999999999955 999999975433 45566665544444332222221111111 0223556666666 4554
Q ss_pred eC
Q 026879 223 MP 224 (231)
Q Consensus 223 ~~ 224 (231)
|+
T Consensus 289 Vd 290 (393)
T KOG2832|consen 289 VD 290 (393)
T ss_pred EE
Confidence 43
No 286
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=34.50 E-value=1.7e+02 Score=21.80 Aligned_cols=11 Identities=27% Similarity=0.241 Sum_probs=6.1
Q ss_pred EEEEeCCchhH
Q 026879 163 VAVVSNFDTRL 173 (231)
Q Consensus 163 i~i~Sn~~~~~ 173 (231)
+.++|.++..+
T Consensus 2 VIlvTDGD~~A 12 (180)
T PF14097_consen 2 VILVTDGDEYA 12 (180)
T ss_pred EEEEECChHHH
Confidence 45666666443
No 287
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=34.09 E-value=33 Score=26.89 Aligned_cols=28 Identities=14% Similarity=-0.057 Sum_probs=23.1
Q ss_pred cccCCCH-HHHHHHHhHCCCeEEEEeCCc
Q 026879 143 WHLPHGA-YQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 143 ~~~~pgv-~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
+.+.++. .++++.+++.|+++.+.||+.
T Consensus 81 Pll~~~~~~~l~~~~k~~g~~i~l~TNG~ 109 (246)
T PRK11145 81 AILQAEFVRDWFRACKKEGIHTCLDTNGF 109 (246)
T ss_pred HhcCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3456664 589999999999999999986
No 288
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=33.79 E-value=58 Score=25.19 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.7
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCchh
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFDTR 172 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~~~ 172 (231)
..|+..++++.|++.|+++.+=||++-.
T Consensus 84 ~~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 84 LQPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred CcccHHHHHHHHHhCCceEEecCCCCcc
Confidence 3568999999999999999999998754
No 289
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=33.73 E-value=1.5e+02 Score=20.48 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=41.0
Q ss_pred CCHHHHHHH-HhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEe-cCcCCCCCCCHHHHHHHHHh
Q 026879 147 HGAYQSILL-LKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVI-SSEVGCEKPDPRIFKAALGT 211 (231)
Q Consensus 147 pgv~~~L~~-L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~-s~~~~~~KP~~~~~~~~~~~ 211 (231)
.++.+.|++ |.+.++-+.++|....+ +...++... ..+-.|+- .+--+.+.|.++...+-++.
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~--~~~PaIieIP~k~~~y~~~~d~i~~~~~~ 111 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT--RSIPAVLEIPSKDHPYDASKDSILRRARG 111 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC--CcCCEEEEECCCCCCCCCcccHHHHHHHH
Confidence 567788888 77778999999976654 677777755 44555443 33235567777766554443
No 290
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=33.57 E-value=57 Score=26.07 Aligned_cols=27 Identities=22% Similarity=0.043 Sum_probs=23.9
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCc
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
.-+|+..++++.|+++|+++.+..+..
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChh
Confidence 568999999999999999999988744
No 291
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=33.39 E-value=28 Score=22.03 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=13.4
Q ss_pred ccEEEEecCCcccccc
Q 026879 50 YDAVLLDAGGTLLQLA 65 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~ 65 (231)
.-.|+++-|||.++++
T Consensus 38 ~~~l~L~eDGT~VddE 53 (74)
T smart00266 38 PVTLVLEEDGTIVDDE 53 (74)
T ss_pred CcEEEEecCCcEEccH
Confidence 3468899999999875
No 292
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=33.15 E-value=7.3 Score=21.76 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=16.5
Q ss_pred HHHHHHhHCCCeEEEEeCCchhH-HHHHHh
Q 026879 151 QSILLLKDAGVKVAVVSNFDTRL-RKLLKD 179 (231)
Q Consensus 151 ~~L~~L~~~g~~i~i~Sn~~~~~-~~~l~~ 179 (231)
++.++|++.|+..+-+|.+.+.+ ..+|..
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL~k 39 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKLAK 39 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHCHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHH
Confidence 46678888999999999888774 655554
No 293
>COG4333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.13 E-value=14 Score=26.37 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.9
Q ss_pred hhhhhhccCchHHHHHHh
Q 026879 2 EACISKCCHGNSLLKALK 19 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (231)
+|+.|.|+..+++|+|--
T Consensus 15 ~AifS~cgkyRY~L~r~W 32 (167)
T COG4333 15 DAIFSPCGKYRYSLSRVW 32 (167)
T ss_pred eeeeccchhhhhhhhhhh
Confidence 699999999999998754
No 294
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=33.01 E-value=1.2e+02 Score=20.63 Aligned_cols=57 Identities=23% Similarity=0.182 Sum_probs=36.8
Q ss_pred CCCcccCCCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcCCCCC
Q 026879 140 GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEK 199 (231)
Q Consensus 140 ~~~~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~~~K 199 (231)
...+-.+|+..++++-|+-. +++.+|+....... ++.....+..=-++++.+.+..|
T Consensus 19 gk~livlpdl~DAiEvl~p~--~V~~i~~~~~~~~~-~~~~~~~~rvllVf~G~d~gfsk 75 (106)
T PF09895_consen 19 GKSLIVLPDLKDAIEVLKPD--VVYLISRSGEEEEK-LEFLKIEGRVLLVFSGSDPGFSK 75 (106)
T ss_pred CCcEEEeCCHHHHHHhcCCc--EEEEEcCccccccc-ccccCcCCcEEEEEeCCCCCCCh
Confidence 45578999999999999986 88889875544322 23333333333466666655444
No 295
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=32.69 E-value=1.9e+02 Score=24.42 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=43.7
Q ss_pred cCCCHH-HHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCC
Q 026879 145 LPHGAY-QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHG 215 (231)
Q Consensus 145 ~~pgv~-~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~ 215 (231)
+.=|++ ..|+.|.++|+++.++--... ...+++ +. .|+++.|+--|.+++-......+-+-++..
T Consensus 185 iD~GvK~nIlr~L~~rg~~vtVVP~~t~-~eeIl~---~~--pDGiflSNGPGDP~~~~~~i~~ik~l~~~~ 250 (368)
T COG0505 185 IDFGVKRNILRELVKRGCRVTVVPADTS-AEEILA---LN--PDGIFLSNGPGDPAPLDYAIETIKELLGTK 250 (368)
T ss_pred EEcCccHHHHHHHHHCCCeEEEEcCCCC-HHHHHh---hC--CCEEEEeCCCCChhHHHHHHHHHHHHhccC
Confidence 344566 789999999999999974221 222222 22 489999998887777777776666666644
No 296
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=32.66 E-value=49 Score=20.69 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHhHCCCeEEEEe
Q 026879 146 PHGAYQSILLLKDAGVKVAVVS 167 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~S 167 (231)
-+++.++++.++++|.++..+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 3668899999999999999988
No 297
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.55 E-value=89 Score=19.94 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=18.7
Q ss_pred CHHHHHHHHhHCCCeEEEEeCCc
Q 026879 148 GAYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 148 gv~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
...++++.|++.|+++.+.|+.+
T Consensus 54 ~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 54 ELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHCCCCeEECCCCH
Confidence 37789999999999988877643
No 298
>PRK00208 thiG thiazole synthase; Reviewed
Probab=32.10 E-value=2.6e+02 Score=22.30 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=43.0
Q ss_pred ccCCCHHHHHHHHhHC---CCeEEEEeCCchhHHHHHHhcCcccccc--EEEecCcCCCCCCCHHHHHHHHHhcC
Q 026879 144 HLPHGAYQSILLLKDA---GVKVAVVSNFDTRLRKLLKDLNVIDLFD--AVVISSEVGCEKPDPRIFKAALGTSE 213 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~---g~~i~i~Sn~~~~~~~~l~~~gl~~~fd--~ii~s~~~~~~KP~~~~~~~~~~~~~ 213 (231)
.++|+..++++..+.. |+.+.-+++.+...-..+..+|-.-..- ..|++. . .-.+|+..+.+.+..+
T Consensus 104 ~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg-~--gi~~~~~i~~i~e~~~ 175 (250)
T PRK00208 104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSG-L--GLLNPYNLRIIIEQAD 175 (250)
T ss_pred CCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC-C--CCCCHHHHHHHHHhcC
Confidence 5789999999988887 9999944443554444566666543333 445544 2 2335888887777644
No 299
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=32.06 E-value=1.1e+02 Score=25.26 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=29.0
Q ss_pred cccCCCHHHHHHHHhH-CCC-eEEEEeCCch--hHHHHHHhcCcc
Q 026879 143 WHLPHGAYQSILLLKD-AGV-KVAVVSNFDT--RLRKLLKDLNVI 183 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~-~g~-~i~i~Sn~~~--~~~~~l~~~gl~ 183 (231)
+-+.+++.++++.+++ .|+ .+.+.||+.. +....+...|+.
T Consensus 70 Pll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~ 114 (334)
T TIGR02666 70 PLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLK 114 (334)
T ss_pred ccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCC
Confidence 4567889999999887 478 8889999763 234455556653
No 300
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=31.72 E-value=44 Score=25.17 Aligned_cols=31 Identities=10% Similarity=-0.099 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCccceeeCCCc
Q 026879 196 GCEKPDPRIFKAALGTSEHGFQLSCSVMPSSL 227 (231)
Q Consensus 196 ~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~ 227 (231)
+...+++...+.++++++.++. .+++++|+.
T Consensus 159 p~~~~K~~~~~~~~~~~~~~~~-~~~~~GD~~ 189 (204)
T TIGR01484 159 PAGVDKGSALQALLKELNGKRD-EILAFGDSG 189 (204)
T ss_pred cCCCChHHHHHHHHHHhCCCHH-HEEEEcCCH
Confidence 3456678899999999998877 899999974
No 301
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=31.60 E-value=89 Score=24.60 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=22.8
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchhHHHHHHh
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKD 179 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~ 179 (231)
+++++..|++. +.|+|+|....++.++-+.
T Consensus 188 IEeLi~eLk~~-yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 188 IEELITELKKK-YTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred HHHHHHHHHhc-cEEEEEeCCHHHHHHHhHh
Confidence 78999999977 9999999766554444443
No 302
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=31.59 E-value=31 Score=22.18 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=13.1
Q ss_pred cEEEEecCCcccccc
Q 026879 51 DAVLLDAGGTLLQLA 65 (231)
Q Consensus 51 k~iiFD~DGTL~d~~ 65 (231)
-.|+++-|||.+|++
T Consensus 40 ~~lvLeeDGT~Vd~E 54 (81)
T cd06537 40 LTLVLEEDGTAVDSE 54 (81)
T ss_pred eEEEEecCCCEEccH
Confidence 569999999999885
No 303
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=31.31 E-value=46 Score=26.62 Aligned_cols=28 Identities=21% Similarity=0.058 Sum_probs=24.3
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCch
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT 171 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~ 171 (231)
..++.+.++++.+++.|+.+++.||+--
T Consensus 96 ~q~e~~~~~~~~ake~Gl~~~l~TnG~~ 123 (260)
T COG1180 96 LQAEFALDLLRAAKERGLHVALDTNGFL 123 (260)
T ss_pred hhHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 4567788999999999999999999763
No 304
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=31.31 E-value=1e+02 Score=23.84 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=29.6
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccc
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLF 186 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~f 186 (231)
+.+.+.+..|.+.|.++.|++.+.......++..++...+
T Consensus 20 ~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~ 59 (242)
T PF00696_consen 20 RELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKF 59 (242)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSE
T ss_pred HHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCccc
Confidence 3445666777788999999998777777778887765433
No 305
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=31.31 E-value=1.1e+02 Score=26.29 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=18.9
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl 182 (231)
+.++=+.|++.|.++.+..+...+ +...++..++
T Consensus 63 L~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~ 97 (429)
T TIGR02765 63 LKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGV 97 (429)
T ss_pred HHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCC
Confidence 334445566666666666654444 3555555554
No 306
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=31.14 E-value=32 Score=21.95 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.4
Q ss_pred ccEEEEecCCcccccc
Q 026879 50 YDAVLLDAGGTLLQLA 65 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~ 65 (231)
.-.|+++-|||.+|++
T Consensus 40 ~~~lvL~eDGT~Vd~E 55 (78)
T cd06539 40 LVTLVLEEDGTVVDTE 55 (78)
T ss_pred CcEEEEeCCCCEEccH
Confidence 3468999999999885
No 307
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=30.78 E-value=56 Score=24.14 Aligned_cols=26 Identities=15% Similarity=0.136 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCCch
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNFDT 171 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~~~ 171 (231)
-+++.++++.++++|.++..+|+...
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46688899999999999999997543
No 308
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=30.72 E-value=1.3e+02 Score=24.53 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=28.0
Q ss_pred HHHHHHHHhHCCCeEEEEe-CCchhHHHHHHhcCccccccEEEe
Q 026879 149 AYQSILLLKDAGVKVAVVS-NFDTRLRKLLKDLNVIDLFDAVVI 191 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~S-n~~~~~~~~l~~~gl~~~fd~ii~ 191 (231)
-.++++.+++.|+++++-| |...++...+ .+|+ |.+++
T Consensus 250 ~~~~v~~~~~~G~~v~vWTVNd~~~~~~l~-~~GV----dgIiT 288 (300)
T cd08612 250 RPSLFRHLQKRGIQVYGWVLNDEEEFERAF-ELGA----DGVMT 288 (300)
T ss_pred CHHHHHHHHHCCCEEEEeecCCHHHHHHHH-hcCC----CEEEe
Confidence 3588999999999999999 6555555444 4675 66666
No 309
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=30.52 E-value=1.2e+02 Score=25.12 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=28.9
Q ss_pred cccCCCHHHHHHHHhHCC-C-eEEEEeCCch--hHHHHHHhcCcc
Q 026879 143 WHLPHGAYQSILLLKDAG-V-KVAVVSNFDT--RLRKLLKDLNVI 183 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g-~-~i~i~Sn~~~--~~~~~l~~~gl~ 183 (231)
+-+.++..++++.+++.+ + .+.+.||+.. +....|...|+.
T Consensus 72 Pllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~ 116 (329)
T PRK13361 72 PLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLK 116 (329)
T ss_pred CCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCC
Confidence 456788899999998875 3 6888999763 234455666654
No 310
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=30.45 E-value=45 Score=19.72 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=15.6
Q ss_pred CCHHHHHHHHhHCCCeEEEEeC
Q 026879 147 HGAYQSILLLKDAGVKVAVVSN 168 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn 168 (231)
|+-.+.|+.|.+.|.+|-|.|-
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~ 23 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTY 23 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--H
T ss_pred cHHHHHHHHHHHCCCeEEecCc
Confidence 3456889999999999999874
No 311
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=30.04 E-value=2.7e+02 Score=21.74 Aligned_cols=68 Identities=21% Similarity=0.167 Sum_probs=48.0
Q ss_pred ccCCCHH-HHHHHHhHCCCeEEEEeCCc-h-----hHHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCC
Q 026879 144 HLPHGAY-QSILLLKDAGVKVAVVSNFD-T-----RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHG 215 (231)
Q Consensus 144 ~~~pgv~-~~L~~L~~~g~~i~i~Sn~~-~-----~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~ 215 (231)
.++|++. ++.+.+++.|.+-.|+.... + .+...++.+|+.-.|...+|+-+- ..+| .+...++.+|.+
T Consensus 59 ~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~-~~~p---~i~~F~~~fGkP 133 (217)
T PF02593_consen 59 GLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEE-NGNP---QIDEFAEYFGKP 133 (217)
T ss_pred ccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCC-CCCh---hHHHHHHHhCCc
Confidence 5778877 56666777899998887643 3 468889999998888888887543 2333 455555557754
No 312
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=30.03 E-value=2.3e+02 Score=21.18 Aligned_cols=20 Identities=0% Similarity=-0.142 Sum_probs=10.6
Q ss_pred HHHHHHhHCCCeEEEEeCCc
Q 026879 151 QSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 151 ~~L~~L~~~g~~i~i~Sn~~ 170 (231)
++++...++|.+++++-+.+
T Consensus 39 ~l~~~~~~~~~~vfllG~~~ 58 (177)
T TIGR00696 39 ELCQRAGKEKLPIFLYGGKP 58 (177)
T ss_pred HHHHHHHHcCCeEEEECCCH
Confidence 44444455556666665443
No 313
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.73 E-value=72 Score=25.93 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.4
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSN 168 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn 168 (231)
.-||+..+++++|++.|+++.+..+
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeC
Confidence 5689999999999999999998775
No 314
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=29.53 E-value=22 Score=22.44 Aligned_cols=9 Identities=44% Similarity=0.645 Sum_probs=8.2
Q ss_pred EEecCCccc
Q 026879 54 LLDAGGTLL 62 (231)
Q Consensus 54 iFD~DGTL~ 62 (231)
=|||+|.|+
T Consensus 4 RFdf~G~l~ 12 (73)
T PF08620_consen 4 RFDFDGNLL 12 (73)
T ss_pred cccCCCCEe
Confidence 399999999
No 315
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=29.49 E-value=1.2e+02 Score=21.16 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=26.6
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCcc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVI 183 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~ 183 (231)
-..+.+.|.++|..+.|+++--......|+..|+.
T Consensus 54 G~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIk 88 (121)
T COG1433 54 GIRIAELLVDEGVDVVIASNIGPNAYNALKAAGIK 88 (121)
T ss_pred hHHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcE
Confidence 34577888888888888888666666678888874
No 316
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=29.47 E-value=1.8e+02 Score=19.66 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=28.1
Q ss_pred ccEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHH
Q 026879 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADI 88 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
-+-|..|-||-|.++..-.......++++.++..+.+.+
T Consensus 8 gk~i~~D~dGyL~~~~dW~E~vAe~lA~~e~i~LT~eHW 46 (111)
T COG2920 8 GKEIETDEDGYLKDSEDWSEKVAEALAEREGIELTEEHW 46 (111)
T ss_pred CeEEeecccchhcChhhhCHHHHHHHHHHhccCccHHHH
Confidence 366899999999998655455555666667777776654
No 317
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=29.38 E-value=35 Score=21.81 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.3
Q ss_pred ccEEEEecCCcccccc
Q 026879 50 YDAVLLDAGGTLLQLA 65 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~ 65 (231)
.-.|+++-|||.++++
T Consensus 40 ~~~lvL~eDGTeVddE 55 (78)
T cd01615 40 PVTLVLEEDGTEVDDE 55 (78)
T ss_pred CeEEEEeCCCcEEccH
Confidence 3458999999999875
No 318
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=29.38 E-value=89 Score=22.08 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=32.4
Q ss_pred HHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCC
Q 026879 155 LLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQ 217 (231)
Q Consensus 155 ~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~ 217 (231)
.|.+.|+....+.+-.. +.. .....+.+...-++.+++... --+| +|..+++.++++++
T Consensus 7 ~LqemGItqW~Lr~P~~-L~g-~~~i~lp~~~rLliV~~~~~~-~~~~-L~~dVLrsl~L~~~ 65 (128)
T PRK06856 7 LLQQLGITQWVLRRPGV-LQG-EIAISLPEHIRLVIVAEELPA-LTDP-LLQDVLRSLTLSPD 65 (128)
T ss_pred HHHHcCCceEEecCccc-cCC-CccccCCccceEEEEeCCCCc-ccCh-HHHHHHHHcCCCHH
Confidence 35666777777776321 111 122334444455666665432 1134 88888888888876
No 319
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=29.03 E-value=1.3e+02 Score=20.48 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=26.7
Q ss_pred HHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccc
Q 026879 151 QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLF 186 (231)
Q Consensus 151 ~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~f 186 (231)
.+++.++..|.++.+++. +..+...+...|++..|
T Consensus 67 ~~~~~~~~~g~~~~l~~i-~p~v~~~~~~~gl~~~~ 101 (117)
T COG1366 67 ALLKSARLRGVELVLVGI-QPEVARTLELTGLDKSF 101 (117)
T ss_pred HHHHHHHhcCCeEEEEeC-CHHHHHHHHHhCchhhc
Confidence 566778888877776665 56677788999998777
No 320
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=28.99 E-value=2.9e+02 Score=21.74 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=37.8
Q ss_pred CCHHHHHHHHhHCCC--eEEEEeCCchhHHHHHHhcCccccccEEE--ecCc-CCCCCCCHHHHHHHHH
Q 026879 147 HGAYQSILLLKDAGV--KVAVVSNFDTRLRKLLKDLNVIDLFDAVV--ISSE-VGCEKPDPRIFKAALG 210 (231)
Q Consensus 147 pgv~~~L~~L~~~g~--~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii--~s~~-~~~~KP~~~~~~~~~~ 210 (231)
+...++|+.+++.|. +.+++=|-...+..+...++ ..|.+. +.+. .+-.|-.+..++++.+
T Consensus 103 ~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~---~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~ 168 (228)
T PRK08091 103 HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD---QIDLIQILTLDPRTGTKAPSDLILDRVIQ 168 (228)
T ss_pred ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh---hcCEEEEEEECCCCCCccccHHHHHHHHH
Confidence 457789999999998 99999885444333222222 234432 3332 2356677778877765
No 321
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=28.83 E-value=1.8e+02 Score=22.90 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=30.4
Q ss_pred HHHHHHHhHCCCeEEEEe-CCchhHHHHHHhcCccccccEEEecCcCCCCCCC
Q 026879 150 YQSILLLKDAGVKVAVVS-NFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPD 201 (231)
Q Consensus 150 ~~~L~~L~~~g~~i~i~S-n~~~~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~ 201 (231)
.++++.++++|+++++-| |....+. .+-.+|+ |.|++ |....-||.
T Consensus 199 ~~~v~~~~~~g~~v~~WTvn~~~~~~-~l~~~GV----dgIiT-D~p~~~~~~ 245 (249)
T PRK09454 199 EARVAALKAAGLRILVYTVNDPARAR-ELLRWGV----DCICT-DRIDLIGPD 245 (249)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHcCC----CEEEe-CChHhcCcc
Confidence 578999999999999999 6444444 4555665 56555 444444543
No 322
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=28.70 E-value=63 Score=23.87 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.5
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCc
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
--+++.++++.++++|.++..+|+..
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35789999999999999999999854
No 323
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=28.68 E-value=1.6e+02 Score=25.85 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=26.1
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecCc
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE 194 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~~ 194 (231)
.++.++=+.|++.|.++.+..+.+.+ +...++..++ +.|+...+
T Consensus 55 esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~----~~V~~~~~ 99 (471)
T TIGR03556 55 GCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGA----KAVYWNLD 99 (471)
T ss_pred HHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCC----CEEEEecc
Confidence 33445556677777788777765555 4556666664 44554443
No 324
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=28.48 E-value=1.4e+02 Score=22.55 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=24.8
Q ss_pred HHHHHHhHCCCeEEEEeCCchhHHHHHHhcCcc
Q 026879 151 QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVI 183 (231)
Q Consensus 151 ~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~ 183 (231)
.+-..|...|++.+++|. ++.+...+.++|+.
T Consensus 107 ~l~~~L~~~g~~w~vfTa-T~~lr~~~~rlgl~ 138 (179)
T PF12261_consen 107 ALAQLLAQQGFEWVVFTA-TRQLRNLFRRLGLP 138 (179)
T ss_pred HHHHHHHHCCCCEEEEeC-CHHHHHHHHHcCCC
Confidence 345566778999999998 56677788888886
No 325
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=28.30 E-value=1.6e+02 Score=19.42 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=25.4
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVID 184 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~ 184 (231)
..++.+.++..|.++.++.- ...+...++..|+..
T Consensus 62 l~~~~~~~~~~g~~l~l~g~-~~~v~~~l~~~gl~~ 96 (109)
T cd07041 62 LLRLARALRLLGARTILTGI-RPEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHcCCeEEEEeC-CHHHHHHHHHhCCCh
Confidence 34577788888877776653 456777888889875
No 326
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=28.24 E-value=80 Score=21.23 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=27.0
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCc
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl 182 (231)
++..++..++++.|+.+..+|..+.+ +...++..++
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 34556777888889999999986654 6777877773
No 327
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=28.23 E-value=64 Score=22.03 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhc
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDL 180 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~ 180 (231)
-+++.+.++.++++|.++..+|+.. ++....+..
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~-~l~~~~~~~ 89 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG-KLLEMAREH 89 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHc
Confidence 4678889999999999999999633 344444433
No 328
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=28.00 E-value=1.2e+02 Score=19.66 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=24.9
Q ss_pred CCHHHHHHHHhHC--CCeEEEEeCCch-hHHHHHHhcCccccc
Q 026879 147 HGAYQSILLLKDA--GVKVAVVSNFDT-RLRKLLKDLNVIDLF 186 (231)
Q Consensus 147 pgv~~~L~~L~~~--g~~i~i~Sn~~~-~~~~~l~~~gl~~~f 186 (231)
-...++++.+++. +.++.++|+... ......-..|..+|+
T Consensus 56 ~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 56 GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYL 98 (112)
T ss_dssp SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEE
T ss_pred ccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 3456778888774 488888886443 333334477765443
No 329
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=27.96 E-value=54 Score=25.71 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.2
Q ss_pred ccEEEEecCCcccccc
Q 026879 50 YDAVLLDAGGTLLQLA 65 (231)
Q Consensus 50 ~k~iiFD~DGTL~d~~ 65 (231)
-.+++||+||||++..
T Consensus 3 ~~~l~lD~DGTL~~~~ 18 (244)
T TIGR00685 3 KRAFFFDYDGTLSEIV 18 (244)
T ss_pred cEEEEEecCccccCCc
Confidence 3679999999999753
No 330
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=27.86 E-value=1.1e+02 Score=19.68 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=8.4
Q ss_pred HHHHHHHhHCCCeEE
Q 026879 150 YQSILLLKDAGVKVA 164 (231)
Q Consensus 150 ~~~L~~L~~~g~~i~ 164 (231)
.++.+.|.+.|++++
T Consensus 3 ~~~~~~l~~lG~~i~ 17 (90)
T smart00851 3 VELAKRLAELGFELV 17 (90)
T ss_pred HHHHHHHHHCCCEEE
Confidence 345555555666654
No 331
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=27.60 E-value=39 Score=21.73 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.9
Q ss_pred cEEEEecCCcccccc
Q 026879 51 DAVLLDAGGTLLQLA 65 (231)
Q Consensus 51 k~iiFD~DGTL~d~~ 65 (231)
-.|+++-|||.++++
T Consensus 43 ~~lvL~eDGT~VddE 57 (80)
T cd06536 43 ITLVLAEDGTIVEDE 57 (80)
T ss_pred eEEEEecCCcEEccH
Confidence 468899999999875
No 332
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=27.60 E-value=61 Score=22.92 Aligned_cols=51 Identities=18% Similarity=0.105 Sum_probs=35.6
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcCCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGC 197 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~~ 197 (231)
+..++...++++.++..|++++..+.....+. .+.+....-.+++.+..|-
T Consensus 58 ~~~~~~~~~~l~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~lv~G~E~~Gl 108 (142)
T PF00588_consen 58 IRRVDDLEEALKDLKENGYTIVATSPGATPLY----ELDFPKKVALVFGNESRGL 108 (142)
T ss_dssp EEEESSHHHHHHHHHHTTEEEEEESTTSCEGG----GSHTTSSEEEEEEBTTTBS
T ss_pred eeeeehhhhhcccccccccccceeeecccccc----ccccccceEEEEcCcCCCC
Confidence 45678999999999999999988887333333 2333344456777776664
No 333
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=27.54 E-value=94 Score=20.87 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=27.8
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLF 186 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~f 186 (231)
..++.+.++.+|.+++++ |....+...++..|+.+.+
T Consensus 69 L~~~~~~~~~~g~~~~l~-~~~~~v~~~l~~~~~~~~~ 105 (117)
T PF01740_consen 69 LVDIIKELRRRGVQLVLV-GLNPDVRRILERSGLIDFI 105 (117)
T ss_dssp HHHHHHHHHHTTCEEEEE-SHHHHHHHHHHHTTGHHHS
T ss_pred HHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHcCCChhc
Confidence 346778888898877665 4355677789999998777
No 334
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=27.25 E-value=2.6e+02 Score=22.14 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=14.2
Q ss_pred HHHHHHHhHCCCeEEEEeCCch
Q 026879 150 YQSILLLKDAGVKVAVVSNFDT 171 (231)
Q Consensus 150 ~~~L~~L~~~g~~i~i~Sn~~~ 171 (231)
.++++...++|++++++-+.+.
T Consensus 95 ~~ll~~~~~~~~~v~llG~~~~ 116 (243)
T PRK03692 95 EALMARAGKEGTPVFLVGGKPE 116 (243)
T ss_pred HHHHHHHHhcCCeEEEECCCHH
Confidence 3455555666788888865544
No 335
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=26.98 E-value=2.1e+02 Score=19.58 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=26.7
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHH
Q 026879 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADI 88 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
+.|-.|=+|=|++...-.......++...|+.++.+.+
T Consensus 7 ~~ie~D~eGfL~~~~dW~e~vA~~lA~~egieLT~~HW 44 (109)
T PRK11508 7 KEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEHW 44 (109)
T ss_pred EEeeeCCCCCcCChHHCCHHHHHHHHHHhCCCCCHHHH
Confidence 45888999999997644455556666667877776654
No 336
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=26.95 E-value=58 Score=23.60 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCC
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNF 169 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~ 169 (231)
.|...++|+..++.|++++.|+.+
T Consensus 90 v~sl~eLl~~a~e~GVk~~AC~ms 113 (148)
T PF13686_consen 90 VPSLEELLEMAKELGVKFYACSMS 113 (148)
T ss_dssp ---HHHHHHHHHHCCEEEEEEHHH
T ss_pred CCCHHHHHHHHHHCCCEEEEehhh
Confidence 467889999999999999999973
No 337
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.92 E-value=80 Score=21.52 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCCc
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
-.+..+.++.++++|.++.++|+..
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESST
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCC
Confidence 3557788999999999999999644
No 338
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.74 E-value=55 Score=18.53 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=14.5
Q ss_pred ccCCCHHHHHHHHhHCCCeE
Q 026879 144 HLPHGAYQSILLLKDAGVKV 163 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i 163 (231)
-..+.+.+++++|++.|+.+
T Consensus 16 GlI~~~~~~l~~l~~~g~~i 35 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRI 35 (48)
T ss_pred CChhhHHHHHHHHHHcCccc
Confidence 34457888888888887754
No 339
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=26.29 E-value=67 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.4
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCc
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
+.+.++++.++++|.+++++|+..
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCC
Confidence 557888999999999999999744
No 340
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=26.26 E-value=53 Score=26.58 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=23.5
Q ss_pred cccCCCH-HHHHHHHhHCCCeEEEEeCCc
Q 026879 143 WHLPHGA-YQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 143 ~~~~pgv-~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
..+.|+. .++++.+++.|+.+.+.||+.
T Consensus 136 Pll~~~~l~~l~~~~k~~g~~~~i~TnG~ 164 (295)
T TIGR02494 136 PLLQPEFALALLQACHERGIHTAVETSGF 164 (295)
T ss_pred hhchHHHHHHHHHHHHHcCCcEeeeCCCC
Confidence 4466775 689999999999999999985
No 341
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=26.21 E-value=2.2e+02 Score=19.47 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=26.6
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHHhCCCCCHHHH
Q 026879 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADI 88 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
+.|-.|=+|=|++...-.......++...|+.++.+.+
T Consensus 6 ~~i~~D~~GfL~~~~dW~e~vA~~lA~~egieLT~~Hw 43 (108)
T TIGR03342 6 KEIELDEDGYLLDLDDWSEDVAEALAEEEGIELTEAHW 43 (108)
T ss_pred eeeeeCCCCCcCChHHCCHHHHHHHHHHcCCCCCHHHH
Confidence 45778999999997544455556666667887776654
No 342
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.08 E-value=90 Score=25.52 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=22.3
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSN 168 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn 168 (231)
.-+|+..++++.|++.|+++++..+
T Consensus 67 ~~FPdp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 67 TKFPDPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred hhCCCHHHHHHHHHHCCCeEEEEEC
Confidence 4689999999999999999988765
No 343
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=26.02 E-value=35 Score=25.93 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=13.6
Q ss_pred cEEEEecCCcccccccc
Q 026879 51 DAVLLDAGGTLLQLAEP 67 (231)
Q Consensus 51 k~iiFD~DGTL~d~~~~ 67 (231)
..|-||++||++.....
T Consensus 59 ~~v~~D~~GT~m~iPYG 75 (271)
T PF06901_consen 59 HTVTFDFQGTKMVIPYG 75 (271)
T ss_pred eeEEEeccceEEEeech
Confidence 56999999999876533
No 344
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=26.01 E-value=1.5e+02 Score=20.47 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=23.4
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCcc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVI 183 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~ 183 (231)
...+-+.|+++|+.+.++|+.. ....++..|+.
T Consensus 15 ~lala~~L~~rGh~V~~~~~~~--~~~~v~~~Gl~ 47 (139)
T PF03033_consen 15 FLALARALRRRGHEVRLATPPD--FRERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHHTT-EEEEEETGG--GHHHHHHTT-E
T ss_pred HHHHHHHHhccCCeEEEeeccc--ceecccccCce
Confidence 3468899999999999999844 44455778875
No 345
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=25.98 E-value=1.3e+02 Score=23.92 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=25.1
Q ss_pred HHHHHHHhHCCCeEEEEe-CCchhHHHHHHhcCcc
Q 026879 150 YQSILLLKDAGVKVAVVS-NFDTRLRKLLKDLNVI 183 (231)
Q Consensus 150 ~~~L~~L~~~g~~i~i~S-n~~~~~~~~l~~~gl~ 183 (231)
.++++.+++.|+++++=| |...++...++.+|++
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~~~~~~~l~~~~GVd 252 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNTPTEKQYFAKTLNVP 252 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHHHHHhCCC
Confidence 478999999999999999 6555555544437863
No 346
>PRK13937 phosphoheptose isomerase; Provisional
Probab=25.71 E-value=75 Score=23.88 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=22.4
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCc
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
--+++.+.++.++++|.++..+|+..
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35778999999999999999999854
No 347
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=25.64 E-value=62 Score=24.95 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=33.3
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCCchh-HHHHHHhcCccccccEEEecC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISS 193 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~-~~~~l~~~gl~~~fd~ii~s~ 193 (231)
....|++.++|+.|++. +.++++-.++-. +...+ --.+.+.||.++.-+
T Consensus 27 ~~~~~e~~~~l~~lr~~-v~ig~VggsDl~k~~eql-G~~Vl~~fDY~F~EN 76 (252)
T KOG3189|consen 27 QKVTPEMLEFLQKLRKK-VTIGFVGGSDLSKQQEQL-GDNVLEEFDYVFSEN 76 (252)
T ss_pred ccCCHHHHHHHHHHhhh-eEEEEeecHHHHHHHHHh-chhHHhhhcccccCC
Confidence 36779999999999998 999999876632 32223 223445677766533
No 348
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=25.44 E-value=1.4e+02 Score=22.34 Aligned_cols=39 Identities=8% Similarity=0.287 Sum_probs=29.4
Q ss_pred cEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCcee
Q 026879 187 DAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSLFM 229 (231)
Q Consensus 187 d~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 229 (231)
...++..++|..-.+-.+++++++. |.+ .++|++|++.+
T Consensus 60 ~~~lt~gEiGC~lSH~~~w~~~v~~-~~~---~~lIlEDDv~~ 98 (200)
T PF01755_consen 60 GRPLTPGEIGCALSHIKAWQRIVDS-GLE---YALILEDDVIF 98 (200)
T ss_pred cccCCcceEeehhhHHHHHHHHHHc-CCC---eEEEEeccccc
Confidence 3455667888888889999999975 333 77888998865
No 349
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=25.41 E-value=77 Score=23.43 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=22.4
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCch
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFDT 171 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~~ 171 (231)
--+++.++++.++++|.++..+|+...
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~ 113 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPD 113 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 346788899999999999999998543
No 350
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=25.32 E-value=94 Score=25.63 Aligned_cols=25 Identities=4% Similarity=-0.074 Sum_probs=21.7
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSN 168 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn 168 (231)
.-+|+..++++.|+++|+++.+..+
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 5689999999999999999887653
No 351
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=25.32 E-value=95 Score=25.64 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=21.9
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSN 168 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn 168 (231)
.-+|+..++++.|+++|+++.+.-+
T Consensus 68 ~~FPdp~~mi~~Lh~~G~~~~~~i~ 92 (317)
T cd06594 68 ERYPGLDELIEELKARGIRVLTYIN 92 (317)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 5689999999999999999988654
No 352
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.05 E-value=96 Score=25.56 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=22.1
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSN 168 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn 168 (231)
.-+|+..+++++|+++|+++.+..+
T Consensus 70 ~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 70 DRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 6789999999999999999988554
No 353
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=24.74 E-value=2.2e+02 Score=23.99 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=42.8
Q ss_pred HHHHHHhHCCCeEEEE--eCCchhHHHHHHhcCcccccc----EEEecCcCCCCC-CCHHHHHHHHHhcCCCCC
Q 026879 151 QSILLLKDAGVKVAVV--SNFDTRLRKLLKDLNVIDLFD----AVVISSEVGCEK-PDPRIFKAALGTSEHGFQ 217 (231)
Q Consensus 151 ~~L~~L~~~g~~i~i~--Sn~~~~~~~~l~~~gl~~~fd----~ii~s~~~~~~K-P~~~~~~~~~~~~~~~~~ 217 (231)
+++..|.+.++++-++ ||-......-++..++..+|| ..+.+|+....= |-..=|..++...++...
T Consensus 237 ~L~~~l~~~qI~levCP~SNi~~~~v~~~~~hPf~~~~d~Gv~VsLnTDdp~~f~~~l~~Ey~~aa~~~~l~~~ 310 (345)
T COG1816 237 ELLYRLAERQIPLEVCPLSNIQLGVVPSLAKHPFKKLFDAGVKVSLNTDDPLYFGTPLIEEYLVAAQIYGLSRE 310 (345)
T ss_pred HHHHHHHHhCCeeEECCcchhhcccccchhhCcHHHHHHcCCceEEcCCChhhcCCchHHHHHHHHHHhCCCHH
Confidence 8999999998887776 563222333345555555554 467777765443 666677777777776643
No 354
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.62 E-value=4e+02 Score=23.11 Aligned_cols=80 Identities=13% Similarity=0.208 Sum_probs=50.0
Q ss_pred ccCCCHHHHHHHHhHC-CCeEEEE-eCCch-hH-HHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcC-CCCCc
Q 026879 144 HLPHGAYQSILLLKDA-GVKVAVV-SNFDT-RL-RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSE-HGFQL 218 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~-g~~i~i~-Sn~~~-~~-~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~-~~~~~ 218 (231)
.+-+|+.+-|.+...+ ++++|.- |-.+. .+ ..-++++.= +-||-||. |--|+.|-+.+.|+...+--+ +.|.
T Consensus 139 TFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk-e~fdvIIv-DTSGRh~qe~sLfeEM~~v~~ai~Pd- 215 (483)
T KOG0780|consen 139 TFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK-ENFDVIIV-DTSGRHKQEASLFEEMKQVSKAIKPD- 215 (483)
T ss_pred ccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh-cCCcEEEE-eCCCchhhhHHHHHHHHHHHhhcCCC-
Confidence 4678888888887665 6777763 32222 22 333444433 33776665 666899999999998887664 4555
Q ss_pred cceeeCCC
Q 026879 219 SCSVMPSS 226 (231)
Q Consensus 219 ~~~v~~d~ 226 (231)
++++|-|.
T Consensus 216 ~vi~VmDa 223 (483)
T KOG0780|consen 216 EIIFVMDA 223 (483)
T ss_pred eEEEEEec
Confidence 55554443
No 355
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.31 E-value=95 Score=25.57 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.6
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSN 168 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn 168 (231)
.-+|+..++++.|+++|+++.+..+
T Consensus 67 ~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 67 KAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred ccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 6789999999999999999998775
No 356
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=24.13 E-value=49 Score=21.21 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=12.9
Q ss_pred cEEEEecCCcccccc
Q 026879 51 DAVLLDAGGTLLQLA 65 (231)
Q Consensus 51 k~iiFD~DGTL~d~~ 65 (231)
-.|+++-|||.++++
T Consensus 40 ~~lvL~eDGT~Vd~E 54 (79)
T cd06538 40 SSLVLDEDGTGVDTE 54 (79)
T ss_pred cEEEEecCCcEEccH
Confidence 458999999999875
No 357
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=24.13 E-value=1.6e+02 Score=25.16 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=39.7
Q ss_pred CCeEEEEeCCc-hhHHHHHHhcCccccc--cEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCC
Q 026879 160 GVKVAVVSNFD-TRLRKLLKDLNVIDLF--DAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSS 226 (231)
Q Consensus 160 g~~i~i~Sn~~-~~~~~~l~~~gl~~~f--d~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~ 226 (231)
++.-+++|++. .....++--+||...| +.|+++..+|+ -..|+++..++|.+- ..++|+|-
T Consensus 370 ncvnVlvTttqLipalaKvLL~gLg~~fpiENIYSa~kiGK----escFerI~~RFg~K~--~yvvIgdG 433 (468)
T KOG3107|consen 370 NCVNVLVTTTQLIPALAKVLLYGLGSSFPIENIYSATKIGK----ESCFERIQSRFGRKV--VYVVIGDG 433 (468)
T ss_pred ceeEEEEeccchhHHHHHHHHHhcCCcccchhhhhhhhccH----HHHHHHHHHHhCCce--EEEEecCc
Confidence 45567788754 3334444445666555 57888877764 459999999999741 34556664
No 358
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=24.11 E-value=1e+02 Score=25.18 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=22.4
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSN 168 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn 168 (231)
.-+|+..+++++|++.|+++++..+
T Consensus 63 ~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 63 DRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEec
Confidence 5789999999999999999988765
No 359
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=23.78 E-value=83 Score=22.74 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHhHCCCeEEEEeCCc
Q 026879 146 PHGAYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 146 ~pgv~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
-+++.+.++.++++|.++..+|+..
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4678899999999999999999754
No 360
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=23.69 E-value=1.1e+02 Score=21.64 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=17.2
Q ss_pred HHHHHHHHhHCCCeEEEEeCCch
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDT 171 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~ 171 (231)
+.++.+.|+++|+.+.++++...
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-T
T ss_pred HHHHHHHHHHCCCEEEEEEcCCC
Confidence 45778888999999999997543
No 361
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.55 E-value=1.1e+02 Score=25.63 Aligned_cols=25 Identities=24% Similarity=0.040 Sum_probs=21.2
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSN 168 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn 168 (231)
.-+|+..+++++|++.|+++.+..+
T Consensus 82 ~~FPdp~~mi~~Lh~~G~kv~l~v~ 106 (340)
T cd06597 82 GRWPNPKGMIDELHEQGVKVLLWQI 106 (340)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 3578999999999999999977544
No 362
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.54 E-value=3e+02 Score=23.02 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=36.6
Q ss_pred HHHHHHHHhHCCCeEEEEeCCch----------------hHHHHHHhcCcccc-ccEEEecCcCCCCCCCHHHHHHHHHh
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDT----------------RLRKLLKDLNVIDL-FDAVVISSEVGCEKPDPRIFKAALGT 211 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~----------------~~~~~l~~~gl~~~-fd~ii~s~~~~~~KP~~~~~~~~~~~ 211 (231)
-..+|..|++. +.+.|+-|... ++.+.++.+.-.+. ...++...- ...|..+.|..-+++
T Consensus 55 KIk~L~eLKdq-vEiviainA~diE~~K~RgDlgIsYd~dV~RLID~frel~~~v~sVViTqy--ed~p~a~aF~~rLEr 131 (493)
T COG4868 55 KIKLLNELKDQ-VEIVIAINAGDIERSKARGDLGISYDQDVFRLIDKFRELDIKVGSVVITQY--EDQPAADAFRTRLER 131 (493)
T ss_pred HHHHHHHHhhh-eEEEEEEeccchhhhhhccccCcchhHHHHHHHHHHHhcCeeeeeEEEEec--CCChhHHHHHHHHHh
Confidence 35689999988 88888776421 12222222221111 223333221 234899999999999
Q ss_pred cCCC
Q 026879 212 SEHG 215 (231)
Q Consensus 212 ~~~~ 215 (231)
.|+.
T Consensus 132 ~Gik 135 (493)
T COG4868 132 NGIK 135 (493)
T ss_pred cCcc
Confidence 9875
No 363
>PRK08005 epimerase; Validated
Probab=23.41 E-value=3.5e+02 Score=20.90 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=37.4
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchhH---HHHHHhcCccccccEEE--ecCc-CCCCCCCHHHHHHHHHhc
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTRL---RKLLKDLNVIDLFDAVV--ISSE-VGCEKPDPRIFKAALGTS 212 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~~---~~~l~~~gl~~~fd~ii--~s~~-~~~~KP~~~~~~~~~~~~ 212 (231)
+...++|+.+|+.|.+.+|+=|-...+ ...+.. .|.+. +.+. .+-.|=.+..++++.+.-
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~------vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~ 158 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQ------LDALMIMTSEPDGRGQQFIAAMCEKVSQSR 158 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHh------cCEEEEEEecCCCccceecHHHHHHHHHHH
Confidence 456789999999999999998854433 444432 34433 2222 224455677777777533
No 364
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=23.38 E-value=1.5e+02 Score=25.10 Aligned_cols=42 Identities=26% Similarity=0.184 Sum_probs=29.2
Q ss_pred CcccCCCHHHHHHHHhHC-CCe-EEEEeCCch--hHHHHHHhcCcc
Q 026879 142 AWHLPHGAYQSILLLKDA-GVK-VAVVSNFDT--RLRKLLKDLNVI 183 (231)
Q Consensus 142 ~~~~~pgv~~~L~~L~~~-g~~-i~i~Sn~~~--~~~~~l~~~gl~ 183 (231)
++.+.+++.++++.+++. |+. +.+.||+.. +....+...|++
T Consensus 116 EPllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld 161 (373)
T PLN02951 116 EPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLT 161 (373)
T ss_pred CCcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCC
Confidence 345678899999999986 875 888899853 233445556654
No 365
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=23.20 E-value=1.1e+02 Score=21.85 Aligned_cols=57 Identities=18% Similarity=0.097 Sum_probs=32.4
Q ss_pred ChhhhhhccCchHHHHHHhcCcccccccccccCCCCccccCCCccccccccEEEEecCCccccc
Q 026879 1 MEACISKCCHGNSLLKALKMKPLRFNISNRLRCSSMPLHSGVGKSVKKAYDAVLLDAGGTLLQL 64 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~iiFD~DGTL~d~ 64 (231)
|.+++|.=..+-.+|+++--+++. ++ +-. -..+.+.+..++..++++||= -|..+.-
T Consensus 14 M~rIrs~dTkpE~~lr~~L~~~G~-rf----R~~-~~~lpGkPDiVl~~y~~viFv-HGCFWh~ 70 (150)
T COG3727 14 MRRIRSRDTKPEKRLRSLLTGQGL-RF----RVQ-DKDLPGKPDIVLPKYRCVIFV-HGCFWHG 70 (150)
T ss_pred HHHHHccCccHHHHHHHHHhhcce-EE----Eec-CCCCCCCCCEeecCceEEEEE-eeeeccC
Confidence 677888888888888877633321 11 111 112333344457778888883 4555443
No 366
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=23.18 E-value=2e+02 Score=18.55 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=25.9
Q ss_pred HHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCcccccc
Q 026879 150 YQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFD 187 (231)
Q Consensus 150 ~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd 187 (231)
..+.+.++++|.++.+. |.+..+...+...|+...++
T Consensus 63 ~~~~~~~~~~~~~~~l~-~~~~~~~~~l~~~g~~~~~~ 99 (107)
T cd07042 63 EELVKDLRKRGVELYLA-GLNPQVRELLERAGLLDEIG 99 (107)
T ss_pred HHHHHHHHHCCCEEEEe-cCCHHHHHHHHHcCcHHHhC
Confidence 35677778888666555 55567788888888876554
No 367
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=23.06 E-value=90 Score=20.99 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=17.1
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchh
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTR 172 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~ 172 (231)
.++.++.+-++..+.+.+++|||...
T Consensus 68 ~~~~Q~~~Y~~~~~~~~~i~tNG~~~ 93 (112)
T PF13588_consen 68 KAVEQLKSYARALGAPYGILTNGKEF 93 (112)
T ss_dssp -SHHHHHHHHHHHT-SEEEEE-SS-E
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCeE
Confidence 46667777777778999999998643
No 368
>PF01114 Colipase: Colipase, N-terminal domain; InterPro: IPR017913 This entry represents the N-terminal domain of colipase proteins. Colipase [, ] is a small protein cofactor needed by pancreatic lipase for efficient dietary lipid hydrolyisis. It also binds to the bile-salt covered triacylglycerol interface, thus allowing the enzyme to anchor itself to the water-lipid interface. Efficient absorption of dietary fats is dependent on the action of pancreatic triglyceride lipase. Colipase binds to the C-terminal, non-catalytic domain of lipase, thereby stabilising as active conformation and considerably increasing the overall hydrophobic binding site. Structural studies of the complex and of colipase alone have revealed the functionality of its architecture [, ]. Colipase is a small protein with five conserved disulphide bonds. Structural analogies have been recognised between a developmental protein (Dickkopf), the pancreatic lipase C-terminal domain, the N-terminal domains of lipoxygenases and the C-terminal domain of alpha-toxin. These non-catalytic domains in the latter enzymes are important for interaction with membrane. It has not been established if these domains are also involved in eventual protein cofactor binding as is the case for pancreatic lipase [].; GO: 0008047 enzyme activator activity, 0007586 digestion, 0016042 lipid catabolic process, 0005576 extracellular region; PDB: 1PCO_A 1PCN_A 1LPA_A 1N8S_C 1LPB_A 1ETH_D.
Probab=22.89 E-value=9.9 Score=20.67 Aligned_cols=10 Identities=50% Similarity=1.354 Sum_probs=6.2
Q ss_pred hhhhccCchH
Q 026879 4 CISKCCHGNS 13 (231)
Q Consensus 4 ~~~~~~~~~~ 13 (231)
|.|+||++.+
T Consensus 20 CkS~CC~~~~ 29 (40)
T PF01114_consen 20 CKSQCCQRDS 29 (40)
T ss_dssp BSSS-EE-SS
T ss_pred hCcchhccCC
Confidence 7888988765
No 369
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=22.83 E-value=3.6e+02 Score=21.61 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=30.7
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchhH---HHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTRL---RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTS 212 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~~---~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~ 212 (231)
+..+++...+.|.+++++-..+.-+ ...++...-. -.++++.+ |..+|.-+ +.++++.
T Consensus 97 ~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~---l~ivg~h~-GYf~~~e~--~~i~~~I 157 (253)
T COG1922 97 VEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPG---LKIVGSHD-GYFDPEEE--EAIVERI 157 (253)
T ss_pred HHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCC---ceEEEecC-CCCChhhH--HHHHHHH
Confidence 4556666666789999998765433 3333321110 13455444 66666655 3444444
No 370
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=22.83 E-value=59 Score=20.75 Aligned_cols=35 Identities=3% Similarity=0.064 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHcCCCcccCCCHHHHHHHHhHCCC
Q 026879 125 TNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGV 161 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~ 161 (231)
..++..+.+.+.|.. . -...+++..+|..|+++|+
T Consensus 45 tv~eI~~~L~~~Y~~-~-e~~~~dV~~fL~~L~~~gl 79 (81)
T TIGR03859 45 SLAEIIQELAQRFPA-A-EEIEDDVIAFLAVARAKHW 79 (81)
T ss_pred cHHHHHHHHHHHcCC-h-hhHHHHHHHHHHHHHHCcC
Confidence 345566666677654 2 3566889999999998874
No 371
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.44 E-value=1.3e+02 Score=18.55 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=10.6
Q ss_pred CHHHHHHHHH-hcCCC
Q 026879 201 DPRIFKAALG-TSEHG 215 (231)
Q Consensus 201 ~~~~~~~~~~-~~~~~ 215 (231)
+|+..++.++ ++|..
T Consensus 53 ~~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 53 DPDYIEKVAREKLGMV 68 (80)
T ss_pred CHHHHHHHHHHHcCCc
Confidence 6777777777 77753
No 372
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=22.37 E-value=1.8e+02 Score=22.52 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=26.5
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCccc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVID 184 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~ 184 (231)
+.+-+..|++.|.++.+++.+.......++.+++..
T Consensus 18 ~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~ 53 (231)
T TIGR00761 18 FASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPP 53 (231)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCC
Confidence 445566677888888888877666777788888653
No 373
>TIGR00664 DNA_III_psi DNA polymerase III, psi subunit. This small subunit of the DNA polymerase III holoenzyme in E. coli and related species appearsto have a narrow taxonomic distribution. It is not found so far outside the gamma subdivision proteobacteria.
Probab=22.35 E-value=82 Score=22.46 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=29.5
Q ss_pred HHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCc
Q 026879 155 LLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQL 218 (231)
Q Consensus 155 ~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~ 218 (231)
.|.+.|+.-..+.+-. .+.. -....+.+...-++.+++.. .--++ .|..+++.+++++++
T Consensus 8 lLqeMGItqW~Lr~P~-~L~G-e~~i~Lp~~~rLliVa~~~p-~~~~~-L~~dILrsl~L~~~q 67 (133)
T TIGR00664 8 LLQELGISQWELRRPE-ALQG-EIAIAIAAHIRLIMVANDEN-ALSDP-LLADVLLALNLKKDN 67 (133)
T ss_pred HHHHcCCceEEecCcc-cccC-CcccCCchhceEEEEeCCCC-cccCh-HHHHHHHHcCCCHHH
Confidence 3555566666666522 1111 11123334444555555443 12223 577777777777663
No 374
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=21.68 E-value=1.1e+02 Score=22.62 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=17.1
Q ss_pred HHHHHHHHhHCCCeEEEEeC
Q 026879 149 AYQSILLLKDAGVKVAVVSN 168 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn 168 (231)
+.++++.|+++|++++++=.
T Consensus 19 ie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 19 IEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred HHHHHHHHHhCCcEEEEEEe
Confidence 45789999999999999864
No 375
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=21.56 E-value=1.2e+02 Score=25.25 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=22.2
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeC
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSN 168 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn 168 (231)
.-+|+..++++.|++.|+++.+..+
T Consensus 61 ~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 61 KKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 5689999999999999999988665
No 376
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=21.50 E-value=2.3e+02 Score=18.44 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=25.1
Q ss_pred HHHHHHHHhHCCCeEEEEeCCchhHHHHHHhcCcccc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDL 185 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~ 185 (231)
..++.+.++++|.++.++. .+..+...++..|+.+.
T Consensus 60 L~~l~~~~~~~g~~l~l~~-~~~~v~~~l~~~gl~~~ 95 (100)
T cd06844 60 LLERSRLAEAVGGQFVLTG-ISPAVRITLTESGLDKG 95 (100)
T ss_pred HHHHHHHHHHcCCEEEEEC-CCHHHHHHHHHhCchhh
Confidence 3456778888887776654 35667778888887653
No 377
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.24 E-value=1.4e+02 Score=23.32 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=24.0
Q ss_pred HHHHHHhHC-CCeEEEEe-CCchhHHHHHHhcCccccc
Q 026879 151 QSILLLKDA-GVKVAVVS-NFDTRLRKLLKDLNVIDLF 186 (231)
Q Consensus 151 ~~L~~L~~~-g~~i~i~S-n~~~~~~~~l~~~gl~~~f 186 (231)
++++.+++. |+++.+-| |...++.. +..+|.+-.|
T Consensus 199 ~~v~~~~~~~G~~v~vWTVnd~~~~~~-l~~~G~~~i~ 235 (237)
T cd08585 199 PFVTLARALLGMPVIVWTVRTEEDIAR-LKQYADNIIF 235 (237)
T ss_pred HHHHHHHHhcCCcEEEEeCCCHHHHHH-HHHhCCeeEe
Confidence 678888998 99999999 65444554 4445754444
No 378
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=21.04 E-value=4e+02 Score=20.67 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=24.5
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchh---HHHHHHh
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTR---LRKLLKD 179 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~---~~~~l~~ 179 (231)
+...++|+.+|+.|.+.+++=|-... +..+++.
T Consensus 93 ~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~ 128 (220)
T PRK08883 93 EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDK 128 (220)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh
Confidence 45778999999999999999884433 3444444
No 379
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=21.00 E-value=1.6e+02 Score=22.72 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=31.0
Q ss_pred eEEEEeCCchhHHHH---HHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCCCCccceeeCCCceee
Q 026879 162 KVAVVSNFDTRLRKL---LKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHGFQLSCSVMPSSLFMI 230 (231)
Q Consensus 162 ~i~i~Sn~~~~~~~~---l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v~~d~~~~V 230 (231)
-+.+++|.+...... ++.+...++. .+--+.....++..+.|+.++++..-+ =.+++-+++.++
T Consensus 2 siI~c~n~~~~~~~~~~~i~~~~~~~~~--~i~i~~~~~~~s~~~~yN~a~~~a~~~---ylvflHqDv~i~ 68 (217)
T PF13712_consen 2 SIIICVNDEELYEECLRSIKRLIGPPGE--LIEIDNVRNAKSMAAAYNEAMEKAKAK---YLVFLHQDVFII 68 (217)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--TEE--EEEEE-SSS-S-TTTHHHHHGGG--SS---EEEEEETTEE-S
T ss_pred EEEEEECCHHHHHHHHHHHHhhCCCCce--EEEEeccCCCcCHHHHHHHHHHhCCCC---EEEEEeCCeEEc
Confidence 356777855444333 4444333322 222333444588888999999885543 455566666543
No 380
>PRK06100 DNA polymerase III subunit psi; Provisional
Probab=20.92 E-value=2.1e+02 Score=20.38 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=31.6
Q ss_pred HHhHCCCeEEEEeCCchhHHH-HHHhcCccccccEEEecCcCCCCCCC-HHHHHHHHHhcCCCCC
Q 026879 155 LLKDAGVKVAVVSNFDTRLRK-LLKDLNVIDLFDAVVISSEVGCEKPD-PRIFKAALGTSEHGFQ 217 (231)
Q Consensus 155 ~L~~~g~~i~i~Sn~~~~~~~-~l~~~gl~~~fd~ii~s~~~~~~KP~-~~~~~~~~~~~~~~~~ 217 (231)
.|.+-|+.-..+.+.. .+.. ......+.+...-++.+++.. .++ +-+|..+++.++++++
T Consensus 8 ~LqqMGItqW~Lr~P~-~L~g~e~~~i~lp~~~rLliV~~~~p--~~~~~~L~~dVLrsm~l~~~ 69 (132)
T PRK06100 8 YLQEMGISQWELIHPE-RLAGYQPPTQDLDSDCKLLLVAPQCP--QNETALLFERILKSMQLELS 69 (132)
T ss_pred HHHHcCCceEEecCCc-cccCcccccccCCccceEEEEcCCCC--CccchHHHHHHHHHcCCCHH
Confidence 4556666666666632 1111 111123333344555555432 333 3388888888888877
No 381
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=20.89 E-value=68 Score=23.93 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=17.9
Q ss_pred CCHHHHHHHHhHCCCeEEEEe-CCch
Q 026879 147 HGAYQSILLLKDAGVKVAVVS-NFDT 171 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~S-n~~~ 171 (231)
+++.++.++|.+.|++++++| |.+.
T Consensus 95 ~e~~~~a~~L~~~gi~~v~Vs~~~~~ 120 (172)
T PF10740_consen 95 EEAVALAKQLIEQGIPFVGVSPNKPD 120 (172)
T ss_dssp HHHHHHHHHHHHHT--EEEEE-SS--
T ss_pred HHHHHHHHHHHHCCCCEEEEEecCCC
Confidence 357889999999999999999 5443
No 382
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.86 E-value=1.8e+02 Score=23.05 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=26.7
Q ss_pred HHHHHHHHhHCCCeEEEEe----CCchhHHHHHHhcCccccccEEEe
Q 026879 149 AYQSILLLKDAGVKVAVVS----NFDTRLRKLLKDLNVIDLFDAVVI 191 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~S----n~~~~~~~~l~~~gl~~~fd~ii~ 191 (231)
..++++.++++|+++.+-| +.+.+....+-.+|+ |.+++
T Consensus 212 ~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~~~Gv----dgiiT 254 (265)
T cd08564 212 TEEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYLELGV----DCICP 254 (265)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHHHcCC----CEEEc
Confidence 3578899999999999998 333444444556775 55555
No 383
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=20.79 E-value=33 Score=23.27 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=18.5
Q ss_pred CCHHHHHHHHhHCC--CeEEEEeCCchhH
Q 026879 147 HGAYQSILLLKDAG--VKVAVVSNFDTRL 173 (231)
Q Consensus 147 pgv~~~L~~L~~~g--~~i~i~Sn~~~~~ 173 (231)
+...++++.+++.+ ..+.+.||+....
T Consensus 65 ~~l~~~i~~~~~~~~~~~i~i~TNg~~~~ 93 (119)
T PF13394_consen 65 EDLIELIEYLKERGPEIKIRIETNGTLPT 93 (119)
T ss_dssp HHHHHHHCTSTT-----EEEEEE-STTHH
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCeecc
Confidence 45778888888888 9999999987653
No 384
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=20.62 E-value=2e+02 Score=17.05 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=19.2
Q ss_pred HHHHHHHHhHCCCeEEEEeCCc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
..++++.+++.|+....+|+-+
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC
Confidence 6789999999999999999643
No 385
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=20.60 E-value=56 Score=20.89 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=12.6
Q ss_pred cEEEEecCCcccccc
Q 026879 51 DAVLLDAGGTLLQLA 65 (231)
Q Consensus 51 k~iiFD~DGTL~d~~ 65 (231)
-.|+++=|||.++.+
T Consensus 41 ~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 41 VRLVLEEDGTEVDDE 55 (78)
T ss_dssp CEEEETTTTCBESSC
T ss_pred cEEEEeCCCcEEccH
Confidence 457889999999975
No 386
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=20.49 E-value=1.7e+02 Score=18.46 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=24.6
Q ss_pred HHHHHHHHhHCCCeEEEEeCCch-hHHHHHHhcCcc
Q 026879 149 AYQSILLLKDAGVKVAVVSNFDT-RLRKLLKDLNVI 183 (231)
Q Consensus 149 v~~~L~~L~~~g~~i~i~Sn~~~-~~~~~l~~~gl~ 183 (231)
+.++++.|+++ .+.. +++.+. .+-++|..+|+.
T Consensus 28 a~~If~~L~k~-~~~~-l~~~~~~~FGriL~~~gi~ 61 (73)
T PF12990_consen 28 AAEIFERLQKK-SPAA-LRGSNPNHFGRILQKLGIP 61 (73)
T ss_pred HHHHHHHHHHh-Cccc-cccCCHHHHHHHHHHcCCC
Confidence 67899999988 5665 565454 478889998875
No 387
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=20.45 E-value=2.4e+02 Score=22.76 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=30.1
Q ss_pred HHHHHhHCCCeEEEEeCCchhHHHHHHhcCccccccEEEecCcC
Q 026879 152 SILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEV 195 (231)
Q Consensus 152 ~L~~L~~~g~~i~i~Sn~~~~~~~~l~~~gl~~~fd~ii~s~~~ 195 (231)
-|.++++.|-++.++|-.+...-.+++..|+ |.+..++..
T Consensus 6 ~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~----d~ilvGdSl 45 (263)
T TIGR00222 6 SLLQKKKQEEKIVAITAYDYSFAKLFADAGV----DVILVGDSL 45 (263)
T ss_pred HHHHHHhCCCcEEEEeccCHHHHHHHHHcCC----CEEEECccH
Confidence 3667888888999999888776677888884 666666643
No 388
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=20.43 E-value=3.3e+02 Score=21.52 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=42.3
Q ss_pred HHHHHHHHhH--CCCeEEEEeC--Cc--hh-HHHHHHhcCccccccEEEecCcCCCCCCCHHHHHHHHHhcCCC
Q 026879 149 AYQSILLLKD--AGVKVAVVSN--FD--TR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALGTSEHG 215 (231)
Q Consensus 149 v~~~L~~L~~--~g~~i~i~Sn--~~--~~-~~~~l~~~gl~~~fd~ii~s~~~~~~KP~~~~~~~~~~~~~~~ 215 (231)
+.++.+.|.+ .+.+++.+++ |. .. +....+...+.+.||.++-.+.. ...+...++..+++.++..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~-~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLS-KNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEE-S-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccc-ccccccccccccccccccc
Confidence 4456667766 5788888875 33 23 35556565577778876654332 2333478889999888876
No 389
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=20.35 E-value=4e+02 Score=20.37 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.0
Q ss_pred CeEEEEeCCchhHHHHHHhcCc
Q 026879 161 VKVAVVSNFDTRLRKLLKDLNV 182 (231)
Q Consensus 161 ~~i~i~Sn~~~~~~~~l~~~gl 182 (231)
.++++.|+++... ..|+.+|+
T Consensus 3 ~~LiLAS~SPrR~-elL~~~gi 23 (193)
T COG0424 3 PRLILASSSPRRR-ELLEQLGI 23 (193)
T ss_pred ccEEEecCCHHHH-HHHHHCCC
Confidence 4788999977553 47888997
No 390
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.33 E-value=1.1e+02 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.4
Q ss_pred cCCCHHHHHHHHhHCCCeEEEEeCCc
Q 026879 145 LPHGAYQSILLLKDAGVKVAVVSNFD 170 (231)
Q Consensus 145 ~~pgv~~~L~~L~~~g~~i~i~Sn~~ 170 (231)
--+.+.+.++.++++|.++..+|+..
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35778899999999999999999754
No 391
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.27 E-value=97 Score=21.37 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.4
Q ss_pred cccCCCHHHHHHHHhHCCC-eEEEEeC
Q 026879 143 WHLPHGAYQSILLLKDAGV-KVAVVSN 168 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~-~i~i~Sn 168 (231)
-.+|..+.++++.+++.|+ ++.++||
T Consensus 95 ~~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 95 TVDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 4678889999999999998 5888887
No 392
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=20.26 E-value=4.3e+02 Score=20.64 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=34.9
Q ss_pred CCHHHHHHHHhHCCCeEEEEeCCchhH---HHHHHhcCccccccEEE--ecCc-CCCCCCCHHHHHHHHH
Q 026879 147 HGAYQSILLLKDAGVKVAVVSNFDTRL---RKLLKDLNVIDLFDAVV--ISSE-VGCEKPDPRIFKAALG 210 (231)
Q Consensus 147 pgv~~~L~~L~~~g~~i~i~Sn~~~~~---~~~l~~~gl~~~fd~ii--~s~~-~~~~KP~~~~~~~~~~ 210 (231)
+...++|+.+++.|.+.+++=|-...+ ..++.. .|.+. +.+. .+-.|=.+..++++.+
T Consensus 97 ~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~------vD~VlvMtV~PGf~GQ~fi~~~l~KI~~ 160 (223)
T PRK08745 97 RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPE------LDLVLVMSVNPGFGGQAFIPSALDKLRA 160 (223)
T ss_pred ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhh------cCEEEEEEECCCCCCccccHHHHHHHHH
Confidence 446789999999999999999854443 444433 44433 3322 2234444556655543
No 393
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=20.25 E-value=1.9e+02 Score=22.74 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=22.7
Q ss_pred cccCCCHHHHHHHHhHCCCeEEEEeCC
Q 026879 143 WHLPHGAYQSILLLKDAGVKVAVVSNF 169 (231)
Q Consensus 143 ~~~~pgv~~~L~~L~~~g~~i~i~Sn~ 169 (231)
+..++.+.++++.|++.|++++..+..
T Consensus 73 i~~~~~~~~~i~~lk~~g~~i~at~~~ 99 (229)
T PRK11081 73 VKTHRTIGDAVAHLKGQGMQILATHLS 99 (229)
T ss_pred EEEeCCHHHHHHHHHhCCCEEEEEeCC
Confidence 456789999999999999999887743
No 394
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=20.18 E-value=3.1e+02 Score=22.12 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=40.8
Q ss_pred CHHHHHHHHhHC-CCeEEEEeCCchh---HHHHHHhcCcc--------------ccccEEEecCcCCCCCC--CHHHHHH
Q 026879 148 GAYQSILLLKDA-GVKVAVVSNFDTR---LRKLLKDLNVI--------------DLFDAVVISSEVGCEKP--DPRIFKA 207 (231)
Q Consensus 148 gv~~~L~~L~~~-g~~i~i~Sn~~~~---~~~~l~~~gl~--------------~~fd~ii~s~~~~~~KP--~~~~~~~ 207 (231)
|.-.+...+.++ |..+..+|.+... +...++..|+. ..||.|++.+-...-.+ -+.+|.+
T Consensus 72 GwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg~~~~~~~f~~ 151 (273)
T PF02353_consen 72 GWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVGRKNYPAFFRK 151 (273)
T ss_dssp TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTCGGGHHHHHHH
T ss_pred CccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcChhHHHHHHHH
Confidence 344566666666 9999999987654 35566666543 45788888775554433 3788888
Q ss_pred HHHhcC
Q 026879 208 ALGTSE 213 (231)
Q Consensus 208 ~~~~~~ 213 (231)
+-+.+.
T Consensus 152 ~~~~Lk 157 (273)
T PF02353_consen 152 ISRLLK 157 (273)
T ss_dssp HHHHSE
T ss_pred HHHhcC
Confidence 888775
No 395
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=20.10 E-value=1.5e+02 Score=23.31 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=27.1
Q ss_pred ccCCCHHHHHHHHhHCCCeEEEEeCCchhHHHHHHh
Q 026879 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKD 179 (231)
Q Consensus 144 ~~~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~~l~~ 179 (231)
++..+|.+++..|++.|..+.|+|.-...++.+.++
T Consensus 170 Elv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadr 205 (240)
T COG1126 170 ELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADR 205 (240)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhhe
Confidence 344557889999999999999999855555555544
Done!